RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14969
(687 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 107 bits (270), Expect = 1e-26
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
KT ++ ++M+ DR + N PY D + + +++P A +LE +L G
Sbjct: 23 KTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 80
Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657
LDVG+GSG AC MV GKV +DH++ LV+ S N+RK+ LL G V +
Sbjct: 81 ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 101 bits (254), Expect = 1e-24
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
+ + M + DRK + P RNPY D + +++P A +LE LKPG
Sbjct: 30 ASDAVAQAMKETDRKHYSP--RNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGAR 87
Query: 601 VLDVGTGSGYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
+LDVG+GSGY AC ++ G ++ ++H LV SK N+ + +LD G +
Sbjct: 88 ILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147
Query: 656 NI 657
I
Sbjct: 148 LI 149
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 100 bits (252), Expect = 3e-24
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
K+K + D ++KV R++F P + Y D + + +++ + E LL LKPG
Sbjct: 21 KSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCE--LLDLKPG 78
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
VL++GTG GY AA +V G V S++ + L ++ +RK
Sbjct: 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 99.2 bits (248), Expect = 1e-23
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
++ + M++VDR + PY D V + + +++P A SL+ + LKPG
Sbjct: 26 DDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSR 83
Query: 601 VLDVGTGSGYTAACL----GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656
+DVG+GSGY C+ + + V L+ ++ LVNFS ENI+++ LL
Sbjct: 84 AIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK 143
Query: 657 I 657
I
Sbjct: 144 I 144
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 95.6 bits (238), Expect = 9e-22
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 542 TKELRDLMIKVDRKDFCPPNRNP---YHDYSVMLENCSYLNS----PSFIASSLEPALLK 594
+ + +++ R++F + Y D ++ + S PS +A +E +
Sbjct: 15 SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFME--WVG 72
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L G VL++G G+GY AA + +V G V S+++ + +K N+ +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 92.3 bits (230), Expect = 3e-21
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
++KE+ +K R + + D + + +++P +A LE + LKPG
Sbjct: 35 RSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLE--IANLKPG 92
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+L+VGTGSG+ AA + +V+ VY+++ + LV F+K N+ +
Sbjct: 93 MNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER 136
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 87.7 bits (218), Expect = 1e-19
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVML--ENCSYLNSPSFIASSLEPALLKLK 596
KT+EL + KVDR F P N Y L + + L+ L L
Sbjct: 12 KTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLD--ELDLH 69
Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
G VL++GTG GY A + +V KV S++ E + N++ + +
Sbjct: 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY 114
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 86.9 bits (216), Expect = 1e-19
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
+ +++ + + V R+ F + + + ++ + ++ P +A E LL+L P
Sbjct: 21 QDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTE--LLELTPQ 78
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
VL++GTGSGY A L ++V V S++ ++ L ++ ++
Sbjct: 79 SRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN 121
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 61.6 bits (149), Expect = 1e-10
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
A + PGD +++ G GSG L +V P G+V S + E + ENI+
Sbjct: 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146
Query: 651 DEGVVNIMRTLPPQQDASRVNISV 674
+ + +++ V + +
Sbjct: 147 VTIKLKDIYEGIEEENVDHVILDL 170
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 58.9 bits (142), Expect = 1e-09
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 562 RNPYHDYSVMLE---NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM 618
D + ++ Y SFIA +L +K GD ++D G GSG A L
Sbjct: 79 IPSLIDEIMNMKRRTQIVYPKDSSFIAM-----MLDVKEGDRIIDTGVGSGAMCAVLARA 133
Query: 619 VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISV 674
V GKV++ + E ++ N+ K V + ++D + + V
Sbjct: 134 VGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV 189
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 55.9 bits (134), Expect = 2e-08
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
G TVLD+G G+G +V HGKV +D ++ + +++ + +
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 651 DEG 653
Sbjct: 137 GSP 139
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 53.8 bits (129), Expect = 2e-08
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+K GDTV+D G+G A L +V +G+V+ D + + + + + +
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 53.9 bits (130), Expect = 2e-08
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
LK G TVLDVGTG+G+ L MV GKVY++D +E + +
Sbjct: 31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID-------VQEEMVNYAWEKVN 83
Query: 651 DEGVVNI 657
G+ N+
Sbjct: 84 KLGLKNV 90
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 54.8 bits (131), Expect = 4e-08
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 562 RNPYHDYSVMLE---NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM 618
R DY V+++ ++ + I +++ + PGDTVL+ G+GSG + L
Sbjct: 72 RPALEDYVVLMKRGTAITFPKDINMIL-----SMMDINPGDTVLEAGSGSGGMSLFLSKA 126
Query: 619 VRPHGKVYSLDHMEYLVNFSKENIRK-------NHAHLLDEGVVNIMRTL 661
V G+V S + + + +K+N + +H + V I + +
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 52.1 bits (125), Expect = 6e-08
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--- 647
+ L KP +T+ D+G GSG A P + E N
Sbjct: 19 SALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLGVSDR 77
Query: 648 HLLDEGVVNIMRTLPPQQDA 667
+ +G +P D
Sbjct: 78 IAVQQGAPRAFDDVPDNPDV 97
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 52.8 bits (126), Expect = 1e-07
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L+PG +L+VG GSG ++ + Y + G + ++ E + + +N+ + +
Sbjct: 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 159
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 49.7 bits (119), Expect = 6e-07
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L + D +DVG G+G L +VY++D ++ ++ N++++
Sbjct: 27 CLAEPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQRHG 79
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 50.3 bits (120), Expect = 7e-07
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
S L + K+ ++D G G GY L ++ K +D E L+ ++E R
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 49.7 bits (118), Expect = 1e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 564 PYHDYSVMLENCSYLNSPSFIASSLEPALLK------LKPGDTVLDVGTGSGYTAACLGY 617
P LE Y P+ +A+ + L+PG V V G L Y
Sbjct: 79 PGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDY 138
Query: 618 MVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
P ++ +D+ ++ + +
