Query psy1497
Match_columns 127
No_of_seqs 175 out of 1237
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:12:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.9E-35 6.3E-40 206.3 9.9 117 3-127 35-163 (240)
2 COG3839 MalK ABC-type sugar tr 100.0 4.7E-35 1E-39 218.5 11.3 117 2-127 35-160 (338)
3 COG3842 PotA ABC-type spermidi 100.0 1.5E-34 3.2E-39 216.9 10.0 118 2-127 37-163 (352)
4 COG1125 OpuBA ABC-type proline 100.0 9.5E-35 2.1E-39 208.0 8.5 117 2-127 33-162 (309)
5 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-34 5.6E-39 205.3 9.8 114 3-127 36-157 (248)
6 COG1135 AbcC ABC-type metal io 100.0 9.8E-33 2.1E-37 202.0 9.8 114 3-125 39-164 (339)
7 COG1136 SalX ABC-type antimicr 100.0 4.5E-32 9.8E-37 192.8 12.1 117 2-127 37-169 (226)
8 COG2884 FtsE Predicted ATPase 100.0 2.7E-32 5.9E-37 188.1 9.9 117 2-127 34-164 (223)
9 COG1118 CysA ABC-type sulfate/ 100.0 1.2E-31 2.6E-36 196.1 10.0 119 2-127 34-164 (345)
10 COG1131 CcmA ABC-type multidru 100.0 2.9E-30 6.3E-35 191.1 11.9 116 3-127 38-163 (293)
11 COG1127 Ttg2A ABC-type transpo 100.0 3.3E-30 7.2E-35 183.2 9.5 117 3-127 41-172 (263)
12 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-29 3E-34 191.8 12.1 117 2-127 36-161 (356)
13 COG4175 ProV ABC-type proline/ 100.0 1.8E-30 3.8E-35 190.8 7.0 114 3-125 61-187 (386)
14 TIGR03265 PhnT2 putative 2-ami 100.0 2E-29 4.3E-34 190.8 12.6 117 2-127 36-161 (353)
15 PRK11432 fbpC ferric transport 100.0 2.3E-29 5E-34 190.3 12.7 117 2-127 38-163 (351)
16 TIGR01186 proV glycine betaine 100.0 5.6E-29 1.2E-33 188.8 12.6 117 2-127 25-156 (363)
17 COG4525 TauB ABC-type taurine 100.0 2.9E-29 6.4E-34 174.3 10.1 114 3-127 38-159 (259)
18 PRK11607 potG putrescine trans 100.0 6.4E-29 1.4E-33 189.4 12.7 117 2-127 51-176 (377)
19 COG3638 ABC-type phosphate/pho 100.0 1E-29 2.2E-34 180.3 7.8 119 3-127 37-174 (258)
20 PRK09452 potA putrescine/sperm 100.0 6.2E-29 1.4E-33 189.3 12.3 117 2-127 46-171 (375)
21 TIGR03258 PhnT 2-aminoethylpho 100.0 8.3E-29 1.8E-33 187.9 12.6 117 2-127 37-164 (362)
22 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-28 2.3E-33 186.1 12.7 117 2-127 37-167 (343)
23 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-29 2.3E-34 176.8 6.3 116 3-127 35-160 (245)
24 COG1120 FepC ABC-type cobalami 100.0 2.2E-29 4.9E-34 182.1 8.1 119 3-127 35-165 (258)
25 PRK13537 nodulation ABC transp 100.0 2.1E-28 4.6E-33 182.1 12.5 117 2-127 39-165 (306)
26 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-28 2.6E-33 177.7 9.9 119 3-127 37-166 (254)
27 COG1117 PstB ABC-type phosphat 100.0 1.1E-28 2.4E-33 173.0 8.9 116 2-127 39-176 (253)
28 TIGR01188 drrA daunorubicin re 100.0 3.5E-28 7.6E-33 180.6 12.0 117 2-127 25-151 (302)
29 PRK11000 maltose/maltodextrin 100.0 4.6E-28 9.9E-33 184.3 12.7 117 2-127 35-160 (369)
30 PRK10851 sulfate/thiosulfate t 100.0 4.9E-28 1.1E-32 183.2 12.6 120 2-127 34-163 (353)
31 TIGR00960 3a0501s02 Type II (G 100.0 7.8E-28 1.7E-32 170.7 11.5 117 2-127 35-165 (216)
32 COG3840 ThiQ ABC-type thiamine 100.0 9.5E-29 2.1E-33 169.9 6.3 107 3-118 32-141 (231)
33 TIGR01187 potA spermidine/putr 100.0 1.7E-27 3.7E-32 178.6 12.9 118 1-127 1-127 (325)
34 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-27 4E-32 170.8 12.5 118 2-127 32-163 (235)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-27 3.1E-32 169.5 11.6 117 2-127 36-167 (218)
36 cd03266 ABC_NatA_sodium_export 99.9 1.6E-27 3.4E-32 169.3 11.4 117 2-127 37-163 (218)
37 TIGR03522 GldA_ABC_ATP gliding 99.9 2.2E-27 4.8E-32 176.2 12.4 117 2-127 34-160 (301)
38 PRK13536 nodulation factor exp 99.9 2.7E-27 5.8E-32 178.4 12.8 117 2-127 73-199 (340)
39 PRK11153 metN DL-methionine tr 99.9 2.7E-27 5.9E-32 178.6 12.7 117 2-127 37-167 (343)
40 cd03265 ABC_DrrA DrrA is the A 99.9 2.7E-27 5.8E-32 168.4 11.8 117 2-127 32-158 (220)
41 cd03259 ABC_Carb_Solutes_like 99.9 2.6E-27 5.6E-32 167.7 11.6 117 2-127 32-157 (213)
42 COG0410 LivF ABC-type branched 99.9 6.9E-28 1.5E-32 170.4 8.5 115 3-127 36-163 (237)
43 COG4181 Predicted ABC-type tra 99.9 9.3E-28 2E-32 163.8 8.8 117 2-127 42-173 (228)
44 COG1122 CbiO ABC-type cobalt t 99.9 1.2E-27 2.6E-32 171.9 9.7 116 3-127 37-165 (235)
45 COG4148 ModC ABC-type molybdat 99.9 2.3E-28 5E-33 177.3 6.0 111 2-127 30-155 (352)
46 PRK10070 glycine betaine trans 99.9 3.8E-27 8.2E-32 180.7 12.7 117 2-127 60-191 (400)
47 PRK11629 lolD lipoprotein tran 99.9 4.9E-27 1.1E-31 168.5 12.4 117 2-127 41-172 (233)
48 TIGR01288 nodI ATP-binding ABC 99.9 4.6E-27 1E-31 174.6 12.5 117 2-127 36-162 (303)
49 cd03269 ABC_putative_ATPase Th 99.9 3.3E-27 7.1E-32 166.8 11.1 116 2-127 32-155 (210)
50 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.5E-27 1.2E-31 166.8 12.3 115 2-127 36-158 (220)
51 cd03264 ABC_drug_resistance_li 99.9 3.6E-27 7.8E-32 166.8 10.9 117 2-127 31-157 (211)
52 cd03292 ABC_FtsE_transporter F 99.9 7.2E-27 1.6E-31 165.4 11.7 117 2-127 33-163 (214)
53 cd03263 ABC_subfamily_A The AB 99.9 7.1E-27 1.5E-31 166.1 11.6 117 2-127 34-160 (220)
54 COG0411 LivG ABC-type branched 99.9 1.4E-27 3.1E-32 170.0 7.7 120 2-127 36-176 (250)
55 COG1137 YhbG ABC-type (unclass 99.9 1.9E-28 4.2E-33 170.4 2.9 119 2-127 36-166 (243)
56 TIGR02673 FtsE cell division A 99.9 1.2E-26 2.5E-31 164.4 11.9 117 2-127 34-164 (214)
57 cd03301 ABC_MalK_N The N-termi 99.9 1.1E-26 2.4E-31 164.4 11.7 117 2-127 32-157 (213)
58 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-26 3E-31 164.7 12.2 117 2-127 37-168 (221)
59 cd03258 ABC_MetN_methionine_tr 99.9 1.4E-26 3E-31 166.0 12.1 117 2-127 37-167 (233)
60 TIGR03608 L_ocin_972_ABC putat 99.9 1.5E-26 3.3E-31 162.8 12.0 117 2-127 30-161 (206)
61 TIGR03415 ABC_choXWV_ATP choli 99.9 1.6E-26 3.6E-31 176.2 12.6 117 2-127 56-191 (382)
62 cd03218 ABC_YhbG The ABC trans 99.9 1.7E-26 3.7E-31 165.3 12.0 117 2-127 32-160 (232)
63 cd03219 ABC_Mj1267_LivG_branch 99.9 2.1E-26 4.6E-31 165.2 12.4 120 2-127 32-170 (236)
64 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.8E-26 3.8E-31 166.4 12.0 117 2-127 33-162 (242)
65 PRK10908 cell division protein 99.9 1.8E-26 3.9E-31 164.4 11.9 117 2-127 34-164 (222)
66 cd03296 ABC_CysA_sulfate_impor 99.9 1.6E-26 3.5E-31 166.3 11.8 120 2-127 34-163 (239)
67 cd03262 ABC_HisP_GlnQ_permease 99.9 2.1E-26 4.6E-31 162.8 11.7 118 2-127 32-162 (213)
68 TIGR02142 modC_ABC molybdenum 99.9 2E-26 4.2E-31 174.6 12.3 115 2-127 29-158 (354)
69 COG4152 ABC-type uncharacteriz 99.9 5.2E-27 1.1E-31 167.5 8.3 116 2-127 34-157 (300)
70 cd03225 ABC_cobalt_CbiO_domain 99.9 2.6E-26 5.7E-31 162.3 11.6 117 2-127 33-161 (211)
71 TIGR01166 cbiO cobalt transpor 99.9 3E-26 6.5E-31 159.8 11.7 116 2-127 24-154 (190)
72 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.3E-26 5E-31 162.6 11.1 117 2-127 30-155 (211)
73 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.5E-26 7.5E-31 167.4 12.3 117 2-127 56-187 (269)
74 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4E-26 8.6E-31 164.0 12.2 117 2-127 33-159 (236)
75 PRK11248 tauB taurine transpor 99.9 5.2E-26 1.1E-30 165.4 12.2 115 2-127 33-155 (255)
76 COG4598 HisP ABC-type histidin 99.9 3.3E-27 7.1E-32 162.5 5.5 117 3-127 39-179 (256)
77 KOG0061|consensus 99.9 2.2E-26 4.8E-31 184.3 11.1 119 3-127 63-197 (613)
78 cd03256 ABC_PhnC_transporter A 99.9 3.8E-26 8.2E-31 164.2 11.3 120 2-127 33-171 (241)
79 cd03234 ABCG_White The White s 99.9 6.1E-26 1.3E-30 162.1 12.3 120 2-127 39-170 (226)
80 PRK10584 putative ABC transpor 99.9 6.2E-26 1.4E-30 162.1 12.2 117 2-127 42-173 (228)
81 PRK13650 cbiO cobalt transport 99.9 3.6E-26 7.9E-31 168.1 11.2 117 2-127 39-167 (279)
82 TIGR01277 thiQ thiamine ABC tr 99.9 5.5E-26 1.2E-30 161.0 11.6 117 2-127 30-155 (213)
83 cd03226 ABC_cobalt_CbiO_domain 99.9 2.9E-26 6.2E-31 161.6 10.0 113 2-127 32-153 (205)
84 PRK11144 modC molybdate transp 99.9 4.1E-26 8.9E-31 172.7 11.6 111 2-127 30-155 (352)
85 PRK11831 putative ABC transpor 99.9 8.8E-26 1.9E-30 165.2 12.7 118 2-127 39-170 (269)
86 PRK11264 putative amino-acid A 99.9 8.9E-26 1.9E-30 163.3 12.5 118 2-127 35-171 (250)
87 PRK13637 cbiO cobalt transport 99.9 8.9E-26 1.9E-30 166.7 12.7 117 2-127 39-171 (287)
88 PRK09493 glnQ glutamine ABC tr 99.9 7.8E-26 1.7E-30 162.8 11.9 118 2-127 33-163 (240)
89 cd03297 ABC_ModC_molybdenum_tr 99.9 9.8E-26 2.1E-30 159.8 12.1 115 2-127 29-158 (214)
90 PRK09536 btuD corrinoid ABC tr 99.9 5.6E-26 1.2E-30 174.3 11.5 120 2-127 35-166 (402)
91 PRK15079 oligopeptide ABC tran 99.9 9.9E-26 2.2E-30 169.4 12.6 119 2-127 53-188 (331)
92 cd03268 ABC_BcrA_bacitracin_re 99.9 5E-26 1.1E-30 160.6 9.9 113 2-127 32-153 (208)
93 TIGR02315 ABC_phnC phosphonate 99.9 5.5E-26 1.2E-30 163.7 10.2 120 2-127 34-172 (243)
94 PRK13635 cbiO cobalt transport 99.9 1.1E-25 2.3E-30 165.7 11.6 117 2-127 39-167 (279)
95 PRK13632 cbiO cobalt transport 99.9 1.1E-25 2.3E-30 165.0 11.5 117 2-127 41-169 (271)
96 PRK13634 cbiO cobalt transport 99.9 1.5E-25 3.1E-30 165.8 12.0 116 2-127 39-172 (290)
97 PRK13647 cbiO cobalt transport 99.9 1.2E-25 2.7E-30 165.0 11.5 117 2-127 37-165 (274)
98 TIGR00972 3a0107s01c2 phosphat 99.9 2.1E-25 4.5E-30 161.2 12.4 117 2-127 33-171 (247)
99 PRK13651 cobalt transporter AT 99.9 1.4E-25 3E-30 167.0 11.8 117 2-127 39-192 (305)
100 PRK10895 lipopolysaccharide AB 99.9 1.5E-25 3.3E-30 161.4 11.4 118 2-127 35-164 (241)
101 PRK11124 artP arginine transpo 99.9 1.9E-25 4.1E-30 161.0 11.9 117 2-127 34-168 (242)
102 cd03260 ABC_PstB_phosphate_tra 99.9 1.4E-25 3.1E-30 160.2 10.8 117 2-127 32-168 (227)
103 PRK13646 cbiO cobalt transport 99.9 1.8E-25 4E-30 164.9 11.7 116 2-127 39-172 (286)
104 TIGR02982 heterocyst_DevA ABC 99.9 2.1E-25 4.5E-30 158.8 11.4 118 2-127 37-168 (220)
105 PRK13641 cbiO cobalt transport 99.9 2.8E-25 6E-30 164.0 12.4 116 2-127 39-172 (287)
106 PRK10771 thiQ thiamine transpo 99.9 1.6E-25 3.4E-30 160.6 10.5 117 2-127 31-156 (232)
107 TIGR01184 ntrCD nitrate transp 99.9 3E-25 6.6E-30 159.1 12.0 117 2-127 17-141 (230)
108 cd03235 ABC_Metallic_Cations A 99.9 1.1E-25 2.4E-30 159.4 9.5 118 2-127 31-159 (213)
109 PRK13538 cytochrome c biogenes 99.9 2.1E-25 4.6E-30 157.2 10.9 114 2-127 33-156 (204)
110 cd03224 ABC_TM1139_LivF_branch 99.9 2.1E-25 4.5E-30 158.7 10.9 115 2-127 32-159 (222)
111 COG1124 DppF ABC-type dipeptid 99.9 1.3E-25 2.8E-30 160.0 9.5 114 3-127 40-168 (252)
112 PRK10619 histidine/lysine/argi 99.9 4.7E-25 1E-29 160.3 12.7 117 2-127 37-179 (257)
113 PRK13644 cbiO cobalt transport 99.9 3.3E-25 7.2E-30 162.7 11.7 117 2-127 34-163 (274)
114 cd03267 ABC_NatA_like Similar 99.9 4.5E-25 9.8E-30 158.7 12.0 117 2-127 53-180 (236)
115 TIGR00955 3a01204 The Eye Pigm 99.9 2.5E-25 5.4E-30 178.7 11.7 120 2-127 57-193 (617)
116 PRK13643 cbiO cobalt transport 99.9 4.9E-25 1.1E-29 162.8 12.3 116 2-127 38-171 (288)
117 TIGR03005 ectoine_ehuA ectoine 99.9 5E-25 1.1E-29 159.7 12.0 118 2-127 32-173 (252)
118 PRK13640 cbiO cobalt transport 99.9 4.1E-25 8.8E-30 162.8 11.6 117 2-127 39-170 (282)
119 COG3845 ABC-type uncharacteriz 99.9 1.9E-25 4.2E-30 171.6 10.1 119 3-127 37-167 (501)
120 cd03299 ABC_ModC_like Archeal 99.9 6.5E-25 1.4E-29 157.8 12.2 117 2-127 31-156 (235)
121 PRK13549 xylose transporter AT 99.9 4.6E-25 9.9E-30 173.6 12.4 120 2-127 37-170 (506)
122 PRK13649 cbiO cobalt transport 99.9 6.4E-25 1.4E-29 161.4 12.3 116 2-127 39-172 (280)
123 PRK13636 cbiO cobalt transport 99.9 6E-25 1.3E-29 161.9 12.1 117 2-127 38-168 (283)
124 TIGR03411 urea_trans_UrtD urea 99.9 7.7E-25 1.7E-29 157.7 12.3 120 2-127 34-170 (242)
125 PRK13631 cbiO cobalt transport 99.9 6.4E-25 1.4E-29 164.4 12.3 116 2-127 58-203 (320)
126 PRK11300 livG leucine/isoleuci 99.9 5.9E-25 1.3E-29 159.4 11.6 120 2-127 37-180 (255)
127 PRK11308 dppF dipeptide transp 99.9 8.3E-25 1.8E-29 164.2 12.8 118 2-127 47-181 (327)
128 PRK13648 cbiO cobalt transport 99.9 7.2E-25 1.6E-29 160.4 12.1 117 2-127 41-169 (269)
129 cd03257 ABC_NikE_OppD_transpor 99.9 8.8E-25 1.9E-29 155.9 12.1 118 2-127 37-172 (228)
130 PRK14247 phosphate ABC transpo 99.9 1.1E-24 2.4E-29 157.6 12.8 119 2-127 35-173 (250)
131 cd03300 ABC_PotA_N PotA is an 99.9 1.1E-24 2.3E-29 156.3 12.5 117 2-127 32-157 (232)
132 PRK10762 D-ribose transporter 99.9 6E-25 1.3E-29 172.7 12.2 120 2-127 36-168 (501)
133 PRK13548 hmuV hemin importer A 99.9 6.9E-25 1.5E-29 159.7 11.6 117 2-127 34-167 (258)
134 TIGR00968 3a0106s01 sulfate AB 99.9 7.9E-25 1.7E-29 157.5 11.8 117 2-127 32-157 (237)
135 PLN03211 ABC transporter G-25; 99.9 7.5E-25 1.6E-29 176.8 12.4 119 2-127 100-233 (659)
136 PRK13543 cytochrome c biogenes 99.9 6.8E-25 1.5E-29 155.7 10.7 114 2-127 43-164 (214)
137 PRK11247 ssuB aliphatic sulfon 99.9 6.2E-25 1.3E-29 160.0 10.7 109 2-127 44-160 (257)
138 PRK11288 araG L-arabinose tran 99.9 1.1E-24 2.3E-29 171.3 12.8 120 2-127 36-167 (501)
139 PRK13652 cbiO cobalt transport 99.9 1.2E-24 2.6E-29 159.9 12.2 117 2-127 36-164 (277)
140 PRK13642 cbiO cobalt transport 99.9 1.1E-24 2.4E-29 160.0 11.9 117 2-127 39-167 (277)
141 PRK13633 cobalt transporter AT 99.9 1.1E-24 2.5E-29 160.2 11.6 117 2-127 42-171 (280)
142 TIGR02769 nickel_nikE nickel i 99.9 1.7E-24 3.7E-29 158.1 12.5 118 2-127 43-177 (265)
143 PRK13638 cbiO cobalt transport 99.9 1.3E-24 2.8E-29 159.1 11.8 117 2-127 33-163 (271)
144 TIGR01189 ccmA heme ABC export 99.9 1.2E-24 2.5E-29 152.7 11.1 113 2-127 32-154 (198)
145 PRK10575 iron-hydroxamate tran 99.9 9.1E-25 2E-29 159.5 10.8 120 2-127 43-174 (265)
146 PRK10982 galactose/methyl gala 99.9 1.2E-24 2.7E-29 170.6 12.2 120 2-127 30-161 (491)
147 TIGR01257 rim_protein retinal- 99.9 1E-24 2.2E-29 190.2 12.7 117 2-127 962-1088(2272)
148 PRK14267 phosphate ABC transpo 99.9 1.9E-24 4.1E-29 156.6 12.1 119 2-127 36-176 (253)
149 TIGR02770 nickel_nikD nickel i 99.9 1.9E-24 4.1E-29 154.8 12.0 117 2-127 18-152 (230)
150 PRK14268 phosphate ABC transpo 99.9 2.1E-24 4.5E-29 157.1 12.2 116 2-127 44-181 (258)
151 PRK13639 cbiO cobalt transport 99.9 2.2E-24 4.7E-29 158.4 12.1 117 2-127 34-164 (275)
152 PRK14241 phosphate transporter 99.9 2.4E-24 5.2E-29 156.7 12.2 118 2-127 36-175 (258)
153 cd03231 ABC_CcmA_heme_exporter 99.9 1.4E-24 3.1E-29 152.7 10.6 111 2-127 32-152 (201)
154 PRK13645 cbiO cobalt transport 99.9 2E-24 4.3E-29 159.5 11.9 116 2-127 43-177 (289)
155 PRK10253 iron-enterobactin tra 99.9 1.4E-24 3E-29 158.6 10.7 120 2-127 39-170 (265)
156 PRK13539 cytochrome c biogenes 99.9 9.8E-25 2.1E-29 154.2 9.6 113 2-127 34-154 (207)
157 TIGR01257 rim_protein retinal- 99.9 1.2E-24 2.5E-29 189.9 12.0 117 2-127 1971-2097(2272)
158 PRK13540 cytochrome c biogenes 99.9 1.8E-24 3.9E-29 152.1 10.7 112 2-127 33-154 (200)
159 COG4619 ABC-type uncharacteriz 99.9 5.7E-26 1.2E-30 154.7 2.9 112 2-125 35-156 (223)
160 PRK09700 D-allose transporter 99.9 2.1E-24 4.5E-29 170.0 12.2 120 2-127 37-172 (510)
161 PRK11231 fecE iron-dicitrate t 99.9 1.9E-24 4.1E-29 157.0 11.0 120 2-127 34-165 (255)
162 PRK15112 antimicrobial peptide 99.9 2.7E-24 5.9E-29 157.2 11.8 118 2-127 45-176 (267)
163 PRK11174 cysteine/glutathione 99.9 1.7E-24 3.8E-29 172.7 11.5 117 2-127 382-512 (588)
164 TIGR02868 CydC thiol reductant 99.9 1.4E-24 3.1E-29 171.4 10.8 118 2-127 367-497 (529)
165 PRK10261 glutathione transport 99.9 3.1E-24 6.7E-29 172.5 12.7 118 2-127 356-490 (623)
166 TIGR03410 urea_trans_UrtE urea 99.9 1.6E-24 3.6E-29 154.9 10.0 114 2-127 32-158 (230)
167 PRK10744 pstB phosphate transp 99.9 3.7E-24 8.1E-29 155.9 11.8 117 2-127 45-183 (260)
168 PRK14273 phosphate ABC transpo 99.9 4.3E-24 9.3E-29 155.0 12.0 117 2-127 39-177 (254)
169 TIGR03740 galliderm_ABC gallid 99.9 3.2E-24 6.8E-29 152.9 11.0 112 2-127 32-151 (223)
170 PRK15439 autoinducer 2 ABC tra 99.9 2.8E-24 6.1E-29 169.3 11.7 113 2-127 43-167 (510)
171 TIGR02324 CP_lyasePhnL phospho 99.9 5.3E-24 1.2E-28 151.8 12.1 117 2-127 40-176 (224)
172 PRK14242 phosphate transporter 99.9 5E-24 1.1E-28 154.4 12.1 117 2-127 38-176 (253)
173 PRK14269 phosphate ABC transpo 99.9 4.6E-24 9.9E-29 154.2 11.8 118 2-127 34-169 (246)
174 COG2274 SunT ABC-type bacterio 99.9 1.8E-24 3.9E-29 175.1 10.6 117 3-127 506-636 (709)
175 TIGR03873 F420-0_ABC_ATP propo 99.9 3.6E-24 7.7E-29 155.6 11.2 120 2-127 33-164 (256)
176 PRK11614 livF leucine/isoleuci 99.9 2.6E-24 5.7E-29 154.6 10.3 115 2-127 37-164 (237)
177 PRK14235 phosphate transporter 99.9 6.2E-24 1.3E-28 155.3 12.2 118 2-127 51-190 (267)
178 PRK09984 phosphonate/organopho 99.9 3.9E-24 8.5E-29 155.8 10.9 120 2-127 36-179 (262)
179 PRK10247 putative ABC transpor 99.9 4.3E-24 9.3E-29 152.6 10.7 114 2-127 39-164 (225)
180 TIGR01978 sufC FeS assembly AT 99.9 8.8E-24 1.9E-28 152.1 12.4 120 2-127 32-171 (243)
181 PRK11022 dppD dipeptide transp 99.9 7.4E-24 1.6E-28 159.0 12.3 118 2-127 39-180 (326)
182 PRK14250 phosphate ABC transpo 99.9 4E-24 8.7E-29 154.2 10.3 112 2-127 35-158 (241)
183 PRK14256 phosphate ABC transpo 99.9 1.3E-23 2.7E-28 152.3 12.8 118 2-127 36-175 (252)
184 PRK09473 oppD oligopeptide tra 99.9 8.1E-24 1.8E-28 159.0 12.1 118 2-127 48-188 (330)
185 TIGR00956 3a01205 Pleiotropic 99.9 7.3E-24 1.6E-28 181.8 12.8 119 2-127 795-929 (1394)
186 PRK09700 D-allose transporter 99.9 6.8E-24 1.5E-28 167.1 11.6 120 2-127 295-436 (510)
187 TIGR03771 anch_rpt_ABC anchore 99.9 8.7E-24 1.9E-28 150.9 11.1 118 2-127 12-140 (223)
188 TIGR02633 xylG D-xylose ABC tr 99.9 1.3E-23 2.8E-28 165.1 12.7 120 2-127 33-168 (500)
189 PRK13541 cytochrome c biogenes 99.9 8.1E-24 1.8E-28 148.2 10.3 111 2-127 32-150 (195)
190 PRK14259 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 153.9 11.4 115 2-127 45-181 (269)
191 TIGR03269 met_CoM_red_A2 methy 99.9 1.1E-23 2.3E-28 166.3 11.7 117 2-127 32-195 (520)
192 cd03252 ABCC_Hemolysin The ABC 99.9 4.2E-24 9.1E-29 153.4 8.5 114 2-127 34-165 (237)
193 PRK10261 glutathione transport 99.9 1.2E-23 2.5E-28 169.2 11.9 118 2-127 48-195 (623)
194 PRK14270 phosphate ABC transpo 99.9 2E-23 4.3E-28 151.2 12.0 117 2-127 36-174 (251)
195 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 7E-24 1.5E-28 172.4 10.7 118 2-127 511-642 (710)
196 PRK14254 phosphate ABC transpo 99.9 1.9E-23 4.1E-28 154.2 11.9 115 2-127 71-207 (285)
197 cd03251 ABCC_MsbA MsbA is an e 99.9 5.9E-24 1.3E-28 152.3 8.8 114 2-127 34-165 (234)
198 cd03248 ABCC_TAP TAP, the Tran 99.9 3E-24 6.6E-29 153.2 7.2 119 2-127 46-177 (226)
199 PRK14274 phosphate ABC transpo 99.9 2.2E-23 4.8E-28 151.7 11.8 117 2-127 44-182 (259)
200 PLN03140 ABC transporter G fam 99.9 1.8E-23 3.8E-28 179.7 12.5 120 2-127 912-1046(1470)
201 PRK10419 nikE nickel transport 99.9 3.3E-23 7.1E-28 151.7 12.2 118 2-127 44-178 (268)
202 PRK03695 vitamin B12-transport 99.9 2.3E-23 4.9E-28 150.9 11.1 115 2-127 28-160 (248)
203 PRK10790 putative multidrug tr 99.9 1.9E-23 4.1E-28 166.9 11.7 117 2-127 373-503 (592)
204 COG1129 MglA ABC-type sugar tr 99.9 2.1E-23 4.6E-28 162.1 11.5 119 3-127 41-172 (500)
205 PRK14244 phosphate ABC transpo 99.9 2.9E-23 6.4E-28 150.3 11.5 118 2-127 37-176 (251)
206 PRK15093 antimicrobial peptide 99.9 3.3E-23 7.1E-28 155.7 12.1 120 2-127 39-185 (330)
207 PRK14240 phosphate transporter 99.9 4.2E-23 9E-28 149.4 12.3 117 2-127 35-173 (250)
208 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1E-23 2.2E-28 171.0 9.9 117 2-127 485-615 (686)
209 PRK14251 phosphate ABC transpo 99.9 3.7E-23 8.1E-28 149.7 11.9 117 2-127 36-174 (251)
210 PRK14260 phosphate ABC transpo 99.9 3.8E-23 8.3E-28 150.5 11.9 117 2-127 39-177 (259)
211 TIGR03269 met_CoM_red_A2 methy 99.9 2.5E-23 5.5E-28 164.2 11.6 116 2-127 316-454 (520)
212 PRK10762 D-ribose transporter 99.9 3.2E-23 6.9E-28 163.0 12.1 120 2-127 284-422 (501)
213 COG4161 ArtP ABC-type arginine 99.9 5.6E-24 1.2E-28 144.5 6.7 117 2-127 34-168 (242)
214 PRK14275 phosphate ABC transpo 99.9 3.8E-23 8.2E-28 152.6 11.7 117 2-127 71-209 (286)
215 PRK14237 phosphate transporter 99.9 5.3E-23 1.2E-27 150.4 12.3 117 2-127 52-190 (267)
216 PRK14239 phosphate transporter 99.9 4.9E-23 1.1E-27 149.1 12.0 117 2-127 37-175 (252)
217 PRK14262 phosphate ABC transpo 99.9 5.3E-23 1.1E-27 148.9 12.1 117 2-127 35-173 (250)
218 cd03254 ABCC_Glucan_exporter_l 99.9 9.6E-24 2.1E-28 150.8 8.1 114 2-127 35-166 (229)
219 PRK15134 microcin C ABC transp 99.9 3.7E-23 8.1E-28 163.5 12.1 118 2-127 318-452 (529)
220 COG1132 MdlB ABC-type multidru 99.9 1.7E-23 3.6E-28 166.6 10.1 118 2-127 361-492 (567)
221 PF00005 ABC_tran: ABC transpo 99.9 8.6E-24 1.9E-28 139.9 7.0 104 2-127 17-135 (137)
222 PRK14272 phosphate ABC transpo 99.9 7.8E-23 1.7E-27 148.0 12.6 118 2-127 36-175 (252)
223 TIGR01193 bacteriocin_ABC ABC- 99.9 1.9E-23 4.2E-28 169.9 10.5 119 2-127 506-638 (708)
224 PRK10418 nikD nickel transport 99.9 6.8E-23 1.5E-27 148.8 12.2 115 2-127 35-167 (254)
225 PRK11701 phnK phosphonate C-P 99.9 5.9E-23 1.3E-27 149.3 11.9 118 2-127 38-178 (258)
226 PRK14248 phosphate ABC transpo 99.9 5.1E-23 1.1E-27 150.5 11.6 117 2-127 53-191 (268)
227 PRK14249 phosphate ABC transpo 99.9 8.3E-23 1.8E-27 148.0 12.2 117 2-127 36-174 (251)
228 TIGR02633 xylG D-xylose ABC tr 99.9 4.4E-23 9.5E-28 162.1 11.6 120 2-127 292-430 (500)
229 TIGR00958 3a01208 Conjugate Tr 99.9 3.6E-23 7.7E-28 168.5 11.4 118 2-127 513-644 (711)
230 PRK14271 phosphate ABC transpo 99.9 8.1E-23 1.7E-27 150.2 12.2 117 2-127 53-190 (276)
231 PRK13547 hmuV hemin importer A 99.9 4.4E-23 9.5E-28 151.4 10.7 120 2-127 33-181 (272)
232 PRK13549 xylose transporter AT 99.9 5.7E-23 1.2E-27 161.7 12.1 120 2-127 294-432 (506)
233 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.7E-23 3.7E-28 150.3 8.2 114 2-127 35-166 (238)
234 PRK11288 araG L-arabinose tran 99.9 4.2E-23 9.2E-28 162.3 11.0 120 2-127 285-423 (501)
235 PRK11176 lipid transporter ATP 99.9 3.2E-23 6.9E-28 165.2 10.3 119 2-127 375-507 (582)
236 PRK14245 phosphate ABC transpo 99.9 9.9E-23 2.2E-27 147.5 12.0 118 2-127 35-173 (250)
237 COG1123 ATPase components of v 99.9 3.7E-23 8E-28 161.8 10.3 117 3-127 324-456 (539)
238 PRK14246 phosphate ABC transpo 99.9 1.1E-22 2.3E-27 148.2 12.1 118 2-127 42-180 (257)
239 PRK14238 phosphate transporter 99.9 7.9E-23 1.7E-27 149.8 11.3 117 2-127 56-194 (271)
240 PRK14261 phosphate ABC transpo 99.9 1.2E-22 2.5E-27 147.4 12.0 117 2-127 38-176 (253)
241 TIGR02857 CydD thiol reductant 99.9 2.4E-23 5.2E-28 164.4 9.0 118 2-127 354-485 (529)
242 PRK14263 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 148.2 11.9 115 2-127 40-176 (261)
243 cd03245 ABCC_bacteriocin_expor 99.9 2.4E-23 5.1E-28 148.0 7.9 110 2-127 36-167 (220)
244 PRK15439 autoinducer 2 ABC tra 99.9 8.5E-23 1.8E-27 161.0 11.8 120 2-127 295-430 (510)
245 PRK14253 phosphate ABC transpo 99.9 1.3E-22 2.8E-27 146.7 11.8 117 2-127 35-172 (249)
246 PRK14236 phosphate transporter 99.9 1.8E-22 3.9E-27 148.0 12.5 117 2-127 57-195 (272)
247 cd03253 ABCC_ATM1_transporter 99.9 3.9E-23 8.6E-28 148.2 8.8 114 2-127 33-164 (236)
248 PRK15134 microcin C ABC transp 99.9 9.7E-23 2.1E-27 161.2 11.8 118 2-127 41-183 (529)
249 TIGR03375 type_I_sec_LssB type 99.9 6.2E-23 1.3E-27 166.6 10.9 118 2-127 497-628 (694)
250 COG4674 Uncharacterized ABC-ty 99.9 5.7E-24 1.2E-28 147.8 4.0 119 3-127 38-174 (249)
251 PRK15056 manganese/iron transp 99.9 6.6E-23 1.4E-27 150.3 9.8 120 2-127 39-169 (272)
252 KOG0058|consensus 99.9 5.1E-23 1.1E-27 163.9 9.7 116 2-125 500-627 (716)
253 COG4136 ABC-type uncharacteriz 99.9 1.5E-23 3.3E-28 140.8 5.5 116 2-127 34-161 (213)
254 PRK14266 phosphate ABC transpo 99.9 1.6E-22 3.6E-27 146.3 11.3 117 2-127 35-173 (250)
255 PRK14258 phosphate ABC transpo 99.9 2.9E-22 6.3E-27 146.0 12.6 116 2-127 39-177 (261)
256 PRK14243 phosphate transporter 99.9 1.4E-22 3E-27 148.0 10.9 115 2-127 42-178 (264)
257 PRK10535 macrolide transporter 99.9 2.1E-22 4.6E-27 162.6 12.8 117 2-127 40-171 (648)
258 PRK14255 phosphate ABC transpo 99.9 3.2E-22 7E-27 144.9 12.4 117 2-127 37-175 (252)
259 PRK13657 cyclic beta-1,2-gluca 99.9 6.4E-23 1.4E-27 163.8 9.4 118 2-127 367-498 (588)
260 TIGR01842 type_I_sec_PrtD type 99.9 8.4E-23 1.8E-27 161.9 9.7 118 2-127 350-481 (544)
261 PRK11160 cysteine/glutathione 99.9 4.5E-23 9.6E-28 164.5 8.1 110 2-127 372-502 (574)
262 TIGR00956 3a01205 Pleiotropic 99.9 1.4E-22 3E-27 173.9 11.4 120 2-127 93-236 (1394)
263 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.5E-22 3.2E-27 146.7 9.8 104 2-127 31-142 (246)
264 TIGR02323 CP_lyasePhnK phospho 99.9 2.9E-22 6.2E-27 145.2 11.3 118 2-127 35-175 (253)
265 TIGR02203 MsbA_lipidA lipid A 99.9 1.8E-22 3.9E-27 160.5 10.9 119 2-127 364-496 (571)
266 COG4988 CydD ABC-type transpor 99.9 6E-23 1.3E-27 160.5 7.7 109 3-127 354-483 (559)
267 TIGR01846 type_I_sec_HlyB type 99.9 7.7E-23 1.7E-27 166.1 8.6 118 2-127 489-620 (694)
268 KOG0055|consensus 99.9 9E-23 2E-27 169.9 9.0 118 2-127 385-516 (1228)
269 PRK14264 phosphate ABC transpo 99.9 4.7E-22 1E-26 148.0 12.1 119 2-127 77-227 (305)
270 COG4604 CeuD ABC-type enteroch 99.9 1.3E-23 2.9E-28 146.2 3.3 118 3-127 34-162 (252)
271 COG0444 DppD ABC-type dipeptid 99.9 1.9E-22 4.1E-27 148.8 9.4 117 3-127 38-180 (316)
272 cd03244 ABCC_MRP_domain2 Domai 99.9 1.3E-22 2.9E-27 144.2 8.3 109 2-127 36-166 (221)
273 PRK14257 phosphate ABC transpo 99.9 6.4E-22 1.4E-26 148.7 12.3 116 2-127 114-252 (329)
274 TIGR02204 MsbA_rel ABC transpo 99.9 1.4E-22 3E-27 161.3 9.2 118 2-127 372-503 (576)
275 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5.3E-22 1.2E-26 141.8 11.1 108 2-127 54-169 (224)
276 KOG0059|consensus 99.9 5.8E-23 1.3E-27 170.3 7.1 118 1-127 596-725 (885)
277 PRK14265 phosphate ABC transpo 99.9 5.6E-22 1.2E-26 145.6 11.5 115 2-127 52-188 (274)
278 cd03233 ABC_PDR_domain1 The pl 99.9 4.6E-22 9.9E-27 140.2 10.6 94 2-127 39-145 (202)
279 PTZ00265 multidrug resistance 99.9 2E-22 4.4E-27 173.4 10.5 118 2-127 1200-1385(1466)
280 KOG0057|consensus 99.9 1.7E-22 3.8E-27 156.9 7.8 116 3-127 385-514 (591)
281 PLN03140 ABC transporter G fam 99.9 3E-22 6.6E-27 172.1 9.7 120 2-127 197-363 (1470)
282 PRK14252 phosphate ABC transpo 99.9 1E-21 2.2E-26 143.4 11.2 116 2-127 48-188 (265)
283 PRK10789 putative multidrug tr 99.9 3.2E-22 7E-27 159.4 9.2 118 2-127 347-478 (569)
284 COG1101 PhnK ABC-type uncharac 99.9 2.6E-22 5.7E-27 141.3 7.6 117 3-125 39-171 (263)
285 PRK13546 teichoic acids export 99.9 2E-21 4.3E-26 142.1 12.2 107 2-127 56-170 (264)
286 cd03290 ABCC_SUR1_N The SUR do 99.9 8.9E-22 1.9E-26 139.9 10.0 109 2-127 33-167 (218)
287 COG4133 CcmA ABC-type transpor 99.9 2.2E-22 4.7E-27 138.9 6.5 114 2-127 34-157 (209)
288 TIGR01192 chvA glucan exporter 99.9 5.7E-22 1.2E-26 158.5 9.8 118 2-127 367-498 (585)
289 cd03213 ABCG_EPDR ABCG transpo 99.9 1.3E-21 2.8E-26 137.1 10.3 90 2-127 41-138 (194)
290 CHL00131 ycf16 sulfate ABC tra 99.9 3.1E-21 6.7E-26 139.7 12.5 121 2-127 39-178 (252)
291 cd03289 ABCC_CFTR2 The CFTR su 99.9 5.4E-22 1.2E-26 145.9 7.9 108 2-127 36-165 (275)
292 KOG0055|consensus 99.9 7.3E-22 1.6E-26 164.6 9.4 116 2-125 1022-1149(1228)
293 COG4618 ArpD ABC-type protease 99.9 9.5E-22 2.1E-26 151.9 9.3 117 3-127 369-499 (580)
294 cd03288 ABCC_SUR2 The SUR doma 99.9 7.1E-22 1.5E-26 143.7 8.0 113 2-127 53-183 (257)
295 KOG0065|consensus 99.9 5.3E-22 1.2E-26 165.8 8.2 121 2-127 823-957 (1391)
296 PRK10938 putative molybdenum t 99.9 9E-22 2E-26 154.3 8.5 109 2-127 35-162 (490)
297 COG1123 ATPase components of v 99.9 2.8E-21 6E-26 151.3 11.1 117 3-127 42-181 (539)
298 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.2E-21 4.8E-26 136.9 9.5 103 2-127 40-152 (207)
299 COG4559 ABC-type hemin transpo 99.9 6.7E-22 1.5E-26 138.9 6.8 118 3-127 34-168 (259)
300 PRK09544 znuC high-affinity zi 99.9 1.8E-21 3.8E-26 141.4 9.2 102 2-127 36-147 (251)
301 PRK11819 putative ABC transpor 99.9 3.1E-21 6.7E-26 153.5 11.0 111 2-127 39-190 (556)
