BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1497
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 7 SDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66
+DI +Y + S + + GSIT+ R + + +S + ++ QL A + E ++V
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509
Query: 67 A 67
A
Sbjct: 510 A 510
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCY--IMQD---NQLH 55
M + +D++ +T TE + +NG+E N + K+ Y I++D N+LH
Sbjct: 35 MNNSLSVTLDRFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMNIVRDLAGNRLH 94
Query: 56 ANLTVE 61
A + E
Sbjct: 95 ARIESE 100
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCY--IMQD---NQLH 55
M + +D++ +T TE + +NG+E N + K+ Y I++D N+LH
Sbjct: 35 MNNSLSVTLDRFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMNIVRDLAGNRLH 94
Query: 56 ANLTVE 61
A + E
Sbjct: 95 ARIESE 100
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCY--IMQD---NQLH 55
M + +D++ +T TE + +NG+E N + K+ Y I++D N+LH
Sbjct: 35 MNNSLSVTLDRFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMNIVRDLAGNRLH 94
Query: 56 ANLTVE 61
A + E
Sbjct: 95 ARIESE 100
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 59 TVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLH 94
T A + A AL++G DL+ R D+ + +D ++H
Sbjct: 106 TAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVH 141
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 38 LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFL 93
LS F K++ +++ N LH+ ++V A+ A +L K RKD + +L
Sbjct: 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYL 159
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 4 NFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQF 41
N+ ++D YLL TSG ++GT + ++ H NLS F
Sbjct: 171 NYPENLDAYLLYTSG---STGTPKGVRVSRH--NLSSF 203
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 49 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL 99
+ D + + V+E A LK+ + + + A K C FL G +
Sbjct: 357 LSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLAFEGEM 407
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 49 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL 99
+ D + + V+E A LK+ + + + A K C FL G +
Sbjct: 357 LSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLAFEGEM 407
>pdb|3K1Q|I Chain I, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|J Chain J, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|K Chain K, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|O Chain O, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|P Chain P, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|Q Chain Q, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|U Chain U, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|V Chain V, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|W Chain W, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|X Chain X, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 639
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 91 HFLHLSGHLPRGTLLNLSGLWGIGVFNVLSPLAT 124
+ LHL R T+ + ++G+G F + SP ++
Sbjct: 409 NMLHLQATFERETITGIPYIYGLGTFLIPSPTSS 442
>pdb|3IYL|A Chain A, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|B Chain B, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|C Chain C, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|D Chain D, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|E Chain E, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|F Chain F, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|G Chain G, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|H Chain H, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|I Chain I, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|J Chain J, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|K Chain K, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|L Chain L, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|M Chain M, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|N Chain N, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|O Chain O, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|P Chain P, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Q Chain Q, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|R Chain R, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|S Chain S, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|T Chain T, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 648
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 91 HFLHLSGHLPRGTLLNLSGLWGIGVFNVLSPLAT 124
+ LHL R T+ + ++G+G F + SP ++
Sbjct: 418 NMLHLQATFERETITGIPYIYGLGTFLIPSPTSS 451
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 276 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 90 CHFLHLSGHLPRGTLLNLSGLWGIGVFNVL 119
C ++ + G L G + L+GLWG+ + L
Sbjct: 285 CGYIGVGGALIIGVVAGLAGLWGVTMLKRL 314
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 93 LHLSGHLPRGTLLNLSGLWGIGVFNVLSPLATYE 126
++L+G++P + + G G+G+ ++LSP+ E
Sbjct: 120 VYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,487,769
Number of Sequences: 62578
Number of extensions: 116797
Number of successful extensions: 283
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 33
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)