Sbjct: 139 SACPGVQLVGIDYDPEALDGATRLAAGHA 167
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 49.3 bits (117), Expect = 1e-06
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
LL L PG VL+ GTGSG L V G V S + + + ++ N+R
Sbjct: 90 TLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW 145
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 47.3 bits (113), Expect = 2e-06
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
+ ++D G G+G+ Y++ K+Y +D + KE
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCK---YLLEFATKLYCIDINVIALKEVKEKF 59
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 48.5 bits (115), Expect = 3e-06
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
++KPG+ +L++G G G +A L V G V +D
Sbjct: 37 EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 3e-06
Identities = 70/524 (13%), Positives = 150/524 (28%), Gaps = 157/524 (29%)
Query: 225 IRVNQPSIVMRSEDL----IEEMIKNQVFCIKLGDIVGCD------------FC--GKQL 266
+ V + + V ++ +++M K+ + ++ I+ +++
Sbjct: 22 LSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 267 LSKAVTSVEN-NF------CRSEKNSPNSKLSRYKDFIADRKQS--RKCPKKGISKADAE 317
+ K V V N+ ++E+ P+ Y + DR + + K +S+ +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRL--Q 135
Query: 318 IISSLKDCSYGLRD-RRV---------KTIPYENNRRSSLRINSNLKRKQIEDLPG---- 363
L+ LR + V K + + ++ L K +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGK---------TWVALDVCLSYKVQCKMDFKIFW 186
Query: 364 ---GNEKKSKS------TSCKVINHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNS 414
N ++ I+ +R S + +++ N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 415 ELKSQNENIAIVDSGRDCTSLEPLSVQ----------EVSHLKWHPSDSGDDAIHYYHPT 464
L ++ + ++ + ++ +V+ D + T
Sbjct: 247 LL--------VLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----------DFLSAATTT 287
Query: 465 PLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSR--KMKNTAVQ-- 520
H L + T S ++ R + +
Sbjct: 288 --HISLDHHSMT-------------------LTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 521 PL-LALVGMLVALCVSEFDMYKTKELRDL--MIKVDRKDFCPPN-RNPYHDYSVMLENCS 576
P L+++ + ++ +D +K L +I+ P R + SV +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384
Query: 577 YLNSPSFIASSLEPALLKL----KPGDTVLDVGTGSGYTAACLGY-MV--RPHGKVYSLD 629
+ P LL L V+ V Y +V +P S+
Sbjct: 385 -AHIP--------TILLSLIWFDVIKSDVMVV------VNKLHKYSLVEKQPKESTISI- 428
Query: 630 HMEYLVNFSK-ENIRKNHAHLLDEGVVNIMRT------LPPQQD 666
YL K EN H ++D NI +T +PP D
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYLD 470
Score = 43.7 bits (102), Expect = 2e-04
Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 55/255 (21%)
Query: 459 HYYHPTPLHQVLQENERGVILQYDGTYN-LCQSNQHC---DFTLRNTISFSSHFIFSRKM 514
H++H H + E QY Y + + +F ++ + ++
Sbjct: 2 HHHH----HMDFETGE----HQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 515 KNTAVQP-----LLALVGMLVALCVSEFDMYKTKELRD----LMIKVDRKDFCP-PNRNP 564
+ + L L L++ + + LR LM + + P
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 565 YHDYSVMLENCSYLNSPSFIA-----SSLEPALLKLKPGDTVLDVG-TGSGYT----AAC 614
Y + L N + + + ++ L ALL+L+P VL G GSG T C
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 615 LGYMVRPH--GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD---ASR 669
L Y V+ K++ +L N N E V+ +++ L Q D SR
Sbjct: 172 LSYKVQCKMDFKIF------WL-NLKNCNS--------PETVLEMLQKLLYQIDPNWTSR 216
Query: 670 VNISVE-PQKSGEIK 683
+ S + I+
Sbjct: 217 SDHSSNIKLRIHSIQ 231
Score = 37.9 bits (87), Expect = 0.011
Identities = 53/340 (15%), Positives = 95/340 (27%), Gaps = 90/340 (26%)
Query: 23 DQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNF---ELLQHFAD 79
+ +C LLT +R V D L S H E+
Sbjct: 263 NLSCKILLT-------TRFKQV----TDFLSAATTTHISLDHHSMT--LTPDEVKSLLLK 309
Query: 80 LLMGERNKRESGVFHCAERNFELLQIH-------GA--QEYITR-----KTEGSEEDEML 125
L + R + E+L + ++ + + ++
Sbjct: 310 YL----DCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 126 TGSI--LDWP-----YLEEEVVTQND-QIGRNSPRDLKCKLPWSKIFDFERESNDSDSAD 177
S+ L+ P + V I P L + W FD +
Sbjct: 360 ESSLNVLE-PAEYRKMFDRLSVFPPSAHI----PTILLSLI-W---FDVIKSDVMVVVNK 410
Query: 178 SQQRSL-ELGPVEIKLQLNSFQTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRS 236
+ SL E P E + + S LKVK H D N + ++
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPY 468
Query: 237 ED------------LIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFCRSEKN 284
D IE + +F + D F +++ + ++ N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKI--RHDSTAWN--ASGSIL 521
Query: 285 SPNSKLSRYKDFIADRKQSRKCPKKGISKADAEIISSLKD 324
+ +L YK +I D PK +++++ D
Sbjct: 522 NTLQQLKFYKPYICD-----NDPK------YERLVNAILD 550
Score = 30.2 bits (67), Expect = 3.2
Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 73/242 (30%)
Query: 27 TDLLTIL-YDCIVSRSFHVLQHFADLLMGERNKRESGVF-HCAGRNFELLQHFADLLMGE 84
T LL+++ +D I S V+ + E+ +ES + EL +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALH 446
Query: 85 RNKRESGVFHCAERNFELLQIHGAQEYI-------TRKTEGSEEDEMLTGSILDWPYLEE 137
R+ + + +L+ + +Y + E E + LD+ +LE+
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 138 EVVTQNDQIGRNSPRDLKCKLPWSKIFDFERESNDSDSADSQQRSLELGPVEIKLQLNSF 197
++ ++D N+ + LN+
Sbjct: 506 KI--RHDSTAWNASGSI---------------------------------------LNTL 524
Query: 198 QTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRSEDLIE--EMIKNQVFCIKLGD 255
Q LK + YI N P +++ I+ + C K D
Sbjct: 525 QQ--LKFYK----------------PYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 256 IV 257
++
Sbjct: 567 LL 568
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 46.8 bits (111), Expect = 4e-06
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN---HAHLLD 651
L V+D G+G A ++ KVY+ D E + + + + + L+
Sbjct: 20 LDDESIVVDATMGNGNDTA---FLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76
Query: 652 EGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD 687
+G N+ + A+ N+ P + K
Sbjct: 77 DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPH 112
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 46.1 bits (110), Expect = 7e-06
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
L L D V+DVG GSG + + VY++D+++ + +K+N+ K +
Sbjct: 29 GKLNLNKDDVVVDVGCGSG-GMTV--EIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNC 85
Query: 651 DEGVVN-----IMRTLPP 663
++ ++ L
Sbjct: 86 Q--IIKGRAEDVLDKLEF 101
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 46.7 bits (110), Expect = 1e-05
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
+ PG VL+ G GSG L V P G+V S + ++ N+ +
Sbjct: 93 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP 152
Query: 651 D 651
D
Sbjct: 153 D 153
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 45.6 bits (109), Expect = 1e-05
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 595 LKPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+ TV DVGTGSG A LG V + D + + ++EN N
Sbjct: 58 MVKPLTVADVGTGSGILAIAAHKLG-----AKSVLATDISDESMTAAEENAALNG 107
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 45.9 bits (108), Expect = 1e-05
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKN 645
L +K GD +L +G SG TA+ + ++ P G++Y ++ M L+ ++ R+N
Sbjct: 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--RRN 127