302 cd03250 ABCC_MRP_domain1 Domai 99.9 2.1E-21 4.6E-26 136.7 8.8 107 2-127 37-154 (204)
303 cd03230 ABC_DR_subfamily_A Thi 99.9 4.2E-21 9E-26 132.2 10.0 83 2-127 32-122 (173)
304 PRK10982 galactose/methyl gala 99.9 3.8E-21 8.2E-26 150.9 11.0 120 2-127 280-418 (491)
305 PLN03232 ABC transporter C fam 99.9 1.8E-21 3.8E-26 168.2 10.0 116 3-127 1269-1398(1495)
306 PRK09580 sufC cysteine desulfu 99.9 5.9E-21 1.3E-25 137.8 11.1 120 2-127 33-172 (248)
307 PRK15064 ABC transporter ATP-b 99.9 4E-21 8.7E-26 152.0 10.6 112 2-127 33-182 (530)
308 cd03215 ABC_Carb_Monos_II This 99.9 5.6E-21 1.2E-25 132.6 10.0 87 2-127 32-131 (182)
309 cd03232 ABC_PDR_domain2 The pl 99.9 5.8E-21 1.3E-25 133.6 9.7 89 2-127 39-135 (192)
310 PLN03130 ABC transporter C fam 99.8 4.4E-21 9.4E-26 166.5 10.8 116 3-127 1272-1401(1622)
311 cd03229 ABC_Class3 This class 99.8 5.2E-21 1.1E-25 132.3 8.9 85 2-127 32-127 (178)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 9.9E-21 2.2E-25 150.5 11.5 111 2-127 37-188 (552)
313 PRK10522 multidrug transporter 99.8 3.2E-21 7E-26 153.0 8.4 106 2-127 355-476 (547)
314 PRK10938 putative molybdenum t 99.8 4.9E-21 1.1E-25 150.2 9.1 119 2-127 292-428 (490)
315 COG4167 SapF ABC-type antimicr 99.8 1.1E-20 2.5E-25 130.6 9.2 115 3-125 46-172 (267)
316 PRK13545 tagH teichoic acids e 99.8 1.9E-20 4.1E-25 147.0 11.5 107 2-127 56-170 (549)
317 PRK13409 putative ATPase RIL; 99.8 1.2E-20 2.7E-25 150.9 10.2 102 2-127 371-480 (590)
318 PRK15177 Vi polysaccharide exp 99.8 1.2E-20 2.6E-25 134.1 8.9 104 2-127 19-131 (213)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.8E-20 3.8E-25 149.0 10.8 107 2-127 354-470 (552)
320 PRK11819 putative ABC transpor 99.8 1.7E-20 3.7E-25 149.3 10.6 107 2-127 356-472 (556)
321 PRK15064 ABC transporter ATP-b 99.8 1.2E-20 2.6E-25 149.3 9.5 104 2-127 351-465 (530)
322 TIGR00957 MRP_assoc_pro multi 99.8 1.2E-20 2.6E-25 163.2 10.3 116 3-127 1319-1448(1522)
323 cd03246 ABCC_Protease_Secretio 99.8 1.5E-20 3.2E-25 129.5 8.7 81 2-127 34-123 (173)
324 TIGR01194 cyc_pep_trnsptr cycl 99.8 8.5E-21 1.8E-25 151.0 8.4 107 2-127 374-497 (555)
325 PTZ00243 ABC transporter; Prov 99.8 2.1E-20 4.5E-25 161.9 10.8 108 3-127 1343-1473(1560)
326 cd03247 ABCC_cytochrome_bd The 99.8 1.9E-20 4E-25 129.5 8.4 84 2-127 34-125 (178)
327 COG4172 ABC-type uncharacteriz 99.8 2.5E-20 5.4E-25 141.3 9.7 117 3-127 320-453 (534)
328 cd03236 ABC_RNaseL_inhibitor_d 99.8 4.5E-20 9.8E-25 134.4 9.4 111 2-127 32-166 (255)
329 PTZ00265 multidrug resistance 99.8 1.5E-20 3.2E-25 162.0 7.4 64 2-68 417-484 (1466)
330 TIGR00954 3a01203 Peroxysomal 99.8 2.6E-20 5.6E-25 150.8 7.8 109 2-127 484-609 (659)
331 cd03228 ABCC_MRP_Like The MRP 99.8 6.6E-20 1.4E-24 126.0 8.7 81 2-127 34-123 (171)
332 COG1119 ModF ABC-type molybden 99.8 1.1E-20 2.4E-25 135.0 4.9 120 2-127 63-198 (257)
333 COG4586 ABC-type uncharacteriz 99.8 1.8E-20 4E-25 135.8 5.7 116 3-127 57-183 (325)
334 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.2E-19 2.6E-24 133.8 9.8 106 2-127 69-186 (282)
335 PRK11147 ABC transporter ATPas 99.8 7.8E-20 1.7E-24 147.4 9.5 107 2-127 351-467 (635)
336 cd03223 ABCD_peroxisomal_ALDP 99.8 1.5E-19 3.2E-24 123.9 9.1 80 2-127 33-118 (166)
337 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.7E-19 5.9E-24 125.8 9.8 88 2-127 32-131 (200)
338 TIGR01271 CFTR_protein cystic 99.8 2.2E-19 4.8E-24 155.2 11.1 107 3-127 1252-1380(1490)
339 cd03214 ABC_Iron-Siderophores_ 99.8 7.8E-20 1.7E-24 126.6 6.0 83 2-127 31-124 (180)
340 COG0396 sufC Cysteine desulfur 99.8 4.6E-19 1E-23 125.7 9.9 119 3-127 37-171 (251)
341 PRK13409 putative ATPase RIL; 99.8 1.6E-19 3.4E-24 144.6 7.6 108 2-127 105-239 (590)
342 COG4172 ABC-type uncharacteriz 99.8 5.9E-19 1.3E-23 133.9 9.1 118 2-127 42-184 (534)
343 COG1134 TagH ABC-type polysacc 99.8 6.2E-19 1.3E-23 126.0 8.5 104 3-125 60-170 (249)
344 COG4608 AppF ABC-type oligopep 99.8 5.8E-19 1.3E-23 127.9 6.5 82 3-127 46-136 (268)
345 TIGR01271 CFTR_protein cystic 99.8 3.2E-18 6.9E-23 148.2 11.4 105 2-127 458-575 (1490)
346 KOG0056|consensus 99.8 1.5E-19 3.2E-24 140.0 2.8 114 2-125 570-697 (790)
347 TIGR00957 MRP_assoc_pro multi 99.8 2.3E-18 4.9E-23 149.3 10.0 105 2-127 670-787 (1522)
348 COG4987 CydC ABC-type transpor 99.8 9E-19 1.9E-23 136.2 6.7 109 3-127 371-501 (573)
349 PRK10636 putative ABC transpor 99.8 4E-18 8.6E-23 137.7 10.1 103 2-127 344-457 (638)
350 PLN03073 ABC transporter F fam 99.8 6.3E-18 1.4E-22 137.8 10.6 105 2-127 541-654 (718)
351 PRK10636 putative ABC transpor 99.7 7.7E-18 1.7E-22 136.0 9.7 111 2-127 33-176 (638)
352 PLN03130 ABC transporter C fam 99.7 5.3E-18 1.1E-22 147.5 8.9 107 2-127 649-767 (1622)
353 PLN03232 ABC transporter C fam 99.7 5.7E-18 1.2E-22 146.7 8.9 108 2-127 649-767 (1495)
354 COG4778 PhnL ABC-type phosphon 99.7 1.8E-18 4E-23 118.4 4.1 118 1-127 42-179 (235)
355 PTZ00243 ABC transporter; Prov 99.7 1.9E-17 4.1E-22 143.7 9.2 107 2-127 692-809 (1560)
356 cd03216 ABC_Carb_Monos_I This 99.7 3.7E-17 8E-22 111.7 8.5 68 2-127 32-109 (163)
357 COG5265 ATM1 ABC-type transpor 99.7 5.7E-18 1.2E-22 128.8 4.7 115 3-125 296-422 (497)
358 PRK11147 ABC transporter ATPas 99.7 7.4E-17 1.6E-21 130.2 10.6 110 2-127 35-183 (635)
359 COG0488 Uup ATPase components 99.7 6.2E-17 1.3E-21 127.9 9.4 110 3-127 36-180 (530)
360 COG4107 PhnK ABC-type phosphon 99.7 2.9E-17 6.2E-22 113.1 6.4 113 3-127 39-178 (258)
361 cd03222 ABC_RNaseL_inhibitor T 99.7 3.8E-16 8.2E-21 108.2 7.8 62 2-127 31-98 (177)
362 KOG0054|consensus 99.7 3.4E-16 7.4E-21 133.1 9.1 102 3-125 554-666 (1381)
363 COG1129 MglA ABC-type sugar tr 99.6 1.4E-15 3E-20 118.7 9.9 119 3-127 292-428 (500)
364 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.4E-15 3.1E-20 102.0 7.6 39 2-50 32-70 (144)
365 cd03278 ABC_SMC_barmotin Barmo 99.6 4.8E-16 1E-20 109.3 4.2 96 2-127 28-144 (197)
366 cd03238 ABC_UvrA The excision 99.6 3.1E-15 6.8E-20 103.6 7.4 79 2-127 27-116 (176)
367 cd00267 ABC_ATPase ABC (ATP-bi 99.6 7.3E-15 1.6E-19 99.5 8.3 47 2-50 31-80 (157)
368 KOG0054|consensus 99.6 1.3E-15 2.8E-20 129.6 5.3 114 3-125 1173-1298(1381)
369 cd03273 ABC_SMC2_euk Eukaryoti 99.6 3E-16 6.5E-21 113.8 1.1 118 3-127 32-197 (251)
370 KOG0065|consensus 99.6 1.9E-15 4.2E-20 127.1 5.2 117 3-125 148-283 (1391)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.6 4.4E-15 9.5E-20 106.9 5.2 115 3-127 30-189 (243)
372 COG4178 ABC-type uncharacteriz 99.5 5.5E-15 1.2E-19 117.5 4.9 103 1-125 424-538 (604)
373 COG0488 Uup ATPase components 99.5 5.9E-14 1.3E-18 111.2 9.3 102 3-127 355-466 (530)
374 PLN03073 ABC transporter F fam 99.5 5E-15 1.1E-19 121.0 2.9 116 2-127 209-371 (718)
375 COG4138 BtuD ABC-type cobalami 99.5 6.1E-15 1.3E-19 101.7 1.8 101 2-117 31-136 (248)
376 COG3845 ABC-type uncharacteriz 99.5 3E-13 6.5E-18 104.7 9.0 117 3-125 291-426 (501)
377 COG4615 PvdE ABC-type sideroph 99.4 1.7E-14 3.7E-19 109.7 1.0 103 2-125 355-471 (546)
378 cd03240 ABC_Rad50 The catalyti 99.4 1.6E-13 3.4E-18 97.0 3.1 98 2-127 28-148 (204)
379 cd03271 ABC_UvrA_II The excisi 99.4 2.1E-12 4.5E-17 94.5 7.8 70 45-127 118-199 (261)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.4 8.6E-15 1.9E-19 104.1 -4.7 108 3-127 32-158 (212)
381 KOG0060|consensus 99.3 1.7E-12 3.7E-17 102.3 4.7 110 2-125 467-593 (659)
382 COG1245 Predicted ATPase, RNas 99.3 7.3E-12 1.6E-16 96.8 6.8 101 3-127 374-482 (591)
383 cd03279 ABC_sbcCD SbcCD and ot 99.2 2.6E-11 5.6E-16 86.1 6.3 97 2-117 34-134 (213)
384 cd03270 ABC_UvrA_I The excisio 99.2 1E-10 2.2E-15 83.9 9.1 37 91-127 119-166 (226)
385 KOG0927|consensus 99.2 2E-11 4.4E-16 95.7 4.8 103 3-127 423-536 (614)
386 KOG0066|consensus 99.1 1.2E-10 2.6E-15 90.2 5.8 102 2-127 619-731 (807)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.1 3.6E-10 7.7E-15 79.6 6.3 98 2-127 27-140 (198)
388 KOG0062|consensus 99.0 2.6E-10 5.7E-15 89.1 5.1 105 2-127 396-509 (582)
389 KOG0064|consensus 99.0 4E-10 8.7E-15 88.6 4.0 110 2-123 514-633 (728)
390 cd00820 PEPCK_HprK Phosphoenol 99.0 5.4E-10 1.2E-14 71.4 3.2 55 2-67 21-78 (107)
391 COG4170 SapD ABC-type antimicr 98.9 4.2E-10 9.2E-15 80.0 1.9 119 2-127 39-185 (330)
392 PRK00349 uvrA excinuclease ABC 98.8 3.5E-08 7.6E-13 83.0 9.3 57 58-127 792-860 (943)
393 PRK00635 excinuclease ABC subu 98.8 5E-08 1.1E-12 86.0 10.5 69 54-127 759-839 (1809)
394 cd03275 ABC_SMC1_euk Eukaryoti 98.8 8.7E-10 1.9E-14 79.9 -0.4 30 2-33 28-57 (247)
395 TIGR02858 spore_III_AA stage I 98.8 5.2E-09 1.1E-13 77.0 3.5 59 2-63 117-179 (270)
396 KOG0063|consensus 98.8 1.1E-08 2.4E-13 79.1 5.1 95 1-118 372-468 (592)
397 KOG0062|consensus 98.7 1.1E-08 2.4E-13 80.2 3.5 37 91-127 180-225 (582)
398 cd03283 ABC_MutS-like MutS-lik 98.6 6.7E-09 1.5E-13 73.2 0.3 89 2-114 31-125 (199)
399 COG1245 Predicted ATPase, RNas 98.6 2E-08 4.4E-13 78.1 2.3 37 91-127 196-240 (591)
400 KOG0927|consensus 98.6 2.7E-08 5.8E-13 78.5 2.9 37 91-127 203-248 (614)
401 cd01130 VirB11-like_ATPase Typ 98.6 2.3E-07 5E-12 64.5 7.2 68 2-71 31-100 (186)
402 COG2401 ABC-type ATPase fused 98.5 1.1E-07 2.3E-12 73.6 4.0 99 3-125 416-530 (593)
403 KOG2355|consensus 98.5 2.3E-07 5E-12 66.0 4.8 100 2-118 46-159 (291)
404 cd03280 ABC_MutS2 MutS2 homolo 98.3 3.3E-07 7.2E-12 64.4 1.6 16 2-18 34-49 (200)
405 cd03277 ABC_SMC5_euk Eukaryoti 98.2 3.1E-06 6.7E-11 60.3 5.6 18 2-20 29-46 (213)
406 TIGR00554 panK_bact pantothena 98.2 1.4E-06 2.9E-11 64.9 3.1 67 2-71 68-138 (290)
407 TIGR03238 dnd_assoc_3 dnd syst 98.2 1.1E-06 2.3E-11 69.2 2.6 32 2-37 38-70 (504)
408 PRK09825 idnK D-gluconate kina 98.1 1.4E-06 3.1E-11 60.2 2.4 61 2-68 9-71 (176)
409 PRK11545 gntK gluconate kinase 98.1 1.2E-06 2.6E-11 59.8 0.9 61 3-69 2-64 (163)
410 cd01854 YjeQ_engC YjeQ/EngC. 98.0 8.3E-06 1.8E-10 60.5 4.8 66 2-69 167-242 (287)
411 PRK09270 nucleoside triphospha 98.0 8.7E-06 1.9E-10 58.4 4.2 65 2-70 39-107 (229)
412 PRK01889 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 61.8 4.7 53 2-56 201-253 (356)
413 cd03285 ABC_MSH2_euk MutS2 hom 98.0 3E-06 6.6E-11 60.7 1.4 36 91-127 75-118 (222)
414 PRK07196 fliI flagellum-specif 97.9 1.3E-05 2.8E-10 62.6 4.8 66 3-70 162-239 (434)
415 cd03282 ABC_MSH4_euk MutS4 hom 97.9 3.5E-06 7.6E-11 59.7 0.6 18 2-20 35-52 (204)
416 cd03241 ABC_RecN RecN ATPase i 97.8 1.9E-05 4.2E-10 58.2 4.0 23 105-127 169-201 (276)
417 PRK00098 GTPase RsgA; Reviewed 97.8 4.4E-05 9.6E-10 56.9 5.7 65 2-68 170-244 (298)
418 PLN02318 phosphoribulokinase/u 97.8 1.6E-05 3.5E-10 64.2 3.3 58 2-66 71-128 (656)
419 PRK06002 fliI flagellum-specif 97.8 3.2E-05 7E-10 60.6 4.5 50 2-53 171-230 (450)
420 cd03242 ABC_RecF RecF is a rec 97.8 0.00027 5.8E-09 51.9 9.1 18 2-20 27-44 (270)
421 PRK10078 ribose 1,5-bisphospho 97.7 3.5E-05 7.7E-10 53.5 3.5 45 2-51 8-55 (186)
422 PRK10416 signal recognition pa 97.7 2.3E-05 5E-10 59.1 2.6 63 3-67 121-192 (318)
423 TIGR02788 VirB11 P-type DNA tr 97.7 0.00019 4E-09 53.8 7.1 66 2-70 150-217 (308)
424 TIGR02322 phosphon_PhnN phosph 97.7 0.00016 3.5E-09 49.6 6.2 59 2-63 7-84 (179)
425 cd02023 UMPK Uridine monophosp 97.7 2.3E-05 4.9E-10 54.8 1.9 28 2-33 5-32 (198)
426 cd03239 ABC_SMC_head The struc 97.7 7.2E-05 1.6E-09 51.8 4.4 18 2-20 28-45 (178)
427 cd02025 PanK Pantothenate kina 97.6 6.2E-05 1.4E-09 53.8 3.5 61 2-66 5-70 (220)
428 TIGR00235 udk uridine kinase. 97.5 2.6E-05 5.6E-10 55.0 0.6 61 2-64 12-75 (207)
429 PRK06995 flhF flagellar biosyn 97.5 6.5E-05 1.4E-09 59.5 2.8 51 2-71 262-312 (484)
430 cd02026 PRK Phosphoribulokinas 97.4 0.0001 2.3E-09 54.4 2.2 48 2-52 5-54 (273)
431 PRK03846 adenylylsulfate kinas 97.4 8.1E-05 1.8E-09 52.2 1.5 48 2-52 30-78 (198)
432 PRK07721 fliI flagellum-specif 97.3 0.00037 8.1E-09 54.7 4.7 48 2-51 164-222 (438)
433 TIGR00630 uvra excinuclease AB 97.3 0.00064 1.4E-08 57.8 6.3 37 91-127 810-858 (924)
434 PRK00349 uvrA excinuclease ABC 97.3 0.00066 1.4E-08 57.8 6.3 72 55-127 434-518 (943)
435 TIGR01360 aden_kin_iso1 adenyl 97.3 1.1E-05 2.4E-10 55.5 -3.8 28 2-31 9-39 (188)
436 KOG0066|consensus 97.3 0.00017 3.6E-09 56.8 2.2 119 1-127 295-439 (807)
437 TIGR00630 uvra excinuclease AB 97.3 0.00078 1.7E-08 57.3 6.3 68 55-127 432-516 (924)
438 PRK06315 type III secretion sy 97.2 0.00067 1.5E-08 53.3 5.4 91 2-99 170-277 (442)
439 PRK00300 gmk guanylate kinase; 97.2 0.00022 4.8E-09 49.9 2.5 30 2-35 11-52 (205)
440 cd01131 PilT Pilus retraction 97.2 0.00074 1.6E-08 47.4 5.1 33 2-36 7-40 (198)
441 PRK13851 type IV secretion sys 97.2 0.0016 3.4E-08 49.7 7.0 67 2-71 168-236 (344)
442 cd04104 p47_IIGP_like p47 (47- 97.2 0.00032 7E-09 49.0 2.8 30 2-33 7-36 (197)
443 PLN02796 D-glycerate 3-kinase 97.1 0.00035 7.5E-09 53.2 2.8 35 2-38 106-143 (347)
444 PRK08149 ATP synthase SpaL; Va 97.1 0.00075 1.6E-08 52.8 4.4 51 3-55 158-218 (428)
445 TIGR00606 rad50 rad50. This fa 97.1 0.00094 2E-08 58.7 5.3 48 2-51 34-87 (1311)
446 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.00098 2.1E-08 51.1 4.7 64 2-67 140-208 (358)
447 cd04155 Arl3 Arl3 subfamily. 97.1 0.00093 2E-08 45.0 4.1 33 3-36 21-60 (173)
448 TIGR02546 III_secr_ATP type II 97.0 0.0014 3.1E-08 51.3 5.2 57 2-60 151-216 (422)
449 TIGR00101 ureG urease accessor 97.0 0.0006 1.3E-08 48.1 2.5 49 2-53 7-58 (199)
450 PRK07960 fliI flagellum-specif 96.9 0.0013 2.7E-08 51.9 4.3 49 3-53 182-239 (455)
451 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.00042 9E-09 49.4 1.0 54 2-67 36-89 (216)
452 PF13555 AAA_29: P-loop contai 96.8 0.0008 1.7E-08 38.8 2.0 21 2-24 29-49 (62)
453 TIGR03819 heli_sec_ATPase heli 96.8 0.0054 1.2E-07 46.7 6.9 66 3-71 185-253 (340)
454 PF03193 DUF258: Protein of un 96.8 0.00097 2.1E-08 45.6 2.5 28 2-31 41-68 (161)
455 PLN03046 D-glycerate 3-kinase; 96.7 0.0012 2.5E-08 51.8 2.8 35 2-38 218-255 (460)
456 cd00879 Sar1 Sar1 subfamily. 96.7 0.0021 4.6E-08 44.1 3.9 32 3-35 26-64 (190)
457 KOG0063|consensus 96.7 0.0011 2.3E-08 52.1 2.5 34 91-124 196-235 (592)
458 PRK07429 phosphoribulokinase; 96.7 0.0011 2.3E-08 50.3 2.4 48 2-51 14-62 (327)
459 PF00350 Dynamin_N: Dynamin fa 96.7 0.0011 2.4E-08 44.6 2.3 21 3-24 5-25 (168)
460 cd01876 YihA_EngB The YihA (En 96.7 0.00091 2E-08 44.2 1.6 26 2-29 5-32 (170)
461 PRK04863 mukB cell division pr 96.7 0.0015 3.3E-08 58.0 3.3 32 2-35 33-64 (1486)
462 PRK09862 putative ATP-dependen 96.7 0.0014 3.1E-08 52.3 2.8 33 1-35 215-247 (506)
463 cd01881 Obg_like The Obg-like 96.6 0.0021 4.7E-08 43.1 3.3 18 2-20 2-19 (176)
464 PRK09518 bifunctional cytidyla 96.6 0.00081 1.8E-08 55.8 1.2 18 2-20 7-24 (712)
465 cd01896 DRG The developmentall 96.6 0.0025 5.5E-08 45.9 3.6 32 2-35 6-48 (233)
466 smart00382 AAA ATPases associa 96.6 0.0037 8.1E-08 39.6 4.1 32 2-35 8-40 (148)
467 PTZ00132 GTP-binding nuclear p 96.6 0.0025 5.4E-08 44.9 3.5 21 2-24 15-36 (215)
468 TIGR01420 pilT_fam pilus retra 96.6 0.0056 1.2E-07 46.6 5.5 33 2-36 128-161 (343)
469 PRK10463 hydrogenase nickel in 96.5 0.0022 4.7E-08 47.9 2.9 32 2-35 110-141 (290)
470 TIGR03498 FliI_clade3 flagella 96.5 0.0027 5.9E-08 49.7 3.3 31 3-35 147-177 (418)
471 PRK10751 molybdopterin-guanine 96.5 0.0016 3.4E-08 45.1 1.8 30 3-34 13-45 (173)
472 PF01926 MMR_HSR1: 50S ribosom 96.5 0.0017 3.6E-08 41.3 1.8 17 3-20 6-22 (116)
473 cd01136 ATPase_flagellum-secre 96.4 0.0028 6.2E-08 48.0 3.0 32 2-35 75-106 (326)
474 PRK09099 type III secretion sy 96.4 0.0032 7E-08 49.5 3.3 31 3-35 170-200 (441)
475 TIGR01313 therm_gnt_kin carboh 96.4 0.0022 4.8E-08 43.2 2.0 29 2-36 4-32 (163)
476 PF13207 AAA_17: AAA domain; P 96.3 0.0022 4.7E-08 40.9 1.7 18 2-20 5-22 (121)
477 PRK05480 uridine/cytidine kina 96.3 0.0022 4.8E-08 45.1 1.9 19 2-22 12-30 (209)
478 TIGR00368 Mg chelatase-related 96.3 0.0031 6.7E-08 50.4 2.8 32 2-35 217-248 (499)
479 PRK07594 type III secretion sy 96.3 0.0035 7.6E-08 49.2 2.7 31 3-35 162-192 (433)
480 TIGR03497 FliI_clade2 flagella 96.2 0.0045 9.8E-08 48.4 3.3 33 2-36 143-175 (413)
481 TIGR00017 cmk cytidylate kinas 96.2 0.0022 4.7E-08 45.9 1.3 27 2-30 8-37 (217)
482 cd01120 RecA-like_NTPases RecA 96.2 0.0027 5.9E-08 41.9 1.7 32 2-35 5-36 (165)
483 smart00053 DYNc Dynamin, GTPas 96.1 0.0046 1E-07 44.9 2.7 28 3-31 33-61 (240)
484 PRK00889 adenylylsulfate kinas 96.1 0.0014 3E-08 44.8 -0.0 31 2-34 10-41 (175)
485 TIGR01026 fliI_yscN ATPase Fli 96.1 0.0054 1.2E-07 48.3 3.2 32 2-35 169-200 (440)
486 PRK00635 excinuclease ABC subu 96.1 0.0064 1.4E-07 54.9 3.9 36 92-127 459-505 (1809)
487 cd00071 GMPK Guanosine monopho 96.1 0.0049 1.1E-07 40.8 2.5 21 2-24 5-25 (137)
488 PRK12288 GTPase RsgA; Reviewed 96.1 0.0036 7.7E-08 47.8 2.1 27 2-30 211-237 (347)
489 cd03243 ABC_MutS_homologs The 96.1 0.0029 6.3E-08 44.4 1.5 18 2-20 35-52 (202)
490 TIGR03263 guanyl_kin guanylate 96.1 0.0045 9.8E-08 42.3 2.4 18 2-20 7-24 (180)
491 PRK05541 adenylylsulfate kinas 96.1 0.0026 5.7E-08 43.5 1.1 32 2-35 13-45 (176)
492 PRK06793 fliI flagellum-specif 96.1 0.0065 1.4E-07 47.7 3.4 32 2-35 162-193 (432)
493 TIGR00157 ribosome small subun 96.0 0.0043 9.2E-08 45.1 2.1 51 3-55 127-182 (245)
494 PRK05922 type III secretion sy 96.0 0.007 1.5E-07 47.6 3.4 31 3-35 164-194 (434)
495 COG4962 CpaF Flp pilus assembl 96.0 0.0074 1.6E-07 46.0 3.4 28 3-32 180-207 (355)
496 cd04163 Era Era subfamily. Er 96.0 0.0047 1E-07 40.6 2.1 18 2-20 9-26 (168)
497 cd04159 Arl10_like Arl10-like 96.0 0.0044 9.6E-08 40.4 1.9 17 3-20 6-22 (159)
498 cd02019 NK Nucleoside/nucleoti 96.0 0.0052 1.1E-07 35.8 2.0 18 2-20 5-22 (69)
499 PF10662 PduV-EutP: Ethanolami 95.9 0.0053 1.2E-07 41.2 2.0 31 3-34 8-39 (143)
500 TIGR02030 BchI-ChlI magnesium 95.9 0.0041 8.9E-08 47.3 1.5 26 2-29 31-56 (337)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=206.30 Aligned_cols=117 Identities=26% Similarity=0.310 Sum_probs=104.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
|+||||| |||||||.++ ..|++|+|+++|.++. ...+|+.+|+|||+++|||++||.||+.++...- .+.++
T Consensus 35 GpSGSGK-STlLRclN~L-E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k 110 (240)
T COG1126 35 GPSGSGK-STLLRCLNGL-EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSK 110 (240)
T ss_pred CCCCCCH-HHHHHHHHCC-cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCH
Confidence 7999999 9999999999 8999999999998753 3568899999999999999999999999875422 15778
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++++.+. ++|+.+||.+..+. .+|||||||||| |+.+|++++ ||
T Consensus 111 ~eA~~~A~----~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 111 AEAREKAL----ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred HHHHHHHH----HHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 88999999 99999999988888 999999999996 578999987 76
No 2
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-35 Score=218.52 Aligned_cols=117 Identities=23% Similarity=0.201 Sum_probs=107.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
=|+||||| |||||+|+|+ ..|++|+|.|+|.+++. ...++.|+||||+..+||+|||+||+.|+.+.+ +.++++
T Consensus 35 lGPSGcGK-STlLr~IAGL-e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~e 109 (338)
T COG3839 35 LGPSGCGK-STLLRMIAGL-EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAE 109 (338)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHH
Confidence 38999999 9999999999 89999999999999865 445688999999999999999999999998876 567888
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+++++ ++++.+++.+.+++ .+|||||||||| |+.+|++++ ||
T Consensus 110 i~~rV~----eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 110 IDKRVK----EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred HHHHHH----HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 899999 99999999999998 999999999996 688999876 87
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=216.90 Aligned_cols=118 Identities=23% Similarity=0.207 Sum_probs=104.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
=|+||||| |||||+|+|+ ..|++|+|.++|+++.. ...++.||+|||+..+||+|||+||+.|+..++. ....++
T Consensus 37 LGPSGcGK-TTlLR~IAGf-e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~ 112 (352)
T COG3842 37 LGPSGCGK-TTLLRMIAGF-EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAE 112 (352)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHH
Confidence 38999999 9999999999 89999999999999854 4457889999999999999999999999987432 345567
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.++++. ++++.++|.++.++ ++|||||||||| |+.+|+||+ ||
T Consensus 113 i~~rv~----e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 113 IKARVE----EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred HHHHHH----HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 788999 99999999998888 999999999996 578999987 77
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-35 Score=208.05 Aligned_cols=117 Identities=26% Similarity=0.277 Sum_probs=106.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|+||||| ||+||+|.++ +.|++|+|+|+|+++. ...+|+.||||-|...+||++||.||+.+...+. ++++
T Consensus 33 iGpSGsGK-TTtLkMINrL-iept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k 107 (309)
T COG1125 33 IGPSGSGK-TTTLKMINRL-IEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDK 107 (309)
T ss_pred ECCCCCcH-HHHHHHHhcc-cCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCH
Confidence 38999999 9999999999 8999999999999964 3678999999999999999999999999987765 6788
Q ss_pred HHHHhhhccchHHHHHHhCCCc--cCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLP--RGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~--~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
++.+++++ ++|+.+||++ +.++ ++||||||||| |||.+|+||+ ||
T Consensus 108 ~~i~~r~~----ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 108 ERIKKRAD----ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred HHHHHHHH----HHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 88899999 9999999974 6777 99999999999 5899999988 77
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=205.30 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=102.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|+||||| |||||+|+|+ ..|++|+|.++|.++ ......++||||++.++|++||.+|+.++.... +.+..+..
T Consensus 36 GpSGcGK-STLLriiAGL-~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~ 108 (248)
T COG1116 36 GPSGCGK-STLLRLIAGL-EKPTSGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEAR 108 (248)
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheehhhcc---ccchHhHH
Confidence 7999999 9999999999 899999999999987 334568999999999999999999999998765 34566667
Q ss_pred hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++. ++++.+||.+..+. ++|||||||||+ ++.+|+||+ ||
T Consensus 109 ~~a~----~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 109 ERAK----ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred HHHH----HHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7888 99999999999888 999999999996 578999998 87
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-33 Score=201.99 Aligned_cols=114 Identities=24% Similarity=0.216 Sum_probs=104.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
|.||||| |||+||+.++ ..|++|+|.++|.++.. ..+|+.|||+||+++++...||++|++|...+. +.
T Consensus 39 G~SGAGK-STLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~ 113 (339)
T COG1135 39 GYSGAGK-STLLRLINLL-ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GV 113 (339)
T ss_pred cCCCCcH-HHHHHHHhcc-CCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CC
Confidence 6799999 9999999999 89999999999988532 567889999999999999999999999998876 57
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
++.+.++++. ++++.+||.++.+. .+|||||||||+ ||.+|+||+
T Consensus 114 ~k~ei~~RV~----elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL 164 (339)
T COG1135 114 PKAEIKQRVA----ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL 164 (339)
T ss_pred CHHHHHHHHH----HHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEE
Confidence 7889999999 99999999988888 999999999995 689999998
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=4.5e-32 Score=192.83 Aligned_cols=117 Identities=26% Similarity=0.281 Sum_probs=98.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhh-cceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQF-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|+||||| ||||++|.|+ ..|++|.|.|+|.++.. ..+ ++.||||||+++|.|.+||.||+.+...+.
T Consensus 37 ~GpSGSGK-STLLniig~l-d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~--- 111 (226)
T COG1136 37 VGPSGSGK-STLLNLLGGL-DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA--- 111 (226)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---
Confidence 38999999 9999999999 89999999999988642 233 467999999999999999999999877654
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCC-C--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGT-L--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+......++.+. .+++.+|+.+..+ . .+|||||||||| |+.+|++|+ ||
T Consensus 112 ~~~~~~~~~~~~----~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 112 GKSAGRRKRAAE----ELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred CCChhHHHHHHH----HHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 233335566777 9999999986665 4 999999999996 688999999 87
No 8
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.98 E-value=2.7e-32 Score=188.12 Aligned_cols=117 Identities=24% Similarity=0.203 Sum_probs=106.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|+||||| |||+|+|.+. ..|++|+|+++|+++.. .-+|++||+|||++.+.+..||+||++|..+.. +
T Consensus 34 ~GpSGAGK-STllkLi~~~-e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G 108 (223)
T COG2884 34 TGPSGAGK-STLLKLIYGE-ERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---G 108 (223)
T ss_pred ECCCCCCH-HHHHHHHHhh-hcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---C
Confidence 47999999 9999999999 89999999999999643 446899999999999999999999999998875 5
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+.++++. ++|+.+||.+..+. .+|||||||||+ ++.+|+||+ ||
T Consensus 109 ~~~~~i~~rV~----~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 109 KPPREIRRRVS----EVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred CCHHHHHHHHH----HHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 67788889999 99999999988777 999999999996 578999999 77
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=196.10 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=103.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCE---ecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGH---ERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~---~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|+||||| ||||++|+|+ ..|++|.|.++|+ +... ....++||||+|+..+|++|||.+|++|+...+. ...+
T Consensus 34 lGpSGaGK-sTlLRiIAGL-e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~ 110 (345)
T COG1118 34 LGPSGAGK-STLLRIIAGL-ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPS 110 (345)
T ss_pred ECCCCCcH-HHHHHHHhCc-CCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCC
Confidence 48999999 9999999999 8999999999999 5433 3334689999999999999999999999987652 2345
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++.++. ++|+.+.|....++ .+|||||||||| +|.+|+||+ ||
T Consensus 111 ~~~~r~rv~----elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 111 EAEIRARVE----ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred hhhHHHHHH----HHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 667788888 99999999988888 999999999996 578999988 87
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.9e-30 Score=191.09 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=101.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
|++|||| |||+|+|+|+ +.|++|+|.++|.+... ..+++.+||+||++.+|+.+|++||+.|.+.++. .....