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 46.1 bits (109), Expect = 1e-05
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L L VL+ GTGSG A + G+V++ + +E +++N++K +
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLA---VLSEVAGEVWTFEAVEEFYKTAQKNLKKFN 137
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 46.1 bits (109), Expect = 2e-05
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 590 PALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649
PG VL+ G G G L P ++ S+D + ++EN
Sbjct: 30 HHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTE------ 82
Query: 650 LDEGVVNI 657
G+ N+
Sbjct: 83 -KNGIKNV 89
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 45.7 bits (109), Expect = 2e-05
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 591 ALLKL-KPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
AL + +PGD VLD+GTGSG A LG GK +D ++ ++ N ++N
Sbjct: 113 ALARHLRPGDKVLDLGTGSGVLAIAAEKLG------GKALGVDIDPMVLPQAEANAKRNG 166
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 44.8 bits (106), Expect = 2e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
A L + G+ + D+G GSG + G+ +++ + ++NI
Sbjct: 49 AALAPRRGELLWDIGGGSGSVSV---EWCLAGGRAITIEPRADRIENIQKNIDT 99
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 44.8 bits (106), Expect = 4e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
+ + VLD+G G+G+TA V + +D +KE + +
Sbjct: 15 KTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVD-------ATKEMVEVASSFAQ 64
Query: 651 DEGVVNI 657
++GV N+
Sbjct: 65 EKGVENV 71
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 44.0 bits (103), Expect = 9e-05
Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 21/137 (15%)
Query: 509 IFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDY 568
+ + + L+L+ + +M K +E+ + + ++
Sbjct: 52 SAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFY-----FYPR 106
Query: 569 SVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYS 627
+ L E AL + + G+ + +G G T L ++ +V
Sbjct: 107 YLEL-------------LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNV 151
Query: 628 LDHMEYLVNFSKENIRK 644
++ + S++ I
Sbjct: 152 VEIEPDIAELSRKVIEG 168
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 42.6 bits (100), Expect = 1e-04
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
+ L+L+ + D+G GS + ++ P+G++++L+ + F ++N++K A
Sbjct: 34 SKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVAR 90
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 43.3 bits (102), Expect = 1e-04
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
+L+ + D+G G+G + + +V + + + F++ ++
Sbjct: 30 SLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF 88
Query: 651 DE 652
Sbjct: 89 SA 90
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 42.6 bits (101), Expect = 2e-04
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L+ L VL++G GY+A + + P G++ + D +K+ +K
Sbjct: 67 LISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 42.6 bits (101), Expect = 2e-04
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L+KL V+D+GT +GY+A +G + G + + D E +KE K
Sbjct: 59 LVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK 111
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 42.7 bits (101), Expect = 2e-04
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+LKL ++VG +GY+ + GK+ ++D IRK
Sbjct: 65 VLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK 117
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 42.5 bits (100), Expect = 2e-04
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+ G T +D+G+G G + L + + +LD +++ + +NI
Sbjct: 38 NRFGITAG-TCIDIGSGPGALSIAL--AKQSDFSIRALDFSKHMNEIALKNIAD 88
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 42.2 bits (100), Expect = 2e-04
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L++++ +L++GT GY+ L + G+V +L+ E + ++ NI +
Sbjct: 53 LVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 42.3 bits (100), Expect = 2e-04
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHAHLL 650
L K+ ++++GT +GY++ C + GK+ D E N +++ ++ + +
Sbjct: 55 LTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKI 114
Query: 651 DEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKF 684
+ + + TL D+ G
Sbjct: 115 FLKLGSALETLQVLIDSKSAPSWASDFAFGPSSI 148
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 42.4 bits (100), Expect = 2e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 576 SYLNSPSFIASSLEP--ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
Y + SF+ E LL +PG+ +LD+G G+G + + +V D
Sbjct: 34 LYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKI---AQSGAEVLGTD 86
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 42.1 bits (99), Expect = 3e-04
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
+ LK + VLDV TG G+ A V KV + D +++ ++ A +
Sbjct: 31 QIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFD-------LTEDILKVARAFIE 80
Query: 651 DEGVVNI 657
G +
Sbjct: 81 GNGHQQV 87
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L++L VL++GT +GY+A + + G+V + D E + R+
Sbjct: 55 LIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 41.8 bits (99), Expect = 3e-04
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L ++K V+ G G G + + +V +D V ++ +
Sbjct: 51 LARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD 103
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 41.6 bits (98), Expect = 3e-04
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L +L LD+GT +GY+A L + G+V + + + R+
Sbjct: 64 LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 41.5 bits (98), Expect = 4e-04
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L++L +L++GT GY+ + + G++ +L+ + ++EN++
Sbjct: 58 LVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL 110
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 41.4 bits (97), Expect = 4e-04
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+ G +LDVG+ Y L + + +E + +N+ +
Sbjct: 13 VSQGAILLDVGSDHAYLPIEL-VERGQIKSAIAGEVVEGPYQSAVKNVEAHG 63
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 41.2 bits (97), Expect = 4e-04
Identities = 5/54 (9%), Positives = 15/54 (27%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
A + + +G + + + + +D +K R+
Sbjct: 50 ATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE 103
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 41.0 bits (96), Expect = 5e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
+ TVLD G G L V K Y ++ + + ++ R+N
Sbjct: 18 CNESNLDKTVLDCGAGGDLPP--LSIFVEDGYKTYGIEISDLQLKKAENFSREN 69
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 41.2 bits (97), Expect = 5e-04
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
LLKL +++G +GY+ + GK+ ++D + I+K
Sbjct: 74 LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK 126
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 41.0 bits (96), Expect = 5e-04
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L+ + G +LDVG+ Y L + + + + + +N+ ++
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFL-LQMGYCDFAIAGEVVNGPYQSALKNVSEHG 69
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 41.0 bits (96), Expect = 6e-04
Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
LE + + + D+G+ Y + + + ++ +++ +R +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFA-VKNQTASFAIAGEVVDGPFQSAQKQVRSSG 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 6e-04
Identities = 61/474 (12%), Positives = 135/474 (28%), Gaps = 158/474 (33%)
Query: 261 FCGKQL---LSKAVTSVENNFCRS-EKNSPNSKLSRYKDFIADRKQSRKCPKKGISKADA 316
F QL +K + F E +P + ++ +++ + + + D
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE-----PSKVGQFDQ 82
Query: 317 EIISSLKD--CSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIEDLPGGNEKKSKSTSC 374
+ L + Y L + + + + + + +K K++ K+ T+
Sbjct: 83 VLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTL---VKTKEL--------IKNYITAR 130
Query: 375 KVINHQAKDECLPQKGDLVRSDSSNESS-------Q--------EMVEENQRPNSELKSQ 419
+ L R+ + Q E+ + Q + +
Sbjct: 131 IMAKRPFDK---KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG-- 185
Query: 420 NENIAIVDSGRDCTSLEPLSVQEV------SH----LKW--HPSDSGDDAIHYYHPT--P 465
++ + L L + + L+W +PS++ D P P
Sbjct: 186 ----DLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 466 LHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLAL 525
L V+Q + Y + LR+ + ++ Q
Sbjct: 240 LIGVIQ------LAHY---VVTAKLLGFTPGELRSYLKGAT----------GHSQ----- 275
Query: 526 VGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPS--- 582
G++ A+ ++E D + F + + ++
Sbjct: 276 -GLVTAVAIAETD--------------SWESF-------FVSVRKAITVLFFIGVRCYEA 313
Query: 583 FIASSLEPALLKLKPGDTVLDVGTG--------SGYTAACLGYMVR-------PHGKVY- 626
+ +SL P++L+ D++ + G S T + V +V
Sbjct: 314 YPNTSLPPSILE----DSL-ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 627 SL----DHM------EYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRV 670
SL ++ + L + +RK A P D SR+
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNL-TLRKAKA--------------PSGLDQSRI 407
Score = 41.6 bits (97), Expect = 0.001
Identities = 55/354 (15%), Positives = 101/354 (28%), Gaps = 109/354 (30%)
Query: 5 FASAPHGKLGLT----GTLHGNDQACTDLLTILYDC-------IVSRSFHVLQHFADLLM 53
F + G L G GN + L LY ++ S L
Sbjct: 146 FRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI---- 199
Query: 54 GERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNF---ELLQIHGAQE 110
R ++ G +L+ L N + + ++Q+ A
Sbjct: 200 --RTTLDAEKVFTQG--LNILE----WLENPSNTPDKDYLLSIPISCPLIGVIQL--AHY 249
Query: 111 YITRKTEGSEEDEM------LTG---SIL---------DWP------------------- 133
+T K G E+ TG ++ W
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 134 --------YLEEEVVTQNDQIGRNSP------RDLKCKLPWSKIFDFERESNDSDSADSQ 179
L ++ + + P + L ++ D+ ++N A Q
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN----LTQEQVQDYVNKTNSHLPAGKQ 365
Query: 180 --------QRSLEL-GPVEIKLQLNSFQTSCLKVKRLI-LQKAHSESSDRD-NF--EYIR 226
++L + GP + L + K K L ++ S+R F ++
Sbjct: 366 VEISLVNGAKNLVVSGPPQ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 227 VNQP--SIVMRS-EDLIEEMIKNQVFCIKLGDI---VGCDFCGK--QLLSKAVT 272
V P S ++ DLI + + DI V F G ++LS +++
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Score = 34.3 bits (78), Expect = 0.17
Identities = 46/286 (16%), Positives = 87/286 (30%), Gaps = 107/286 (37%)
Query: 439 SVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGT--------YNLCQS 490
+ Q+V W + D+ + + ++ N + + + G Y+
Sbjct: 1641 AAQDV----W---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 491 NQHCDFTLRNTISF------SSHFIFS------RKMKNTAVQPLLALVGMLVALCVSEFD 538
D L+ F S+ + F + T QP L L+ A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QPALTLMEK--AA------ 1743
Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPY--H---DYS-------VMLENCSYLNSPSFIAS 586
DL + P + H +Y+ VM
Sbjct: 1744 ------FEDL-----KSKGLIPADATFAGHSLGEYAALASLADVM--------------- 1777
Query: 587 SLEPALLKL--KPGDTV-----LDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNF 637
S+E +L+++ G T+ D S Y + P +S + ++Y+V
Sbjct: 1778 SIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMI----AINPGRVAASFSQEALQYVV-- 1830
Query: 638 SKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIK 683
E + K L+ E +VN + QQ +G+++
Sbjct: 1831 --ERVGKRTGWLV-E-IVNY--NVENQQ------YVA----AGDLR 1860
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 40.4 bits (94), Expect = 7e-04
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKL-KP 597
M +L + K+ ++ LE Y S A L
Sbjct: 4 MGIKNDLEIRLQKLQ----------QQGNFKNYLE--QYPTDASTAAYFLIEIYNDGNIG 51
Query: 598 GDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
G +V+D GTG+G + LG V + D + +K N +
Sbjct: 52 GRSVIDAGTGNGILACGSYLLG-----AESVTAFDIDPDAIETAKRNCGGVN 98
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 40.5 bits (95), Expect = 0.001
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
++D+ +G+G L R K+ ++ E L + +K ++ N
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLST--RTKAKIVGVEIQERLADMAKRSVAYNQ 96
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRK 644
ALL ++ GD VLDVG G G A + +V + VN +
Sbjct: 55 ALLDVRSGDRVLDVGCGIGKPAV---RLATARDVRVTGISISRPQVNQANARATA 106
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 40.4 bits (94), Expect = 0.001
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD----HMEYLVNFSKENIRKN 645
++ G VL +G SG T + + ++ +GK Y ++ + L+ ++ R N
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--RPN 126
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRKNH 646
+ ++L VLD+G+G G Y+ +G + +D +VN + E + N+
Sbjct: 49 SDIELNENSKVLDIGSGLGGGCM---YINEKYGAHTHGIDICSNIVNMANERVSGNN 102
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 39.6 bits (93), Expect = 0.001
Identities = 7/53 (13%), Positives = 26/53 (49%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+++ VL++G GY+A + +++P ++ +++ +++ +
Sbjct: 53 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 39.9 bits (92), Expect = 0.002
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L+P + G VLD+G G+ + P ++ LD L++ +++NIR
Sbjct: 38 RVLKPEWFR---GRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHY 93
Query: 646 HAHLLDEGVVNIMRTLPPQQDASRVN 671
+ L + + +
Sbjct: 94 LSEELRLPPQTLEGDPGAEGEEGTTT 119
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
+ L + D+G G+G L V G+V LD + ++ N R++
Sbjct: 41 IDNLTEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQS 92
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 39.1 bits (91), Expect = 0.003
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRKNHAHL 649
+ +L + D+G G+G ++ ++ +D + EN K +
Sbjct: 40 FINELTDDAKIADIGCGTGGQTL---FLADYVKGQITGIDLFPDFIEIFNENAVKANCAD 96
Query: 650 LDEGVVNIMRTLP 662
+G+ M LP
Sbjct: 97 RVKGITGSMDNLP 109
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 38.9 bits (90), Expect = 0.003
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKN-HA 647
+KPG +VL +G SG TA+ + +V GK++ ++ + LV +E R+N
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVP 126
Query: 648 HLLDEGVVNIMRTLPPQQDASRVNISVEPQ 677
L D R L P+ D +++ Q
Sbjct: 127 ILGDATKPEEYRALVPKVDVIFEDVAQPTQ 156
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 38.4 bits (90), Expect = 0.004
Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L+++ +L++GT GY++ + V +++ E ++ ++K+N+