T Consensus 38 G~NGAGK-TTllk~l~gl-~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~---~~~~~ 112 (293)
T COG1131 38 GPNGAGK-TTLLKILAGL-LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG---LSKEE 112 (293)
T ss_pred CCCCCCH-HHHHHHHhCC-cCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC---CChhH
Confidence 7899999 9999999999 89999999999998654 5678899999999999999999999999998873 33344
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..++++ ++++.++|.+..++ ++||+|||||++ |+++|+++| ||
T Consensus 113 ~~~~~~----~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 113 AEERIE----ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred HHHHHH----HHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 566788 99999999875555 999999999994 689999998 87
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=3.3e-30 Score=183.21 Aligned_cols=117 Identities=25% Similarity=0.245 Sum_probs=102.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
|.||||| |||+|+|.|+ .+|++|+|+++|+++.. ..+|+++|++||...+|..+||+||+.|..+-+. .+
T Consensus 41 GgSGsGK-StlLr~I~Gl-l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~l 116 (263)
T COG1127 41 GGSGSGK-STLLRLILGL-LRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KL 116 (263)
T ss_pred CCCCcCH-HHHHHHHhcc-CCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cC
Confidence 7899999 9999999999 89999999999998632 3568899999999999999999999999876442 56
Q ss_pred cHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++...++.+. .-|+.+||... .+. ++|||||++|++ |+.+|+||| ||
T Consensus 117 p~~~i~~lv~----~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEP 172 (263)
T COG1127 117 PESLIRELVL----MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172 (263)
T ss_pred CHHHHHHHHH----HHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCC
Confidence 7788888888 88999999876 666 999999999995 688999999 77
No 12
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=191.85 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=100.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.||||||++.+||++||+||+.|+...+ +.+..+
T Consensus 36 lG~sGsGK-STLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~ 110 (356)
T PRK11650 36 VGPSGCGK-STLLRMVAGL-ERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAE 110 (356)
T ss_pred ECCCCCcH-HHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 234578999999999999999999999986543 234555
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 111 ~~~~~~----~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 111 IEERVA----EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred HHHHHH----HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566788 99999999888877 999999999996 678999998 87
No 13
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=190.77 Aligned_cols=114 Identities=23% Similarity=0.195 Sum_probs=103.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---h---hhh-cceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---L---SQF-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~---~~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
|-||||| |||++++.++ +.|++|+|+++|.++. . ..+ |+.+++|||++.++|+.||.||+.|+..++ +
T Consensus 61 GLSGSGK-STLvR~~NrL-iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---G 135 (386)
T COG4175 61 GLSGSGK-STLVRLLNRL-IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---G 135 (386)
T ss_pred ecCCCCH-HHHHHHHhcc-CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---C
Confidence 5689999 9999999999 8999999999999963 2 333 457999999999999999999999999887 7
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY 125 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~ 125 (127)
.++.+.++++. ++++.+||..+.+. ++||||||||| ||+.+|+||+
T Consensus 136 v~~~er~~~a~----~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 136 VPKAEREERAL----EALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILL 187 (386)
T ss_pred CCHHHHHHHHH----HHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEE
Confidence 88899999999 99999999999888 99999999999 4789999998
No 14
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=2e-29 Score=190.80 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=101.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.+|||||+..+||++||+||+.|+...+ +.+..+
T Consensus 36 ~GpsGsGK-STLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~ 110 (353)
T TIGR03265 36 LGPSGCGK-TTLLRIIAGL-ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAE 110 (353)
T ss_pred ECCCCCCH-HHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 334678999999999999999999999986543 344556
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..++++ ++++.++|.+..++ .+|||||||||+ |+.+|++++ ||
T Consensus 111 ~~~~~~----~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 111 VAERVA----ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred HHHHHH----HHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 667788 99999999988887 999999999996 688999998 77
No 15
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=190.30 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=101.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.+|||+|++.+||++||+||+.|+...+ +.+..+
T Consensus 38 lGpsGsGK-STLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~ 112 (351)
T PRK11432 38 LGPSGCGK-TTVLRLVAGL-EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEE 112 (351)
T ss_pred ECCCCCcH-HHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 233578999999999999999999999987543 344566
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 113 ~~~~v~----~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 113 RKQRVK----EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred HHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 667788 99999999888877 999999999996 688999988 77
No 16
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=5.6e-29 Score=188.75 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=100.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhh----cceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQF----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~----r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|+++.. ..+ ++.++||+|++.+|+++||+||+.++..+.
T Consensus 25 ~G~sGsGK-STLLr~L~Gl-~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~--- 99 (363)
T TIGR01186 25 MGLSGSGK-STTVRMLNRL-IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL--- 99 (363)
T ss_pred ECCCCChH-HHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc---
Confidence 47899999 9999999999 89999999999998643 233 678999999999999999999999876543
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++...+..+++. ++++.++|....++ .+|||||||||+ |+.+|+||+ ||
T Consensus 100 ~~~~~~~~~~~~----~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 100 GWPEQERKEKAL----ELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHH----HHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 344556667788 99999999887777 999999999995 688999998 77
No 17
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=174.25 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=102.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|+||||| |||+|+++|+ ..|+.|+|.++|+.+.... ..-|.|||++.++|++|+.+|+.|+..++ ++.+.+..
T Consensus 38 GpSGcGK-TTLLnl~AGf-~~P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~ 110 (259)
T COG4525 38 GPSGCGK-TTLLNLIAGF-VTPSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRR 110 (259)
T ss_pred cCCCccH-HHHHHHHhcC-cCcccceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHH
Confidence 7899999 9999999999 8999999999999986532 23588999999999999999999999887 67888888
Q ss_pred hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
+.+. .++..+||.+..++ -+||||||||+ +|+.+|++|+ ||
T Consensus 111 ~~a~----q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 111 EIAH----QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred HHHH----HHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 8888 99999999887766 99999999999 5789999988 77
No 18
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.4e-29 Score=189.38 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=100.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|+++.. ...++.+|||||++.+||++||.||+.|+...+ +.+..+
T Consensus 51 lGpsGsGK-STLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~ 125 (377)
T PRK11607 51 LGASGCGK-STLLRMLAGF-EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAE 125 (377)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 334678999999999999999999999986543 234555
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 126 ~~~~v~----~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 126 IASRVN----EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred HHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667788 99999999887777 999999999996 688999988 77
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-29 Score=180.27 Aligned_cols=119 Identities=24% Similarity=0.155 Sum_probs=99.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc----
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL---- 72 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~---- 72 (127)
|.||||| |||||+|.|+ ..|++|+|+++|.++.. +.+|++|||++|.+++.+.++|.+|+..+..-+.
T Consensus 37 G~SGaGK-STLLR~lngl-~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~ 114 (258)
T COG3638 37 GPSGAGK-STLLRSLNGL-VDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR 114 (258)
T ss_pred CCCCCcH-HHHHHHHhcc-cCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHH
Confidence 7899999 9999999999 89999999999988532 5568899999999999999999999998754221
Q ss_pred -CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 -GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..++...+.+..+- +.|+.+|+.+.+.+ ++|||||||||+ |+.+|+||+ ||
T Consensus 115 slfglfsk~dk~~Al----~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 115 SLFGLFSKEDKAQAL----DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred HHhCCCCHHHHHHHH----HHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 11344455666777 99999999877655 999999999996 678999999 77
No 20
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=6.2e-29 Score=189.27 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=100.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| ||||++|+|+ .+|++|+|.++|+++.. ...++.+|||||++.+||++||+||+.|+...+ +.+..+
T Consensus 46 lGpsGsGK-STLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~ 120 (375)
T PRK09452 46 LGPSGCGK-TTVLRLIAGF-ETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAE 120 (375)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 233578999999999999999999999986543 334555
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.++|.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 121 ~~~~~~----~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 121 ITPRVM----EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred HHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566788 99999999888877 999999999996 678999988 77
No 21
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=8.3e-29 Score=187.87 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=100.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc--ceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE--GSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~--G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++ |+|.++|+++.. ...++.||||+|++.+||++||+||+.|+...+ +.+.
T Consensus 37 lGpsGsGK-STLLr~iaGl-~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~ 111 (362)
T TIGR03258 37 IGKSGCGK-TTLLRAIAGF-VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPK 111 (362)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCH
Confidence 37899999 9999999999 89999 999999998743 234568999999999999999999999987543 3455
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+++. ++++.++|.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 112 ~~~~~~v~----~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 112 ADIAERVA----DALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred HHHHHHHH----HHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 56667788 99999999988877 999999999996 688999988 77
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=1.1e-28 Score=186.12 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=100.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.|||+||++.+++.+||+||+.++.... +
T Consensus 37 iG~sGaGK-STLlr~I~gl-~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~ 111 (343)
T TIGR02314 37 IGASGAGK-STLIRCVNLL-ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---N 111 (343)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---C
Confidence 37899999 9999999999 89999999999998642 234678999999999999999999999876543 3
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+.++++. ++++.+|+.+..+. .+|||||||||+ |+.+|++|+ ||
T Consensus 112 ~~~~~~~~~v~----e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 112 TPKDEIKRKVT----ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCHHHHHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44556667788 99999999888777 999999999995 688999998 77
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=176.85 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=106.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec--ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER--NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~--~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
|.+|||| ||+||+|+++ +.|++|.|+++|.+. .+..+|++||.++.+..+|..||++||+.|+++++ ++...+
T Consensus 35 G~NGAGK-TT~LRmiatl-L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~ 109 (245)
T COG4555 35 GENGAGK-TTLLRMIATL-LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKE 109 (245)
T ss_pred cCCCCCc-hhHHHHHHHh-ccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhH
Confidence 7899999 9999999999 899999999999995 34678999999999999999999999999999887 677888
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+++ ++.+.++|.+++|+ .++|.||||||+ |+++|++++ ||
T Consensus 110 ~kari~----~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 110 IKARIA----ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred HHHHHH----HHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 888999 99999999999988 999999999995 689999987 77
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=2.2e-29 Score=182.11 Aligned_cols=119 Identities=20% Similarity=0.156 Sum_probs=101.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-ccccH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTK 78 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~ 78 (127)
|++|||| |||||+|+|+ .+|.+|+|+++|+++. .+++.+.++||||.+.....+||+|.+.++...+.. .....
T Consensus 35 GpNG~GK-STLLk~l~g~-l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~ 112 (258)
T COG1120 35 GPNGSGK-STLLKCLAGL-LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112 (258)
T ss_pred CCCCCCH-HHHHHHHhcc-CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCC
Confidence 7899999 9999999999 8999999999999864 467788999999999999999999999998654321 11224
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.++++.+. ++|+.+++.+..++ .+||||||||| +||++|+||+ ||
T Consensus 113 ~~D~~~v~----~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP 165 (258)
T COG1120 113 KEDEEIVE----EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP 165 (258)
T ss_pred HhHHHHHH----HHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC
Confidence 45556777 99999999999888 99999999999 5799999998 87
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2.1e-28 Score=182.11 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=100.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. ...++.|||+||++.+++.+|++||+.+....+ +....
T Consensus 39 lGpNGaGK-STLl~~l~Gl-~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~ 113 (306)
T PRK13537 39 LGPNGAGK-TTTLRMLLGL-THPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAA 113 (306)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHH
Confidence 47999999 9999999999 89999999999998643 346788999999999999999999999876554 33444
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+++. ++++.+++.+..++ .+||+|||||++ |+++|++|| ||
T Consensus 114 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 114 AARALVP----PLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred HHHHHHH----HHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5556777 99999999877777 999999999995 688999998 87
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=177.73 Aligned_cols=119 Identities=20% Similarity=0.104 Sum_probs=96.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC-ccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG-KDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~ 79 (127)
|++|||| |||+|+|.|+ +.|++|+|.++|.+.....-+..||||||.. .....+||+|.+.++...+.. ......
T Consensus 37 GPNGaGK-STLlK~iLGl-l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~ 114 (254)
T COG1121 37 GPNGAGK-STLLKAILGL-LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114 (254)
T ss_pred CCCCCCH-HHHHHHHhCC-CcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccH
Confidence 7999999 9999999999 8999999999999875544467899999964 333456999999987543311 112233
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.+++.++ ++|+.+|+.+..++ ++|||||+||| ||+.+|++|+ ||
T Consensus 115 ~d~~~v~----~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP 166 (254)
T COG1121 115 KDKEKVD----EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEP 166 (254)
T ss_pred HHHHHHH----HHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence 4467788 99999999999988 99999999999 5789999998 87
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=173.03 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|+||||| |||||++..+ ... .+|+|.++|+++. .-.+|+++|+|||.|+.|| +|++||+.++.+++
T Consensus 39 IGPSGcGK-ST~LR~lNRm-ndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~ 115 (253)
T COG1117 39 IGPSGCGK-STLLRCLNRM-NDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH 115 (253)
T ss_pred ECCCCcCH-HHHHHHHHhh-cccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh
Confidence 38999999 9999999998 444 4699999999963 3568999999999999999 89999999998876
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+.++.++ ..|+...|++ .++. ..||||||||+. ||.+|+||+ ||
T Consensus 116 ---g~~~~~ldeiVe----~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEP 176 (253)
T COG1117 116 ---GIKDKELDEIVE----SSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176 (253)
T ss_pred ---ccchHHHHHHHH----HHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCc
Confidence 333466777888 8888888853 2333 889999999994 788999998 77
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=3.5e-28 Score=180.56 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=99.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.+||++|++.+++.+|++||+.+....+ +....
T Consensus 25 ~G~NGaGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~ 99 (302)
T TIGR01188 25 LGPNGAGK-TTTIRMLTTL-LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKD 99 (302)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHH
Confidence 47899999 9999999999 89999999999998643 345678999999999999999999998876543 23344
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 100 ~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 100 EAEERAE----ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred HHHHHHH----HHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4556677 99999999877777 999999999995 678999988 87
No 29
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.6e-28 Score=184.33 Aligned_cols=117 Identities=20% Similarity=0.112 Sum_probs=98.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.++|++|++.+|+++||+||+.++...+ +....+
T Consensus 35 ~G~nGsGK-STLL~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~ 109 (369)
T PRK11000 35 VGPSGCGK-STLLRMIAGL-EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEE 109 (369)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHH
Confidence 47899999 9999999999 89999999999998743 223567999999999999999999999876533 234445
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 110 ~~~~~~----~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 110 INQRVN----QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred HHHHHH----HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556778 99999999877777 999999999995 678999998 87
No 30
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=4.9e-28 Score=183.21 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=99.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-ccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~ 79 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|+++.. ...++.++||+|++.+||++||.||+.++...+.. ......
T Consensus 34 lGpsGsGK-STLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~ 111 (353)
T PRK10851 34 LGPSGSGK-TTLLRIIAGL-EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAA 111 (353)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHH
Confidence 47899999 9999999999 89999999999998743 23456899999999999999999999987643210 123345
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+++. ++++.++|.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 112 ~~~~~~~----~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP 163 (353)
T PRK10851 112 AIKAKVT----QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEP 163 (353)
T ss_pred HHHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5566788 99999999887777 999999999996 678999998 87
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=7.8e-28 Score=170.69 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=97.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+....+ +
T Consensus 35 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~ 109 (216)
T TIGR00960 35 VGHSGAGK-STFLKLILGI-EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---G 109 (216)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---C
Confidence 47899999 9999999999 89999999999998632 124678999999999999999999998875432 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 110 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 110 VPPRDANERVS----AALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred CCHHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23334455677 99999999877766 999999999995 678999998 87
No 32
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=9.5e-29 Score=169.91 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=91.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
|+||||| |||+|+|+|+ ..|.+|+|+|+|++... ....+-++++||++++|.++||.+|+.++..... .+ ..+.
T Consensus 32 GpSGaGK-STLLnLIAGF-~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~ 106 (231)
T COG3840 32 GPSGAGK-STLLNLIAGF-ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQ 106 (231)
T ss_pred CCCCccH-HHHHHHHHhc-cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHH
Confidence 7899999 9999999999 89999999999999643 3456679999999999999999999998865321 22 2445
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHh
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNV 118 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~ 118 (127)
++.++ .++..+||..+.++ .+|||||||||+||
T Consensus 107 r~~v~----~aa~~vGl~~~~~RLP~~LSGGqRQRvALA 141 (231)
T COG3840 107 REKVE----AAAAQVGLAGFLKRLPGELSGGQRQRVALA 141 (231)
T ss_pred HHHHH----HHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence 66788 99999999999888 99999999999864
No 33
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=1.7e-27 Score=178.57 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=99.0
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
+-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.++|++|++.+|+.+||.||+.++...+ +....
T Consensus 1 l~G~nGsGK-STLl~~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGK-TTLLRLLAGF-EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCH-HHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 358999999 9999999999 89999999999998743 234568999999999999999999999876433 23344
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+++. ++++.+++.+..++ .+||||||||++ |+.+|++|+ ||
T Consensus 76 ~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP 127 (325)
T TIGR01187 76 EIKPRVL----EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEP 127 (325)
T ss_pred HHHHHHH----HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4456677 99999999887777 999999999996 678999988 87
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.8e-27 Score=170.79 Aligned_cols=118 Identities=22% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.++...+. .
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~ 107 (235)
T cd03261 32 IGPSGSGK-STLLRLIVGL-LRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--R 107 (235)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--C
Confidence 47899999 9999999999 89999999999988632 2356789999999999999999999988643221 1
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 108 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 108 LSEEEIREIVL----EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred CCHHHHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 23444455677 89999999876666 999999999995 678999998 87
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=1.4e-27 Score=169.47 Aligned_cols=117 Identities=23% Similarity=0.243 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---h-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---Q-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. . . .++.++|++|++.+++.+|++||+.+....+
T Consensus 36 ~G~nGsGK-STLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--- 110 (218)
T cd03255 36 VGPSGSGK-STLLNILGGL-DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--- 110 (218)
T ss_pred EcCCCCCH-HHHHHHHhCC-cCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---
Confidence 47899999 9999999999 89999999999998642 1 1 3467999999999999999999998875433
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.......+.+. ++++.+++.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 111 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 111 GVPKKERRERAE----ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CCCHHHHHHHHH----HHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 222333445677 89999999876666 999999999995 578999998 87
No 36
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.6e-27 Score=169.27 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=97.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+....+ +....
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~ 111 (218)
T cd03266 37 LGPNGAGK-TTTLRMLAGL-LEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGD 111 (218)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHH
Confidence 47899999 9999999999 89999999999998643 345678999999999999999999998765433 23344
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 112 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 163 (218)
T cd03266 112 ELTARLE----ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163 (218)
T ss_pred HHHHHHH----HHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4456677 99999999876666 999999999995 678999988 77
No 37
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=2.2e-27 Score=176.25 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=99.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.+||+||++.+++.+|+.||+.+...++ +.+..
T Consensus 34 ~G~NGaGK-TTLl~~l~Gl-~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~ 108 (301)
T TIGR03522 34 LGPNGAGK-STTMKIITGY-LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQ 108 (301)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHH
Confidence 48999999 9999999999 89999999999998643 345678999999999999999999999876554 23344
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..++++ ++++.+++.+..++ ..||+|||||++ ++++|++|+ ||
T Consensus 109 ~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 109 LLKQRVE----EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred HHHHHHH----HHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4556677 99999999887777 999999999994 689999988 77
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=2.7e-27 Score=178.44 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.+||+||++.+++.+|+.||+.+....+ +....
T Consensus 73 lGpNGaGK-STLl~~L~Gl-~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~ 147 (340)
T PRK13536 73 LGPNGAGK-STIARMILGM-TSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTR 147 (340)
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHH
Confidence 37899999 9999999999 89999999999998643 345778999999999999999999998765544 23334
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..++ .+||+|||||++ |+++|++|+ ||
T Consensus 148 ~~~~~~~----~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 148 EIEAVIP----SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred HHHHHHH----HHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4456677 89999999877776 999999999995 678999998 87
No 39
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=178.60 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=98.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.+||++|++.+++.+|+.||+.++...+ +
T Consensus 37 iG~nGsGK-STLlk~L~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~ 111 (343)
T PRK11153 37 IGASGAGK-STLIRCINLL-ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---G 111 (343)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---C
Confidence 37899999 9999999999 89999999999998642 124678999999999999999999999876443 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+++.+..++ .+||||||||++ |+.+|+||+ ||
T Consensus 112 ~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 112 TPKAEIKARVT----ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCHHHHHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34444556777 99999999877766 999999999995 678999998 87
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.7e-27 Score=168.44 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=97.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+++|+.+....+ +....
T Consensus 32 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~ 106 (220)
T cd03265 32 LGPNGAGK-TTTIKMLTTL-LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGA 106 (220)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHH
Confidence 48899999 9999999999 89999999999988642 344668999999999999999999998865433 23334
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 107 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 107 ERRERID----ELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred HHHHHHH----HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4455677 99999999876666 999999999995 678999988 87
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-27 Score=167.70 Aligned_cols=117 Identities=24% Similarity=0.215 Sum_probs=96.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+|++||+.+..... ......
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 106 (213)
T cd03259 32 LGPSGCGK-TTLLRLIAGL-ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAE 106 (213)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHH
Confidence 47899999 9999999999 89999999999998643 234567999999999999999999998765432 223334
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 107 ~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 107 IRARVR----ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred HHHHHH----HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 455677 89999999876666 999999999995 678999998 87
No 42
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.9e-28 Score=170.44 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=92.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
|.+|||| ||||++|+|+ +++.+|+|.++|+++.. ...|..|+||||...+|+.|||+||+.++...... .
T Consensus 36 G~NGaGK-TTlLkti~Gl-~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~ 109 (237)
T COG0410 36 GRNGAGK-TTLLKTIMGL-VRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----K 109 (237)
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----c
Confidence 7899999 9999999999 89999999999999743 55788999999999999999999999988654311 1
Q ss_pred HHHHhhhccchHHHHHHhC-CCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSG-HLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~-l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......++ ++.+.|- |.+..++ ++|||||||.++ |+.+|++|+ ||
T Consensus 110 ~~~~~~~e----~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 110 EAQERDLE----EVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred ccccccHH----HHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 11111245 6777774 5566666 999999999996 688999988 87
No 43
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=9.3e-28 Score=163.81 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhc-ceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|+||||| |||+-+++|+ ..|++|+|.+.|+++.. ..+| +++|+|||.+.+.|+||..||+...+.+.
T Consensus 42 VG~SGSGK-STLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~--- 116 (228)
T COG4181 42 VGPSGSGK-STLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR--- 116 (228)
T ss_pred EcCCCCcH-HhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc---
Confidence 37899999 9999999999 89999999999998632 2333 67999999999999999999999988876
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+-........+. ++|+.+||.+.++- .+|||||||||+ ++..|+||| ||
T Consensus 117 ge~~~~~~~~A~----~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEP 173 (228)
T COG4181 117 GESSADSRAGAK----ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP 173 (228)
T ss_pred CCccccHHHHHH----HHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCC
Confidence 323444556677 99999999887766 999999999997 478999999 77
No 44
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=171.95 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC----hhhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~----~~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
|.+|||| |||+++++|+ +.|++|+|.++|.++. ...+++.+|||+|++. .+-.-||.+.++|+.... +.+
T Consensus 37 G~nGsGK-STL~~~l~GL-l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~ 111 (235)
T COG1122 37 GPNGSGK-STLLKLLNGL-LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLP 111 (235)
T ss_pred CCCCCCH-HHHHHHHcCc-CcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCC
Confidence 7899999 9999999999 8999999999999864 4678999999999962 334449999999987644 566
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.++.++++. ++++.+++.+.+++ .+|||||||||+ ||.+|++|+ ||
T Consensus 112 ~~e~~~rv~----~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 112 REEIEERVA----EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred HHHHHHHHH----HHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 777888999 99999999988888 999999999997 578999988 77
No 45
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-28 Score=177.28 Aligned_cols=111 Identities=23% Similarity=0.206 Sum_probs=95.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC-------hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN-------LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~-------~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.||||| |||+|+|+|+ .+|+.|.|.++|+-+. ...-+++||||||+..+||++||+.|+.|+.+..
T Consensus 30 FG~SGsGK-Tslin~IaGL-~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~--- 104 (352)
T COG4148 30 FGPSGSGK-TSLINMIAGL-TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS--- 104 (352)
T ss_pred ecCCCCCh-hhHHHHHhcc-CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc---
Confidence 47899999 9999999999 8999999999998642 1334678999999999999999999999986532
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....++ .+.+.+|+.+.+++ .+|||||||||+ |...|++|+ ||
T Consensus 105 ------~~~~fd----~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP 155 (352)
T COG4148 105 ------MRAQFD----QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred ------chHhHH----HHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence 223455 88899999999988 999999999996 688999988 77
No 46
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.8e-27 Score=180.66 Aligned_cols=117 Identities=20% Similarity=0.168 Sum_probs=97.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh----hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ----FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~----~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|+++.. .. .++.++|++|++.+|+++|+.||+.++...+
T Consensus 60 vG~NGsGK-STLLr~I~Gl-~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~--- 134 (400)
T PRK10070 60 MGLSGSGK-STMVRLLNRL-IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA--- 134 (400)
T ss_pred ECCCCchH-HHHHHHHHcC-CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---
Confidence 47899999 9999999999 89999999999998642 11 2357999999999999999999999876543
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+..+++. ++++.++|.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 135 ~~~~~~~~~~~~----e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 135 GINAEERREKAL----DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHH----HHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 233444556677 99999999887777 999999999995 678999998 87
No 47
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-27 Score=168.48 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=95.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hh-cceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QF-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|+++.. . .. ++.++|++|++.+++.+|++||+.+...+.
T Consensus 41 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--- 115 (233)
T PRK11629 41 VGSSGSGK-STLLHLLGGL-DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--- 115 (233)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---
Confidence 48899999 9999999999 89999999999998642 1 12 257999999999999999999998865432
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.++++. ++++.+++.+..+. .+||||||||++ ++.+|+||+ ||
T Consensus 116 ~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 172 (233)
T PRK11629 116 KKKPAEINSRAL----EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172 (233)
T ss_pred CCCHHHHHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 223344456677 99999999876666 999999999995 578999988 87
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=4.6e-27 Score=174.64 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=97.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.+||++|++.+++.+|+.||+.+....+ +....
T Consensus 36 ~G~NGaGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~ 110 (303)
T TIGR01288 36 LGPNGAGK-STIARMLLGM-ISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTR 110 (303)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHH
Confidence 47899999 9999999999 89999999999998632 345678999999999999999999998755432 23334
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 111 ~~~~~~~----~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 111 EIEAVIP----SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred HHHHHHH----HHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4455677 89999999877766 999999999995 678999988 87
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.3e-27 Score=166.85 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+....+ +....+.
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 105 (210)
T cd03269 32 LGPNGAGK-TTTIRMILGI-ILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEA 105 (210)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHH
Confidence 48899999 9999999999 89999999999988754 45678999999999999999999998765433 2233444
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 106 ~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 106 RRRID----EWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred HHHHH----HHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56677 89999999876666 999999999995 578999988 87
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.5e-27 Score=166.83 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=95.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++.. .++.++|++|++.+++.+|++||+.+....+ +......
T Consensus 36 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 108 (220)
T cd03293 36 VGPSGCGK-STLLRIIAGL-ERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEA 108 (220)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHH
Confidence 47899999 9999999999 89999999999998752 4567999999999999999999998865432 2233344
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 109 ~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 109 RERAE----ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred HHHHH----HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55677 99999999876666 999999999995 678999988 87
No 51
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-27 Score=166.76 Aligned_cols=117 Identities=24% Similarity=0.229 Sum_probs=96.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+|+.+|+.||+.+....+ +....
T Consensus 31 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~ 105 (211)
T cd03264 31 LGPNGAGK-TTLMRILATL-TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSK 105 (211)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHH
Confidence 48999999 9999999999 89999999999987642 345678999999999999999999998865443 22333
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 106 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 106 EVKARVD----EVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred HHHHHHH----HHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4455677 89999999876666 999999999995 678999988 87
No 52
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=7.2e-27 Score=165.35 Aligned_cols=117 Identities=23% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.++...+ .
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~ 107 (214)
T cd03292 33 VGPSGAGK-STLLKLIYKE-ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---G 107 (214)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---C
Confidence 48899999 9999999999 89999999999998642 235678999999999999999999998875432 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 108 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 108 VPPREIRKRVP----AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCHHHHHHHHH----HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 23344455677 89999999876666 999999999995 688999988 77
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=7.1e-27 Score=166.10 Aligned_cols=117 Identities=24% Similarity=0.196 Sum_probs=97.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++|++|++.+++.+|+.+|+.+....+ .....
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~ 108 (220)
T cd03263 34 LGHNGAGK-TTTLKMLTGE-LRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKS 108 (220)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHH
Confidence 48899999 9999999999 89999999999998642 345677999999999999999999998865433 22333
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 109 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 109 EIKEEVE----LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred HHHHHHH----HHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4445677 89999999876666 999999999995 578999998 77
No 54
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.4e-27 Score=170.00 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=100.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc-----
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL----- 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~----- 72 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...+..|+..||...+|++|||.||+..+...+.
T Consensus 36 IGPNGAGK-TTlfNlitG~-~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~ 113 (250)
T COG0411 36 IGPNGAGK-TTLFNLITGF-YKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGL 113 (250)
T ss_pred ECCCCCCc-eeeeeeeccc-ccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhh
Confidence 37999999 9999999999 99999999999999743 3457889999999999999999999998754221
Q ss_pred ---Cc-cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 73 ---GK-DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 73 ---~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
+. .....+..+++. ++|+.+||.+..+. ++||+|||+++ +|+.+|++|+ ||
T Consensus 114 l~~~~~~~~e~~~~e~A~----~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 114 LGRPRARKEEREARERAR----ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred hccccchhhHHHHHHHHH----HHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 00 112455567777 99999999999988 99999999999 4789999988 87
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.9e-28 Score=170.39 Aligned_cols=119 Identities=20% Similarity=0.157 Sum_probs=101.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| ||.+.++.|+ ++|++|+|.++|.++.. .+.|..|||+||++..|-.+||+||+.....++.. ...
T Consensus 36 LGPNGAGK-TT~Fymi~Gl-v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~ 112 (243)
T COG1137 36 LGPNGAGK-TTTFYMIVGL-VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLK 112 (243)
T ss_pred ECCCCCCc-eeEEEEEEEE-EecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chh
Confidence 37999999 9999999999 89999999999999754 45677899999999999999999999988776521 122
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+.+++ ++|+.|.+.+..+. .+||||||+|+. |+.+|+.++ ||
T Consensus 113 ~~~~~~~l~----~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 113 KAERKEELD----ALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred HHHHHHHHH----HHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 234455677 99999999988888 999999999994 788999887 77
No 56
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.2e-26 Score=164.39 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=96.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+....+ +
T Consensus 34 ~G~nGsGK-STLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~ 108 (214)
T TIGR02673 34 TGPSGAGK-TTLLKLLYGA-LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---G 108 (214)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---C
Confidence 37899999 9999999999 89999999999998642 134678999999999999999999998865432 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 109 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 109 KKEREIQRRVG----AALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCHHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 23334455677 99999999876666 999999999995 578999988 87
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1.1e-26 Score=164.38 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=96.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|++||+.++...+ .....+
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 106 (213)
T cd03301 32 LGPSGCGK-TTTLRMIAGL-EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDE 106 (213)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHH
Confidence 48899999 9999999999 89999999999998643 223467999999999999999999998865432 233444
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 107 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 107 IDERVR----EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred HHHHHH----HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 455677 89999999876666 999999999995 678999988 87
No 58
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.4e-26 Score=164.71 Aligned_cols=117 Identities=24% Similarity=0.215 Sum_probs=95.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hhc-ceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. . .++ +.++|++|++.+++.+|++||+.+....+
T Consensus 37 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--- 111 (221)
T TIGR02211 37 VGSSGSGK-STLLHLLGGL-DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--- 111 (221)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---
Confidence 47899999 9999999999 89999999999998632 1 123 57999999999999999999998865432
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 112 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 168 (221)
T TIGR02211 112 KKSVKEAKERAY----EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP 168 (221)
T ss_pred CCCHHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 122333445677 89999999876666 999999999995 578999998 87
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=165.96 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=96.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+....+ .
T Consensus 37 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~ 111 (233)
T cd03258 37 IGRSGAGK-STLIRCINGL-ERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---G 111 (233)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---C
Confidence 47899999 9999999999 89999999999998642 123678999999999999999999998765432 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 112 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 112 VPKAEIEERVL----ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred CCHHHHHHHHH----HHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 23333445677 89999999877666 999999999995 578999988 87
No 60
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=1.5e-26 Score=162.84 Aligned_cols=117 Identities=26% Similarity=0.242 Sum_probs=96.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---h----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---L----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++. . ...++.++|++|++.+++.+|++||+.+.....
T Consensus 30 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~--- 104 (206)
T TIGR03608 30 IGESGSGK-STLLNIIGLL-EKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK--- 104 (206)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---
Confidence 47899999 9999999999 8999999999999843 1 124568999999999999999999998865432
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 105 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 105 KLSKKEKREKKK----EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred CCCHHHHHHHHH----HHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 223344455677 99999999877776 999999999995 688999998 87
No 61
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.6e-26 Score=176.18 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=97.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCE----ecC---hh---hhc-ceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGH----ERN---LS---QFR-KLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~----~~~---~~---~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+ ++. .. .+| +.++||+|++.+++++|+.||+.++...
T Consensus 56 ~G~nGsGK-STLlr~L~Gl-~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~ 133 (382)
T TIGR03415 56 MGLSGSGK-SSLLRAVNGL-NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEM 133 (382)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHh
Confidence 47899999 9999999999 8999999999996 331 11 223 5799999999999999999999988654
Q ss_pred ccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 71 KLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. +.+..+..+++. ++++.+||.++.+. .+||||||||++ |+.+|+||+ ||
T Consensus 134 ~---g~~~~~~~~~a~----e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 134 Q---GMPEAERRKRVD----EQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred c---CCCHHHHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3 334455566778 99999999887777 999999999995 688999998 77
No 62
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=1.7e-26 Score=165.28 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=95.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|+++.. .. .+..++|++|++.+++.+|++||+.+....+ ...
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~ 106 (232)
T cd03218 32 LGPNGAGK-TTTFYMIVGL-VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLS 106 (232)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCC
Confidence 47899999 9999999999 89999999999998632 22 3457999999999999999999998765332 222
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 107 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 107 KKEREEKLE----ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred HHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 333445677 89999999876666 999999999995 678999988 87
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=2.1e-26 Score=165.20 Aligned_cols=120 Identities=19% Similarity=0.099 Sum_probs=95.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc--
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD-- 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~-- 75 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .+..++|++|++.+++.+|++||+.++........
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~ 109 (236)
T cd03219 32 IGPNGAGK-TTLFNLISGF-LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLL 109 (236)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccc
Confidence 48999999 9999999999 89999999999998643 22 24579999999999999999999988654321000
Q ss_pred -----ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 -----LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+.+. ++++.+++.+..+. .+||||||||++ ++.+|++|+ ||
T Consensus 110 ~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 110 LARARREEREARERAE----ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred cccccccHHHHHHHHH----HHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01233445677 89999999877666 999999999995 678999988 87
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.8e-26 Score=166.40 Aligned_cols=117 Identities=25% Similarity=0.269 Sum_probs=96.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++.. ..++..++|++|++.+++.+|++||+.++.... ....
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 107 (242)
T cd03295 33 IGPSGSGK-TTTMKMINRL-IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPK 107 (242)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCH
Confidence 48999999 9999999999 89999999999998642 345678999999999999999999998765432 2233
Q ss_pred HHHHhhhccchHHHHHHhCCCc--cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLP--RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~--~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.+. ++++.+++.. ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 108 ~~~~~~~~----~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 108 EKIRERAD----ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred HHHHHHHH----HHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 44455677 9999999975 5555 999999999995 678999998 77
No 65
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.8e-26 Score=164.39 Aligned_cols=117 Identities=23% Similarity=0.226 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. . .+++.++|++|++.+++.+|+.||+.+....+ +
T Consensus 34 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~ 108 (222)
T PRK10908 34 TGHSGAGK-STLLKLICGI-ERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---G 108 (222)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---C
Confidence 47899999 9999999999 89999999999998632 1 24678999999999989999999998865432 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 109 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 109 ASGDDIRRRVS----AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred CCHHHHHHHHH----HHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33344445677 89999999876666 999999999995 578999988 87
No 66
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=166.34 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=95.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-ccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. ...++.++|++|++.+++.+|+.||+.++...+.. ......
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 111 (239)
T cd03296 34 LGPSGSGK-TTLLRLIAGL-ERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA 111 (239)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHH
Confidence 47899999 9999999999 89999999999998643 22356799999999999999999999876543210 001223
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 112 ~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 112 EIRAKVH----ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred HHHHHHH----HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3345667 89999999876666 999999999995 678999988 87
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=2.1e-26 Score=162.83 Aligned_cols=118 Identities=23% Similarity=0.242 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++.+++.+|+.||+.++..... ..
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~ 107 (213)
T cd03262 32 IGPSGSGK-STLLRCINLL-EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GM 107 (213)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CC
Confidence 47999999 9999999999 89999999999998632 3456789999999999999999999987643111 22
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 108 ~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 162 (213)
T cd03262 108 SKAEAEERAL----ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162 (213)
T ss_pred CHHHHHHHHH----HHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3334455677 89999999876666 999999999995 578999988 77
No 68
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=2e-26 Score=174.56 Aligned_cols=115 Identities=23% Similarity=0.198 Sum_probs=95.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+|+++||+||+.++....
T Consensus 29 ~G~nGsGK-STLl~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--- 103 (354)
T TIGR02142 29 FGRSGSGK-TTLIRLIAGL-TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--- 103 (354)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc---
Confidence 48899999 9999999999 89999999999998632 234678999999999999999999998865321
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 104 --~~~~~~~~~~----~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 104 --RPSERRISFE----RVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred --ChhHHHHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1223345677 99999999887777 999999999995 678999998 87
No 69
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=167.52 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=105.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| ||++|+|.|+ +.|++|+|.++|.+++. ..+.+|||.|++..+|+.+||.|.+.|.+.++ +++..+.