Sbjct: 66 LIRMNNVKNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLAT 117
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.0 bits (88), Expect = 0.006
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
IA+++ A+ L++G G+G A L + + +LD
Sbjct: 26 IATAMASAVHPKGEEPVFLELGVGTGRIALPL---IARGYRYIALD 68
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 38.1 bits (88), Expect = 0.006
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKN 645
+ +KPG VL +G SG T + + +V P G VY+++ L+N +K+ R N
Sbjct: 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTN 127
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 38.0 bits (89), Expect = 0.006
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
LLK+ +L++GT GY+A + + P + S++ E + ++++
Sbjct: 49 LLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKA 100
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 38.3 bits (89), Expect = 0.006
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD 651
L ++D+G G+G L P KV +D V S+ N+ N LD
Sbjct: 218 LPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALD 275
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 37.7 bits (87), Expect = 0.007
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI---RKNHAHL 649
L P VL+ G G G AA + + D FS E + R N H
Sbjct: 46 LTPQTRVLEAGCGHGPDAA---RFGPQAARWAAYD-------FSPELLKLARANAPHA 93
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 37.3 bits (87), Expect = 0.008
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+ + D +LD+G G G L D + +KENI+ N+
Sbjct: 48 VVVDKDDDILDLGCGYGVIGIALA---DEVKSTTMADINRRAIKLAKENIKLNN 98
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 37.6 bits (87), Expect = 0.009
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
+ +K VLDVG G GY + R K +D E ++ KE
Sbjct: 44 IPFFEQYVKKEAEVLDVGCGDGYGTY---KLSRTGYKAVGVDISEVMIQKGKERGEGPDL 100
Query: 648 HLL 650
+
Sbjct: 101 SFI 103
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 37.5 bits (87), Expect = 0.009
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRK 644
L+ LD+G G G A ++VR G + L+ ++E +
Sbjct: 76 MTGVLQRQAKGLDLGAGYGGAAR---FLVRKFGVSIDCLNIAPVQNKRNEEYNNQ 127
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.5 bits (87), Expect = 0.010
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
+L++KPG +LD+G+GSG R HG
Sbjct: 30 RVLRMKPGTRILDLGSGSGEMLC---TWARDHG 59
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 36.8 bits (85), Expect = 0.014
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 588 LEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
LEP L+K +K VLD+ G G + + +V +D E ++ ++E +
Sbjct: 28 LEPLLMKYMKKRGKVLDLACGVGGFSF---LLEDYGFEVVGVDISEDMIRKAREYAKSRE 84
Query: 647 AHLLDEGVVNIMRTLP 662
+++ E +V R L
Sbjct: 85 SNV--EFIVGDARKLS 98
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 37.3 bits (86), Expect = 0.014
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
+ + E + G VLD+G G G L R +V ++ V ++ +
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLA---RMGAEVVGVEDDLASVLSLQKGL 275
Query: 643 RKNH 646
N
Sbjct: 276 EANA 279
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 37.3 bits (87), Expect = 0.016
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 564 PYHDYSVMLEN-CSYLNSPSF---------IASSLEPALLKLKPGDTVLDV--GTGSGYT 611
+ ++ ++ S +F AS++ +L KPG+TV+D+ G G T
Sbjct: 216 ERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPG-GKT 274
Query: 612 AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
M + GK+Y+ D + + K+ +++
Sbjct: 275 THLAELM-KNKGKIYAFDVDKMRMKRLKDFVKRMGIK 310
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 36.3 bits (84), Expect = 0.018
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
L PG+++L+VG G+GY L P+ + ++
Sbjct: 34 LPPGESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 36.2 bits (83), Expect = 0.020
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKN 645
+ +K +L +G +G T + + + G VY++++ M L++ E R+N
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE--REN 123
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 36.0 bits (83), Expect = 0.021
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACL---GYMV 619
+++L L +L G +L++G G+GY A + G+ V
Sbjct: 31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDV 68
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 36.0 bits (83), Expect = 0.021
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACL 615
L VL++ +G+GY L
Sbjct: 40 RLRAGNIRGDVLELASGTGYWTRHL 64
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 36.3 bits (84), Expect = 0.022
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 588 LEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L P + L+ D +LD+G GSG + + V +D + E IR
Sbjct: 20 LYPIIHNYLQEDDEILDIGCGSGKISL---ELASKGYSVTGID-------INSEAIRLAE 69
Query: 647 AHLLDEGVVN 656
G+
Sbjct: 70 TAARSPGLNQ 79
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 36.4 bits (84), Expect = 0.023
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
LL L G + D+G G+G + L VY+++
Sbjct: 28 NLLNLPKGSVIADIGAGTGGYSVAL---ANQGLFVYAVE 63
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 36.4 bits (85), Expect = 0.025
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
L LKPG T+LD+G G G T V
Sbjct: 86 LDLKPGMTLLDIGCGWGTTMR---RAVERFD 113
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 36.2 bits (83), Expect = 0.025
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
++DVG G G + ++P ++ D
Sbjct: 32 YHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 36.4 bits (84), Expect = 0.028
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 567 DYSVMLEN-----CSYLNSPSFIASS-----LEPALLKLKPGDTVLDVGTGSGYTAACLG 616
D + + + + + S L L + P DT++D G G G +
Sbjct: 77 DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMV--- 133
Query: 617 YMVRPHG 623
R G
Sbjct: 134 MAHRRFG 140
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 35.8 bits (82), Expect = 0.030
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACL 615
+ L L P ++D G+G L
Sbjct: 43 VVVDLPRFELLFNPELPLIDFACGNGTQTKFL 74
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 36.0 bits (83), Expect = 0.031
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654
LK VLD+G G+G + ++ +V +D SKE + + V
Sbjct: 52 LKNPCRVLDLGGGTGKWSL---FLQERGFEVVLVD-------PSKEMLEVAREKGVKNVV 101
Query: 655 VNIMRTLP 662
LP
Sbjct: 102 EAKAEDLP 109
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 36.0 bits (83), Expect = 0.032
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
A + L+ D+G G G + L + +D
Sbjct: 27 AQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGID 64
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 36.0 bits (84), Expect = 0.032
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
L++ TV D+GTGSG + V++ D V +++N ++
Sbjct: 117 ELIRKYGIKTVADIGTGSGAIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHGV 171
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 36.0 bits (84), Expect = 0.033
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
L L+PG T+LDVG G G T V +
Sbjct: 60 LGLQPGMTLLDVGCGWGATMM---RAVEKYD 87
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 35.4 bits (81), Expect = 0.036