T Consensus 34 lG~NGAGK-TTtfRmILgl-le~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~ 107 (300)
T COG4152 34 LGPNGAGK-TTTFRMILGL-LEPTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEI 107 (300)
T ss_pred ecCCCCCc-cchHHHHhcc-CCccCceEEEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHH
Confidence 37899999 9999999999 89999999999999863 35678999999999999999999999999987 7889999
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
...+. .||+++++...... .+||.|++|++ +++++|++++ ||
T Consensus 108 ~~~~~----~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 108 QKKLQ----AWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred HHHHH----HHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 99999 99999999877665 99999999999 4799999988 77
No 70
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2.6e-26 Score=162.26 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++. .++.+|+.||+.+..... ...
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~ 107 (211)
T cd03225 33 VGPNGSGK-STLLRLLNGL-LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLP 107 (211)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCC
Confidence 47899999 9999999999 89999999999988632 345678999999975 466789999998764322 223
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 108 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 108 EEEIEERVE----EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred HHHHHHHHH----HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 333445677 89999999876666 999999999995 678999988 87
No 71
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.94 E-value=3e-26 Score=159.80 Aligned_cols=116 Identities=19% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++. ++ ..|++||+.+.....
T Consensus 24 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~--- 97 (190)
T TIGR01166 24 LGANGAGK-STLLLHLNGL-LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNL--- 97 (190)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHc---
Confidence 47899999 9999999999 89999999999998631 234668999999973 45 469999998864322
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 98 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 98 GLSEAEVERRVR----EALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred CCCHHHHHHHHH----HHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 223344445677 89999999877766 999999999995 678999988 87
No 72
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-26 Score=162.64 Aligned_cols=117 Identities=24% Similarity=0.204 Sum_probs=94.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+...... .. ...
T Consensus 30 ~G~nGsGK-STLl~~l~gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~ 104 (211)
T cd03298 30 VGPSGSGK-STLLNLIAGF-ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAE 104 (211)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHH
Confidence 48899999 9999999999 89999999999998643 2235679999999999999999999987543211 11 123
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 105 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 105 DRQAIE----VALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred HHHHHH----HHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 345677 89999999876666 999999999995 578999988 77
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.5e-26 Score=167.42 Aligned_cols=117 Identities=23% Similarity=0.199 Sum_probs=95.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh----hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ----FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~----~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .++.++|++|++.+++.+|+.||+.+.....
T Consensus 56 ~G~nGsGK-STLl~~L~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--- 130 (269)
T cd03294 56 MGLSGSGK-STLLRCINRL-IEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--- 130 (269)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---
Confidence 47899999 9999999999 89999999999998642 11 2357999999999999999999998865432
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 131 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 131 GVPRAEREERAA----EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred CCCHHHHHHHHH----HHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 223334445677 89999999877666 999999999995 678999998 87
No 74
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=4e-26 Score=164.02 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=95.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ...++.++|++|++.+++.+|+.+|+.+....+ .....
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~ 107 (236)
T TIGR03864 33 LGPNGAGK-STLFSLLTRL-YVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRA 107 (236)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHH
Confidence 48899999 9999999999 89999999999988642 223457999999999989999999998765432 22333
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+.+. ++++.+|+.+..++ .+||+||+||++ ++.+|+|++ ||
T Consensus 108 ~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 108 EARERIA----ALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred HHHHHHH----HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3445677 89999999876666 999999999995 688999988 77
No 75
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.2e-26 Score=165.40 Aligned_cols=115 Identities=20% Similarity=0.146 Sum_probs=95.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. .+..++|++|++.+++.+|+.||+.+..... +....+.
T Consensus 33 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 105 (255)
T PRK11248 33 LGPSGCGK-TTLLNLIAGF-VPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQR 105 (255)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHH
Confidence 47899999 9999999999 89999999999998743 2346899999999999999999998764332 2233444
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 106 ~~~~~----~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 106 LEIAH----QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred HHHHH----HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55677 99999999876666 999999999995 678999988 87
No 76
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3.3e-27 Score=162.49 Aligned_cols=117 Identities=24% Similarity=0.265 Sum_probs=99.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----------------hhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----------------SQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----------------~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
|++|||| ||+|+||.-+ ..|+.|.|.++|+++.. ..+|.++|+|||++++|.+|||.||+.-
T Consensus 39 GsSGSGK-STfLRCiN~L-E~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViE 116 (256)
T COG4598 39 GSSGSGK-STFLRCINFL-EKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE 116 (256)
T ss_pred cCCCCch-hHHHHHHHhh-cCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHh
Confidence 7999999 9999999999 89999999999987421 3357789999999999999999999976
Q ss_pred HHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 67 ATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.. +.. +.++.+..++++ .+|..+|+.+..+. ..|||||+||++ |+.+|++++ ||
T Consensus 117 aPv-hVL-g~~k~ea~e~Ae----~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 117 APV-HVL-GVSKAEAIERAE----KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred cch-Hhh-cCCHHHHHHHHH----HHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence 432 211 567888888999 99999999888777 999999999996 678999977 66
No 77
>KOG0061|consensus
Probab=99.94 E-value=2.2e-26 Score=184.32 Aligned_cols=119 Identities=28% Similarity=0.350 Sum_probs=108.8
Q ss_pred CCCCCChHHHHHHHHhCCCCC---CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS---GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~---~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| |||+++|+|. .. ..+|+|++||+....+.+++.+|||.|++.+++.+||+|++.|.+.++.+...+..
T Consensus 63 G~SGsGK-tTLL~~Lagr-~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~ 140 (613)
T KOG0061|consen 63 GPSGSGK-TTLLNALAGR-LNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKE 140 (613)
T ss_pred CCCCCCH-HHHHHHHhcc-ccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHH
Confidence 7999999 9999999999 55 38999999998888888899999999999999999999999999999987767788
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+++++ ++++.+||..+.|. +.+|||||+||+ |+.+|.||| ||
T Consensus 141 ~k~~~V~----~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEP 197 (613)
T KOG0061|consen 141 EKRERVE----EVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEP 197 (613)
T ss_pred HHHHHHH----HHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCC
Confidence 8889999 99999999988887 369999999996 688999999 88
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.8e-26 Score=164.25 Aligned_cols=120 Identities=24% Similarity=0.164 Sum_probs=94.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc---
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL--- 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~--- 72 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|+++.. ...++.++|++|++.+++.+|+.||+.+......
T Consensus 33 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 110 (241)
T cd03256 33 IGPSGAGK-STLLRCLNGL-VEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTW 110 (241)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhh
Confidence 47899999 9999999999 89999999999998642 2346789999999999999999999987532100
Q ss_pred --CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 --GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..........+.+. ++++.+++.+..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 111 ~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 171 (241)
T cd03256 111 RSLFGLFPKEEKQRAL----AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171 (241)
T ss_pred hhhcccCcHHHHHHHH----HHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 00111123345567 89999999876666 999999999995 578999998 87
No 79
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=6.1e-26 Score=162.14 Aligned_cols=120 Identities=28% Similarity=0.306 Sum_probs=95.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCC---CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS---GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~---~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|+++.....++.++|++|++.+++.+|+.||+.++...........
T Consensus 39 ~G~nGsGK-STLlk~l~G~-~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 116 (226)
T cd03234 39 LGSSGSGK-TTLLDAISGR-VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD 116 (226)
T ss_pred ECCCCCCH-HHHHHHHhCc-cCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccch
Confidence 47899999 9999999999 78 8999999999987655567889999999999999999999998654321111111
Q ss_pred HHHHhhhccchHH-HHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCH-FLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~-~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+. . +++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 117 ~~~~~~~~----~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP 170 (226)
T cd03234 117 AIRKKRVE----DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170 (226)
T ss_pred HHHHHHHH----HHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 22223344 5 7889998776666 999999999995 678999988 77
No 80
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=6.2e-26 Score=162.10 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=95.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hh-cceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QF-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. . .. ++.++|++|++.+++.+|+.||+.+....+
T Consensus 42 ~G~nGsGK-STLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~--- 116 (228)
T PRK10584 42 IGESGSGK-STLLAILAGL-DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--- 116 (228)
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---
Confidence 47899999 9999999999 89999999999998632 1 12 357999999999999999999998764332
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++.+..++ .+||+|||||++ |+.+|++|+ ||
T Consensus 117 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 117 GESSRQSRNGAK----ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CCCHHHHHHHHH----HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 223344456677 99999999876666 999999999995 678999988 87
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.6e-26 Score=168.13 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=97.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++|++|++ .+++.+||.||+.++.... +..
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~ 113 (279)
T PRK13650 39 IGHNGSGK-STTVRLIDGL-LEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIP 113 (279)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCC
Confidence 47899999 9999999999 89999999999998742 34567899999997 4677889999998865432 334
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+++. ++++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 114 ~~~~~~~~~----~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 114 HEEMKERVN----EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred HHHHHHHHH----HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 555556777 99999999877777 999999999995 688999998 77
No 82
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=5.5e-26 Score=161.05 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=94.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
.|++|||| |||+++|+|+ ++|++|+|+++|+++.. ...++.++|++|++.+++.+|+.||+.+...... .....
T Consensus 30 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~ 104 (213)
T TIGR01277 30 MGPSGAGK-STLLNLIAGF-IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAE 104 (213)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHH
Confidence 48899999 9999999999 89999999999998643 2346779999999999999999999987543211 11122
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|+|++ ||
T Consensus 105 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 105 QQEKVV----DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred HHHHHH----HHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 344567 89999999876666 999999999995 578999988 77
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2.9e-26 Score=161.60 Aligned_cols=113 Identities=20% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++.....++.++|++|++. .+..+|+.||+.++.... . .
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~-- 102 (205)
T cd03226 32 TGKNGAGK-TTLAKILAGL-IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A-- 102 (205)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--
Confidence 47899999 9999999999 89999999999998754445678999999974 344679999998764321 1 1
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 103 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 103 GNEQAE----TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred cHHHHH----HHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 124566 89999999877777 999999999995 578999988 87
No 84
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.1e-26 Score=172.71 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=93.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.++|++|++.+|+.+||+||+.++..
T Consensus 30 ~G~nGsGK-STLl~~iaGl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----- 102 (352)
T PRK11144 30 FGRSGAGK-TSLINAISGL-TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA----- 102 (352)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-----
Confidence 37899999 9999999999 89999999999988632 2346789999999999999999999987532
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+++. ++++.+++.+..++ .+||||||||++ |+.+|++|+ ||
T Consensus 103 ----~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEP 155 (352)
T PRK11144 103 ----KSMVAQFD----KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred ----hhhHHHHH----HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11234567 89999999877777 999999999995 678999988 87
No 85
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=8.8e-26 Score=165.25 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=95.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+...... .
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~ 114 (269)
T PRK11831 39 MGPSGIGK-TTLLRLIGGQ-IAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--Q 114 (269)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--C
Confidence 47899999 9999999999 89999999999988642 1245679999999999999999999987643211 1
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.........+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 115 ~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 170 (269)
T PRK11831 115 LPAPLLHSTVM----MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170 (269)
T ss_pred CCHHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 22333445667 89999999877666 999999999995 578999988 87
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=8.9e-26 Score=163.26 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=95.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----------SQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.++...
T Consensus 35 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (250)
T PRK11264 35 IGPSGSGK-TTLLRCINLL-EQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI 112 (250)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 47899999 9999999999 89999999999988642 23466899999999999999999999875431
Q ss_pred ccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 71 KLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. ........+.+. ++++.+++.+..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 113 ~~--~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEP 171 (250)
T PRK11264 113 VK--GEPKEEATARAR----ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171 (250)
T ss_pred hc--CCCHHHHHHHHH----HHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 223344455677 89999999876666 999999999995 678999998 77
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.9e-26 Score=166.69 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.+|||||++. .+...||+||+.++.... +
T Consensus 39 ~G~nGaGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~ 113 (287)
T PRK13637 39 IGHTGSGK-STLIQHLNGL-LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---G 113 (287)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---C
Confidence 47899999 9999999999 89999999999998742 245678999999863 233569999998865432 3
Q ss_pred ccHHHHHhhhccchHHHHHHhCCC--ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHL--PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+||. +..++ .+||||||||++ |+.+|+||+ ||
T Consensus 114 ~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEP 171 (287)
T PRK13637 114 LSEEEIENRVK----RAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171 (287)
T ss_pred CCHHHHHHHHH----HHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 44555566778 999999996 55666 999999999995 688999988 77
No 88
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=7.8e-26 Score=162.79 Aligned_cols=118 Identities=21% Similarity=0.179 Sum_probs=96.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++|++|++.+++.+|+.+|+.+...... ..
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~ 108 (240)
T PRK09493 33 IGPSGSGK-STLLRCINKL-EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GA 108 (240)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CC
Confidence 47899999 9999999999 89999999999998642 2346789999999999999999999987542111 22
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 109 ~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 109 SKEEAEKQAR----ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred CHHHHHHHHH----HHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3344455677 99999999876666 999999999995 678999988 77
No 89
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.8e-26 Score=159.81 Aligned_cols=115 Identities=20% Similarity=0.141 Sum_probs=94.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+.+|+.+.....
T Consensus 29 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--- 103 (214)
T cd03297 29 FGASGAGK-STLLRCIAGL-EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK--- 103 (214)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---
Confidence 48899999 9999999999 89999999999988631 234668999999999999999999998764321
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+++. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 104 --~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 104 --RNREDRISVD----ELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred --CHHHHHHHHH----HHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1223345677 89999999866666 999999999995 678999988 77
No 90
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=5.6e-26 Score=174.28 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=98.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-cccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~ 77 (127)
-|++|||| |||+|+|+|+ ++|++|+|+++|+++.. ..+++.+|||+|++.+++.+|++||+.++...+.. ....
T Consensus 35 iGpNGaGK-STLLk~LaGl-l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~ 112 (402)
T PRK09536 35 VGPNGAGK-TTLLRAINGT-LTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW 112 (402)
T ss_pred ECCCCchH-HHHHHHHhcC-CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCC
Confidence 47899999 9999999999 89999999999998643 45677899999999999999999999886432210 0111
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+++. ++++.+++.+..++ .+||+|||||++ |+++|+||+ ||
T Consensus 113 ~~~~~~~v~----~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEP 166 (402)
T PRK09536 113 TETDRAAVE----RAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP 166 (402)
T ss_pred CHHHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 233456677 99999999887777 999999999995 689999998 87
No 91
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=9.9e-26 Score=169.40 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=96.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++.. ..+++.++||+|++ .++|.+|+.+|+.+....+.
T Consensus 53 vG~sGsGK-STLlk~i~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~- 129 (331)
T PRK15079 53 VGESGCGK-STFARAIIGL-VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH- 129 (331)
T ss_pred ECCCCCCH-HHHHHHHHCC-CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-
Confidence 47899999 9999999999 89999999999998642 23467899999997 68999999999988654321
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+..+.+. ++++.+++. +..+. .+|||||+|||+ |+.+|++|+ ||
T Consensus 130 ~~~~~~~~~~~~~----~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP 188 (331)
T PRK15079 130 PKLSRQEVKDRVK----AMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEP 188 (331)
T ss_pred cCCCHHHHHHHHH----HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1234555666777 999999995 44555 999999999995 688999998 77
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=5e-26 Score=160.61 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=93.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.++...+ ..
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~---- 102 (208)
T cd03268 32 LGPNGAGK-TTTMKIILGL-IKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI---- 102 (208)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----
Confidence 48899999 9999999999 89999999999987643 344667999999999999999999998865432 11
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 103 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 103 RKKRID----EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred cHHHHH----HHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 124566 88999999876666 999999999995 678999988 87
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=5.5e-26 Score=163.68 Aligned_cols=120 Identities=22% Similarity=0.120 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc---
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL--- 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~--- 72 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.+......
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (243)
T TIGR02315 34 IGPSGAGK-STLLRCINRL-VEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTW 111 (243)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccch
Confidence 48899999 9999999999 89999999999988632 2246789999999999999999999976432100
Q ss_pred --CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 --GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+..+++. ++++.+++.+..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 112 ~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 112 RSLLGRFSEEDKERAL----SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred hhhhccccHHHHHHHH----HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00011223345667 89999999876666 999999999995 578999998 87
No 94
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=165.65 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.|+|++|++ .+++..|+.||+.++.... +..
T Consensus 39 ~G~nGaGK-STLl~~i~G~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~ 113 (279)
T PRK13635 39 VGHNGSGK-STLAKLLNGL-LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVP 113 (279)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCC
Confidence 48899999 9999999999 89999999999998743 34567899999997 4677789999998765432 233
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+++. ++++.++|.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 114 ~~~~~~~~~----~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 114 REEMVERVD----QALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred HHHHHHHHH----HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444456677 99999999877766 999999999995 688999998 77
No 95
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=164.97 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=95.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.++|++|++. .++.+|++||+.+..... ...
T Consensus 41 ~G~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~ 115 (271)
T PRK13632 41 LGHNGSGK-STISKILTGL-LKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVP 115 (271)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCC
Confidence 48999999 9999999999 89999999999998642 345778999999974 677889999998764322 223
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 116 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 116 PKKMKDIID----DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred HHHHHHHHH----HHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344455677 89999999877777 999999999995 678999988 77
No 96
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=165.77 Aligned_cols=116 Identities=24% Similarity=0.194 Sum_probs=93.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC-------hhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN-------LSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~-------~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++. ....++.+|||+|++ .++ ..||.||+.++....
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~- 114 (290)
T PRK13634 39 IGHTGSGK-STLLQHLNGL-LQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF- 114 (290)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc-
Confidence 47899999 9999999999 8999999999999863 134567899999986 455 469999998875432
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+..+++. ++++.++|. ...++ .+||+|||||++ |+.+|+||+ ||
T Consensus 115 --~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEP 172 (290)
T PRK13634 115 --GVSEEDAKQKAR----EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172 (290)
T ss_pred --CCCHHHHHHHHH----HHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 234445556777 999999996 55566 999999999995 688999998 77
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=164.96 Aligned_cols=117 Identities=19% Similarity=0.077 Sum_probs=95.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+++.. ..+++.++|++|++. .++.+||.||+.++.... +..
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~ 111 (274)
T PRK13647 37 LGPNGAGK-STLLLHLNGI-YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLD 111 (274)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCC
Confidence 47899999 9999999999 89999999999998642 345678999999963 445679999998764322 233
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 112 ~~~~~~~~~----~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 112 KDEVERRVE----EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred HHHHHHHHH----HHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 444456677 99999999877776 999999999995 688999998 77
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=2.1e-25 Score=161.23 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=94.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-----cceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-----EGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-----~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+|+ +|+|+++|+++.. ..+++.++|++|++.+++ +|+.||+.+....+
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~ 109 (247)
T TIGR00972 33 IGPSGCGK-STLLRSLNRM-NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH 109 (247)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc
Confidence 47899999 9999999999 8888 9999999998642 345678999999999998 99999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+.+. ++++.+++. +..+. .+||+|||||++ ++.+|++++ ||
T Consensus 110 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 171 (247)
T TIGR00972 110 G--IKDKKELDEIVE----ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171 (247)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 122344455677 899999997 44555 999999999995 678999988 77
No 99
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=166.98 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=93.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---------------------------hhhhcceEEEEeeCc-c
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---------------------------LSQFRKLSCYIMQDN-Q 53 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---------------------------~~~~r~~ig~v~q~~-~ 53 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.+.. ...+++.+|||+|++ .
T Consensus 39 iG~nGsGK-STLl~~L~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~ 116 (305)
T PRK13651 39 IGQTGSGK-TTFIEHLNAL-LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY 116 (305)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCccc
Confidence 47899999 9999999999 8999999999987531 134567899999985 2
Q ss_pred CCCCCCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee-
Q psy1497 54 LHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY- 125 (127)
Q Consensus 54 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~- 125 (127)
.+...||.||+.|+.... +....+..+++. ++++.+||. +..++ .+||||||||++ |+.+|+||+
T Consensus 117 ~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlL 189 (305)
T PRK13651 117 QLFEQTIEKDIIFGPVSM---GVSKEEAKKRAA----KYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVF 189 (305)
T ss_pred ccccccHHHHHHhhHHHc---CCCHHHHHHHHH----HHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 333569999998875432 344556667788 999999996 56666 999999999996 678999998
Q ss_pred -cC
Q psy1497 126 -EP 127 (127)
Q Consensus 126 -~~ 127 (127)
||
T Consensus 190 DEP 192 (305)
T PRK13651 190 DEP 192 (305)
T ss_pred eCC
Confidence 77
No 100
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=161.36 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=95.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+...... ...
T Consensus 35 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~ 110 (241)
T PRK10895 35 LGPNGAGK-TTTFYMVVGI-VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLS 110 (241)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccC
Confidence 47899999 9999999999 89999999999998642 2245689999999999999999999987643221 122
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+....+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 111 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 111 AEQREDRAN----ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred HHHHHHHHH----HHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 333445677 89999999776666 999999999995 578999988 87
No 101
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=160.96 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=94.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---------hhhhcceEEEEeeCccCCCCCCHHHHHHHHH-hcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---------LSQFRKLSCYIMQDNQLHANLTVEEAMNVAT-ALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---------~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~-~~~ 71 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|.++. ....++.++|++|++.+++.+|+.||+.+.. ...
T Consensus 34 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~ 111 (242)
T PRK11124 34 LGPSGAGK-SSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL 111 (242)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc
Confidence 48999999 9999999999 8999999999999762 1234678999999999999999999997532 221
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+..+.+. ++++.+|+.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 112 ---~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP 168 (242)
T PRK11124 112 ---GLSKDQALARAE----KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168 (242)
T ss_pred ---CCCHHHHHHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 122333445667 89999999876666 999999999995 578999988 77
No 102
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=1.4e-25 Score=160.18 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCCCCCChHHHHHHHHhCCCC-----CCCcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT-----SGTEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~-----~~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ . +|++|+|.++|+++. ...+++.++|++|++.++ .+|++||+.+....+
T Consensus 32 ~G~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~ 108 (227)
T cd03260 32 IGPSGCGK-STLLRLLNRL-NDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLH 108 (227)
T ss_pred ECCCCCCH-HHHHHHHHhh-cccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhc
Confidence 47899999 9999999999 8 899999999999863 234567899999999888 789999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCccCCC----CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL----LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+++. ++++.+++.+..+. .+||||||||++ ++.+|++|+ ||
T Consensus 109 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 168 (227)
T cd03260 109 G--IKLKEELDERVE----EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168 (227)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112222445677 89999999764332 789999999995 578999988 77
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=164.90 Aligned_cols=116 Identities=20% Similarity=0.134 Sum_probs=94.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.||||||++ .+++ .|+.||+.++....
T Consensus 39 ~G~nGsGK-STLl~~L~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~- 114 (286)
T PRK13646 39 VGQTGSGK-STLIQNINAL-LKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF- 114 (286)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc-
Confidence 47899999 9999999999 89999999999998632 34677899999986 4565 49999998865332
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+..+++. ++++.+|+. +..+. .+||+|||||++ |+.+|+||+ ||
T Consensus 115 --~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEP 172 (286)
T PRK13646 115 --KMNLDEVKNYAH----RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP 172 (286)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 234455566777 999999996 55555 999999999995 678999998 77
No 104
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=2.1e-25 Score=158.82 Aligned_cols=118 Identities=28% Similarity=0.261 Sum_probs=97.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.++...+. .
T Consensus 37 ~G~nGsGK-StLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~ 112 (220)
T TIGR02982 37 TGPSGSGK-TTLLTLIGGL-RSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--N 112 (220)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--C
Confidence 47899999 9999999999 89999999999998632 1346789999999999999999999998754331 1
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 113 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 113 LSYQEARERAR----AMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCHHHHHHHHH----HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23344455677 99999999877666 999999999995 678999988 77
No 105
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=164.01 Aligned_cols=116 Identities=22% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+++.. ...+..++|++|++ .++ .+|+.||+.++...+
T Consensus 39 iG~NGaGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~- 114 (287)
T PRK13641 39 VGHTGSGK-STLMQHFNAL-LKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF- 114 (287)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-
Confidence 47899999 9999999999 89999999999998631 23466899999996 355 579999998765432
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++. +..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 115 --~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEP 172 (287)
T PRK13641 115 --GFSEDEAKEKAL----KWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172 (287)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 233444556677 999999996 55566 999999999995 678999998 87
No 106
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=160.57 Aligned_cols=117 Identities=23% Similarity=0.234 Sum_probs=94.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+...... .. ...
T Consensus 31 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~ 105 (232)
T PRK10771 31 LGPSGAGK-STLLNLIAGF-LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAA 105 (232)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHH
Confidence 48899999 9999999999 89999999999998643 2235679999999999999999999976532110 11 122
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 106 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 106 QREKLH----AIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred HHHHHH----HHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345577 89999999876666 999999999995 678999988 77
No 107
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=3e-25 Score=159.09 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=93.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.... ...+|++|++.+++.+|+.||+.++..... ......+.
T Consensus 17 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~ 91 (230)
T TIGR01184 17 IGHSGCGK-STLLNLISGL-AQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALAVDRVL-PDLSKSER 91 (230)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHHHHhcc-cCCCHHHH
Confidence 47899999 9999999999 8999999999999874321 125899999999999999999987632111 12233444
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 92 ~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 141 (230)
T TIGR01184 92 RAIVE----EHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEP 141 (230)
T ss_pred HHHHH----HHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55677 89999999876666 999999999995 578999998 87
No 108
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=1.1e-25 Score=159.37 Aligned_cols=118 Identities=22% Similarity=0.142 Sum_probs=91.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCC--CCCCHHHHHHHHHhcccC-ccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH--ANLTVEEAMNVATALKLG-KDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~--~~ltv~e~l~~~~~~~~~-~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++. ..++.++|++|++.++ ..+|+.||+.+....+.. .....
T Consensus 31 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (213)
T cd03235 31 VGPNGAGK-STLLKAILGL-LKPTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS 106 (213)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCC
Confidence 47899999 9999999999 8999999999998764 3567899999998764 337999999875432110 00112
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 107 ~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 107 KADKAKVD----EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred HHHHHHHH----HHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 23345677 89999999766666 999999999995 678999998 87
No 109
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.1e-25 Score=157.18 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=94.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+....+ ..
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~--- 104 (204)
T PRK13538 33 EGPNGAGK-TSLLRILAGL-ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP--- 104 (204)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---
Confidence 47899999 9999999999 89999999999988642 345678999999999999999999998875432 11
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+.++ ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 105 ~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 105 GDDEALW----EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred cHHHHHH----HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2234567 89999999776666 999999999995 678999998 77
No 110
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=2.1e-25 Score=158.66 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=91.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .++.++|++|++.+++.+|++||+.++...+ .
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~-- 104 (222)
T cd03224 32 LGRNGAGK-TTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR---R-- 104 (222)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc---C--
Confidence 47899999 9999999999 89999999999988632 22 3567999999999999999999998865432 1
Q ss_pred HHHHHhhhccchHHHHHHh-CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLS-GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~-~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+ ++.+..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 105 ~~~~~~~~~----~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 105 RAKRKARLE----RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred chhHHHHHH----HHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 122334455 777777 46655566 999999999995 578999998 87
No 111
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-25 Score=160.03 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=94.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
|.||||| |||.++|+|+ .+|++|+|.++|.+... ..+++.+-+|||++ .+.|..||.+.+.-+...+ +.
T Consensus 40 GeSGsGK-STL~r~l~Gl-~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~ 114 (252)
T COG1124 40 GESGSGK-STLARLLAGL-EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GL 114 (252)
T ss_pred cCCCCCH-HHHHHHHhcc-cCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---Cc
Confidence 7899999 9999999999 89999999999987643 24567899999996 6899999999998776543 33
Q ss_pred cHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+ +++. ++++.+||. +++++ .+|||||+||++ |+.+|++|+ ||
T Consensus 115 ~~~~--~~i~----~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 115 SKSQ--QRIA----ELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred cHHH--HHHH----HHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 3333 3477 999999996 45666 999999999996 578999988 76
No 112
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=4.7e-25 Score=160.27 Aligned_cols=117 Identities=26% Similarity=0.276 Sum_probs=95.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----------------hhhcceEEEEeeCccCCCCCCHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----------------SQFRKLSCYIMQDNQLHANLTVEEAMN 65 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----------------~~~r~~ig~v~q~~~l~~~ltv~e~l~ 65 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++|++|++.+++.+|++||+.
T Consensus 37 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~ 114 (257)
T PRK10619 37 IGSSGSGK-STFLRCINFL-EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 114 (257)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHH
Confidence 47899999 9999999999 89999999999987631 234678999999999999999999998
Q ss_pred HHHh-cccCccccHHHHHhhhccchHHHHHHhCCCccC-CC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 66 VATA-LKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRG-TL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 66 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++.. .. ........+++. ++++.+++.+.. +. .+||+|||||++ ++.+|++++ ||
T Consensus 115 ~~~~~~~---~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (257)
T PRK10619 115 EAPIQVL---GLSKQEARERAV----KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179 (257)
T ss_pred HHHHHhC---CCCHHHHHHHHH----HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7532 21 223344456677 999999997653 44 999999999995 678999988 77
No 113
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.3e-25 Score=162.67 Aligned_cols=117 Identities=20% Similarity=0.131 Sum_probs=95.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++|++|++. .+...|+.||+.+..... +.
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~ 108 (274)
T PRK13644 34 IGKNGSGK-STLALHLNGL-LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CL 108 (274)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CC
Confidence 48999999 9999999999 89999999999998642 345678999999975 366689999998765432 23
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+.+. ++++.+++.+..+. .+||+||+||++ ++.+|+||+ ||
T Consensus 109 ~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 109 PPIEIRKRVD----RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred CHHHHHHHHH----HHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444556677 89999999877776 999999999995 678999998 77
No 114
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=4.5e-25 Score=158.73 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEe-eCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIM-QDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~-q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|++... ...++.++|++ |.+.+++.+|+.||+.+....+ +...
T Consensus 53 ~G~NGsGK-STLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~ 127 (236)
T cd03267 53 IGPNGAGK-TTTLKILSGL-LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPP 127 (236)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCH
Confidence 47899999 9999999999 89999999999987532 34567899998 5577888999999998765433 2233
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 128 ~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 128 ARFKKRLD----ELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred HHHHHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44455667 88999999876666 999999999994 688999988 87
No 115
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=2.5e-25 Score=178.66 Aligned_cols=120 Identities=22% Similarity=0.291 Sum_probs=102.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|. .++. +|+|.++|.++....+++.+|||+|++.+++.+||+||+.|++.++.+.....
T Consensus 57 ~G~sGsGK-STLL~~L~g~-~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (617)
T TIGR00955 57 MGSSGAGK-TTLMNALAFR-SPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTK 134 (617)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCH
Confidence 37999999 9999999999 6764 89999999998766678889999999999999999999999887765444455
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--C------CCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--L------NLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~------~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..++++ ++++.+|+.+..|+ + .||||||||++ |+.+|+|++ ||
T Consensus 135 ~~~~~~v~----~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 135 KEKRERVD----EVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred HHHHHHHH----HHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 66666788 99999999887777 3 59999999995 688999998 77
No 116
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.9e-25 Score=162.83 Aligned_cols=116 Identities=22% Similarity=0.166 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC-------hhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN-------LSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~-------~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++. ...+++.+|||+|++ .+++ .||.+|+.|+....
T Consensus 38 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~- 113 (288)
T PRK13643 38 IGHTGSGK-STLLQHLNGL-LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF- 113 (288)
T ss_pred ECCCCChH-HHHHHHHhcC-CCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-
Confidence 47899999 9999999999 8999999999999863 134567899999986 5665 59999999875432
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+..+..+++. ++++.+++. ...++ .+||+|||||++ ++.+|+||+ ||
T Consensus 114 --~~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEP 171 (288)
T PRK13643 114 --GIPKEKAEKIAA----EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEP 171 (288)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 234455566777 999999996 45555 999999999996 578999988 77
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=5e-25 Score=159.66 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=95.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----------------hhhcceEEEEeeCccCCCCCCHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----------------SQFRKLSCYIMQDNQLHANLTVEEAMN 65 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----------------~~~r~~ig~v~q~~~l~~~ltv~e~l~ 65 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~ 109 (252)
T TIGR03005 32 IGPSGSGK-STILRILMTL-EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT 109 (252)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHH
Confidence 48899999 9999999999 89999999999987631 234678999999999999999999998
Q ss_pred HHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 66 VATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..... ........+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 110 ~~~~~~~--~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 110 EAPVLVL--GMARAEAEKRAM----ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred HHHHHhc--CCCHHHHHHHHH----HHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7532111 123334445677 89999999876666 999999999995 578999988 77
No 118
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.1e-25 Score=162.79 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc---ceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE---GSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~---G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++ |+|+++|.++.. ...++.+||++|++. +++..|+.||+.+....+
T Consensus 39 ~G~nGaGK-STLl~~l~G~-~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~--- 113 (282)
T PRK13640 39 IGHNGSGK-STISKLINGL-LLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR--- 113 (282)
T ss_pred ECCCCCcH-HHHHHHHhcc-cCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---
Confidence 47899999 9999999999 88887 899999998743 345678999999974 677789999998764332
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 114 ~~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEP 170 (282)
T PRK13640 114 AVPRPEMIKIVR----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDES 170 (282)
T ss_pred CCCHHHHHHHHH----HHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 234455556777 99999999877777 999999999995 688999988 77
No 119
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.9e-25 Score=171.56 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=102.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
|.+|||| |||+++|.|+ +.|++|+|+++|++++. +..+..||+|+|.+.+++.+||.||+.++...........
T Consensus 37 GENGAGK-STLm~iL~G~-~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~ 114 (501)
T COG3845 37 GENGAGK-STLMKILFGL-YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR 114 (501)
T ss_pred ccCCCCH-HHHHHHHhCc-ccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCH
Confidence 6799999 9999999999 99999999999998532 5567899999999999999999999999865322224566
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....++++ ++.+.+|+.-..+. .+||-|+||||. |..+|++|+ ||
T Consensus 115 ~~~~~~i~----~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP 167 (501)
T COG3845 115 RQARARIK----ELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP 167 (501)
T ss_pred HHHHHHHH----HHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC
Confidence 77778888 99999999765666 999999999995 678999988 87
No 120
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.5e-25 Score=157.75 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
.|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+..... .....+
T Consensus 31 ~G~nG~GK-StLl~~l~G~-~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~ 105 (235)
T cd03299 31 LGPTGSGK-SVLLETIAGF-IKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKE 105 (235)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHH
Confidence 48899999 9999999999 89999999999998643 223568999999999999999999998764332 223344
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 106 ~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 106 IERKVL----EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred HHHHHH----HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 455677 89999999877666 999999999995 578999988 77
No 121
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-25 Score=173.59 Aligned_cols=120 Identities=18% Similarity=0.019 Sum_probs=95.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC--CcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG--TEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~--~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+|+|+|+ ++| ++|+|+++|.++.. . ..++.++||+|++.+++.+|++||+.++...+....
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 114 (506)
T PRK13549 37 CGENGAGK-STLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI 114 (506)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC
Confidence 48999999 9999999999 775 89999999998743 1 235679999999999999999999988653221001
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 115 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 115 MDYDAMYLRAQ----KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred cCHHHHHHHHH----HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22334445677 99999999877776 999999999995 678999988 87
No 122
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.4e-25 Score=161.39 Aligned_cols=116 Identities=21% Similarity=0.138 Sum_probs=92.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.|+|++|++ .+++ .|++||+.+.....
T Consensus 39 ~G~nGsGK-STLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~- 114 (280)
T PRK13649 39 IGHTGSGK-STIMQLLNGL-HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF- 114 (280)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-
Confidence 48899999 9999999999 89999999999998632 34567899999996 4555 69999998764332
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+ ..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 115 --~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 172 (280)
T PRK13649 115 --GVSQEEAEALAR----EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172 (280)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 223344455677 8999999963 4455 999999999995 678999988 77
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6e-25 Score=161.94 Aligned_cols=117 Identities=19% Similarity=0.142 Sum_probs=94.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC-----hhhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN-----LSQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++. ...+++.++|++|++. .+...|++||+.+..... +
T Consensus 38 ~G~nGaGK-STLl~~i~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~ 112 (283)
T PRK13636 38 LGGNGAGK-STLFQNLNGI-LKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---K 112 (283)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---C
Confidence 47899999 9999999999 8999999999999863 1345678999999973 334579999998764322 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+..+.+. .+++.+++.+..++ .+||+|||||++ |+.+|++|+ ||
T Consensus 113 ~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 113 LPEDEVRKRVD----NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred CCHHHHHHHHH----HHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34445556677 99999999877777 999999999995 688999988 77
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=7.7e-25 Score=157.71 Aligned_cols=120 Identities=20% Similarity=0.061 Sum_probs=94.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC----
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG---- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~---- 73 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. . ..++.++|++|++.+++.+|+.||+.++......
T Consensus 34 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~ 111 (242)
T TIGR03411 34 IGPNGAGK-TTMMDVITGK-TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFAS 111 (242)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccc
Confidence 47899999 9999999999 89999999999988642 2 2345799999999999999999999886431100
Q ss_pred -ccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 -KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.........+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 112 ~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEP 170 (242)
T TIGR03411 112 LFFRLSAEEKDRIE----EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170 (242)
T ss_pred cccccHHHHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0011233445677 99999999876666 999999999995 678999988 77
No 125
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.4e-25 Score=164.37 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------------------hhhcceEEEEeeCc--cCCCCCCH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------------------SQFRKLSCYIMQDN--QLHANLTV 60 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------------------~~~r~~ig~v~q~~--~l~~~ltv 60 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ..+++.++||+|++ .+++. |+
T Consensus 58 ~G~nGsGK-STLl~~L~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv 134 (320)
T PRK13631 58 IGNSGSGK-STLVTHFNGL-IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TI 134 (320)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hH
Confidence 47899999 9999999999 89999999999987532 24577899999987 46664 99
Q ss_pred HHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 61 EEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 61 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.||+.++.... .....+..+++. ++++.+++. ...++ .+||||||||++ |+.+|+||+ ||
T Consensus 135 ~eni~~~~~~~---~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 135 EKDIMFGPVAL---GVKKSEAKKLAK----FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred HHHHHhhHHhc---CCCHHHHHHHHH----HHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99998865322 234445556677 999999996 45665 999999999995 678999988 77
No 126
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.9e-25 Score=159.39 Aligned_cols=120 Identities=21% Similarity=0.134 Sum_probs=93.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccC----
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLG---- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~---- 73 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .+..++|++|++.+++.+|+.||+.++......
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 114 (255)
T PRK11300 37 IGPNGAGK-TTVFNCLTGF-YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLF 114 (255)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhh
Confidence 47899999 9999999999 89999999999998642 22 345699999999999999999999886421100
Q ss_pred ---cc---c--cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 ---KD---L--TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ---~~---~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. . ...+..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 180 (255)
T PRK11300 115 SGLLKTPAFRRAESEALDRAA----TWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180 (255)
T ss_pred hhhccccccccchhHHHHHHH----HHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 0 1112234566 88999999876666 999999999995 678999998 77
No 127
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.3e-25 Score=164.17 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++.. ..+++.|+||+|++ .+++.+|+.+++......+.
T Consensus 47 vG~sGsGK-STLl~~l~gl-~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~- 123 (327)
T PRK11308 47 VGESGCGK-STLARLLTMI-ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT- 123 (327)
T ss_pred ECCCCCcH-HHHHHHHHcC-CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc-
Confidence 37899999 9999999999 89999999999998632 23567899999997 68999999999977654321
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+||.+ ..++ .+|||||+||++ |+.+|+||+ ||
T Consensus 124 -~~~~~~~~~~~~----~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEP 181 (327)
T PRK11308 124 -SLSAAERREKAL----AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEP 181 (327)
T ss_pred -CCCHHHHHHHHH----HHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 234445566778 9999999963 4555 999999999995 688999998 77
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.2e-25 Score=160.36 Aligned_cols=117 Identities=18% Similarity=0.086 Sum_probs=95.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|+++.. ..+++.++|++|++. +++..|+.+|+.+..... ...
T Consensus 41 ~G~nGsGK-STLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~ 115 (269)
T PRK13648 41 VGHNGSGK-STIAKLMIGI-EKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVP 115 (269)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCC
Confidence 48999999 9999999999 89999999999998642 455678999999974 777889999998765322 223
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 116 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 116 YDEMHRRVS----EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred HHHHHHHHH----HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344445677 89999999877766 999999999995 678999988 77
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=8.8e-25 Score=155.88 Aligned_cols=118 Identities=24% Similarity=0.172 Sum_probs=90.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++ .+++.+|+++|+.+......
T Consensus 37 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~- 113 (228)
T cd03257 37 VGESGSGK-STLARAILGL-LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG- 113 (228)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhcc-
Confidence 47899999 9999999999 89999999999998642 23567899999998 57778999999987654321
Q ss_pred ccccHHHH-HhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAAR-KDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~-~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....... ...+. ++++.+++. ...+. .+||+|||||++ ++.+|++|+ ||
T Consensus 114 -~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 172 (228)
T cd03257 114 -KLSKKEARKEAVL----LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP 172 (228)
T ss_pred -CCcHHHHHHHHHH----HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1111222 22235 788899995 45555 999999999995 678999988 87
No 130
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=157.59 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=93.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+++|+|+ ++| ++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.++......
T Consensus 35 ~G~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 112 (250)
T PRK14247 35 MGPSGSGK-STLLRVFNRL-IELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL 112 (250)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc
Confidence 47899999 9999999999 763 79999999998632 34567899999999999999999999886533210
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 113 -~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14247 113 -VKSKKELQERVR----WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173 (250)
T ss_pred -cCCHHHHHHHHH----HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112334445677 8999999853 3444 999999999995 578999998 77
No 131
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=156.31 Aligned_cols=117 Identities=25% Similarity=0.221 Sum_probs=96.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+|+.+|+.+....+ +.....
T Consensus 32 ~G~nGsGK-STLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~ 106 (232)
T cd03300 32 LGPSGCGK-TTLLRLIAGF-ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAE 106 (232)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence 37899999 9999999999 89999999999998743 223568999999999999999999998765433 222333
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. .+++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 107 ~~~~~~----~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 107 IKERVA----EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred HHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 445667 89999999877776 999999999995 688999988 77
No 132
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=6e-25 Score=172.74 Aligned_cols=120 Identities=16% Similarity=0.008 Sum_probs=96.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-ccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~ 76 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .++.++|++|++.+++.+||+||+.++...+.. ...
T Consensus 36 ~G~NGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 113 (501)
T PRK10762 36 VGENGAGK-STMMKVLTGI-YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRI 113 (501)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCcc
Confidence 48999999 9999999999 89999999999998642 12 346799999999999999999999886432210 012
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+.++++. ++++.+++.+..++ .+||||||||++ |+.+|++|+ ||
T Consensus 114 ~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 168 (501)
T PRK10762 114 DWKKMYAEAD----KLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168 (501)
T ss_pred CHHHHHHHHH----HHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2333445677 99999999877776 999999999995 678999998 87
No 133
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=6.9e-25 Score=159.67 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=93.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++.. ..+++.++|++|++.+++.+|++||+.+..... ....
T Consensus 34 ~G~nGsGK-STLl~~i~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 108 (258)
T PRK13548 34 LGPNGAGK-STLLRALSGE-LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSR 108 (258)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCc
Confidence 47899999 9999999999 89999999999987632 344567999999999888899999998764321 1122
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----Hh------cCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NV------LSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~------~~P~vl~--~~ 127 (127)
....+.+. ++++.+++.+..+. .+||+|||||++ ++ .+|++|+ ||
T Consensus 109 ~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEP 167 (258)
T PRK13548 109 AEDDALVA----AALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP 167 (258)
T ss_pred HHHHHHHH----HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCC
Confidence 23345567 89999999876666 999999999996 45 4899988 77
No 134
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=7.9e-25 Score=157.51 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=96.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+|+.+|+.||+.+....+ ......
T Consensus 32 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~ 106 (237)
T TIGR00968 32 LGPSGSGK-STLLRIIAGL-EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAK 106 (237)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHH
Confidence 47899999 9999999999 89999999999998643 234568999999999999999999998765432 122333
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 107 ~~~~~~----~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 107 IKARVE----ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred HHHHHH----HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 345667 89999999876666 999999999995 678999988 77
No 135
>PLN03211 ABC transporter G-25; Provisional
Probab=99.92 E-value=7.5e-25 Score=176.84 Aligned_cols=119 Identities=26% Similarity=0.254 Sum_probs=97.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC--cceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT--EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~--~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ .+|+ +|+|.++|+++.. ..++.++||+|++.+++.+||+||+.+.+.++.+.....+
T Consensus 100 ~GpnGaGK-STLL~iLaG~-~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~ 176 (659)
T PLN03211 100 LGPSGSGK-STLLNALAGR-IQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQ 176 (659)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHH
Confidence 47999999 9999999999 7774 9999999998753 3456799999999999999999999987765433233444
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..++++ ++++.+||.+..++ .+||||||||++ |+.+|+||+ ||
T Consensus 177 ~~~~~v~----~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 177 EKILVAE----SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHH----HHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 5556677 99999999776543 789999999995 688999998 87
No 136
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=6.8e-25 Score=155.71 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=93.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
.|.+|||| |||+++|+|+ ++|++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+....+ +. ..
T Consensus 43 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~ 114 (214)
T PRK13543 43 QGDNGAGK-TTLLRVLAGL-LHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RA 114 (214)
T ss_pred EcCCCCCH-HHHHHHHhCC-CCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cH
Confidence 47899999 9999999999 89999999999998754334567999999999999999999998765432 11 12
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 115 ~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 115 KQMPG----SALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred HHHHH----HHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33456 88899999876666 999999999996 578999988 77
No 137
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=6.2e-25 Score=160.03 Aligned_cols=109 Identities=18% Similarity=0.137 Sum_probs=91.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++. .+++.++|++|++.+++.+|++||+.+... . ..
T Consensus 44 ~G~NGsGK-STLlk~l~Gl-~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~ 110 (257)
T PRK11247 44 VGRSGCGK-STLLRLLAGL-ETPSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QW 110 (257)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hH
Confidence 47899999 9999999999 8999999999998753 346789999999999999999999987521 1 12
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||||||||++ ++.+|++++ ||
T Consensus 111 ~~~~~----~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 111 RDAAL----QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred HHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566 89999999876666 999999999995 678999988 87
No 138
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=171.35 Aligned_cols=120 Identities=19% Similarity=0.064 Sum_probs=96.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+++.. ..+++.++|++|++.+++.+||.+|+.++..........
T Consensus 36 ~G~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 113 (501)
T PRK11288 36 MGENGAGK-STLLKILSGN-YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVN 113 (501)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCC
Confidence 48899999 9999999999 89999999999998642 234678999999999999999999998854211100122
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+++. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 114 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 114 RRLLNYEAR----EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred HHHHHHHHH----HHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 344456677 99999999766666 999999999995 578999998 87
No 139
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=159.87 Aligned_cols=117 Identities=22% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+++.. ..+++.++|++|++. .+...|+.+|+.+..... ...
T Consensus 36 ~G~NGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~ 110 (277)
T PRK13652 36 IGPNGAGK-STLFRHFNGI-LKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLD 110 (277)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCC
Confidence 48899999 9999999999 89999999999998642 345678999999974 334579999998765322 233
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 111 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 111 EETVAHRVS----SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred HHHHHHHHH----HHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444455677 99999999877666 999999999995 688999988 77
No 140
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=160.04 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=95.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++. +++..|+.||+.++.... ...
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~ 113 (277)
T PRK13642 39 IGQNGSGK-STTARLIDGL-FEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIP 113 (277)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCC
Confidence 47899999 9999999999 89999999999998642 345678999999974 677789999998764322 223
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+++. .+++.+++.+..++ .+||+||+||++ ++.+|++|+ ||
T Consensus 114 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 114 REEMIKRVD----EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred HHHHHHHHH----HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444455677 89999999877666 999999999995 678999988 77
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=160.22 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=94.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.+||+||++. .+...|+.+|+.++.... +.
T Consensus 42 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~ 116 (280)
T PRK13633 42 LGRNGSGK-STIAKHMNAL-LIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GI 116 (280)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CC
Confidence 47899999 9999999999 89999999999998742 345678999999974 233468999998865432 23
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+++. ++++.+|+.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 117 ~~~~~~~~~~----~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 117 PPEEIRERVD----ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred CHHHHHHHHH----HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445556677 99999999877776 999999999995 688999988 77
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=1.7e-24 Score=158.08 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=93.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. . .+++.++|++|++ .+++.+|+.||+.+......
T Consensus 43 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~- 119 (265)
T TIGR02769 43 LGRSGCGK-STLARLLLGL-EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT- 119 (265)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc-
Confidence 47899999 9999999999 89999999999998642 1 2456799999996 46788999999976543211
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++. ...+. .+||+|||||++ ++.+|++|+ ||
T Consensus 120 -~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEP 177 (265)
T TIGR02769 120 -SLDESEQKARIA----ELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177 (265)
T ss_pred -CCCHHHHHHHHH----HHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 122334445677 899999996 55555 999999999995 578999988 77
No 143
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.3e-24 Score=159.14 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=92.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCccC-CCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQL-HANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l-~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++|++|++.+ +...++.+|+.+..... +
T Consensus 33 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~ 107 (271)
T PRK13638 33 VGANGCGK-STLFMNLSGL-LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---G 107 (271)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---C
Confidence 47899999 9999999999 89999999999998631 2346789999999753 34458999998764332 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 108 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 108 VPEAEITRRVD----EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred CCHHHHHHHHH----HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 23344445677 89999999876666 999999999995 678999988 87
No 144
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=1.2e-24 Score=152.71 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=92.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+.+|+.+..... . . .
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~-~-~ 104 (198)
T TIGR01189 32 TGPNGIGK-TTLLRILAGL-LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G-G-A 104 (198)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C-C-c
Confidence 47899999 9999999999 89999999999998632 334578999999999999999999998765332 1 1 1
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 105 --~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 105 --QRTIE----DALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred --HHHHH----HHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23466 88999999877666 999999999995 578999988 77
No 145
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.1e-25 Score=159.54 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-cccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++|++|++.+++.+|+.+|+.+....... ....
T Consensus 43 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 120 (265)
T PRK10575 43 IGHNGSGK-STLLKMLGRH-QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRF 120 (265)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCC
Confidence 47899999 9999999999 8999999999998863 244567899999998899999999999875321100 0011
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 121 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 174 (265)
T PRK10575 121 GAADREKVE----EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 (265)
T ss_pred CHHHHHHHH----HHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 122344567 89999999776666 999999999995 678999998 77
No 146
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=170.59 Aligned_cols=120 Identities=15% Similarity=0.008 Sum_probs=95.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+||+||+.++..........
T Consensus 30 iG~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (491)
T PRK10982 30 MGENGAGK-STLLKCLFGI-YQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVD 107 (491)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccC
Confidence 47899999 9999999999 89999999999998642 234567999999999999999999998753211000012
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+.+. ++++.+++....++ .+|||||||||+ ++.+|+||+ ||
T Consensus 108 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 108 QDKMYRDTK----AIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred HHHHHHHHH----HHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 333445677 89999999876666 999999999995 678999998 87
No 147
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1e-24 Score=190.17 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=100.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++.. ..+|+.+|||+|++.+++.+||+||+.++..++ +....
T Consensus 962 LG~NGAGK-STLLkiLaGL-l~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~ 1036 (2272)
T TIGR01257 962 LGHNGAGK-TTTLSILTGL-LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWE 1036 (2272)
T ss_pred ECCCCChH-HHHHHHHhcC-CCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHH
Confidence 47899999 9999999999 89999999999999743 446778999999999999999999999987654 33444
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+++++ ++++.++|.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 1037 ~~~~~v~----~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP 1088 (2272)
T TIGR01257 1037 EAQLEME----AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 (2272)
T ss_pred HHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 5556777 99999999887777 999999999995 688999998 87
No 148
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=156.64 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=92.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ ++| ++|+|+++|+++. ...+++.++|++|++.+++.+|+.||+.++...+
T Consensus 36 ~G~nGsGK-STLl~~l~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 113 (253)
T PRK14267 36 MGPSGCGK-STLLRTFNRL-LELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLN 113 (253)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhc
Confidence 48899999 9999999999 776 4999999999864 1345678999999999999999999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 114 ~~-~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 114 GL-VKSKKELDERVE----WALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred Cc-cCCHHHHHHHHH----HHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 10 012333445567 8889988843 2344 999999999995 578999988 77
No 149
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=1.9e-24 Score=154.83 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=92.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC----CcceEEECCEecChhhh-cceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG----TEGSITINGHERNLSQF-RKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~----~~G~i~i~G~~~~~~~~-r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++| ++|+|+++|+++..... ++.++|++|++. +++.+|+.+|+.+.....
T Consensus 18 ~G~nGsGK-STLl~~l~Gl-~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~--- 92 (230)
T TIGR02770 18 VGESGSGK-SLTCLAILGL-LPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL--- 92 (230)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc---
Confidence 48899999 9999999999 888 89999999998754333 357999999974 667789999987654322
Q ss_pred cccHHHHHhhhccchHHHHHHhCCC---ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHL---PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++. +..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 93 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 93 GKLSKQARALIL----EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred CccHHHHHHHHH----HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112233445677 999999997 34455 999999999995 578999988 87
No 150
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=157.06 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+| ++|+|.++|+++.. ..+++.++|++|++.+++ +|++||+.+....+
T Consensus 44 ~G~nGsGK-STLl~~i~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~ 120 (258)
T PRK14268 44 IGPSGCGK-STFIRCLNRM-NDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH 120 (258)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc
Confidence 47899999 9999999999 664 89999999988632 234678999999998888 89999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.......+.+. ++++.+++. +..+. .+||+||+||++ ++.+|+|++ ||
T Consensus 121 ---~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 181 (258)
T PRK14268 121 ---GANKKDLDGVVE----NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181 (258)
T ss_pred ---CCCHHHHHHHHH----HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 223333445567 889999884 23344 899999999995 678999998 77
No 151
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-24 Score=158.37 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=93.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ..+++.|+|++|++. .+...|+.||+.+..... .
T Consensus 34 ~G~nGsGK-STLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~ 108 (275)
T PRK13639 34 LGPNGAGK-STLFLHFNGI-LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---G 108 (275)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---C
Confidence 47899999 9999999999 89999999999998631 235678999999963 333469999998764321 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 109 ~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 109 LSKEEVEKRVK----EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred CCHHHHHHHHH----HHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33444456677 99999999877777 999999999995 688999988 77
No 152
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=156.66 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=92.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ..| ++|+|.++|+++. ...+++.++|++|++.+++.+|+.||+.++...+
T Consensus 36 ~G~nGsGK-STLl~~laGl-~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 113 (258)
T PRK14241 36 IGPSGCGK-STVLRTLNRM-HEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN 113 (258)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhc
Confidence 47899999 9999999999 763 7999999998863 2345678999999999999999999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. +..+. .+||+|||||++ ++.+|++++ ||
T Consensus 114 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 114 G--VRNKKDLDELVE----KSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 112334455677 889999884 23344 999999999995 578999988 77
No 153
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=1.4e-24 Score=152.73 Aligned_cols=111 Identities=17% Similarity=0.093 Sum_probs=92.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.++|++|++.+++.+|++||+.+.... .
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~--- 101 (201)
T cd03231 32 TGPNGSGK-TTLLRILAGL-SPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H--- 101 (201)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c---
Confidence 47899999 9999999999 89999999999988632 34567899999999999999999999875311 1
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 102 -~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 102 -SDEQVE----EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred -cHHHHH----HHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 234566 88999999876666 999999999995 678999988 77
No 154
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-24 Score=159.51 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=91.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--------hhhhcceEEEEeeCcc--CCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--------LSQFRKLSCYIMQDNQ--LHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--------~~~~r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++|++|++. +++ .|+.||+.+.....
T Consensus 43 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~ 119 (289)
T PRK13645 43 IGTTGSGK-STMIQLTNGL-IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL 119 (289)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc
Confidence 47899999 9999999999 8999999999998863 1345678999999973 444 59999998764322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++. +..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 120 ---~~~~~~~~~~~~----~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEP 177 (289)
T PRK13645 120 ---GENKQEAYKKVP----ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177 (289)
T ss_pred ---CCCHHHHHHHHH----HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 223344445677 899999994 55666 999999999995 678999998 87
No 155
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=158.59 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=94.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-cccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..++..++|++|++.+++.+|+.+|+.++...... ....
T Consensus 39 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 116 (265)
T PRK10253 39 IGPNGCGK-STLLRTLSRL-MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW 116 (265)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCC
Confidence 47899999 9999999999 89999999999998632 34456799999999999999999999875211100 0001
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 117 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 170 (265)
T PRK10253 117 RKEDEEAVT----KAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170 (265)
T ss_pred CHHHHHHHH----HHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 122334567 89999999876666 999999999995 688999988 77
No 156
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=9.8e-25 Score=154.19 Aligned_cols=113 Identities=21% Similarity=0.165 Sum_probs=92.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|.++....++..++|++|.+.+++.+|+.+|+.+....+ ...
T Consensus 34 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~---- 104 (207)
T PRK13539 34 TGPNGSGK-TTLLRLIAGL-LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE---- 104 (207)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----
Confidence 47899999 9999999999 89999999999988643236778999999988889999999998765432 111
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 105 ~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 105 ELDIA----AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred HHHHH----HHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12466 89999999766555 999999999995 678999988 77
No 157
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.2e-24 Score=189.86 Aligned_cols=117 Identities=17% Similarity=0.060 Sum_probs=100.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+|+|+|+ ..|++|+|+++|+++.. ...++.|||+||++.+++.+|++|++.+.+.++ +.+..
T Consensus 1971 LG~NGAGK-TTLlkmL~Gl-l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~ 2045 (2272)
T TIGR01257 1971 LGVNGAGK-TTTFKMLTGD-TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAE 2045 (2272)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHH
Confidence 47899999 9999999999 89999999999999742 345678999999999999999999999877654 34445
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.++.++ ++++.++|.+..++ ++||||||||++ |+++|+||+ ||
T Consensus 2046 ~~~~~v~----~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257 2046 EIEKVAN----WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred HHHHHHH----HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 5566777 99999999888777 999999999994 688999988 87
No 158
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.8e-24 Score=152.05 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=92.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
.|.+|||| |||+++|+|+ .+|++|+|+++|+++.. ..+++.++|++|++.+++.+|+.+|+.+..... ..
T Consensus 33 ~G~nGsGK-STLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~ 104 (200)
T PRK13540 33 KGSNGAGK-TTLLKLIAGL-LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG 104 (200)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc
Confidence 48899999 9999999999 89999999999988642 345678999999999999999999998764211 11
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 105 --~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 105 --AVGIT----ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred --hHHHH----HHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23566 88999999766666 899999999995 688999988 77
No 159
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.7e-26 Score=154.66 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=94.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|+||||| |||+|+++.+ ++|++|+++|.|++++ +..+|.+++||.|.+.+|+. ||++|+.|...++- +
T Consensus 35 tGPSG~GK-Stllk~va~L-isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~-----r 106 (223)
T COG4619 35 TGPSGCGK-STLLKIVASL-ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRN-----R 106 (223)
T ss_pred eCCCCccH-HHHHHHHHhc-cCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhc-----c
Confidence 48999999 9999999999 8999999999999964 47789999999999999999 99999999876542 1
Q ss_pred HHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHHh----cCCceee
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFNV----LSPLATY 125 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l~----~~P~vl~ 125 (127)
......+. ++++.+++.+. +++ .+|||||+||++|+ .-|+||+
T Consensus 107 r~dr~aa~----~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL 156 (223)
T COG4619 107 RPDRAAAL----DLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILL 156 (223)
T ss_pred CCChHHHH----HHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEE
Confidence 11334566 89999999654 444 99999999999865 4788877
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=169.98 Aligned_cols=120 Identities=21% Similarity=0.076 Sum_probs=95.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhccc-Ccc-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKL-GKD- 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~- 75 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|+++.. . ..++.++|++|++.+++.+||.||+.++..... ..+
T Consensus 37 iG~nGsGK-STLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (510)
T PRK09700 37 LGENGAGK-STLMKVLSGI-HEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGV 114 (510)
T ss_pred ECCCCCCH-HHHHHHHcCC-cCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccc
Confidence 48999999 9999999999 89999999999998643 1 234579999999999999999999987532110 001
Q ss_pred --ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 --LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 --~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 115 ~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP 172 (510)
T PRK09700 115 NIIDWREMRVRAA----MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172 (510)
T ss_pred cccCHHHHHHHHH----HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12234455677 99999999877777 999999999995 678999998 87
No 161
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.9e-24 Score=156.97 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc-Ccccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL-GKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++. ....++.++|++|++.+++.+|+.||+.++..... .....
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~ 111 (255)
T PRK11231 34 IGPNGCGK-STLLKCFARL-LTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL 111 (255)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCC
Confidence 47899999 9999999999 8999999999998853 23456679999999999999999999987531100 00111
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 112 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 112 SAEDNARVN----QAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred CHHHHHHHH----HHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 123344567 88999999876666 999999999995 688999988 77
No 162
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=2.7e-24 Score=157.24 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=93.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++. +++.+|+.+++.+....+. ..
T Consensus 45 ~G~NGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~ 120 (267)
T PRK15112 45 IGENGSGK-STLAKMLAGM-IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DL 120 (267)
T ss_pred EcCCCCCH-HHHHHHHhCC-CCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CC
Confidence 47899999 9999999999 89999999999998642 233467999999974 6788899999987654321 12
Q ss_pred cHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+.+. ++++.+++. ...+. .+||+|||||++ ++.+|+||+ ||
T Consensus 121 ~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 121 EPEQREKQII----ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred CHHHHHHHHH----HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2334445677 999999994 44454 899999999995 578999988 87
No 163
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=1.7e-24 Score=172.70 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ + |++|+|.++|.++. ...+|+.|+||+|++.+|+. |++||+.++.. ..+.
T Consensus 382 vG~SGsGK-STL~~lL~g~-~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~ 452 (588)
T PRK11174 382 VGPSGAGK-TSLLNALLGF-L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASD 452 (588)
T ss_pred ECCCCCCH-HHHHHHHhcC-C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCH
Confidence 37899999 9999999999 8 99999999999863 46788999999999999998 99999988631 2334
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.+ .+++++.+ |++..... .+||||||||++ ++.+|+||+ ||
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~ 512 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEP 512 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4433332211 23455555 44433322 789999999996 578999988 76
No 164
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.92 E-value=1.4e-24 Score=171.36 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=86.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++. ...+|+.++||||++.+|+. |++||+.++.. ..+.+
T Consensus 367 vG~SGsGK-STLl~lL~g~-~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~e 438 (529)
T TIGR02868 367 LGPSGSGK-STLLMLLTGL-LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATDE 438 (529)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCHH
Confidence 48999999 9999999999 9999999999999854 46678899999999999998 99999988631 12233
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.+ .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~ 497 (529)
T TIGR02868 439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 497 (529)
T ss_pred HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 322222211 12333332 22222211 779999999996 578999988 76
No 165
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.1e-24 Score=172.54 Aligned_cols=118 Identities=20% Similarity=0.174 Sum_probs=94.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++.. ..+++.|+||+|++ .+++.+||.+|+.+....+.
T Consensus 356 vG~nGsGK-STLlk~i~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~- 432 (623)
T PRK10261 356 VGESGSGK-STTGRALLRL-VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG- 432 (623)
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC-
Confidence 47899999 9999999999 89999999999998632 22456899999997 58999999999987654321
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.++|. +..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 433 -~~~~~~~~~~~~----~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEP 490 (623)
T PRK10261 433 -LLPGKAAAARVA----WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEA 490 (623)
T ss_pred -CCCHHHHHHHHH----HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 112334456677 999999995 45565 999999999995 678999998 87
No 166
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=1.6e-24 Score=154.94 Aligned_cols=114 Identities=22% Similarity=0.153 Sum_probs=89.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. . ..++.++|++|++.+++.+|+.+|+.++...+ ...
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~ 106 (230)
T TIGR03410 32 LGRNGVGK-TTLLKTLMGL-LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR 106 (230)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc
Confidence 47899999 9999999999 89999999999988642 2 23567999999999999999999998765432 111
Q ss_pred HHHHHhhhccchHHHHHHhC-CCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSG-HLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~-l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. ++++.++ +.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 107 ---~~~~~~----~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 107 ---SRKIPD----EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred ---hHHHHH----HHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 112345 6777776 4554555 999999999995 678999988 77
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=155.86 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ +. |++|+|.++|+++.. ..+++.++|++|++.+++ .|+++|+.+.....
T Consensus 45 ~G~nGsGK-STLl~~l~Gl-~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~ 121 (260)
T PRK10744 45 IGPSGCGK-STLLRTFNRM-YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF 121 (260)
T ss_pred ECCCCCCH-HHHHHHHhcc-cccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhc
Confidence 47899999 9999999999 65 589999999988631 345678999999998888 79999998765322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+++. ++++.+++. +..+. .+||+||+||++ ++.+|+||+ ||
T Consensus 122 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 183 (260)
T PRK10744 122 E--KLSRAEMDERVE----WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183 (260)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 1 123344445677 899999874 23344 899999999995 678999998 77
No 168
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=154.96 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=90.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++| ++|+|+++|+++.. ...++.++|++|++.+++ +|++||+.++....
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~ 115 (254)
T PRK14273 39 IGPSGCGK-STFLRTLNRM-NDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH 115 (254)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc
Confidence 47899999 9999999999 776 59999999988631 345678999999988885 89999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. +..++ .+||||||||++ ++.+|++|+ ||
T Consensus 116 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 177 (254)
T PRK14273 116 G--TKDKKKLDEIVE----QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177 (254)
T ss_pred C--CCCHHHHHHHHH----HHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 112233445667 888888873 23344 999999999995 678999988 77
No 169
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=3.2e-24 Score=152.92 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=92.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.... ++.++|++|++.+++.+|++||+.++.... ...
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~---- 101 (223)
T TIGR03740 32 LGPNGAGK-STLLKMITGI-LRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP---- 101 (223)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----
Confidence 48899999 9999999999 8999999999999865332 357999999999999999999998765432 111
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+. ++++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 102 ~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP 151 (223)
T TIGR03740 102 DSRID----EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151 (223)
T ss_pred HHHHH----HHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 23466 88999999877766 999999999995 678999988 77
No 170
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=2.8e-24 Score=169.34 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=93.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. .. .+..++|++|++.+++.+||.||+.+....
T Consensus 43 iG~NGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~------- 113 (510)
T PRK15439 43 LGGNGAGK-STLMKIIAGI-VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK------- 113 (510)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------
Confidence 48899999 9999999999 89999999999998642 22 235699999999999999999999875321
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 114 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 114 RQASMQKMK----QLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred chHHHHHHH----HHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 123345677 89999999877776 999999999995 678999998 87
No 171
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=5.3e-24 Score=151.77 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=91.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEEC--CE--ecC---hh---hh-cceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITIN--GH--ERN---LS---QF-RKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~--G~--~~~---~~---~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++ |. ++. .. .. ++.++|++|++.+++.+|+.||+.+....
T Consensus 40 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 117 (224)
T TIGR02324 40 SGPSGAGK-STLLKSLYAN-YLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE 117 (224)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH
Confidence 47899999 9999999999 89999999998 43 332 11 12 35799999999999999999999875432
Q ss_pred ccCccccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 71 KLGKDLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. +.......+.+. ++++.+++.+. .+. .+||+|||||++ ++.+|++++ ||
T Consensus 118 ~---~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 118 R---GVPREAARARAR----ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred c---CCCHHHHHHHHH----HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 223333445677 89999999753 344 999999999995 578999988 77
No 172
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=154.45 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=90.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|.++|+++.. ..+++.++|++|++.+|+. |+.||+.++...+
T Consensus 38 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 114 (253)
T PRK14242 38 IGPSGCGK-STFLRCLNRM-NDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVN 114 (253)
T ss_pred ECCCCCCH-HHHHHHHHhh-cccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHc
Confidence 47899999 9999999998 54 589999999998642 2456789999999988884 9999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 115 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEP 176 (253)
T PRK14242 115 G--VKDKAYLAERVE----RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176 (253)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112233445677 8889998853 2344 899999999995 578999988 77
No 173
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=154.23 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCC---CCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS---GTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~---~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ +. |++|+|.++|+++.. ..+++.++|++|++.+|+ .|++||+.++...+.. .
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~ 109 (246)
T PRK14269 34 IGASGCGK-STFLRCFNRM-NDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-I 109 (246)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-c
Confidence 47899999 9999999999 64 699999999998642 345678999999999987 5999999886543210 0
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+++. ++++.+++.+ ..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 110 ~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 169 (246)
T PRK14269 110 KNKDEEEALVV----DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEP 169 (246)
T ss_pred cChHHHHHHHH----HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01233445567 8999999953 2344 899999999995 678999988 77
No 174
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=1.8e-24 Score=175.08 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+|+|+|+ +.|++|+|++||.++ +...+|++||||+|++.+|.. |++||+.++.. ..+.+
T Consensus 506 G~SGsGK-STL~KLL~gl-y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~~~~e 577 (709)
T COG2274 506 GRSGSGK-STLLKLLLGL-YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----EATDE 577 (709)
T ss_pred CCCCCCH-HHHHHHHhcC-CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----CCCHH
Confidence 7899999 9999999999 999999999999995 457889999999999999998 99999988643 22333
Q ss_pred HHHhhhccc-hHHHHHHhCC--CccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLSGH--LPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~~l--~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.+..+ +|+.+..+.+ +..... .+||||||||++ ++.+|+||+ ||
T Consensus 578 ~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEa 636 (709)
T COG2274 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEA 636 (709)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 333332222 4466665533 322222 999999999996 578999988 65
No 175
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=3.6e-24 Score=155.59 Aligned_cols=120 Identities=17% Similarity=0.079 Sum_probs=93.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-cccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~ 77 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|.++.. ...++.++|++|++.+++.+|+.||+.++...... ....
T Consensus 33 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 110 (256)
T TIGR03873 33 LGPNGSGK-STLLRLLAGA-LRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGD 110 (256)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCC
Confidence 48899999 9999999999 89999999999988642 34456799999998888889999999875311000 0111
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 111 ~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 111 SPHDAAVVD----RALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CHHHHHHHH----HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 122334567 89999999877666 999999999995 578999988 77
No 176
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=154.57 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=90.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. . ..++.++|++|++.+++.+|+.+|+.+..... .
T Consensus 37 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~ 109 (237)
T PRK11614 37 IGANGAGK-TTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----E 109 (237)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----C
Confidence 47899999 9999999999 89999999999998643 2 24667999999999999999999998754221 1
Q ss_pred HHHHHhhhccchHHHHHHh-CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLS-GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~-~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++++.+ ++.+..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 110 ~~~~~~~~~----~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 110 RDQFQERIK----WVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred hhHHHHHHH----HHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 122233455 677777 46554444 999999999995 578999988 77
No 177
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.2e-24 Score=155.33 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=91.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+| ++|+|+++|+++.. ..+++.++|++|++.+++. |+.||+.+....+
T Consensus 51 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 127 (267)
T PRK14235 51 IGPSGCGK-STFLRCLNRM-NDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIH 127 (267)
T ss_pred ECCCCCCH-HHHHHHHHhh-cccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhc
Confidence 47899999 9999999999 764 89999999998632 3456789999999988885 9999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 128 ~~-~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 128 GL-ARSKAELDEIVE----TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred cc-ccchHHHHHHHH----HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 10 012233345667 8999999953 2344 999999999995 678999998 77
No 178
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=3.9e-24 Score=155.84 Aligned_cols=120 Identities=20% Similarity=0.120 Sum_probs=92.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecCh--------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNL--------SQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~--------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|++|||| |||+++|+|+ ++|+ +|+|+++|.++.. ..+++.++|++|++.+++.+|+.||+.+....
T Consensus 36 ~G~nGsGK-STLl~~i~G~-~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 113 (262)
T PRK09984 36 LGPSGSGK-STLLRHLSGL-ITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALG 113 (262)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcc
Confidence 47899999 9999999999 7875 5999999988632 23456799999999999999999999875321
Q ss_pred ccCc-----cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 71 KLGK-----DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 71 ~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+. ........+++. ++++.+++.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (262)
T PRK09984 114 STPFWRTCFSWFTREQKQRAL----QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179 (262)
T ss_pred cccchhhhcccccHHHHHHHH----HHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCc
Confidence 0000 011123345677 99999999766666 999999999995 578999988 77
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=4.3e-24 Score=152.62 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|.++. ....++.++|++|++.+++. |+.||+.+....+ ...
T Consensus 39 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~---~~~- 111 (225)
T PRK10247 39 TGPSGCGK-STLLKIVASL-ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR---NQQ- 111 (225)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhc---CCC-
Confidence 48999999 9999999999 8999999999998753 23456789999999988875 9999998754332 111
Q ss_pred HHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+.+. ++++.+++. ...+. .+||+||+||++ ++.+|++++ ||
T Consensus 112 -~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 112 -PDPAIFL----DDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred -hHHHHHH----HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1234566 899999995 34555 999999999995 688999988 77
No 180
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=8.8e-24 Score=152.09 Aligned_cols=120 Identities=18% Similarity=0.007 Sum_probs=91.4
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK- 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~- 74 (127)
-|++|||| |||+++|+|+ . +|++|+|.++|+++.. .. .+..++|++|++.+++.+|+.+|+.+........
T Consensus 32 ~G~nGsGK-STLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~ 109 (243)
T TIGR01978 32 MGPNGSGK-STLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSAR 109 (243)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhccc
Confidence 48899999 9999999999 5 6899999999998642 22 2345999999999999999999998754321100
Q ss_pred ---cccHHHHHhhhccchHHHHHHhCCC-ccCCC--C-CCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 ---DLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--L-NLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~-~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++. ...++ . +||+|||||++ ++.+|++++ ||
T Consensus 110 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 110 GEEPLDLLDFLKLLK----AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred ccccccHHHHHHHHH----HHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 012223345567 899999997 44555 4 59999999995 678999988 87
No 181
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7.4e-24 Score=158.99 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=92.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC----CCcceEEECCEecCh---hhh----cceEEEEeeCc--cCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS----GTEGSITINGHERNL---SQF----RKLSCYIMQDN--QLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~----~~~G~i~i~G~~~~~---~~~----r~~ig~v~q~~--~l~~~ltv~e~l~~~~ 68 (127)
-|.+|||| |||+++|+|+ ++ +++|+|.++|+++.. ... ++.|+||||++ .++|.+|+.+++....
T Consensus 39 vG~sGsGK-STL~~~l~Gl-l~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l 116 (326)
T PRK11022 39 VGESGSGK-SVSSLAIMGL-IDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAI 116 (326)
T ss_pred ECCCCChH-HHHHHHHHcC-CCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 37899999 9999999999 66 489999999998632 222 24699999997 5899999999887655
Q ss_pred hcccCccccHHHHHhhhccchHHHHHHhCCCc---cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 69 ALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP---RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.... +....+..+++. ++++.++|.+ ..+. .+|||||+|||+ |+.+|+||+ ||
T Consensus 117 ~~~~--~~~~~~~~~~~~----~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 117 KVHQ--GGNKKTRRQRAI----DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred HHhc--CCCHHHHHHHHH----HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4321 234455566788 9999999964 3344 999999999995 688999998 77
No 182
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=154.16 Aligned_cols=112 Identities=25% Similarity=0.260 Sum_probs=90.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++ .|+.||+.+..... .
T Consensus 35 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--- 105 (241)
T PRK14250 35 VGPSGAGK-STLIKLINRL-IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--- 105 (241)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C---
Confidence 48899999 9999999999 89999999999998632 345678999999998887 59999987653321 1
Q ss_pred HHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....++. ++++.+++. +..++ .+||+|||||++ ++.+|++|+ ||
T Consensus 106 -~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 106 -EKNVDVE----YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred -cHHHHHH----HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1123566 889999996 44555 999999999995 578999988 77
No 183
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=152.33 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=91.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--C---CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--G---TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~---~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ | ++|+|+++|+++.. ..+++.++|++|++.+++.+|+.||+.+.....