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 586 SSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
SS L L+P D +L +G G+ + L + V S+D+ +V +
Sbjct: 30 SSFRALLEPELRPEDRILVLGCGNSALSYEL--FLGGFPNVTSVDYSSVVVAAMQACYAH 87
Query: 645 N 645
Sbjct: 88 V 88
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 35.2 bits (81), Expect = 0.038
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+ K VL+ G G+G ++ VY ++
Sbjct: 39 EDVVNKSFGNVLEFGVGTGNLTN---KLLLAGRTVYGIE 74
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 35.5 bits (82), Expect = 0.039
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 590 PALLKLKP---GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
PAL + P G ++D+G G G+ V LD
Sbjct: 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWA--HEHGASYVLGLD 73
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 35.2 bits (81), Expect = 0.039
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMV 619
A+ L P +++G G+G A L +
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLKIKI 69
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 35.7 bits (83), Expect = 0.045
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
L L+PG T+LD+G G G T + V +
Sbjct: 68 LNLEPGMTLLDIGCGWGSTMR---HAVAEYD 95
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 35.4 bits (82), Expect = 0.055
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 13/103 (12%)
Query: 557 FCPPNRNPYHDY-----SVMLENCSYLNSP-SFIASSLEPA---LLK---LKPGDTVLDV 604
F + P D ++ + P F L+ LL VLDV
Sbjct: 144 FGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDV 203
Query: 605 GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
G G+G + P ++ D V S+ + N
Sbjct: 204 GCGAGVLSVAFA-RHSPKIRLTLCDVSAPAVEASRATLAANGV 245
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 34.8 bits (81), Expect = 0.064
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 589 EPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
L+ G+ L++GTG A + + KV + + E +++ NI +N++
Sbjct: 49 LKTFLR--GGEVALEIGTGHTAMMALMAEK-FFNCKVTATEVDEEFFEYARRNIERNNS 104
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 35.1 bits (80), Expect = 0.080
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 588 LEPALLKLKPGDTVLDVG--TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
LL+ + ++D G G A +G +V+ ++ + + +R+
Sbjct: 217 FRSGLLRFSDSEKMVDCGASIGE-SLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 275
Query: 646 H 646
Sbjct: 276 T 276
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 33.9 bits (77), Expect = 0.11
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 543 KELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVL 602
+E L I + + P LN ++ + +
Sbjct: 24 REDFGLSIDIPLERLIPTVPLR-------------LNYIHWVEDLIGHQDSDKSTLRRGI 70
Query: 603 DVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
D+GTG+ LG + + + N++K+N+ +N+
Sbjct: 71 DIGTGASCIYPLLGAT-LNGWYFLATEVDDMCFNYAKKNVEQNN 113
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 34.1 bits (78), Expect = 0.11
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVN 636
+ S + + L + K VLD+G G G L + +D E ++
Sbjct: 21 FRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIK 77
Query: 637 FSKENIRKNHAHLLDE 652
F + + ++
Sbjct: 78 FCEGKFNVVKSDAIEY 93
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 33.6 bits (77), Expect = 0.14
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 588 LEPALLKL---KPGDTVLDVGTGSGYTAA 613
+ A+L + + VLD+G G G+
Sbjct: 40 TDQAILLAILGRQPERVLDLGCGEGWLLR 68
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 33.9 bits (77), Expect = 0.17
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNH 646
+ VLDVG G+G L G KV +D E + + + IR N
Sbjct: 61 HIFKDKVVLDVGCGTGI----LSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNK 110
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 33.8 bits (78), Expect = 0.17
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
AS L LL PG V+D G + L +++ GK+++ D
Sbjct: 90 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFD 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.17
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 23/52 (44%)
Query: 308 KKGISKADAEIISSLKDCSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIE 359
K+ + K +SLK Y ++ +L I + +E
Sbjct: 19 KQALKKLQ----ASLK--------------LYADDSAPALAIKA-----TME 47
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 33.7 bits (78), Expect = 0.18
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 19/82 (23%)
Query: 562 RNPYHDYSVMLEN-CSYLNSPSF---------IASSLEPALLKLKPGDTVLDV----GTG 607
+ + +V LE P F ++ L + G+ +LD+ G
Sbjct: 201 PHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPG-- 258
Query: 608 SGYTAACLGYMVRPHGKVYSLD 629
G T L P +V ++D
Sbjct: 259 -GKTTHILEVA--PEAQVVAVD 277
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 33.2 bits (76), Expect = 0.21
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 577 YLNSPSFIASSLEPALLKL--KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL 634
Y +++ P LLK K VLD+G SG A + +V ++
Sbjct: 10 YEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGA---AIKENGTRVSGIE----- 61
Query: 635 VNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDAS 668
E + L + +I P ++
Sbjct: 62 --AFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQ 93
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 32.5 bits (74), Expect = 0.22
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
++ + VLD+GT +G L R V S D
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQL----RKRNTVVSTD 51
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 32.5 bits (74), Expect = 0.26
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACL---GYMV 619
+LDVG+G+G L G+ +
Sbjct: 35 EPWATGVDGVILDVGSGTGRWTGHLASLGHQI 66
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 33.1 bits (75), Expect = 0.28
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNH 646
L VLDVG G+G L HG V +D + +KE + N
Sbjct: 35 DLFKDKIVLDVGCGTGI----LSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNG 84
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 33.0 bits (75), Expect = 0.28
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+L TVLD+G G G+ KV +D
Sbjct: 38 KMLPDFNQKTVLDLGCGFGWHCIYA--AEHGAKKVLGID 74
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 32.1 bits (73), Expect = 0.36
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 589 EPALLK--LKPGDTVLDVGTGSGYTAACL---GYMV 619
E L+ G +LD G G G L G+ V
Sbjct: 36 EARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDV 71
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 32.7 bits (74), Expect = 0.37
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACL---GYMV 619
LL+ VLDV G+G + L G+ V
Sbjct: 51 GLLRQHGCHRVLDVACGTGVDSIMLVEEGFSV 82
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 32.8 bits (75), Expect = 0.39
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 591 ALLKL---KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
ALL+L +PG VLD TGSG A + P VY+ D E + ++E
Sbjct: 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA 250
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 32.5 bits (75), Expect = 0.39
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 589 EPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
E AL +L +LD+GTG+G A L RP ++ ++D M V+ ++ N +
Sbjct: 100 EQALARLPEQPCRILDLGTGTGAIALALASE-RPDCEIIAVDRMPDAVSLAQRNAQHLAI 158
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 32.6 bits (75), Expect = 0.40
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 594 KLKPGDTVLDVGTGSGYTAAC 614
++PGD VL G G+GYT
Sbjct: 313 LVQPGDRVLLFGGGAGYTCTA 333
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 32.1 bits (74), Expect = 0.45
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
L ++ G V+DVGTGSG A + P V ++D + ++ N + A
Sbjct: 24 FLKRMPSGTRVIDVGTGSGCIAVSIALA-CPGVSVTAVDLSMDALAVARRNAERFGA 79
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 31.9 bits (73), Expect = 0.49
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
I S+ + G+ +DVGTG G L +VRP LD
Sbjct: 54 ILDSI--VVAPYLQGERFIDVGTGPGLPGIPLS-IVRPEAHFTLLD 96
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 32.0 bits (72), Expect = 0.63
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 585 ASSLEPALLK---LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641
+S + K ++ G V+D+ G G ++ + ++ + ++ N
Sbjct: 78 SSGAVTSSYKSRFIREGTKVVDLTGGLGIDFI---ALMSKASQGIYIERNDETAVAARHN 134
Query: 642 IR 643
I
Sbjct: 135 IP 136
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 32.1 bits (72), Expect = 0.66
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNH 646
G TVLDVGTGSG L G KVY+++ + + + ++ ++ N+
Sbjct: 60 HHFEGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEATK-MADHARALVKANN 109
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 31.9 bits (72), Expect = 0.72
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNH 646
L VLDVG+G+G L G KV ++ + +++ + ++ N
Sbjct: 63 HLFKDKVVLDVGSGTG----ILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANK 112
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 31.3 bits (71), Expect = 0.80
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACL---GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
+K+ LD+G G+G + L GY V + D + +I
Sbjct: 26 EAVKVVKPGKTLDLGCGNGRNSLYLAANGY------DVDAWD-------KNAMSIANVER 72
Query: 648 HLLDEGVVNI 657
E + N+
Sbjct: 73 IKSIENLDNL 82
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 31.3 bits (71), Expect = 0.83
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+LD+G G+G +A L P +D E ++ +K R N
Sbjct: 39 ASVDTENPDILDLGAGTGLLSAFL-MEKYPEATFTLVDMSEKMLEIAKNRFRGNL 92
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 30.8 bits (69), Expect = 1.4
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 590 PALLKL-----KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
P ++ L P L G G G+ M P V LD E + + E
Sbjct: 54 PLIVHLVDTSSLPLGRALVPGCGGGHDVV---AMASPERFVVGLDISESALAKANETYGS 110
Query: 645 NHAHLLDEGVVNIMRTLPPQQ 665
+ V + T P +
Sbjct: 111 SPKAEYFSFVKEDVFTWRPTE 131
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 31.0 bits (70), Expect = 1.5
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
+ D V+D+ G G + K+Y++D + + K+NI+ N
Sbjct: 193 VSLNDVVVDMFAGVGPFSIACKNAK----KIYAIDINPHAIELLKKNIKLNK 240
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 30.3 bits (68), Expect = 1.5
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649
A+LK V+D+G G G + L + ++ +D S + + L
Sbjct: 23 AVLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVD-------VSYSVLERAKDRL 73
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.0 bits (69), Expect = 1.6
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639
S +A ++ +K+ D +D+G+G G Y ++ + +++
Sbjct: 158 SFDLVAQMID--EIKMTDDDLFVDLGSGVG-QVVLQVAAATNCKHHYGVEKADIPAKYAE 214
Query: 640 ENIRKNHAHLLDEGV 654
R+ + G
Sbjct: 215 TMDREFRKWMKWYGK 229
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 30.3 bits (68), Expect = 1.7
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR--KNHAH 648
A LK V+D+G G G L ++ +D S ++ +
Sbjct: 23 AALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDV-------SYRSLEIAQERLD 74
Query: 649 LLDEGVVNIMR 659
L R
Sbjct: 75 RLRLPRNQWER 85
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTA---ACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
++ P +L + G G A A LGY +V ++D S + K
Sbjct: 23 SVANQIPQGKILCLAEGEGRNACFLASLGY------EVTAVD-------QSSVGLAKAKQ 69
Query: 648 HLLDEGV 654
++GV
Sbjct: 70 LAQEKGV 76
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 30.2 bits (68), Expect = 1.8
Identities = 5/55 (9%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
A +L++G+ G + + ++ E ++ ++ ++
Sbjct: 36 AFTPFFRPGNLLELGSFKGDF---TSRLQEHFNDITCVEASEEAISHAQGRLKDG 87
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 30.4 bits (68), Expect = 1.8
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNH 646
VLDVG GSG L + G K+Y+++ + ++ ++ N+
Sbjct: 46 HTDFKDKIVLDVGCGSGI----LSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN 96
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 30.6 bits (70), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 594 KLKPGDTVLDVGTGSG 609
++PGD VL + GSG
Sbjct: 163 GVRPGDDVLVMAAGSG 178
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 30.2 bits (68), Expect = 1.9
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRKNHAHL 649
L L++G +G L PH ++ +D I +
Sbjct: 45 LSLSSGAVSNGLEIGCAAGAFTEKLA----PHCKRLTVID-------VMPRAIGRACQRT 93
Query: 650 LDEGVVNIMRTLPPQQDAS 668
++ T Q +
Sbjct: 94 KRWSHISWAATDILQFSTA 112
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 29.6 bits (66), Expect = 2.8
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 566 HDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKV 625
S +L +++ S A L LD G G G L + + +
Sbjct: 62 ATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNL--LTKLYATT 119
Query: 626 YSLDHMEYLVNFSKENI 642
L+ +++++ +K +
Sbjct: 120 DLLEPVKHMLEEAKREL 136
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 30.2 bits (67), Expect = 3.0
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
++ T++D G GSG L + +D S + + + L
Sbjct: 715 KHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVD-------ISPKGLARAAKMLH 767
Query: 651 DE 652
+
Sbjct: 768 VK 769
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.9 bits (68), Expect = 3.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 594 KLKPGDTVLDVGTGSGYTAA 613
L+ GD V+ GTG
Sbjct: 186 HLRAGDRVVVQGTGGVALFG 205
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential,
copper, transport, cupredoxin, periplasmic, electron
transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A
2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Length = 122
Score = 28.4 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 589 EPALLKLKPGDTVLDVGTGSG-YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
EPA LK+ PGDTV + T G G + S + Y V F+ +
Sbjct: 19 EPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGV 73
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 29.3 bits (66), Expect = 3.4
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 594 KLKPGDTVLDVGTGSGYTAACL--GYMV 619
+++PG + D+G G+G L Y V