T Consensus 36 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 113 (252)
T PRK14256 36 IGPSGCGK-STVLRSINRM-HDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN 113 (252)
T ss_pred ECCCCCCH-HHHHHHHHhc-ccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc
Confidence 47899999 9999999999 65 3 69999999998632 345778999999999999999999998764332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+.+. ++++.+++.. ..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 114 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 114 G--RVNRSEADEIVE----SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 112333445567 8899999853 2334 899999999995 578999988 77
No 184
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=8.1e-24 Score=159.00 Aligned_cols=118 Identities=21% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecCh---hh---hc-ceEEEEeeCc--cCCCCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNL---SQ---FR-KLSCYIMQDN--QLHANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~---~~---~r-~~ig~v~q~~--~l~~~ltv~e~l~~~~~ 69 (127)
-|.+|||| |||+++|+|+ ++|+ +|+|.++|+++.. .. +| +.|+||||++ .++|.+|+.+++.....
T Consensus 48 vG~sGsGK-STL~~~l~Gl-~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~ 125 (330)
T PRK09473 48 VGESGSGK-SQTAFALMGL-LAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLM 125 (330)
T ss_pred ECCCCchH-HHHHHHHHcC-CCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHH
Confidence 47899999 9999999999 7885 9999999998632 22 23 4799999997 68999999999877654
Q ss_pred cccCccccHHHHHhhhccchHHHHHHhCCCcc---CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 70 LKLGKDLTKAARKDVFSMRDCHFLHLSGHLPR---GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+. .....+..+++. ++++.++|.+. .+. ++|||||+||++ |+.+|++|+ ||
T Consensus 126 ~~~--~~~~~~~~~~~~----~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 126 LHK--GMSKAEAFEESV----RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred Hhc--CCCHHHHHHHHH----HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 321 234455556777 99999999642 233 999999999995 688999998 77
No 185
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=7.3e-24 Score=181.76 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=99.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCC---CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS---GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~---~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+ +++|+|.++|+++.. .+++.+|||+|++.+++.+||+||+.+.+.++.+...+.
T Consensus 795 ~G~sGaGK-STLL~~Lag~-~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~ 871 (1394)
T TIGR00956 795 MGASGAGK-TTLLNVLAER-VTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871 (1394)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCH
Confidence 48999999 9999999999 66 688999999999753 467889999999999999999999999877654333445
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--C----CCCHHHHHHHH----HhcCCc-eee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--L----NLSGLWGIGVF----NVLSPL-ATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~----~LSgG~rqrv~----l~~~P~-vl~--~~ 127 (127)
.+..++++ ++++.+++.+..++ + +||||||||++ |+.+|+ ||| ||
T Consensus 872 ~~~~~~v~----~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP 929 (1394)
T TIGR00956 872 SEKMEYVE----EVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP 929 (1394)
T ss_pred HHHHHHHH----HHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC
Confidence 55566788 99999999888777 4 79999999995 678997 666 87
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.8e-24 Score=167.06 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=93.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeC---ccCCCCCCHHHHHHHHHhcc---
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQD---NQLHANLTVEEAMNVATALK--- 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~---~~l~~~ltv~e~l~~~~~~~--- 71 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|+++.. ...++.++|++|+ ..+++++|+.||+.+....+
T Consensus 295 ~G~NGsGK-STLlk~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 372 (510)
T PRK09700 295 AGLVGSGR-TELMNCLFGV-DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGG 372 (510)
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccc
Confidence 48999999 9999999999 89999999999988632 2345689999998 46899999999998753211
Q ss_pred cCc--c-ccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGK--D-LTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~--~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... + .......+.+. ++++.+++. +..++ .+|||||||||+ ++.+|+||+ ||
T Consensus 373 ~~~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 373 YKGAMGLFHEVDEQRTAE----NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred ccccccccChHHHHHHHH----HHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 000 0 11222334567 899999996 66666 999999999995 578999998 87
No 187
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=8.7e-24 Score=150.92 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCC--CCCHHHHHHHHHhccc-CccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA--NLTVEEAMNVATALKL-GKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~--~ltv~e~l~~~~~~~~-~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|+++. ..++.++|++|++.+++ .+|+.+|+.++..... ......
T Consensus 12 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 87 (223)
T TIGR03771 12 LGPNGAGK-TTLLRAILGL-IPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPC 87 (223)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCc
Confidence 47899999 9999999999 8999999999998763 24567999999987643 4799999987532110 000111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 88 ~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP 140 (223)
T TIGR03771 88 VADFAAVR----DALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEP 140 (223)
T ss_pred HHHHHHHH----HHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22334577 89999999876666 999999999995 678999998 77
No 188
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=1.3e-23 Score=165.08 Aligned_cols=120 Identities=17% Similarity=0.033 Sum_probs=93.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC--CcceEEECCEecCh---h-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG--TEGSITINGHERNL---S-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK- 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~--~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~- 74 (127)
-|++|||| |||+++|+|+ .+| ++|+|.++|+++.. . ..++.++||+|++.+++.+|+.||+.+........
T Consensus 33 iG~nGsGK-STLl~~i~G~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 110 (500)
T TIGR02633 33 CGENGAGK-STLMKILSGV-YPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGG 110 (500)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcccccccc
Confidence 37899999 9999999999 776 79999999998643 1 23467999999999999999999998764322100
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccC-CC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRG-TL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++.+.. ++ .+|||||||||+ ++.+|+||+ ||
T Consensus 111 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 111 RMAYNAMYLRAK----NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred ccCHHHHHHHHH----HHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 122333445677 999999997654 34 899999999995 578999998 87
No 189
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=8.1e-24 Score=148.20 Aligned_cols=111 Identities=16% Similarity=0.059 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++.... ++.++|++|++.+++.+|+.||+.+....+ . .
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~ 100 (195)
T PRK13541 32 KGANGCGK-SSLLRMIAGI-MQPSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----S 100 (195)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----c
Confidence 47899999 9999999999 8999999999998874322 356999999988888899999998764322 1 1
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||+||+||++ ++.+|++++ ||
T Consensus 101 ~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 101 AETLY----AAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred HHHHH----HHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23456 88899999776666 999999999995 678999988 77
No 190
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=153.88 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=89.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|+++. ...+++.++|++|++.+|+. |++||+.+....+
T Consensus 45 ~G~nGsGK-STLl~~l~Gl-~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~ 121 (269)
T PRK14259 45 IGPSGCGK-STVLRSLNRM-NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN 121 (269)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc
Confidence 47899999 9999999999 66 58999999998863 23456789999999998885 9999998865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... ....+.+. ++++.+++. +..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 122 ---~~~-~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 181 (269)
T PRK14259 122 ---GYT-GDMDELVE----RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181 (269)
T ss_pred ---CCc-HHHHHHHH----HHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 122 12334556 778888764 23444 899999999995 578999988 77
No 191
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=1.1e-23 Score=166.26 Aligned_cols=117 Identities=19% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEEC-----------------------CEec----------Ch---hhhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITIN-----------------------GHER----------NL---SQFRK 43 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~-----------------------G~~~----------~~---~~~r~ 43 (127)
-|++|||| |||+++|+|+ . +|++|+|.++ |.++ .. ..+++
T Consensus 32 iG~nGsGK-STLl~~l~Gl-~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 109 (520)
T TIGR03269 32 LGRSGAGK-SVLMHVLRGM-DQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRK 109 (520)
T ss_pred ECCCCCCH-HHHHHHHhhc-ccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhh
Confidence 48999999 9999999999 6 6999999997 2221 01 12456
Q ss_pred eEEEEeeC-ccCCCCCCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----
Q psy1497 44 LSCYIMQD-NQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF---- 116 (127)
Q Consensus 44 ~ig~v~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~---- 116 (127)
.++|++|+ +.+++.+|++||+.+..... +....+..+++. ++++.+++.+..++ .+|||||||||+
T Consensus 110 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~a 182 (520)
T TIGR03269 110 RIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAV----DLIEMVQLSHRITHIARDLSGGEKQRVVLARQ 182 (520)
T ss_pred cEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH----HHHHHcCChhhhhcCcccCCHHHHHHHHHHHH
Confidence 79999997 68899999999998865432 233444556777 99999999876666 999999999995
Q ss_pred HhcCCceee--cC
Q psy1497 117 NVLSPLATY--EP 127 (127)
Q Consensus 117 l~~~P~vl~--~~ 127 (127)
++.+|++|+ ||
T Consensus 183 l~~~p~lllLDEP 195 (520)
T TIGR03269 183 LAKEPFLFLADEP 195 (520)
T ss_pred HhcCCCEEEeeCC
Confidence 678999998 87
No 192
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=4.2e-24 Score=153.45 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=85.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++.. ..+++.++|++|++.+++ .|+.||+.+.... ...
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~ 105 (237)
T cd03252 34 VGRSGSGK-STLTKLIQRF-YVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSM 105 (237)
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCH
Confidence 47899999 9999999999 89999999999988632 345678999999988875 5999999774321 111
Q ss_pred HHHH-----hhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARK-----DVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~-----~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.... ..+. ++++.+ ++....+. .+||+|||||++ ++.+|++|+ ||
T Consensus 106 ~~~~~~~~~~~~~----~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (237)
T cd03252 106 ERVIEAAKLAGAH----DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEA 165 (237)
T ss_pred HHHHHHHHHcCcH----HHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 1111 1223 556655 55544444 999999999995 678999988 77
No 193
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=169.24 Aligned_cols=118 Identities=17% Similarity=0.080 Sum_probs=93.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec-------------Ch---hhhc-ceEEEEeeCc--cCCCCCCHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER-------------NL---SQFR-KLSCYIMQDN--QLHANLTVEE 62 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~-------------~~---~~~r-~~ig~v~q~~--~l~~~ltv~e 62 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++ .. ..++ +.||||+|++ .+++.+||.|
T Consensus 48 vG~nGsGK-STLl~~l~Gl-l~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e 125 (623)
T PRK10261 48 VGESGSGK-SVTALALMRL-LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125 (623)
T ss_pred ECCCCChH-HHHHHHHHcC-CCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHH
Confidence 47899999 9999999999 899999999998643 11 1222 4799999997 6889999999
Q ss_pred HHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCc---cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 63 AMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP---RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 63 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
|+.++...+. +....+..+++. ++++.+||.+ ..+. .+|||||||||+ |+.+|+||+ ||
T Consensus 126 ~l~~~~~~~~--~~~~~~~~~~~~----~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 126 QIAESIRLHQ--GASREEAMVEAK----RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHH----HHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9998765421 234455566778 9999999964 3444 999999999995 678999998 87
No 194
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=151.20 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+| ++|+|.++|.++.. ...++.++|++|++.+++ +|++||+.+.....
T Consensus 36 ~G~nGsGK-STLl~~l~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~ 112 (251)
T PRK14270 36 IGPSGCGK-STFLRCLNRM-NDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIH 112 (251)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhc
Confidence 47899999 9999999999 664 79999999998632 234678999999999887 89999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+++. ++++.+++.+ ..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 113 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 174 (251)
T PRK14270 113 G--IKDKKELDKIVE----WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174 (251)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112233445667 8889998742 2344 999999999995 578999988 77
No 195
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=7e-24 Score=172.42 Aligned_cols=118 Identities=17% Similarity=0.071 Sum_probs=87.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ +.|++|+|.++|.++ +...+|+.|+||+|++.+|+. |++||+.++.. ..+.
T Consensus 511 vG~sGsGK-STLlklL~gl-~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~ 582 (710)
T TIGR03796 511 VGGSGSGK-STIAKLVAGL-YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD 582 (710)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH
Confidence 47899999 9999999999 999999999999986 346789999999999999987 99999987521 1233
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEp 642 (710)
T TIGR03796 583 ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEA 642 (710)
T ss_pred HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECc
Confidence 3322222210 22444433 33332222 889999999996 578999988 76
No 196
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=154.18 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|.++. ...+++.++|++|++.+++. |+.||+.+.....
T Consensus 71 ~G~nGsGK-STLl~~l~Gl-~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~ 147 (285)
T PRK14254 71 IGPSGCGK-STFLRCINRM-NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ 147 (285)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc
Confidence 47899999 9999999999 66 68999999998863 23456789999999988886 9999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+... ...+.+. ++++.+++.. ..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 148 ---~~~~-~~~~~~~----~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 148 ---GYDG-DIDERVE----ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred ---CCcH-HHHHHHH----HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1222 2345567 8899998852 3344 899999999995 678999998 77
No 197
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.9e-24 Score=152.33 Aligned_cols=114 Identities=22% Similarity=0.153 Sum_probs=87.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ .+|++|+|+++|.++. ....++.++|++|++.+++ .|++||+.++.... ..
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~-----~~ 105 (234)
T cd03251 34 VGPSGSGK-STLVNLIPRF-YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGA-----TR 105 (234)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCC-----CH
Confidence 47899999 9999999999 8999999999998863 2345678999999998887 59999998753211 11
Q ss_pred HHHH-----hhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARK-----DVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~-----~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.... ..+. ++++.+ ++....+. .+||+|||||++ ++.+|++++ ||
T Consensus 106 ~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 165 (234)
T cd03251 106 EEVEEAARAANAH----EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEA 165 (234)
T ss_pred HHHHHHHHHcCcH----HHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1111 1234 666666 56655555 899999999995 688999988 77
No 198
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.90 E-value=3e-24 Score=153.20 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=88.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.++|++|++.+++ .|+.||+.++...........
T Consensus 46 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~ 122 (226)
T cd03248 46 VGPSGSGK-STVVALLENF-YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKE 122 (226)
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHH
Confidence 47899999 9999999999 89999999999987532 345678999999998887 599999987532110000001
Q ss_pred HHHHhhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+. ++++.+ |+....+. .+||+|||||++ ++.+|++++ ||
T Consensus 123 ~~~~~~~~----~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 177 (226)
T cd03248 123 AAQKAHAH----SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEA 177 (226)
T ss_pred HHHHcCcH----HHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11112345 788888 77665555 999999999995 678999988 87
No 199
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=151.67 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=90.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--C---CcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--G---TEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~---~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ .. | ++|+|+++|+++. ...+++.++|++|++.+++. |++||+.+.....
T Consensus 44 ~G~nGsGK-STLl~~l~G~-~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 120 (259)
T PRK14274 44 IGPSGCGK-STFIKTLNLM-IQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH 120 (259)
T ss_pred ECCCCCCH-HHHHHHHHhh-ccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc
Confidence 47899999 9999999999 66 3 6999999999863 13456789999999998886 9999998764332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+++. ++++.+++.+ ..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 121 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 182 (259)
T PRK14274 121 G--TKNKKKLQEIVE----KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEP 182 (259)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 112334445567 8888988853 2344 999999999995 578999988 77
No 200
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=1.8e-23 Score=179.67 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=99.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ .. +.+|+|.++|++......++.+|||+|++.+++.+||+||+.+.+.++.+...+..
T Consensus 912 ~G~sGaGK-TTLL~~LaG~-~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~ 989 (1470)
T PLN03140 912 MGVSGAGK-TTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKE 989 (1470)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHH
Confidence 48999999 9999999999 65 37899999999876555667899999999999999999999998766543333445
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++ ++++.++|.+..+. ..||||||||++ |+.+|+||| ||
T Consensus 990 ~~~~~v~----~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 990 EKMMFVD----EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred HHHHHHH----HHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 5556778 99999999876666 379999999995 688999998 87
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=3.3e-23 Score=151.65 Aligned_cols=118 Identities=21% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
.|.+|||| |||+++|+|+ .+|++|+|+++|.++.. ..+++.++|++|++ .+++..|+.+++.+......
T Consensus 44 ~G~nGsGK-STLl~~l~Gl-~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~- 120 (268)
T PRK10419 44 LGRSGCGK-STLARLLVGL-ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL- 120 (268)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc-
Confidence 47899999 9999999999 89999999999998632 23467899999997 46778899999876432110
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+....+. ++++.+++. ...+. .+||+||+||++ ++.+|+||+ ||
T Consensus 121 -~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEP 178 (268)
T PRK10419 121 -SLDKAERLARAS----EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178 (268)
T ss_pred -cCCHHHHHHHHH----HHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 122334445677 999999996 45555 999999999995 688999988 77
No 202
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=2.3e-23 Score=150.94 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ .+ .+|+|.++|+++.. ...++.++|++|++.+++.+|+.+|+.+.... ....
T Consensus 28 ~G~nGsGK-STLl~~l~Gl-~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~----~~~~ 100 (248)
T PRK03695 28 VGPNGAGK-STLLARMAGL-LP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD----KTRT 100 (248)
T ss_pred ECCCCCCH-HHHHHHHcCC-CC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc----CCCc
Confidence 47899999 9999999999 65 59999999998642 34456799999999888889999999876321 1122
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----Hhc-------CCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVL-------SPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~-------~P~vl~--~~ 127 (127)
.+..+.+. ++++.+++.+..++ .+||+|||||++ ++. +|++|+ ||
T Consensus 101 ~~~~~~~~----~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 101 EAVASALN----EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred HHHHHHHH----HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 33345667 99999999876666 999999999996 455 669888 77
No 203
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=1.9e-23 Score=166.93 Aligned_cols=117 Identities=18% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ +.|++|+|.++|.++. ...+++.|+||+|++.+|++ |+++|+.++.. .+.
T Consensus 373 vG~SGsGK-STLl~lL~gl-~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~d 443 (592)
T PRK10790 373 VGHTGSGK-STLASLLMGY-YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------ISE 443 (592)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------CCH
Confidence 47899999 9999999999 9999999999999864 46788999999999999998 99999988631 222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 444 ~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEp 503 (592)
T PRK10790 444 EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA 503 (592)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 2222211100 11333333 23222222 789999999996 578999988 77
No 204
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.1e-23 Score=162.10 Aligned_cols=119 Identities=17% Similarity=0.062 Sum_probs=100.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---h-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc-Ccccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---L-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL-GKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~ 77 (127)
|.+|||| |||+|+|+|. ++|++|+|+++|+... + ......|..|+|+.++.|+|||.||+.++..... ...++
T Consensus 41 GeNGAGK-STLmKiLsGv-~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id 118 (500)
T COG1129 41 GENGAGK-STLMKILSGV-YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID 118 (500)
T ss_pred cCCCCCH-HHHHHHHhCc-ccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccC
Confidence 6799999 9999999999 9999999999999863 2 3446789999999999999999999998866543 23456
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.+. ++|+.+++....+. .+||.||||.|+ +..+++||+ ||
T Consensus 119 ~~~m~~~A~----~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEP 172 (500)
T COG1129 119 RKAMRRRAR----ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEP 172 (500)
T ss_pred HHHHHHHHH----HHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 677788888 99999999533555 999999999996 567999988 87
No 205
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=150.34 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|.++|+++.. ..+++.++|++|++.+++. |+.+|+.+....+
T Consensus 37 ~G~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~ 113 (251)
T PRK14244 37 IGPSGCGK-STFLRCFNRM-NDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH 113 (251)
T ss_pred ECCCCCCH-HHHHHHHHhh-cccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc
Confidence 47899999 9999999999 65 479999999988632 2356789999999998886 9999998764332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 114 ~-~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 114 G-LAKNKKKLDEIVE----KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred C-CCCCHHHHHHHHH----HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 0112233345567 8899999864 2334 899999999995 578999988 77
No 206
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=155.73 Aligned_cols=120 Identities=17% Similarity=0.035 Sum_probs=89.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCC----CCcceEEECCEecCh---hh----hcceEEEEeeCcc--CCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS----GTEGSITINGHERNL---SQ----FRKLSCYIMQDNQ--LHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~----~~~G~i~i~G~~~~~---~~----~r~~ig~v~q~~~--l~~~ltv~e~l~~~~ 68 (127)
-|.+|||| |||+++|+|+ .+ +++|+|+|+|+++.. .. .++.|+||||++. +++.+|+.+++....
T Consensus 39 vG~sGsGK-STLl~~i~Gl-~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~ 116 (330)
T PRK15093 39 VGESGSGK-SLIAKAICGV-TKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNI 116 (330)
T ss_pred ECCCCCCH-HHHHHHHHcc-CCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHH
Confidence 37899999 9999999999 65 589999999998632 22 1347999999975 688899999997643
Q ss_pred hcccCcc---ccHHHHHhhhccchHHHHHHhCCCcc---CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 69 ALKLGKD---LTKAARKDVFSMRDCHFLHLSGHLPR---GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 69 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+ ....+..+.+. ++++.+||.+. .+. .+|||||+|||+ |+.+|+||+ ||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~----~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 117 PGWTYKGRWWQRFGWRKRRAI----ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred HhhhccccccccHHHHHHHHH----HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 2110000 01123445677 99999999753 344 999999999995 688999998 77
No 207
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.2e-23 Score=149.39 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=90.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .++ ++|+|+++|+++.. ...++.++|++|++.+++ +|+.+|+.+.....
T Consensus 35 ~G~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~ 111 (250)
T PRK14240 35 IGPSGCGK-STFLRTLNRM-NDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTH 111 (250)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhc
Confidence 47899999 9999999998 652 69999999998642 345678999999998888 89999998865332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 112 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (250)
T PRK14240 112 G--IKDKKKLDEIVE----KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173 (250)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112333455667 8888888742 2344 899999999995 678999988 77
No 208
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.90 E-value=1e-23 Score=171.00 Aligned_cols=117 Identities=18% Similarity=0.124 Sum_probs=85.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+|+|+|+ +.|++|+|.++|+++. ...+|+.+|||+|++.+|+. |++||+.++.. .+.
T Consensus 485 vG~sGsGK-STLlklL~gl-~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~ 555 (686)
T TIGR03797 485 VGPSGSGK-STLLRLLLGF-ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL 555 (686)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH
Confidence 37899999 9999999999 9999999999999864 46789999999999999988 99999987632 122
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .++.++.+ |++..... .+||||||||++ ++.+|+||+ ||
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2222111100 11333332 22222222 789999999996 578999988 76
No 209
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=149.71 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=89.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|+++.. ..+++.++|++|++.+++ .|++||+.++....
T Consensus 36 ~G~nGsGK-STLl~~l~Gl-~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~ 112 (251)
T PRK14251 36 IGPSGCGK-STFLRCLNRM-NDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA 112 (251)
T ss_pred ECCCCCCH-HHHHHHHhhc-cccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc
Confidence 48899999 9999999999 76 479999999998632 235678999999998886 69999998764322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. ...+. .+||+||+||++ ++.+|++++ ||
T Consensus 113 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP 174 (251)
T PRK14251 113 G--VKDKELIDQRVE----ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174 (251)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1 111222344566 888888884 22344 899999999995 678999988 77
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.8e-23 Score=150.47 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+| ++|+|.++|+++.. ..++..++|++|++.+|+ +|++||+.++...+
T Consensus 39 ~G~nGsGK-STLlk~l~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~ 115 (259)
T PRK14260 39 IGPSGCGK-STFIKTLNRI-SELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRIS 115 (259)
T ss_pred ECCCCCCH-HHHHHHHHhh-cCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHh
Confidence 47899999 9999999999 674 58999999998632 345678999999999888 89999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+.+. ++++.+++. +..+. .+||+||+||++ ++.+|++++ ||
T Consensus 116 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 177 (259)
T PRK14260 116 A--KLPQADLDEIVE----SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177 (259)
T ss_pred c--CCCHHHHHHHHH----HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 122333445666 888888874 23444 899999999995 578999988 77
No 211
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=2.5e-23 Score=164.15 Aligned_cols=116 Identities=18% Similarity=0.123 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEEC-CEe---cCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITIN-GHE---RNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~-G~~---~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ .+|++|+|.++ |.+ +.. ...++.++|++|++.+++.+||.||+.+...+.
T Consensus 316 ~G~NGsGK-STLl~~l~Gl-~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 393 (520)
T TIGR03269 316 VGTSGAGK-TTLSKIIAGV-LEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE 393 (520)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC
Confidence 47899999 9999999999 89999999995 532 211 123567999999999999999999998754321
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc-----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP-----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......++.+. ++++.+++.+ ..++ .+||||||||++ ++.+|+||+ ||
T Consensus 394 ----~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEP 454 (520)
T TIGR03269 394 ----LPDELARMKAV----ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454 (520)
T ss_pred ----CCHHHHHHHHH----HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22333345677 8999999964 3455 999999999995 578999988 87
No 212
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=163.00 Aligned_cols=120 Identities=23% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHHhcccC-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVATALKLG- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~~~~~- 73 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.+||++|++ .+++.+|+.||+.+.......
T Consensus 284 iG~NGsGK-STLl~~l~G~-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 361 (501)
T PRK10762 284 SGLMGAGR-TELMKVLYGA-LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSR 361 (501)
T ss_pred ecCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcc
Confidence 48899999 9999999999 89999999999988642 23456799999996 588999999999875321100
Q ss_pred --ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 --KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+..+.+. ++++.+++. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 362 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP 422 (501)
T PRK10762 362 AGGSLKHADEQQAVS----DFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422 (501)
T ss_pred cccccCHHHHHHHHH----HHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 0012233345677 999999995 55666 999999999995 578999988 87
No 213
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=5.6e-24 Score=144.53 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=99.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---------hhhcceEEEEeeCccCCCCCCHHHHHHHHH-hcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---------SQFRKLSCYIMQDNQLHANLTVEEAMNVAT-ALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~-~~~ 71 (127)
-|++|||| |||++.|.-+ .-|.+|+..|.|...+. .++|+.+|+|+|...+||++||.||+.-+. +..
T Consensus 34 lgpsgagk-ssllr~lnll-e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~ 111 (242)
T COG4161 34 LGPSGAGK-SSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL 111 (242)
T ss_pred ECCCCCch-HHHHHHHHHH-hCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHh
Confidence 48999999 9999999988 78999999998865321 456889999999999999999999987642 222
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++++.+...++. ++++++.|.+.+|+ -.|||||+|||+ |...|+||+ ||
T Consensus 112 ---gl~~~qa~~~a~----ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdep 168 (242)
T COG4161 112 ---GLSKDQALARAE----KLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168 (242)
T ss_pred ---CCCHHHHHHHHH----HHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCc
Confidence 577888888888 99999999999999 999999999996 467999987 66
No 214
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.8e-23 Score=152.64 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=89.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ .. |++|+|.++|.++.. ..+++.++|++|++.+++. |+.||+.+....+
T Consensus 71 ~G~nGsGK-STLl~~L~Gl-~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~ 147 (286)
T PRK14275 71 IGPSGCGK-STFLRAINRM-NDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH 147 (286)
T ss_pred ECCCCCCH-HHHHHHHhcc-cccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc
Confidence 47899999 9999999998 54 499999999988632 2356789999999988885 9999999865432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. +..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 148 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 209 (286)
T PRK14275 148 G--INDKKQLEEIVE----KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP 209 (286)
T ss_pred C--CCcHHHHHHHHH----HHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112233345566 888888874 33344 999999999995 678999988 77
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-23 Score=150.41 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=90.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|.++.. ..+++.++|++|++.+++ .|+.||+.++....
T Consensus 52 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~ 128 (267)
T PRK14237 52 IGPSGSGK-STYLRSLNRM-NDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA 128 (267)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc
Confidence 48899999 9999999999 75 589999999998642 245678999999998887 59999998864322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 129 ~--~~~~~~~~~~~~----~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 129 G--VKDKKVLDEIVE----TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112333445667 8888988853 3344 999999999995 678999988 77
No 216
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.9e-23 Score=149.11 Aligned_cols=117 Identities=25% Similarity=0.190 Sum_probs=89.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--C---CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--G---TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~---~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ .. | ++|+|+++|+++.. ..+++.++|++|++.+++ +|+.||+.++....
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~ 113 (252)
T PRK14239 37 IGPSGSGK-STLLRSINRM-NDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK 113 (252)
T ss_pred ECCCCCCH-HHHHHHHhcc-cccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc
Confidence 48899999 9999999998 53 5 59999999998631 234678999999998887 79999998765332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 114 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14239 114 G--IKDKQVLDEAVE----KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEP 175 (252)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 111223345566 8888888742 2344 899999999995 578999988 77
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-23 Score=148.85 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+| ++|+|.++|.++.. ..+++.++|++|++.+++ .|++||+.+.....
T Consensus 35 ~G~nGsGK-STLl~~i~Gl-~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 111 (250)
T PRK14262 35 IGPSGCGK-TTLLRSINRM-NDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH 111 (250)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc
Confidence 47899999 9999999999 663 89999999988642 234678999999999888 79999998765332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 112 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP 173 (250)
T PRK14262 112 G--VKSKHKLDRIVE----ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173 (250)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1 112233344566 8888888853 2344 999999999995 578999988 77
No 218
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.6e-24 Score=150.81 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=84.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|.++. ...+++.++|++|++.+++. |+.||+.++.... ..
T Consensus 35 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~ 106 (229)
T cd03254 35 VGPTGAGK-TTLINLLMRF-YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TD 106 (229)
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CH
Confidence 48899999 9999999999 8999999999998863 23456789999999988886 9999997753211 11
Q ss_pred HHHHh-----hhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKD-----VFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~-----~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+ .+. ++++.+ ++....+. .+||+|||||++ ++.+|++++ ||
T Consensus 107 ~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP 166 (229)
T cd03254 107 EEVIEAAKEAGAH----DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEA 166 (229)
T ss_pred HHHHHHHHHhChH----HHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 11111 122 444444 45444444 899999999995 688999988 87
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=3.7e-23 Score=163.53 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=92.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|++|||| |||+++|+|+ . |++|+|+++|+++.. . .+++.++|++|++ .+++.+||.||+.++...+..
T Consensus 318 ~G~nGsGK-STLlk~l~Gl-~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 318 VGESGSGK-STTGLALLRL-I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred ECCCCCCH-HHHHHHHhCc-C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 48999999 9999999999 6 499999999988632 1 2356799999996 488899999999886533210
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+.++.+. ++++.+++. +..++ .+|||||||||+ ++.+|++|+ ||
T Consensus 395 -~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 452 (529)
T PRK15134 395 -TLSAAQREQQVI----AVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEP 452 (529)
T ss_pred -cCChHHHHHHHH----HHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCC
Confidence 122333445677 999999996 45555 999999999995 578999998 87
No 220
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.90 E-value=1.7e-23 Score=166.56 Aligned_cols=118 Identities=23% Similarity=0.222 Sum_probs=92.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||++.|+++ +.|++|+|.+||.++ +...+|+.|++|+|++.+|.. |+++|+.++.. ..+.
T Consensus 361 VG~sGsGK-STl~~LL~r~-~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~-----~at~ 432 (567)
T COG1132 361 VGPSGSGK-STLIKLLLRL-YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRP-----DATD 432 (567)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCC-----CCCH
Confidence 48999999 9999999999 999999999999986 447789999999999999995 99999998743 1234
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.+ .+++++.+ |++..... ..||||||||++ ++.+|+||+ ||
T Consensus 433 eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEa 492 (567)
T COG1132 433 EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA 492 (567)
T ss_pred HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 4444433322 34666666 45444433 789999999996 578999987 64
No 221
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=8.6e-24 Score=139.92 Aligned_cols=104 Identities=27% Similarity=0.245 Sum_probs=84.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...+..++|++|++.+++.+|+.+|
T Consensus 17 ~G~nGsGK-StLl~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~--------------- 79 (137)
T PF00005_consen 17 VGPNGSGK-STLLKALAGL-LPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN--------------- 79 (137)
T ss_dssp EESTTSSH-HHHHHHHTTS-SHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH---------------
T ss_pred EccCCCcc-ccceeeeccc-ccccccccccccccccccccccccccccccccccccccccccccc---------------
Confidence 37899999 9999999999 89999999999999754 5567889999999999999999999
Q ss_pred HHHHhhhccchHHHHHHhCCCccC----CC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRG----TL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~----~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+.+. ++++.+++.+.. +. .+||+|||||++ ++.+|++++ ||
T Consensus 80 -~~~~~~~----~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 80 -ESDERIE----EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp -HHHHHHH----HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred -ccccccc----ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1112344 666666664422 22 999999999995 678999988 87
No 222
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.8e-23 Score=148.04 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=89.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-----cceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-----EGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-----~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++|+ +|+|+++|.++.. ..+++.++|++|++.+++.+|+.||+.++....
T Consensus 36 ~G~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~ 113 (252)
T PRK14272 36 IGPSGCGK-TTFLRAINRM-HDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA 113 (252)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc
Confidence 47899999 9999999999 7764 8999999998642 245678999999999999999999998764322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .....+..+.+. ++++.+++. +..+. .+||+||+||++ ++.+|+||+ ||
T Consensus 114 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 114 G--IRDRDHLMEVAE----RSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112233344555 666767653 23344 999999999995 678999988 77
No 223
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=1.9e-23 Score=169.86 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=87.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ +.|++|+|+++|.++ +...+|+.||||+|++.+|+. |++||+.++... ..+.
T Consensus 506 vG~SGsGK-STLlklL~gl-~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~ 578 (708)
T TIGR01193 506 VGMSGSGK-STLAKLLVGF-FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQ 578 (708)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC----CCCH
Confidence 47899999 9999999999 999999999999985 446788999999999999988 999999886321 1223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCC-C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGT-L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~-~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++.... . .+||||||||++ ++.+|+||+ ||
T Consensus 579 ~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~ 638 (708)
T TIGR01193 579 DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638 (708)
T ss_pred HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 3322222100 22444433 3332222 2 889999999996 578999988 76
No 224
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=6.8e-23 Score=148.80 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=89.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC----CcceEEECCEecChhhh-cceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG----TEGSITINGHERNLSQF-RKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~----~~G~i~i~G~~~~~~~~-r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.+|||| |||+++|+|+ .+| ++|+|+++|+++..... ++.++|++|++. +.+.+|+.+++.+.....
T Consensus 35 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--- 109 (254)
T PRK10418 35 VGGSGSGK-SLTCAAALGI-LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL--- 109 (254)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---
Confidence 47899999 9999999999 788 99999999998754333 357999999974 556679999887654322
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCc---cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLP---RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+... ..+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|+||+ ||
T Consensus 110 ~~~~--~~~~~~----~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEP 167 (254)
T PRK10418 110 GKPA--DDATLT----AALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEP 167 (254)
T ss_pred CCCh--HHHHHH----HHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111 224567 8999999976 3445 999999999995 678999998 77
No 225
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.90 E-value=5.9e-23 Score=149.34 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=90.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-----cCh---hh----hcceEEEEeeCc--cCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-----RNL---SQ----FRKLSCYIMQDN--QLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-----~~~---~~----~r~~ig~v~q~~--~l~~~ltv~e~l~~~ 67 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.+ +.. .. .++.++|++|++ .+++.+|+.+|+.+.
T Consensus 38 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~ 115 (258)
T PRK11701 38 VGESGSGK-TTLLNALSAR-LAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGER 115 (258)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHH
Confidence 47899999 9999999999 89999999999987 532 11 245799999997 467888999998764
Q ss_pred HhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 68 TALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... .....+..+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 116 ~~~~~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 116 LMAVG--ARHYGDIRATAG----DWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred HHHhc--cCcHHHHHHHHH----HHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 32111 111223345567 8999999963 4555 999999999995 578999998 87
No 226
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.1e-23 Score=150.46 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|.++|+++.. ..+++.++|++|++.+++. |+.||+.+.....
T Consensus 53 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 129 (268)
T PRK14248 53 IGPSGCGK-STFLRSINRM-NDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA 129 (268)
T ss_pred ECCCCCCH-HHHHHHHHhc-ccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc
Confidence 47899999 9999999998 54 689999999998642 2356789999999998885 9999998764322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. +..+. .+||+|||||++ ++.+|++|+ ||
T Consensus 130 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 191 (268)
T PRK14248 130 G--ERRKSVLDEIVE----ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEP 191 (268)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1 111222334566 778888874 22344 999999999995 678999988 77
No 227
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.3e-23 Score=147.97 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-----cceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-----EGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-----~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+|+ +|+|.++|.++.. ..+++.++|++|++.+++. |+.||+.+....+
T Consensus 36 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 112 (251)
T PRK14249 36 IGPSGCGK-STLLRALNRM-NDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRML 112 (251)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhc
Confidence 47899999 9999999999 7886 6999999988632 2456789999999999885 9999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|++++ ||
T Consensus 113 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 174 (251)
T PRK14249 113 G--TTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174 (251)
T ss_pred C--CChhhHHHHHHH----HHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 111222334556 7778888742 2344 999999999995 678999988 77
No 228
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=4.4e-23 Score=162.09 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHHh--cc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVATA--LK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~--~~ 71 (127)
-|++|||| |||+++|+|+ .+| ++|+|.++|+++.. ..+++.++|++|++ .+++++|+++|+.+... ..
T Consensus 292 ~G~NGsGK-STLl~~l~G~-~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~ 369 (500)
T TIGR02633 292 AGLVGAGR-TELVQALFGA-YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFC 369 (500)
T ss_pred eCCCCCCH-HHHHHHHhCC-CCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhc
Confidence 48899999 9999999999 785 89999999998642 33467899999995 58999999999987532 11
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..........++.+. ++++.+++.+ ..++ .+||||||||++ ++.+|+||+ ||
T Consensus 370 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 430 (500)
T TIGR02633 370 FKMRIDAAAELQIIG----SAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430 (500)
T ss_pred cCCcCCHHHHHHHHH----HHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 000112233445677 9999999963 4555 999999999995 578999998 87
No 229
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.90 E-value=3.6e-23 Score=168.49 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=86.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+++.|+||+|++.+|+. |++||+.++.. ..+.
T Consensus 513 vG~SGsGK-STLl~lL~gl-~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~ 584 (711)
T TIGR00958 513 VGPSGSGK-STVAALLQNL-YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPD 584 (711)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCH
Confidence 47899999 9999999999 9999999999999864 46678899999999999987 99999988632 1222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 585 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEp 644 (711)
T TIGR00958 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644 (711)
T ss_pred HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 3322221100 12344443 33322222 789999999996 578999988 76
No 230
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.1e-23 Score=150.21 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ ++| ++|+|.++|.++.. ..++..++|++|++.+|+ .|+++|+.+......
T Consensus 53 ~G~nGsGK-STLl~~l~Gl-~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~ 129 (276)
T PRK14271 53 MGPTGSGK-TTFLRTLNRM-NDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK 129 (276)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc
Confidence 47899999 9999999999 775 79999999988632 345678999999999888 799999987643221
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.. ..+. .+||+||+||++ ++.+|+|++ ||
T Consensus 130 --~~~~~~~~~~~~----~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEP 190 (276)
T PRK14271 130 --LVPRKEFRGVAQ----ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEP 190 (276)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 123333444566 8888888864 2334 899999999995 578999988 77
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=4.4e-23 Score=151.42 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=91.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC--------cceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT--------EGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~--------~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|.+|||| |||+++|+|+ ++|+ +|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.+....