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLADHYEV 57
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.0 bits (61), Expect = 3.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 223 EYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKA 270
E P+ + + + + K+ C KL D + C C KQ SKA
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA 68
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACL---GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649
+ VLD+ G+G L GY +V LD E ++ ++ ++ + +
Sbjct: 37 DAKREVRRVLDLACGTGIPTLELAERGY------EVVGLDLHEEMLRVARRKAKERNLKI 90
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.2 bits (65), Expect = 4.1
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 565 YHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTA---ACLGYMVRP 621
+ E+ + K+ VLD+G G G + + LGY
Sbjct: 88 TLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY---- 143
Query: 622 HGKVYSLDHMEYLVNFSKENIRKNHAHL 649
V S DH E + F E K + ++
Sbjct: 144 --DVTSWDHNENSIAFLNETKEKENLNI 169
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 29.1 bits (66), Expect = 4.3
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 594 KLKPGDTVLDVGTGSGYT-AACL 615
+LK GD + +G GSG +
Sbjct: 320 RLKKGDRIALLGIGSGLNCSMAE 342
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 29.3 bits (65), Expect = 4.6
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 593 LKLKPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
VLDVG GSG + R K+Y+++ + ++ ++ N+
Sbjct: 154 HTDFKDKIVLDVGCGSGILSFFAAQAGAR---KIYAVEAST-MAQHAEVLVKSNN 204
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 28.9 bits (65), Expect = 4.7
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 563 NPYHDYS-----VMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACL-- 615
N Y+ ++ ++ + Y FI L D LD+ G+G L
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLV---FDDYLDLACGTGNLTENLCP 57
Query: 616 -GYMV 619
Sbjct: 58 KFKNT 62
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 29.0 bits (64), Expect = 4.8
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
LL + VLD + +G + P +V+ D E K N+ N L
Sbjct: 41 VLLNILNPKIVLDALSATG-IRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 99
Query: 651 DE 652
E
Sbjct: 100 RE 101
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 28.5 bits (64), Expect = 5.7
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 587 SLEPA-LLKLKPGDTVLDVGTGSG 609
S+ A + +T+ DVG G+G
Sbjct: 59 SITAAFYVDFNQVNTICDVGAGAG 82
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.7 bits (64), Expect = 5.8
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
VLD+G G GY P + LD
Sbjct: 85 KATAVLDIGCGEGYYTHAF-ADALPEITTFGLD 116
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 28.4 bits (63), Expect = 6.3
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
P IA + + + D V+D G G +V ++D + ++
Sbjct: 62 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFA---LTGMRVIAIDIDPVKIALARN 118
Query: 641 NIRKN 645
N
Sbjct: 119 NAEVY 123
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 28.6 bits (63), Expect = 6.3
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
+ +D+GTG G L + + +D ++ + +K G+
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLA-INDQNTFYIGIDPVK---ENLFDISKKIIKKPSKGGLS 78
Query: 656 NI 657
N+
Sbjct: 79 NV 80
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 28.7 bits (65), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 594 KLKPGDTVLDVGTGSGYT-AACL 615
L G ++ +G G GY+ A CL
Sbjct: 340 TLARGMRLMLLGFGVGYSWAGCL 362
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 28.6 bits (64), Expect = 6.9
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 543 KELRDLMIKVDR--KDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
K L ++ D ++ DY+ + N + + S LE L+ G+T
Sbjct: 242 KALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENR--DLQAGET 299
Query: 601 VLDVGTGSGYTAACLGYMVRP--HGKVYSLDHMEYL 634
+ GSG + + H L
Sbjct: 300 IGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALL 335
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 6.9
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 140 VTQNDQIGRNSPRDLKCKLPWSKIFDFERESNDSDSADSQQRSLELGPVEIKLQLNSFQT 199
+ Q D++ P ++ K W + + D+ S +Q E +++
Sbjct: 74 IAQADRL-TQEPESIR-K--WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 200 SCLKVKR--LILQKAHSESSDRD 220
K K I KA + D D
Sbjct: 130 QVEKNKINNRIADKAFYQQPDAD 152
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 28.4 bits (64), Expect = 7.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 218 DRDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKL-GDIVGCD 260
+ DN E+ + S + S +E I FCI ++ D
Sbjct: 192 ENDNKEFTEDDLNSANVYSPKQLETFIN---FCISAKMSVLSED 232
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 28.5 bits (63), Expect = 8.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH 630
L G +D+G G L V+ + VYS+D+
Sbjct: 209 LANGMWAVDLGACPGGWTYQL---VKRNMWVYSVDN 241
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 28.3 bits (64), Expect = 8.4
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 24/108 (22%)
Query: 585 ASSLEPA-LLKLKPGDTVLDV----GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639
SS+ P +L + D +LD+ G + + A + G + +++ ++ ++
Sbjct: 70 ISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMK----NKGTIVAVE-----ISKTR 120
Query: 640 ENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD 687
K++ + + GV+N + D + + + D
Sbjct: 121 TKALKSNINRM--GVLNTIII---NADMRKY-----KDYLLKNEIFFD 158
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 28.6 bits (63), Expect = 8.6
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 559 PPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYT 611
P +Y+V + + F + + ++ G T++ T + +
Sbjct: 221 PLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMIS--TSTPHM 271
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 28.3 bits (64), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 594 KLKPGDTVLDVGTGSGYT-AACL 615
++PG VL + GSG T A L
Sbjct: 326 DIQPGQRVLVLTYGSGATWGAAL 348
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 28.1 bits (62), Expect = 9.5
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 20/112 (17%)
Query: 566 HDYSVMLENCSYLNSPSFIAS-----SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR 620
ML +++S +S LD G G G L ++
Sbjct: 43 PTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRL--LLP 100
Query: 621 PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI------MRTLPPQQD 666
+V +D +++ + + +L +EG ++ P+ D
Sbjct: 101 LFREVDMVD-------ITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPD 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,933,622
Number of extensions: 581803
Number of successful extensions: 1525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1496
Number of HSP's successfully gapped: 178
Length of query: 687
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 587
Effective length of database: 3,909,693
Effective search space: 2294989791
Effective search space used: 2294989791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.7 bits)