T Consensus 33 ~G~nGsGK-STLl~~laG~-~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~ 110 (272)
T PRK13547 33 LGRNGAGK-STLLKALAGD-LTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYP 110 (272)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccc
Confidence 47899999 9999999999 8887 9999999998632 34556799999998766678999999875321
Q ss_pred ccC-ccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----Hh---------cCCceee--cC
Q psy1497 71 KLG-KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NV---------LSPLATY--EP 127 (127)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~---------~~P~vl~--~~ 127 (127)
... ......+..+.+. ++++.+++.+..++ .+||+||+||++ ++ .+|++|+ ||
T Consensus 111 ~~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEP 181 (272)
T PRK13547 111 HARRAGALTHRDGEIAW----QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181 (272)
T ss_pred cccccccCCHHHHHHHH----HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCc
Confidence 100 0111123345567 89999999877666 999999999996 45 4999988 77
No 232
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.7e-23 Score=161.75 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHHhcccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVATALKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~~~~~ 73 (127)
-|.+|||| |||+|+|+|+ ++ |++|+|.++|+++.. ...+..++|++|++ .+++++|+.||+.+.......
T Consensus 294 ~G~NGsGK-STLlk~i~Gl-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 371 (506)
T PRK13549 294 AGLVGAGR-TELVQCLFGA-YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFT 371 (506)
T ss_pred eCCCCCCH-HHHHHHHhCC-CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhc
Confidence 48899999 9999999999 78 599999999988642 23456799999995 588899999999875321110
Q ss_pred c--cccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 K--DLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~--~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++. +..++ .+|||||||||+ ++.+|+||+ ||
T Consensus 372 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEP 432 (506)
T PRK13549 372 GGSRIDDAAELKTIL----ESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432 (506)
T ss_pred cCcccChHHHHHHHH----HHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 0 012233445677 999999996 45566 999999999995 578999998 87
No 233
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.89 E-value=1.7e-23 Score=150.34 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=84.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++. ....++.++|++|++.+++ .|++||+.+..... ..
T Consensus 35 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~ 106 (238)
T cd03249 35 VGSSGCGK-STVVSLLERF-YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TD 106 (238)
T ss_pred EeCCCCCH-HHHHHHHhcc-CCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CH
Confidence 47899999 9999999999 8999999999998863 2344567999999998887 59999998753211 11
Q ss_pred HHHHh-----hhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKD-----VFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~-----~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+ .+. ++++.+ ++....+. .+||+|||||++ ++.+|++|+ ||
T Consensus 107 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 166 (238)
T cd03249 107 EEVEEAAKKANIH----DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEA 166 (238)
T ss_pred HHHHHHHHHcChH----HHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 11111 122 444444 44444444 899999999995 678999988 77
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-23 Score=162.30 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=92.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ .+|++|+|+++|+++.. ...++.++|++|++ .+++.+|+.||+.++.......
T Consensus 285 iG~NGsGK-STLlk~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 362 (501)
T PRK11288 285 FGLVGAGR-SELMKLLYGA-TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR 362 (501)
T ss_pred EcCCCCCH-HHHHHHHcCC-CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc
Confidence 47899999 9999999999 89999999999988642 23457899999996 4899999999998753211000
Q ss_pred -c--ccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 -D--LTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 -~--~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+ ......++.+. ++++.+++. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 363 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 363 AGCLINNRWEAENAD----RFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred cccccChHHHHHHHH----HHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 0 11223345577 999999994 55666 999999999995 578999998 87
No 235
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=165.24 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++||||++.+|+. |++||+.++.. ...+.
T Consensus 375 vG~sGsGK-STLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~ 447 (582)
T PRK11176 375 VGRSGSGK-STIANLLTRF-YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR 447 (582)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH
Confidence 47899999 9999999999 8999999999999864 35678899999999999987 99999987531 01223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEp 507 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 3222221100 11333333 22222222 779999999996 578999998 87
No 236
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.9e-23 Score=147.49 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCCCCCChHHHHHHHHhCCC--CCC--CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIK--TSG--TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~--~~~--~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+. .+| ++|+|.++|+++.. ...++.++|++|++.+++ .|+.||+.++...+.
T Consensus 35 ~G~nGsGK-STLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~ 112 (250)
T PRK14245 35 IGPSGCGK-STFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG 112 (250)
T ss_pred ECCCCCCH-HHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC
Confidence 47899999 99999999961 244 58999999998642 345678999999998887 599999987654321
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 113 --~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14245 113 --VKDNAFIRQRVE----ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173 (250)
T ss_pred --CCcHHHHHHHHH----HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111223445567 8899999853 2344 899999999995 678999988 77
No 237
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=3.7e-23 Score=161.79 Aligned_cols=117 Identities=25% Similarity=0.288 Sum_probs=95.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec--C---hhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER--N---LSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~--~---~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
|.||||| |||.|+|+|+ .+|++|+|.++|.+. . ....|+.+-+|||++ .+.|.+||.+++......+..
T Consensus 324 GeSGsGK-STlar~i~gL-~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~-- 399 (539)
T COG1123 324 GESGSGK-STLARILAGL-LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG-- 399 (539)
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--
Confidence 7899999 9999999999 899999999999872 1 133566788888874 689999999999987765532
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.++++. ++++.++|.. ++++ ++||||||||++ |+.+|++|+ ||
T Consensus 400 ~~~~~~~~rv~----~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp 456 (539)
T COG1123 400 GSGAERRARVA----ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEP 456 (539)
T ss_pred cchHHHHHHHH----HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCC
Confidence 22455556788 9999999975 5666 999999999995 688999998 76
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=148.16 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC------EecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING------HERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G------~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++| +++. ...++..++|++|++.+++.+|+.+|+.+......
T Consensus 42 ~G~nGsGK-STLl~~iaG~-~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 119 (257)
T PRK14246 42 MGPSGSGK-STLLKVLNRL-IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG 119 (257)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC
Confidence 37899999 9999999999 899997777766 3332 23456789999999999999999999988643221
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+.+. ++++.+++.+ ..+. ..||+|||||++ ++.+|++++ ||
T Consensus 120 --~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 120 --IKEKREIKKIVE----ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred --CCCHHHHHHHHH----HHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 112334445677 8899999853 3344 999999999995 688999998 77
No 239
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.9e-23 Score=149.82 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++ |++|+|.++|+++.. ..+++.++|++|++.+++. |+.||+.++...+
T Consensus 56 ~G~nGsGK-STLl~~i~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~ 132 (271)
T PRK14238 56 IGPSGCGK-STYIKTLNRM-VELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH 132 (271)
T ss_pred ECCCCCCH-HHHHHHHHhh-ccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc
Confidence 47899999 9999999999 76 699999999988631 3456789999999998875 9999998865332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCC----CccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGH----LPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++ .+..+. .+||+|||||++ ++.+|+||+ ||
T Consensus 133 ~--~~~~~~~~~~~~----~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEP 194 (271)
T PRK14238 133 G--IKDKKTLDEIVE----KSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP 194 (271)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 112222334455 66776654 223344 899999999995 678999988 77
No 240
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=147.37 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--C---CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--G---TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~---~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. | ++|+|.++|+++.. ...++.++|++|++.+|+. ||+||+.+....+
T Consensus 38 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~ 114 (253)
T PRK14261 38 IGPSGCGK-STLLRCFNRM-NDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIH 114 (253)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhc
Confidence 47899999 9999999998 55 3 48999999998632 3456789999999999885 9999999875432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .......++.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 115 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 115 G--EKNKKTLDTIVE----KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred C--CCCHHHHHHHHH----HHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112233345566 7888888743 2344 899999999995 678999988 77
No 241
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.89 E-value=2.4e-23 Score=164.43 Aligned_cols=118 Identities=22% Similarity=0.169 Sum_probs=85.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++. ...+|+.++||+|++.+|+. |++||+.++.. ..+.
T Consensus 354 vG~sGsGK-STL~~ll~g~-~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~ 425 (529)
T TIGR02857 354 VGPSGAGK-STLLNLLLGF-VDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD 425 (529)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH
Confidence 47899999 9999999999 9999999999999863 46678899999999999986 99999987532 1222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++..... .+||||||||++ ++.+|++++ ||
T Consensus 426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 426 AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 2222211100 11334333 23222222 789999999996 577999988 76
No 242
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=148.17 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ++| ++|+|+++|+++.. ..+++.++|++|++.++ .+|+.||+.++...+
T Consensus 40 ~G~nGsGK-STLl~~l~Gl-~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~ 116 (261)
T PRK14263 40 IGPSGCGK-STVLRSLNRM-NDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN 116 (261)
T ss_pred ECCCCCCH-HHHHHHHHcc-cccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhc
Confidence 47899999 9999999999 775 79999999998632 24567899999999888 589999998875432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCcc----CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPR----GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. ..+..+.+. ++++.+++.+. .+. .+||+||+||++ ++.+|++++ ||
T Consensus 117 ---~~-~~~~~~~~~----~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 117 ---RY-KGDLGDRVK----HALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred ---Cc-hHHHHHHHH----HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 123345677 88999998542 223 889999999995 678999998 77
No 243
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=2.4e-23 Score=147.97 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=83.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++. ...+++.++|++|++.+++ .|+.||+.+.... ...
T Consensus 36 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~ 107 (220)
T cd03245 36 IGRVGSGK-STLLKLLAGL-YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----ADD 107 (220)
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CCH
Confidence 47899999 9999999999 8999999999998863 2335678999999998887 5999998764321 111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCC------------C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGT------------L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~------------~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+++.+..+ . .+||+|||||++ ++.+|++|+ ||
T Consensus 108 ----~~~~----~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP 167 (220)
T cd03245 108 ----ERIL----RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167 (220)
T ss_pred ----HHHH----HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 2233 5555555543222 1 699999999995 678999988 87
No 244
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=8.5e-23 Score=160.96 Aligned_cols=120 Identities=20% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h-hhcceEEEEeeCc---cCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S-QFRKLSCYIMQDN---QLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~-~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++.. . ..+..++|++|++ .+++.+|+.+|+..........
T Consensus 295 ~G~NGsGK-STLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~ 372 (510)
T PRK15439 295 AGVVGAGR-TELAETLYGL-RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF 372 (510)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhcc
Confidence 48899999 9999999999 89999999999998632 1 2356799999984 5889999999986431110000
Q ss_pred cccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......++.++ ++++.+++. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 373 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 373 WIKPARENAVLE----RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred ccChHHHHHHHH----HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 111222334577 999999996 56666 999999999995 578999998 87
No 245
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=146.71 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=89.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecC----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|++|||| |||+++|+|+ .+| ++|+|+++|.++. ....++.++|++|++.+++ .|+.||+.+......
T Consensus 35 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~ 111 (249)
T PRK14253 35 IGPSGCGK-STLLRCLNRM-NDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG 111 (249)
T ss_pred ECCCCCCH-HHHHHHHHhh-cccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC
Confidence 47899999 9999999999 775 5999999998863 2345678999999999887 799999987643220
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|+|++ ||
T Consensus 112 --~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 172 (249)
T PRK14253 112 --IKDKKVLDEVVE----RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEP 172 (249)
T ss_pred --CCchHHHHHHHH----HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111233345566 7788888743 2334 899999999995 678999988 77
No 246
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-22 Score=147.96 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+ |++|+|+++|.++.. ..+++.++|++|++.+|+. |+.||+.+.....
T Consensus 57 ~G~nGsGK-STLl~~laGl-~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~ 133 (272)
T PRK14236 57 IGPSGCGK-STLLRCFNRM-NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ 133 (272)
T ss_pred ECCCCCCH-HHHHHHHHhc-CCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc
Confidence 47899999 9999999999 66 489999999998642 2456789999999999986 9999998765432
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 134 ~--~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 195 (272)
T PRK14236 134 G--INNRRVLDEAVE----RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195 (272)
T ss_pred C--CCcHHHHHHHHH----HHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 1 112223344566 8888888853 3344 999999999996 578999998 77
No 247
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-23 Score=148.23 Aligned_cols=114 Identities=21% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++. ...+++.++|++|++.+++ .|+.||+.++... ...
T Consensus 33 ~G~nGsGK-STLl~~i~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~ 104 (236)
T cd03253 33 VGPSGSGK-STILRLLFRF-YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATD 104 (236)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCH
Confidence 48999999 9999999999 8999999999998863 2445678999999998886 5999999875321 111
Q ss_pred HHHHh-----hhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKD-----VFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~-----~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+ .+. +.++.+ ++....+. .+||+|||||++ ++.+|++++ ||
T Consensus 105 ~~~~~~~~~~~l~----~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP 164 (236)
T cd03253 105 EEVIEAAKAAQIH----DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEA 164 (236)
T ss_pred HHHHHHHHHcCcH----HHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11111 122 444444 44443443 899999999995 688999998 77
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=9.7e-23 Score=161.18 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=91.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh---h---hhc-ceEEEEeeCcc--CCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL---S---QFR-KLSCYIMQDNQ--LHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~---~---~~r-~~ig~v~q~~~--l~~~ltv~e~l~~~ 67 (127)
-|++|||| |||+++|+|+ ++| ++|+|.++|+++.. . ..+ +.+||++|++. +++.+|+.+++.+.
T Consensus 41 iG~nGsGK-STLl~~i~G~-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~ 118 (529)
T PRK15134 41 VGESGSGK-SVTALSILRL-LPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEV 118 (529)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHH
Confidence 48999999 9999999999 775 79999999998632 1 123 57999999975 67778999998765
Q ss_pred HhcccCccccHHHHHhhhccchHHHHHHhCCCcc---CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 68 TALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPR---GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... +....+..+++. ++++.+++.+. .++ .+|||||||||+ |+.+|+||+ ||
T Consensus 119 ~~~~~--~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEP 183 (529)
T PRK15134 119 LSLHR--GMRREAARGEIL----NCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183 (529)
T ss_pred HHHhc--CCCHHHHHHHHH----HHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 43211 233444556777 99999999752 344 999999999995 678999998 87
No 249
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.89 E-value=6.2e-23 Score=166.59 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+|+.++||+|++.+|+. |++||+.++.. ..+.
T Consensus 497 vG~sGsGK-STLlklL~gl-~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~ 568 (694)
T TIGR03375 497 IGRIGSGK-STLLKLLLGL-YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADD 568 (694)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCH
Confidence 48899999 9999999999 9999999999999864 46789999999999999997 99999987531 1233
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~ 628 (694)
T TIGR03375 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3322222211 22344433 33322222 789999999996 578999988 76
No 250
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=5.7e-24 Score=147.83 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=97.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECC-EecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC----
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITING-HERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG---- 73 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G-~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~---- 73 (127)
|++|||| ||++.+|+|. .+|+.|+|+++| .++.. ...|..||.-||.|..|..+||+||+.++.....+
T Consensus 38 GpNGAGK-TT~mD~ItGK-trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~ 115 (249)
T COG4674 38 GPNGAGK-TTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS 115 (249)
T ss_pred CCCCCCc-eeeeeeeccc-CCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHH
Confidence 7899999 9999999999 899999999999 66532 44678999999999999999999999987543210
Q ss_pred -ccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 -KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+.+++++ ++|...||.+..+. ..||.||||++. ++++|++|+ ||
T Consensus 116 L~~r~~~~e~~rid----e~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEP 174 (249)
T COG4674 116 LFARLRAEERRRID----ELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174 (249)
T ss_pred hhhhcChhHHHHHH----HHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCc
Confidence 0111233345677 99999999988888 999999999996 589999988 77
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.6e-23 Score=150.26 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=88.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCC--CCCCHHHHHHHHHhcccC-ccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH--ANLTVEEAMNVATALKLG-KDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~--~~ltv~e~l~~~~~~~~~-~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.....+..++|++|++.++ ...++.+++.++...... .....
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 116 (272)
T PRK15056 39 VGVNGSGK-STLFKALMGF-VRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAK 116 (272)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCC
Confidence 47899999 9999999999 8999999999999875332234699999997653 234688887653211000 00111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.+. ++++.+++.+..++ .+||+|||||++ ++.+|+||+ ||
T Consensus 117 ~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 169 (272)
T PRK15056 117 KRDRQIVT----AALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP 169 (272)
T ss_pred HHHHHHHH----HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22344566 88999999876666 999999999995 678999988 77
No 252
>KOG0058|consensus
Probab=99.89 E-value=5.1e-23 Score=163.92 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=92.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|+|| ||+.++|-.+ +.|++|+|.+||+++ +...+|++||+|-|+|.+|.. |++||+.|+.. ..+.
T Consensus 500 VGPSGsGK-STiasLL~rf-Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~ 571 (716)
T KOG0058|consen 500 VGPSGSGK-STIASLLLRF-YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATD 571 (716)
T ss_pred ECCCCCCH-HHHHHHHHHh-cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCH
Confidence 38999999 9999999999 999999999999996 457789999999999999998 99999999865 2345
Q ss_pred HHHHhhhccc-hHHHHHHhCCC--ccC-CC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 79 AARKDVFSMR-DCHFLHLSGHL--PRG-TL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~~l~--~~~-~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
++....++++ +|+++..+.-. ..- .+ .+||||||||+| |+.+|+||+
T Consensus 572 e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI 627 (716)
T KOG0058|consen 572 EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI 627 (716)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE
Confidence 5554444433 55677666432 111 12 799999999996 578999987
No 253
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.5e-23 Score=140.81 Aligned_cols=116 Identities=22% Similarity=0.178 Sum_probs=97.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC---CcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG---TEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~---~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+..+.|. +.+ .+|++++++++++. ...++++|+.+|++.+||+++|.+|+.|+..- .+.
T Consensus 34 MGPSGcGK-STLls~~~G~-La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~K 107 (213)
T COG4136 34 MGPSGCGK-STLLSWMIGA-LAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA----TLK 107 (213)
T ss_pred ECCCCccH-HHHHHHHHhh-cccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCc----ccc
Confidence 47999999 9999999999 665 59999999999865 55578999999999999999999999887532 233
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+. ..+++.||+...++ .+||||||-||+ ++.+|+.++ ||
T Consensus 108 G~aRr~~a~----aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 108 GNARRNAAN----AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred cHHHHhhHH----HHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 344455677 89999999988888 999999999996 578999877 76
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=146.27 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=90.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|+++|.++.. ..+++.++|++|++.+|+. |+.+|+.+....+
T Consensus 35 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~ 111 (250)
T PRK14266 35 IGPSGCGK-STFIRTLNRM-NDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH 111 (250)
T ss_pred ECCCCCCH-HHHHHHHHhh-hccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc
Confidence 47899999 9999999998 54 389999999998642 3456789999999998886 9999998764322
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. ++++.+++.+ ..+. .+||+|||||++ ++.+|+|++ ||
T Consensus 112 ~--~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 173 (250)
T PRK14266 112 G--EDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173 (250)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 112233445666 8888888743 2344 899999999995 678999988 77
No 255
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.9e-22 Score=146.04 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=90.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-----cceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-----EGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-----~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+|+ +|+|.++|+++.. ..+++.++|++|++.+++ .|+.||+.+.....
T Consensus 39 ~G~nGsGK-STLl~~l~Gl-~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~ 115 (261)
T PRK14258 39 IGPSGCGK-STFLKCLNRM-NELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV 115 (261)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc
Confidence 47899999 9999999999 7875 8999999988631 345678999999998888 89999998764322
Q ss_pred cCccc-cHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDL-TKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+. ...+..+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|+|++ ||
T Consensus 116 ---~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 116 ---GWRPKLEIDDIVE----SALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred ---CCCcHHHHHHHHH----HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 2233345566 8889998753 2344 899999999996 578999988 77
No 256
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=147.99 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=87.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecC-----hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|+++|+++. ...+++.++|++|++.+++. |+.||+.+.....
T Consensus 42 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~ 118 (264)
T PRK14243 42 IGPSGCGK-STILRCFNRL-NDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN 118 (264)
T ss_pred ECCCCCCH-HHHHHHHHhh-hcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc
Confidence 47899999 9999999999 65 48999999998863 23456789999999988885 9999998765332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... ....+.+. ++++.+++.+ ..+. .+||+||+||++ ++.+|+||+ ||
T Consensus 119 ---~~~-~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 119 ---GYK-GDMDELVE----RSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred ---Ccc-hHHHHHHH----HHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111 12234455 6777777632 2333 899999999995 678999988 77
No 257
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=2.1e-22 Score=162.59 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=97.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh----hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ----FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~----~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|+++.. .. .++.++|++|++.+++.+|+.||+.+.....
T Consensus 40 ~G~nGsGK-STLl~~i~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--- 114 (648)
T PRK10535 40 VGASGSGK-STLMNILGCL-DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--- 114 (648)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---
Confidence 47899999 9999999999 89999999999998643 22 2468999999999999999999998765332
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+.++.+. ++++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 115 ~~~~~~~~~~~~----~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP 171 (648)
T PRK10535 115 GLERKQRLLRAQ----ELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171 (648)
T ss_pred CCCHHHHHHHHH----HHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 233445556677 99999999877777 999999999995 678999988 87
No 258
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-22 Score=144.90 Aligned_cols=117 Identities=20% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--C---CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--G---TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~---~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+ | ++|+|.++|+++.. ..+++.++|++|++.+++ .|+.+|+.+....+
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~ 113 (252)
T PRK14255 37 IGPSGCGK-STYLRTLNRM-NDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLA 113 (252)
T ss_pred ECCCCCCH-HHHHHHHhcc-cccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHc
Confidence 48899999 9999999998 54 4 59999999998631 245678999999999888 69999998765332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ........+.+. +.++.+++. +..+. .+||+|||||++ ++.+|++++ ||
T Consensus 114 ~--~~~~~~~~~~~~----~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 175 (252)
T PRK14255 114 G--VKDKAVLDEAVE----TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175 (252)
T ss_pred C--CCCHHHHHHHHH----HHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 011222234455 777777763 23334 899999999995 678999988 77
No 259
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=6.4e-23 Score=163.84 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=85.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.+++ ...+++.|+||+|++.+|+. |++||+.++.. ..+.
T Consensus 367 vG~sGsGK-STLl~lL~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~d 438 (588)
T PRK13657 367 VGPTGAGK-STLINLLQRV-FDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DATD 438 (588)
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCCH
Confidence 47899999 9999999999 9999999999999864 36678899999999999987 99999987521 1222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++..... ..||||||||++ ++.+|+|++ ||
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp 498 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3222211100 11333333 33322222 679999999996 578999988 77
No 260
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=8.4e-23 Score=161.94 Aligned_cols=118 Identities=20% Similarity=0.114 Sum_probs=88.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++||+|++.+|+. |++||+.++.. ..+.
T Consensus 350 vG~sGsGK-STL~~ll~g~-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~ 421 (544)
T TIGR01842 350 IGPSGSGK-STLARLIVGI-WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADP 421 (544)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCH
Confidence 47899999 9999999999 8999999999999864 35678899999999999987 99999975421 1223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++...+. .+||||||||++ ++.+|++++ ||
T Consensus 422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEp 481 (544)
T TIGR01842 422 EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481 (544)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3322211110 22666666 55544444 889999999996 578999988 76
No 261
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=4.5e-23 Score=164.50 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=86.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++. ...+|+.|+||+|++.+|+. |++||+.++.. ..+.
T Consensus 372 vG~sGsGK-STL~~ll~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~ 443 (574)
T PRK11160 372 LGRTGCGK-STLLQLLTRA-WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NASD 443 (574)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccCH
Confidence 47899999 9999999999 8999999999999864 46678899999999999987 99999987531 1122
Q ss_pred HHHHhhhccchHHHHHHhCCCccC------C-----C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRG------T-----L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~------~-----~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+++.+.. | . .+||||||||++ ++.+|+|++ ||
T Consensus 444 ----~~i~----~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ 502 (574)
T PRK11160 444 ----EALI----EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502 (574)
T ss_pred ----HHHH----HHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2334 555555554321 1 1 779999999996 578999988 76
No 262
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=1.4e-22 Score=173.95 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=95.2
Q ss_pred CCCCCCChHHHHHHHHhCCCC----CCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT----SGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK- 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~----~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~- 74 (127)
-|++|||| |||+|+|+|+ . .|++|+|.++|+++.. ...++.++||+|++.+++.+||+|++.|++.++.+.
T Consensus 93 lG~nGsGK-STLLk~LaG~-~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 170 (1394)
T TIGR00956 93 LGRPGSGC-STLLKTIASN-TDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQN 170 (1394)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCC
Confidence 37899999 9999999998 5 4689999999998643 335667999999999999999999999987654321
Q ss_pred ---cccHHHHHhh-hccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 ---DLTKAARKDV-FSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ---~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+. ++ .+++.+||.+..++ ++|||||||||+ ++.+|+|++ ||
T Consensus 171 ~~~~~~~~~~~~~~~~----~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEP 236 (1394)
T TIGR00956 171 RPDGVSREEYAKHIAD----VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236 (1394)
T ss_pred CCCCCCHHHHHHHHHH----HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCC
Confidence 1233332233 45 78999999877654 679999999995 678999998 87
No 263
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.5e-22 Score=146.68 Aligned_cols=104 Identities=16% Similarity=-0.054 Sum_probs=84.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|. .++|++|+...++.+||.|++.+..... . . .
T Consensus 31 ~G~NGsGK-STLlk~L~G~-~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~-~---~ 92 (246)
T cd03237 31 LGPNGIGK-TTFIKMLAGV-LKPDEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF---Y-T---H 92 (246)
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhc---c-c---c
Confidence 47899999 9999999999 8999999999884 6899999988888889999987643211 0 0 1
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... ++++.+++.+..++ .+||||||||++ |+.+|++++ ||
T Consensus 93 ~~~~~----~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 93 PYFKT----EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred HHHHH----HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12345 78889999876666 999999999995 678999988 87
No 264
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.88 E-value=2.9e-22 Score=145.23 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=88.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-----cCh---hh----hcceEEEEeeCcc--CCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-----RNL---SQ----FRKLSCYIMQDNQ--LHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-----~~~---~~----~r~~ig~v~q~~~--l~~~ltv~e~l~~~ 67 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.+ +.. .. .++.++|++|++. +++.+|+.+|+.+.
T Consensus 35 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~ 112 (253)
T TIGR02323 35 VGESGSGK-STLLGCLAGR-LAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGER 112 (253)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHH
Confidence 47899999 9999999999 89999999999876 421 11 2357999999974 55667899998654
Q ss_pred HhcccCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 68 TALKLGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... ........+.+. ++++.+++. ...+. .+||+|||||++ ++.+|++|+ ||
T Consensus 113 ~~~~~--~~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 113 LMAIG--ARHYGNIRAAAH----DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred HHHhc--ccchHHHHHHHH----HHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 32110 111122345667 899999996 35555 999999999995 688999998 77
No 265
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.88 E-value=1.8e-22 Score=160.49 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ +.|++|+|.++|.+++ ...+++.++||+|++.+|+. |++||+.++..- ..+.
T Consensus 364 vG~sGsGK-STLl~lL~gl-~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~----~~~~ 436 (571)
T TIGR02203 364 VGRSGSGK-STLVNLIPRF-YEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE----QADR 436 (571)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC----CCCH
Confidence 47899999 9999999999 8999999999999853 46678899999999999988 999999876310 1223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .+++++.+ |++..... ..||||||||++ ++.+|+|++ ||
T Consensus 437 ~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp 496 (571)
T TIGR02203 437 AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA 496 (571)
T ss_pred HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3322221100 11333333 23322222 679999999996 567999988 77
No 266
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6e-23 Score=160.52 Aligned_cols=109 Identities=23% Similarity=0.219 Sum_probs=85.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.||||| |||+++|+|+ .+|++|+|.+||.+. +...+|++++||+|++.+|+. |++||+.++.. ..+++
T Consensus 354 G~SGaGK-STLl~lL~G~-~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e 425 (559)
T COG4988 354 GASGAGK-STLLNLLLGF-LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE 425 (559)
T ss_pred CCCCCCH-HHHHHHHhCc-CCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH
Confidence 7899999 9999999999 899999999999885 457789999999999999999 99999988632 12233
Q ss_pred HHHhhhccchHHHHHHhCCCcc------CCC------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPR------GTL------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~------~~~------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+ +. ++++..++.+. .|. ..|||||+||++ ++.++++++ ||
T Consensus 426 ~----i~----~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 426 E----II----AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred H----HH----HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 2 33 55555555332 222 779999999996 456788877 77
No 267
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=7.7e-23 Score=166.06 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=88.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ +.|++|+|+++|.++. ...+|+.++||+|++.+|+. |++||+.++.. ..+.
T Consensus 489 vG~sGsGK-STL~~ll~g~-~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~ 560 (694)
T TIGR01846 489 VGPSGSGK-STLTKLLQRL-YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPF 560 (694)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCH
Confidence 47899999 9999999999 9999999999999864 46778899999999999987 99999987531 1223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++..... .+||||||||++ ++.+|+|++ ||
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp 620 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3322222111 22445544 44433333 889999999995 678999988 76
No 268
>KOG0055|consensus
Probab=99.88 E-value=9e-23 Score=169.92 Aligned_cols=118 Identities=22% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|+||||| ||++++|.++ +.|++|+|.+||.++. .+.+|.+||.|.|+|.+|.. |++||+.|+.. +...
T Consensus 385 VG~SGsGK-ST~i~LL~Rf-ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----dat~ 456 (1228)
T KOG0055|consen 385 VGPSGSGK-STLIQLLARF-YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----DATR 456 (1228)
T ss_pred ECCCCCCH-HHHHHHHHHh-cCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----cccH
Confidence 37999999 9999999999 9999999999999964 36788999999999988876 99999998742 2234
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccC-CC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRG-TL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~-~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+++ +++++..+ |++... ++ .+||||||||+| |+.+|+||+ ||
T Consensus 457 ~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 457 EEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEA 516 (1228)
T ss_pred HHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCc
Confidence 4444333222 33444444 222222 22 779999999996 578999998 64
No 269
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.7e-22 Score=147.98 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .+ |++|+|.++|.++.. ..+++.++|++|++.+++. |++||+.++....
T Consensus 77 vG~nGsGK-STLl~~L~Gl-~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~ 153 (305)
T PRK14264 77 IGPSGCGK-STFLRCLNRM-NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKH 153 (305)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhc
Confidence 47899999 9999999999 65 689999999988642 2456789999999988885 9999998764321
Q ss_pred cC---------cccc-HHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LG---------KDLT-KAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~---------~~~~-~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. .... .....+.+. ++++.+++. +..+. .+||+||+||++ |+.+|+||+ ||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEP 227 (305)
T PRK14264 154 GDINTGLLARLLGRDDKDAEDELVE----RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEP 227 (305)
T ss_pred ccccccccccccccCchHHHHHHHH----HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 0011 122234566 888888874 23344 899999999995 688999998 77
No 270
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-23 Score=146.20 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=101.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| ||||.+++.+ .+.++|+|+++|.++. ...+.+.++..-|+..+...+||+|.+.|+...+. .+....
T Consensus 34 GPNGAGK-STLLS~~sRL-~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~ 110 (252)
T COG4604 34 GPNGAGK-STLLSMMSRL-LKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTK 110 (252)
T ss_pred CCCCccH-HHHHHHHHHh-ccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCch
Confidence 7999999 9999999999 8999999999999963 36677889999999999999999999999865442 344556
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++..++ ++++.++|.+..++ .+||||||||+. ++++.+.++ ||
T Consensus 111 eD~~~I~----~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 111 EDRRIIN----EAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred HHHHHHH----HHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 7778888 99999999999888 999999999995 467888665 76
No 271
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.9e-22 Score=148.80 Aligned_cols=117 Identities=22% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCCCCChHHHHHHHHhCCCCC-C----CcceEEECCEec---Chh---hh-cceEEEEeeCc--cCCCCCCHHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS-G----TEGSITINGHER---NLS---QF-RKLSCYIMQDN--QLHANLTVEEAMNVAT 68 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~-~----~~G~i~i~G~~~---~~~---~~-r~~ig~v~q~~--~l~~~ltv~e~l~~~~ 68 (127)
|.||||| ||+.+.|+|+ ++ | .+|+|.|+|+++ +.+ .+ .+.|+||||++ .|.|-+|+.+.+.-..
T Consensus 38 GESGsGK-S~~~~aim~l-lp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l 115 (316)
T COG0444 38 GESGSGK-SVLAKAIMGL-LPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL 115 (316)
T ss_pred cCCCCCH-HHHHHHHHhc-cCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHH
Confidence 7899999 9999999999 66 3 689999999985 222 22 35799999994 7899999999998776
Q ss_pred hcccCccc-cHHHHHhhhccchHHHHHHhCCCcc---CCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 69 ALKLGKDL-TKAARKDVFSMRDCHFLHLSGHLPR---GTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
..+. .. ...+..+++. ++|+.+|+.+. .+. ++|||||+||| +|+.+|++|+ ||
T Consensus 116 ~~h~--~~~~~~ea~~~a~----~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEP 180 (316)
T COG0444 116 RLHG--KGLSKKEAKERAI----ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180 (316)
T ss_pred HHhh--cchhhHHHHHHHH----HHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCC
Confidence 6542 12 3556677888 99999999753 344 99999999999 4688999999 87
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.3e-22 Score=144.19 Aligned_cols=109 Identities=20% Similarity=0.062 Sum_probs=81.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.++|++|++.+++ .|++||+.+... ...
T Consensus 36 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~ 106 (221)
T cd03244 36 VGRTGSGK-SSLLLALFRL-VELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD 106 (221)
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH
Confidence 48899999 9999999999 89999999999998632 445778999999998876 499999864321 111
Q ss_pred HHHHhhhccchHHHHHHhCC-----------CccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGH-----------LPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l-----------~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .+. ++++.+++ ....+. .+||+||+||++ ++.+|++++ ||
T Consensus 107 ~----~~~----~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 166 (221)
T cd03244 107 E----ELW----QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA 166 (221)
T ss_pred H----HHH----HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 222 33333333 222233 899999999995 688999988 77
No 273
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.4e-22 Score=148.70 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=88.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----CCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----GTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ .. |++|+|.|+|+++.. ..++..++||||++.+|+ .|++||+.|+....
T Consensus 114 vG~~GsGK-STLl~~L~g~-~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~ 190 (329)
T PRK14257 114 IGPSGCGK-STFLRNLNQL-NDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN 190 (329)
T ss_pred ECCCCCCH-HHHHHHHhcc-ccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc
Confidence 47899999 9999999999 65 579999999999742 345778999999999886 69999999764322
Q ss_pred cCccccHH-HHHhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKA-ARKDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... ...+.+. .+++.+++.+ ..+. .+||||||||++ ++.+|+||+ ||
T Consensus 191 ---~~~~~~~~~~~~~----~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 191 ---GINDRKILEKIVE----KSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred ---CCChHHHHHHHHH----HHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 12222 2233455 7788887742 2233 999999999995 678999988 76
No 274
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.88 E-value=1.4e-22 Score=161.35 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=85.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++|+||++.+|+. |++||+.++.. ..+.
T Consensus 372 vG~sGsGK-STLlklL~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~ 443 (576)
T TIGR02204 372 VGPSGAGK-STLFQLLLRF-YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD 443 (576)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH
Confidence 47899999 9999999999 8999999999999864 35678899999999999988 99999987531 1122
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. ..++++.+ |++..... ..||||||||++ ++.+|++++ ||
T Consensus 444 ~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEp 503 (576)
T TIGR02204 444 EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEA 503 (576)
T ss_pred HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCc
Confidence 2221111100 11334433 33322222 789999999996 567999987 77
No 275
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=5.3e-22 Score=141.84 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|++... ..+...+++.+|+.||+.+....+ .......
T Consensus 54 ~G~nGsGK-STLl~~l~G~-~~p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~ 119 (224)
T cd03220 54 IGRNGAGK-STLLRLLAGI-YPPDSGTVTVRGRVSSL---------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEI 119 (224)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEchh---------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence 47899999 9999999999 89999999999987531 111234567899999998865432 2223344
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||+|||||++ ++.+|++++ ||
T Consensus 120 ~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 120 DEKID----EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred HHHHH----HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45667 88999999877766 999999999995 578999988 77
No 276
>KOG0059|consensus
Probab=99.88 E-value=5.8e-23 Score=170.32 Aligned_cols=118 Identities=23% Similarity=0.220 Sum_probs=106.2
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
|-|.+|||| ||++++++|. .+|++|+++++|+++.. ...++.+|||||.+.+++.+|.+|++.+.++++ +.
T Consensus 596 LLG~NGAGK-tT~f~mltG~-~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~ 670 (885)
T KOG0059|consen 596 LLGVNGAGK-TTTFKMLTGE-TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GL 670 (885)
T ss_pred EecCCCCCc-hhhHHHHhCC-ccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CC
Confidence 347899999 9999999999 89999999999998743 347889999999999999999999999999887 66
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
+..+..+.++ .+++.++|.++.++ +.+|||+|+|+ +++++|++++ ||
T Consensus 671 ~~~di~~~v~----~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP 725 (885)
T KOG0059|consen 671 PRSDIGSAIE----KLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP 725 (885)
T ss_pred ChhHHHHHHH----HHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence 7777778888 99999999999988 99999999998 4789999988 76
No 277
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.6e-22 Score=145.57 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=86.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ ..+ ++|+|.++|+++.. ..+++.++|++|++.+++. |+.+|+.++...+
T Consensus 52 iG~nGsGK-STLl~~l~Gl-~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~ 128 (274)
T PRK14265 52 IGPSGCGK-STLLRCFNRM-NDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN 128 (274)
T ss_pred ECCCCCCH-HHHHHHHhcc-cccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc
Confidence 47899999 9999999999 653 69999999998631 3456789999999988875 9999998764332
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... ....+.+. ++++.+++. +..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 129 ---~~~-~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 188 (274)
T PRK14265 129 ---GYK-GNLDELVE----DSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188 (274)
T ss_pred ---Cch-HHHHHHHH----HHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 111 11223455 677777763 33344 899999999995 678999998 77
No 278
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-22 Score=140.19 Aligned_cols=94 Identities=22% Similarity=0.200 Sum_probs=78.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCC---CCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS---GTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~---~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|.+|||| |||+++|+|+ ++ |++|+|+++|.++.. ...++.++|++|++.+++.+||+||+.+....
T Consensus 39 ~G~nGsGK-STLl~~l~G~-~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------ 110 (202)
T cd03233 39 LGRPGSGC-STLLKALANR-TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC------ 110 (202)
T ss_pred ECCCCCCH-HHHHHHhccc-CCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh------
Confidence 47899999 9999999999 78 899999999998643 34567899999999999999999999765321
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .+. ..||+||+||++ ++.+|++++ ||
T Consensus 111 --------------~----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP 145 (202)
T cd03233 111 --------------K----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNS 145 (202)
T ss_pred --------------c----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 1 112 789999999995 678999988 77
No 279
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=2e-22 Score=173.44 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=88.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC------------------------------------------------------Ccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG------------------------------------------------------TEG 27 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~------------------------------------------------------~~G 27 (127)
-|++|||| |||+++|.|+ +.| ++|
T Consensus 1200 VG~SGsGK-STl~~LL~r~-ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1200 VGETGSGK-STVMSLLMRF-YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred ECCCCCCH-HHHHHHHHHh-CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 37899999 9999999999 888 699
Q ss_pred eEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHHhhhccc-hHHHHHHh--CCCcc
Q psy1497 28 SITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMR-DCHFLHLS--GHLPR 101 (127)
Q Consensus 28 ~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~--~l~~~ 101 (127)
+|+++|.++ +...+|+.|+||+|++.+|+. |++||+.++.. ..+.++..+.++.+ ++++++.+ |++..
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence 999999996 447789999999999999976 99999998732 22334433322211 33555544 33322
Q ss_pred CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 102 GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 102 ~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... ..||||||||++ |+.+|+||+ ||
T Consensus 1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 222 789999999996 578999988 65
No 280
>KOG0057|consensus
Probab=99.87 E-value=1.7e-22 Score=156.93 Aligned_cols=116 Identities=19% Similarity=0.114 Sum_probs=87.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| ||++|+|.++ +. ++|+|+|||+++ +.+.+|+-||||||+..+|++ |+.+|+.++.. ..+.+
T Consensus 385 G~nGsGK-STilr~LlrF-~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~e 455 (591)
T KOG0057|consen 385 GSNGSGK-STILRLLLRF-FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDE 455 (591)
T ss_pred CCCCCCH-HHHHHHHHHH-hc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHH
Confidence 7899999 9999999999 77 999999999996 447789999999999999998 99999998752 23344
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccC-CC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRG-TL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~-~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.. .|+.+..+ |..... .+ ..|||||||||+ ++.+|+|++ ||
T Consensus 456 eV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 456 EVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred HHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 433333321 33444444 221111 22 789999999996 578999987 54
No 281
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=3e-22 Score=172.13 Aligned_cols=120 Identities=22% Similarity=0.112 Sum_probs=94.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc----
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK---- 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~---- 74 (127)
-|++|||| |||||+|+|+ ..|+ +|+|.++|+++.....++.++||+|++.+++.+||+|++.|++.++...
T Consensus 197 lGpnGSGK-STLLk~LaG~-l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~ 274 (1470)
T PLN03140 197 LGPPSSGK-TTLLLALAGK-LDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD 274 (1470)
T ss_pred EcCCCCCH-HHHHHHHhCC-CCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCccc
Confidence 37899999 9999999999 7887 9999999998754334678999999999999999999999987654211
Q ss_pred ---cccHHHHH------------------------hhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----
Q psy1497 75 ---DLTKAARK------------------------DVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF---- 116 (127)
Q Consensus 75 ---~~~~~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~---- 116 (127)
.....+.+ ..++ .+++.+||.+..++ ++|||||||||+
T Consensus 275 ~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~a 350 (1470)
T PLN03140 275 LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITD----YTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEM 350 (1470)
T ss_pred chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHH----HHHHHcCCccccCceeCCccccCCCcccceeeeehhh
Confidence 01111110 1234 78999999876543 799999999994
Q ss_pred HhcCCceee--cC
Q psy1497 117 NVLSPLATY--EP 127 (127)
Q Consensus 117 l~~~P~vl~--~~ 127 (127)
++.+|++++ ||
T Consensus 351 L~~~p~vlllDEP 363 (1470)
T PLN03140 351 IVGPTKTLFMDEI 363 (1470)
T ss_pred hcCCCcEEEEeCC
Confidence 688999998 77
No 282
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1e-21 Score=143.40 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEecC-------hhhhcceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHERN-------LSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~~-------~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
-|.+|||| |||+++|+|+ ..| ++|+|.++|.++. ...+++.++|++|++.+++. |+.||+.++..
T Consensus 48 ~G~nGsGK-STLl~~l~Gl-~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~ 124 (265)
T PRK14252 48 IGPSGCGK-STFLRCFNRM-HDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLR 124 (265)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHH
Confidence 47899999 9999999999 664 7999999997653 12456789999999999986 99999987653
Q ss_pred cccCccccH-HHHHhhhccchHHHHHHhCCC----ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 70 LKLGKDLTK-AARKDVFSMRDCHFLHLSGHL----PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.. +... ...++.+. ++++.+++. +..+. .+||+||+||++ ++.+|+|++ ||
T Consensus 125 ~~---~~~~~~~~~~~~~----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 188 (265)
T PRK14252 125 IR---GVKRRSILEERVE----NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188 (265)
T ss_pred Hc---CCChHHHHHHHHH----HHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22 1222 22234566 777888764 23334 899999999995 578999988 77
No 283
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=3.2e-22 Score=159.41 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+++.++|++|++.+|+. |++||+.++.. ..+.
T Consensus 347 vG~sGsGK-STLl~ll~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~ 418 (569)
T PRK10789 347 CGPTGSGK-STLLSLIQRH-FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQ 418 (569)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCH
Confidence 48999999 9999999999 8999999999999863 35678899999999999987 99999987531 1222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .++.+..+ |++...+. .+||||||||++ ++.+|+|++ ||
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 2222111100 11222222 33322222 789999999996 578999988 76
No 284
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.6e-22 Score=141.27 Aligned_cols=117 Identities=23% Similarity=0.186 Sum_probs=87.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
|++|||| |||+++|+|- +.|++|+|.|+|.+++. ......++.|+|+| ..++.||++||+.++.......++.
T Consensus 39 GsNGAGK-STlln~iaG~-l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~ 116 (263)
T COG1101 39 GSNGAGK-STLLNAIAGD-LKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS 116 (263)
T ss_pred cCCCccH-HHHHHHhhCc-cccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccc
Confidence 7899999 9999999999 89999999999999754 33335689999996 6899999999999875421111222
Q ss_pred HH---HHHhhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHHH----hcCCceee
Q psy1497 78 KA---ARKDVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVFN----VLSPLATY 125 (127)
Q Consensus 78 ~~---~~~~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~l----~~~P~vl~ 125 (127)
.. ...+... +.+..+ |+.+.++. .-|||||||.++| ++.|+||+
T Consensus 117 ~~ln~~~~~~f~----~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 117 SALNERRRSSFR----ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred hhhhHHHHHHHH----HHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE
Confidence 21 2223344 555555 44566655 9999999999964 67999987
No 285
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=2e-21 Score=142.13 Aligned_cols=107 Identities=18% Similarity=0.042 Sum_probs=86.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|. +++++|+..+++.+|+.+|+.+..... +....+.
T Consensus 56 iG~NGsGK-STLlk~L~Gl-~~p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~ 120 (264)
T PRK13546 56 VGINGSGK-STLSNIIGGS-LSPTVGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEI 120 (264)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence 48899999 9999999999 8999999999985 456777777888899999998754332 2233444
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. .+++.+++.+..+. .+||+||+||++ ++.+|++|+ ||
T Consensus 121 ~~~~~----~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEP 170 (264)
T PRK13546 121 KAMTP----KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170 (264)
T ss_pred HHHHH----HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 45566 78888899877766 999999999995 578999988 77
No 286
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=8.9e-22 Score=139.87 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=79.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ...++.++|++|++.++ ..|++||+.+....
T Consensus 33 ~G~nGsGK-STLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---- 105 (218)
T cd03290 33 VGQVGCGK-SSLLLAILGE-MQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF---- 105 (218)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC----
Confidence 47899999 9999999999 89999999999987532 12356799999999888 56999999775311
Q ss_pred cccHHHHHhhhccchHHHHHHhCCC-----------ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHL-----------PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... ... ++++.+++. ...+. .+||+|||||++ ++.+|++|+ ||
T Consensus 106 --~~~----~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 167 (218)
T cd03290 106 --NKQ----RYK----AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167 (218)
T ss_pred --CHH----HHH----HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 111 112 233333332 11223 899999999995 578999988 77
No 287
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=138.85 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=93.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
.|++|||| |||||+|+|+ .+|++|+|.++|..+.. +.+++.+-|+--.+.+=+.+|++||+.|...++..
T Consensus 34 ~G~NG~GK-TtLLRilaGL-l~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------ 105 (209)
T COG4133 34 TGPNGAGK-TTLLRILAGL-LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------ 105 (209)
T ss_pred ECCCCCcH-HHHHHHHHcc-cCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------
Confidence 58999999 9999999999 89999999999988754 33567788888889999999999999998776521
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.....+. ++++.+||....|. .+||.|||+||+| +..+++.+ ||
T Consensus 106 ~~~~~i~----~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 106 GNAATIW----EALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred CchhhHH----HHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 1123456 88999999998888 9999999999986 34555544 66
No 288
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=5.7e-22 Score=158.49 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++||+|++.+|+. |++||+.++.. ..+.
T Consensus 367 vG~sGsGK-STL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~ 438 (585)
T TIGR01192 367 VGPTGAGK-TTLINLLQRV-YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATD 438 (585)
T ss_pred ECCCCCCH-HHHHHHHccC-CCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCH
Confidence 48899999 9999999999 8999999999999863 35678899999999999975 99999987531 1223
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .++.+..+ |++..... .+||||||||++ ++.+|++++ ||
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEp 498 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEA 498 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3322222100 11333332 34433333 889999999996 578999988 77
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.87 E-value=1.3e-21 Score=137.09 Aligned_cols=90 Identities=32% Similarity=0.386 Sum_probs=77.3
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ . +|++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+...
T Consensus 41 ~G~nGsGK-StLl~~i~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------- 108 (194)
T cd03213 41 MGPSGAGK-STLLNALAGR-RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK---------- 108 (194)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH----------
Confidence 47899999 9999999999 8 99999999999987655567789999999999999999999865321
Q ss_pred HHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. . +||+||+||++ ++.+|++++ ||
T Consensus 109 ------~----~--------------~LS~G~~qrv~laral~~~p~illlDEP 138 (194)
T cd03213 109 ------L----R--------------GLSGGERKRVSIALELVSNPSLLFLDEP 138 (194)
T ss_pred ------h----c--------------cCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 1 59999999995 678999988 77
No 290
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.87 E-value=3.1e-21 Score=139.69 Aligned_cols=121 Identities=15% Similarity=-0.028 Sum_probs=89.4
Q ss_pred CCCCCCChHHHHHHHHhCCC-CCCCcceEEECCEecCh---hhhc-ceEEEEeeCccCCCCCCHHHHHHHHHhcccC---
Q psy1497 2 RKNFGSDIDKYLLQTSGRIK-TSGTEGSITINGHERNL---SQFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLG--- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~-~~~~~G~i~i~G~~~~~---~~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~--- 73 (127)
-|.+|||| |||+++|+|+. ++|++|+|+++|.++.. ...+ ..++|++|++.+++.+|+.+++.+....+..
T Consensus 39 ~G~nGsGK-STLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (252)
T CHL00131 39 MGPNGSGK-STLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG 117 (252)
T ss_pred ECCCCCCH-HHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccc
Confidence 47899999 99999999972 36899999999998642 2222 2588999999999999999998765432100
Q ss_pred -ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--C-CCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 -KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--L-NLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~-~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+..+.+. ++++.+++. ...+. . .||+||+||++ ++.+|+|++ ||
T Consensus 118 ~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 118 LPELDPLEFLEIIN----EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred cccccHHHHHHHHH----HHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0011122334566 889999996 34555 5 59999999995 678999988 77
No 291
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=5.4e-22 Score=145.89 Aligned_cols=108 Identities=21% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++ ++|+|+|+|.++. ...+++.++|+||++.+|+. |+++|+..... ...
T Consensus 36 vG~nGsGK-STLl~~L~gl-~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~ 105 (275)
T cd03289 36 LGRTGSGK-STLLSAFLRL-LN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD 105 (275)
T ss_pred ECCCCCCH-HHHHHHHhhh-cC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CCH
Confidence 47899999 9999999999 76 8999999999863 34567889999999999986 99999964211 111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC-------------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL-------------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~-------------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+|+.+..+. ..||+|||||++ ++.+|+||+ ||
T Consensus 106 ----~~~~----~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEp 165 (275)
T cd03289 106 ----EEIW----KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 165 (275)
T ss_pred ----HHHH----HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 2345 67777887654433 349999999995 688999988 76
No 292
>KOG0055|consensus
Probab=99.86 E-value=7.3e-22 Score=164.57 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=92.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|+||||| ||.+.+|-.+ +.|++|.|.|||+++ +...+|+++|.|.|+|.||.. |++||+.|+.. ..+.
T Consensus 1022 VG~SGsGK-STvI~LLeRf-Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~ 1093 (1228)
T KOG0055|consen 1022 VGPSGSGK-STVISLLERF-YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSE 1093 (1228)
T ss_pred ECCCCCCH-HHHHHHHHHh-cCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCH
Confidence 38999999 9999999999 999999999999986 457889999999999999998 99999999821 2345
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccC-CC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRG-TL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~-~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
.+..+.++.+ +++++..+ |.+... ++ .+||||||||+| |+.||+||+
T Consensus 1094 ~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL 1149 (1228)
T KOG0055|consen 1094 EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL 1149 (1228)
T ss_pred HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee
Confidence 5555444433 44666554 333322 33 999999999996 578999987
No 293
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.86 E-value=9.5e-22 Score=151.90 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=88.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|+||||| |||.|+|.|. -+|++|.|++||-++ +.+.+-++|||.||+-.+|+. ||.||+.-+.. ..+.+
T Consensus 369 GPSgSGK-STLaR~lvG~-w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~-----~~d~~ 440 (580)
T COG4618 369 GPSGSGK-STLARLLVGI-WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGE-----EADPE 440 (580)
T ss_pred CCCCccH-HHHHHHHHcc-cccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccc-----cCCHH
Confidence 7999999 9999999999 899999999999885 557788999999999999999 99999964431 12222
Q ss_pred HHHhhhccc-hHHHHHHhCCC--ccC-CC-CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLSGHL--PRG-TL-LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~~l~--~~~-~~-~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
...+.+.++ +|+++-.+.-. ... +. ..||||||||++| -++|.+++ ||
T Consensus 441 kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 441 KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 222222222 56777665332 221 22 9999999999975 57999887 87
No 294
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=7.1e-22 Score=143.73 Aligned_cols=113 Identities=18% Similarity=0.045 Sum_probs=84.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.++|++|++.+++. |+++|+..... ...
T Consensus 53 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~ 123 (257)
T cd03288 53 CGRTGSGK-SSLSLAFFRM-VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECK------CTD 123 (257)
T ss_pred ECCCCCCH-HHHHHHHHcc-cCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCC------CCH
Confidence 47899999 9999999999 89999999999998642 4557789999999988875 99998754211 011
Q ss_pred HHHH-----hhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARK-----DVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~-----~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.... ..+. ++++.+ +++...+. .+||+||+||++ ++.+|++|+ ||
T Consensus 124 ~~~~~~l~~~~l~----~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 183 (257)
T cd03288 124 DRLWEALEIAQLK----NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEA 183 (257)
T ss_pred HHHHHHHHHhCcH----HHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111 1223 555555 55554444 899999999995 688999988 77
No 295
>KOG0065|consensus
Probab=99.86 E-value=5.3e-22 Score=165.83 Aligned_cols=121 Identities=24% Similarity=0.305 Sum_probs=107.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.||||| ||||++|+|.... -.+|+|+|+|.+.+...+++.+|||.|++...+.+||+|.|.|.+.+|.+...+.++
T Consensus 823 MG~SGAGK-TTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~e 901 (1391)
T KOG0065|consen 823 MGESGAGK-TTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEE 901 (1391)
T ss_pred hcCCCCch-HHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHH
Confidence 47899999 9999999999322 268999999999877778899999999999999999999999999999888888888
Q ss_pred HHhhhccchHHHHHHhCCCccCCC------CCCCHHHHHHHH----HhcCC-ceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL------LNLSGLWGIGVF----NVLSP-LATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~------~~LSgG~rqrv~----l~~~P-~vl~--~~ 127 (127)
..+.++ ++++.++|.+..+. ..||..||+|+. |+.+| .||| ||
T Consensus 902 k~~yVe----~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 902 KYEYVE----EVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred HHHHHH----HHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 888999 99999999988777 569999999984 78999 6666 87
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=9e-22 Score=154.34 Aligned_cols=109 Identities=16% Similarity=-0.023 Sum_probs=85.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccC--C-C-----CCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQL--H-A-----NLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l--~-~-----~ltv~e~l~~~~~~ 70 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|.++. ....++.++|++|++.+ + + .+|+.+++.+.
T Consensus 35 iG~nGsGK-STLl~~l~G~-~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--- 109 (490)
T PRK10938 35 VGANGSGK-SALARALAGE-LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--- 109 (490)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---
Confidence 37899999 9999999999 8999999999997652 23345679999998643 1 1 46777776431
Q ss_pred ccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 71 KLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 110 --------~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 110 --------VKDPARCE----QLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred --------hhHHHHHH----HHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11234567 89999999876666 999999999995 578999998 87
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=151.34 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=94.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC----cceEEECCEecC---h---hhh-cceEEEEeeCc--cCCCCCCHHHHHHHHHh
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGT----EGSITINGHERN---L---SQF-RKLSCYIMQDN--QLHANLTVEEAMNVATA 69 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~----~G~i~i~G~~~~---~---~~~-r~~ig~v~q~~--~l~~~ltv~e~l~~~~~ 69 (127)
|.||||| ||+.++|.|+ .++. +|+|.++|.++. . ..+ .+.|+||||++ .+.|-+|+.+.+.-...
T Consensus 42 GESGsGK-St~a~~i~gl-l~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~ 119 (539)
T COG1123 42 GESGSGK-STLALALMGL-LPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR 119 (539)
T ss_pred cCCCCCH-HHHHHHHhcc-CCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH
Confidence 7899999 9999999999 6765 899999999742 2 222 36799999995 46677899999887766
Q ss_pred cccCccccHHHHHhhhccchHHHHHHhCCCccC--CC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 70 LKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRG--TL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.+. ....++.++++. ++|+.++|.+.. ++ ++||||||||| +|+.+|++|+ ||
T Consensus 120 ~h~--~~~~~ea~~~a~----elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 120 LHG--KGSRAEARKRAV----ELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred Hhc--cccHHHHHHHHH----HHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 653 234677788888 999999996543 23 99999999999 4789999999 87
No 298
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.2e-21 Score=136.86 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ....++.++|++|++.+++. |++||+.+.. ....
T Consensus 40 ~G~nGsGK-STLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~ 110 (207)
T cd03369 40 VGRTGAGK-STLILALFRF-LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD 110 (207)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH
Confidence 47899999 9999999999 8999999999999863 23456789999999988875 9999996431 1111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. +.++ +. .. .+||+||+||++ ++.+|++++ ||
T Consensus 111 ----~~~~----~~l~---~~---~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 111 ----EEIY----GALR---VS---EGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred ----HHHH----HHhh---cc---CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 1233 4343 21 22 899999999995 578999988 77
No 299
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.7e-22 Score=138.94 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=93.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| |||||.|+|- ..|++|++.++|.+++. .++.++-+.+||+..+-..+||+|.+.++...+. .+....
T Consensus 34 GPNGAGK-STlLk~LsGe-l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~ 110 (259)
T COG4559 34 GPNGAGK-STLLKALSGE-LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPE 110 (259)
T ss_pred CCCCccH-HHHHHHhhCc-cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCch
Confidence 7899999 9999999999 89999999999998643 5566778999999888666799999999865431 112222
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH----------hcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN----------VLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l----------~~~P~vl~--~~ 127 (127)
+..+.++ .+|...++.....+ .+|||||||||.+ ..++++|| ||
T Consensus 111 e~~~i~~----~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEP 168 (259)
T COG4559 111 EDERIAA----QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP 168 (259)
T ss_pred hhHHHHH----HHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCC
Confidence 4455567 89999999888777 9999999999964 23555666 76
No 300
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.86 E-value=1.8e-21 Score=141.42 Aligned_cols=102 Identities=22% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCC--CHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANL--TVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~l--tv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++| +..++|++|++.+++.+ |+.+++.+.. ...
T Consensus 36 ~G~NGsGK-STLl~~i~Gl-~~p~~G~i~~~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~-- 97 (251)
T PRK09544 36 LGPNGAGK-STLVRVVLGL-VAPDEGVIKRNG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK-- 97 (251)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECC--------ccCEEEeccccccccccChhHHHHHhccc------ccc--
Confidence 47899999 9999999999 899999999986 24699999998887764 6777654311 111
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 98 --~~~~~----~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 98 --KEDIL----PALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred --HHHHH----HHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23456 88999999877766 999999999995 678999988 77
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=3.1e-21 Score=153.50 Aligned_cols=111 Identities=20% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh-cc-----cC--
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA-LK-----LG-- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~-~~-----~~-- 73 (127)
-|++|||| |||+++|+|+ ++|++|+|.+++ ...+|||+|++.+++.+|+.||+.++.. ++ ..
T Consensus 39 iG~NGsGK-STLlk~i~G~-~~p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (556)
T PRK11819 39 LGLNGAGK-STLLRIMAGV-DKEFEGEARPAP--------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108 (556)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEecC--------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 47999999 9999999999 899999999874 2469999999999999999999987531 10 00
Q ss_pred ---ccccH----------------------HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCc
Q psy1497 74 ---KDLTK----------------------AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPL 122 (127)
Q Consensus 74 ---~~~~~----------------------~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~ 122 (127)
..... .+..+++. ++++.+++.. .++ .+|||||||||+ ++.+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~ 183 (556)
T PRK11819 109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLE----IAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPD 183 (556)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHH----HHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCC
Confidence 00000 01123455 8899999964 455 999999999995 578999
Q ss_pred eee--cC
Q psy1497 123 ATY--EP 127 (127)
Q Consensus 123 vl~--~~ 127 (127)
||+ ||
T Consensus 184 vlLLDEP 190 (556)
T PRK11819 184 MLLLDEP 190 (556)
T ss_pred EEEEcCC
Confidence 998 87
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.1e-21 Score=136.68 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
.|.+|||| |||+++|+|+ .+|++|+|.++| .|+|++|++.+++ .|++||+.+.... .....
T Consensus 37 ~G~nG~GK-STLl~~i~G~-~~~~~G~i~~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~------~~~~~ 97 (204)
T cd03250 37 VGPVGSGK-SSLLSALLGE-LEKLSGSVSVPG----------SIAYVSQEPWIQN-GTIRENILFGKPF------DEERY 97 (204)
T ss_pred ECCCCCCH-HHHHHHHhCc-CCCCCCeEEEcC----------EEEEEecCchhcc-CcHHHHhccCCCc------CHHHH
Confidence 47899999 9999999999 899999999998 6999999999885 5999999875321 11111
Q ss_pred Hhhhcc-chHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSM-RDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~-~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+. ...+.++.+ ++....+. .+||+|||||++ ++.+|++++ ||
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 111100 000223332 23333333 899999999995 688999988 77
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.2e-21 Score=132.25 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=72.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
.|++|||| |||+++|+|+ ++|++|+|+++|+++.. ...++.++|++|++.+++.+|+.||+.
T Consensus 32 ~G~nGsGK-StLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------- 95 (173)
T cd03230 32 LGPNGAGK-TTLIKIILGL-LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------------- 95 (173)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--------------
Confidence 47899999 9999999999 89999999999998643 345678999999999998888888752
Q ss_pred HHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+||+||++ ++.+|++++ ||
T Consensus 96 ---------------------------LS~G~~qrv~laral~~~p~illlDEP 122 (173)
T cd03230 96 ---------------------------LSGGMKQRLALAQALLHDPELLILDEP 122 (173)
T ss_pred ---------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8999999995 688999988 77
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.8e-21 Score=150.93 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHH-h-ccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVAT-A-LKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~-~-~~~ 72 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.++|++|++ .+|+++|+.+|..+.. . ...
T Consensus 280 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (491)
T PRK10982 280 AGLVGAKR-TDIVETLFGI-REKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN 357 (491)
T ss_pred ecCCCCCH-HHHHHHHcCC-CcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcc
Confidence 47899999 9999999999 89999999999988642 23456799999984 5788899887743321 0 000
Q ss_pred Ccc-ccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKD-LTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+ .......+.+. ++++.+++. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 358 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEP 418 (491)
T PRK10982 358 KVGLLDNSRMKSDTQ----WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEP 418 (491)
T ss_pred cccccCcHHHHHHHH----HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001 12233345667 899999995 44565 999999999995 578999998 87
No 305
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=1.8e-21 Score=168.18 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.|+ +.|++|+|.|||.++. ...+|++|+||||++.+|+. |++||+..+. ..+.+
T Consensus 1269 G~SGSGK-STL~~lL~rl-~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde 1339 (1495)
T PLN03232 1269 GRTGAGK-SSMLNALFRI-VELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA 1339 (1495)
T ss_pred CCCCCCH-HHHHHHHhCC-CcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH
Confidence 7899999 9999999999 9999999999999964 47789999999999999998 9999997642 12233
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.. .+++++.+ |++..... .+||||||||++ |+.+|+||+ ||
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEA 1398 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA 1398 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 222211100 11333332 33322222 789999999995 578999988 65
No 306
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=5.9e-21 Score=137.85 Aligned_cols=120 Identities=17% Similarity=0.041 Sum_probs=86.1
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHh-ccc--
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATA-LKL-- 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~-~~~-- 72 (127)
-|.+|||| |||+++|+|+ . +|++|+|.++|.++.. .. .+..++|++|++.+++.+++.+++.+... +..
T Consensus 33 ~G~nGsGK-STLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (248)
T PRK09580 33 MGPNGSGK-STLSATLAGR-EDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYR 110 (248)
T ss_pred ECCCCCCH-HHHHHHHcCC-ccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhccc
Confidence 47899999 9999999999 5 5899999999987532 22 23579999999999988887776543211 110
Q ss_pred C-ccccHHHHHhhhccchHHHHHHhCCC-ccCCC---CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 G-KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL---LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~---~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .........+.+. ++++.+++. ...+. .+||+|||||++ ++.+|+||+ ||
T Consensus 111 ~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 111 GQEPLDRFDFQDLME----EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred ccccchHHHHHHHHH----HHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 0011122344566 888999985 33444 379999999995 678999998 77
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4e-21 Score=152.01 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=85.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh-cc---------
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA-LK--------- 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~-~~--------- 71 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|. ..++|++|++.+++.+||.||+.++.. .+
T Consensus 33 iG~NGsGK-STLl~~l~Gl-~~p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 102 (530)
T PRK15064 33 IGANGCGK-STFMKILGGD-LEPSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRI 102 (530)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 47999999 9999999999 8999999999873 359999999999999999999986421 00
Q ss_pred --cCc---c--------------ccHHHHHhhhccchHHHHHHhCCCccC-CC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 72 --LGK---D--------------LTKAARKDVFSMRDCHFLHLSGHLPRG-TL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 72 --~~~---~--------------~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
... . ....+.+.++. ++++.+|+.+.. +. .+||||||||++ ++.+|+||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLl 178 (530)
T PRK15064 103 YALPEMSEEDGMKVADLEVKFAEMDGYTAEARAG----ELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILL 178 (530)
T ss_pred hcccccccchHHHHHHHHHHHHhcCchhHHHHHH----HHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 000 0 00001234566 899999997543 33 999999999995 578999988
Q ss_pred --cC
Q psy1497 126 --EP 127 (127)
Q Consensus 126 --~~ 127 (127)
||
T Consensus 179 LDEP 182 (530)
T PRK15064 179 LDEP 182 (530)
T ss_pred EcCC
Confidence 87
No 308
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=5.6e-21 Score=132.56 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCc---cCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~---~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|.+|||| |||+++|+|+ ++|++|+|+++|+++.. ...++.++|++|++ .+++.+|++||+.+..
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~------ 103 (182)
T cd03215 32 AGLVGNGQ-TELAEALFGL-RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS------ 103 (182)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh------
Confidence 47899999 9999999999 89999999999998643 23467899999985 5788899999986531
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ||+|||||++ ++.+|++++ ||
T Consensus 104 ----------------~---------------LS~G~~qrl~la~al~~~p~llllDEP 131 (182)
T cd03215 104 ----------------L---------------LSGGNQQKVVLARWLARDPRVLILDEP 131 (182)
T ss_pred ----------------h---------------cCHHHHHHHHHHHHHccCCCEEEECCC
Confidence 1 9999999995 578999988 77
No 309
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.8e-21 Score=133.56 Aligned_cols=89 Identities=25% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ . +|++|+|.++|+++. ...++.++|++|++.+++.+|++||+.+...
T Consensus 39 ~G~nGsGK-STLl~~l~G~-~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------- 105 (192)
T cd03232 39 MGESGAGK-TTLLDVLAGR-KTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSAL---------- 105 (192)
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHH----------
Confidence 47899999 9999999998 5 489999999999875 4556789999999999999999999876421
Q ss_pred HHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. + +||+||+||++ ++.+|++++ ||
T Consensus 106 ------~----~--------------~LSgGe~qrv~la~al~~~p~vlllDEP 135 (192)
T cd03232 106 ------L----R--------------GLSVEQRKRLTIGVELAAKPSILFLDEP 135 (192)
T ss_pred ------H----h--------------cCCHHHhHHHHHHHHHhcCCcEEEEeCC
Confidence 0 1 59999999995 678999988 77
No 310
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=4.4e-21 Score=166.46 Aligned_cols=116 Identities=18% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.|+ +.|++|+|.|||.++. ...+|++|++|||++.+|.. |++||+..+. ..+++
T Consensus 1272 GrSGSGK-STLl~lL~rl-~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tde 1342 (1622)
T PLN03130 1272 GRTGAGK-SSMLNALFRI-VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDA 1342 (1622)
T ss_pred CCCCCCH-HHHHHHHhCc-CCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHH
Confidence 7899999 9999999999 9999999999999964 47789999999999999998 9999997642 12233
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.. .+++++.+ |++..... .+||||||||++ |+.+|+||+ ||
T Consensus 1343 ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEA 1401 (1622)
T PLN03130 1343 DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401 (1622)
T ss_pred HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 322211100 11333332 33322222 689999999995 678999988 64
No 311
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.2e-21 Score=132.30 Aligned_cols=85 Identities=28% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+.
T Consensus 32 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------- 100 (178)
T cd03229 32 LGPSGSGK-STLLRCIAGL-EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------- 100 (178)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec---------
Confidence 47899999 9999999999 89999999999988632 34567899999999998888998875321
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+||+||++ ++.+|++++ ||
T Consensus 101 ------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 101 ------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 9999999995 688999988 77
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=9.9e-21 Score=150.47 Aligned_cols=111 Identities=19% Similarity=0.057 Sum_probs=83.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC--------
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-------- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-------- 73 (127)
-|.+|||| |||+++|+|+ .+|++|+|.+++ +..|||++|++.+++.+||.||+.++......
T Consensus 37 iG~NGsGK-STLl~~i~G~-~~p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~ 106 (552)
T TIGR03719 37 LGLNGAGK-STLLRIMAGV-DKEFNGEARPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI 106 (552)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 48899999 9999999999 899999999875 24699999999999999999999875321000
Q ss_pred ---ccccHHH----------------------HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCc
Q psy1497 74 ---KDLTKAA----------------------RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPL 122 (127)
Q Consensus 74 ---~~~~~~~----------------------~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~ 122 (127)
......+ ...++. ++++.+++.. .+. .+||||||||++ ++.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~ 181 (552)
T TIGR03719 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLE----IAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPD 181 (552)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHH----HHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 0000000 112344 7788888854 444 999999999995 578999
Q ss_pred eee--cC
Q psy1497 123 ATY--EP 127 (127)
Q Consensus 123 vl~--~~ 127 (127)
+|+ ||
T Consensus 182 lLLLDEP 188 (552)
T TIGR03719 182 MLLLDEP 188 (552)
T ss_pred EEEEcCC
Confidence 988 87
No 313
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=3.2e-21 Score=153.05 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=83.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++|.++. ...+++.++||+|++.+|+. |+++| + . .
T Consensus 355 vG~sGsGK-STL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---~---~--- 419 (547)
T PRK10522 355 IGGNGSGK-STLAMLLTGL-YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---K---P--- 419 (547)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c---C---c---
Confidence 48899999 9999999999 8999999999999864 35678899999999998887 77776 1 0 1
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..++.+. ++++.+++....+. .+||||||||++ ++.+|++|+ ||
T Consensus 420 -~~~~~~~----~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 420 -ANPALVE----KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred -hHHHHHH----HHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 1123455 77778877654321 589999999996 578999988 76
No 314
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=4.9e-21 Score=150.23 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=86.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEecCh----hhhcceEEEEeeCccCCCC--CCHHHHHHHHHhc--cc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHERNL----SQFRKLSCYIMQDNQLHAN--LTVEEAMNVATAL--KL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~--ltv~e~l~~~~~~--~~ 72 (127)
-|++|||| |||+++|+|+ .++ ++|+|+++|+++.. ...++.++|++|++.++.. .++.+++.+.... ..
T Consensus 292 ~G~NGsGK-STLl~~l~G~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
T PRK10938 292 VGPNGAGK-STLLSLITGD-HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGI 369 (490)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccccc
Confidence 47999999 9999999999 765 79999999986521 2346789999998766443 4666665443210 00
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... ...++.+. ++++.+++.+ ..++ .+||||||||++ ++.+|+||+ ||
T Consensus 370 ~~~~~-~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 370 YQAVS-DRQQKLAQ----QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred ccCCC-HHHHHHHH----HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 00111 22345677 9999999986 6666 999999999995 678999998 87
No 315
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.1e-20 Score=130.63 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=93.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhh-cceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQF-RKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~-r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
|++|||| |||.|+|+|+ ++|++|+|+|+|+.+.. ... .++|-++||+++ +.|.+.+.+-+....++. -.+.
T Consensus 46 G~NGSGK-STLakMlaGm-i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~ 121 (267)
T COG4167 46 GENGSGK-STLAKMLAGM-IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLE 121 (267)
T ss_pred ccCCCcH-hHHHHHHhcc-cCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCC
Confidence 6899999 9999999999 89999999999998643 223 467999999964 778888888888776553 2455
Q ss_pred HHHHHhhhccchHHHHHHhCC-CccCCC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 78 KAARKDVFSMRDCHFLHLSGH-LPRGTL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l-~~~~~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
.....+++. +-|..+|| .++.+. .-||.||||||+ |+.+|+|++
T Consensus 122 ~~~R~~~i~----~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII 172 (267)
T COG4167 122 PEQRRKQIF----ETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII 172 (267)
T ss_pred hHHHHHHHH----HHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE
Confidence 566677788 89999999 455666 999999999996 577999987
No 316
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=147.04 Aligned_cols=107 Identities=18% Similarity=0.112 Sum_probs=84.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.+. ++.+...+++.+|++||+.+..... +....+.
T Consensus 56 iGpNGSGK-STLLkiLaGL-l~P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~ 120 (549)
T PRK13545 56 IGLNGSGK-STLSNLIAGV-TMPNKGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKI 120 (549)
T ss_pred EcCCCCCH-HHHHHHHhCC-CCCCceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHH
Confidence 47899999 9999999999 899999999999752 1223455677899999998754332 2334444
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 121 ~e~i~----elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP 170 (549)
T PRK13545 121 KEIIP----EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170 (549)
T ss_pred HHHHH----HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 55677 89999999877666 999999999995 678999988 87
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=1.2e-20 Score=150.89 Aligned_cols=102 Identities=17% Similarity=-0.048 Sum_probs=84.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++ ..++|++|+..+++.+||+|++.+.... ...
T Consensus 371 ~G~NGsGK-STLlk~L~Gl-~~p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~--- 430 (590)
T PRK13409 371 VGPNGIGK-TTFAKLLAGV-LKPDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS--- 430 (590)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---
Confidence 47899999 9999999999 89999999985 1599999998888999999999875321 111
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 431 ~~~~~----~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP 480 (590)
T PRK13409 431 SYYKS----EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480 (590)
T ss_pred HHHHH----HHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12456 89999999876777 999999999996 578999988 87
No 318
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.84 E-value=1.2e-20 Score=134.06 Aligned_cols=104 Identities=15% Similarity=0.019 Sum_probs=77.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE-ECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT-INGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~-i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
.|++|||| |||+++|+|+ ++|++|+|. ++|..+. +.+.+.+++.+|+.||+.+....+ +....+
T Consensus 19 ~G~NGsGK-STLlk~i~Gl-~~~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl~~~~~~~---~~~~~~ 83 (213)
T PRK15177 19 LAAPGSGK-TTLTRLLCGL-DAPDEGDFIGLRGDALP----------LGANSFILPGLTGEENARMMASLY---GLDGDE 83 (213)
T ss_pred ECCCCCCH-HHHHHHHhCC-ccCCCCCEEEecCceec----------cccccccCCcCcHHHHHHHHHHHc---CCCHHH
Confidence 58999999 9999999999 899999997 7765431 224567899999999999876543 222222
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .. .+.+.+++....+. .+||+|||||++ ++.+|++++ ||
T Consensus 84 ~---~~----~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP 131 (213)
T PRK15177 84 F---SH----FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGK 131 (213)
T ss_pred H---HH----HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2 12 33345677665666 999999999995 578999988 76
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.8e-20 Score=149.03 Aligned_cols=107 Identities=19% Similarity=0.064 Sum_probs=84.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ .+|++|+|++++ + ..|||++|++ .+++.+|+.||+.++.... .....
T Consensus 354 ~G~NGsGK-STLl~~l~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~- 419 (552)
T TIGR03719 354 IGPNGAGK-STLFRMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR- 419 (552)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCeEEEECC-c-------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc-
Confidence 48999999 9999999999 899999999854 2 2699999996 5888999999998864322 11111
Q ss_pred HHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+. ++++.+++.. ..++ .+||||||||++ ++.+|++|+ ||
T Consensus 420 -~~~~~----~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 420 -EVPSR----AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred -hHHHH----HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 12355 7889999964 3455 999999999995 678999988 87
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.7e-20 Score=149.29 Aligned_cols=107 Identities=16% Similarity=0.033 Sum_probs=84.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ .+|++|+|.+++ + ..+||++|++ .+++.+||.||+.+..... .....
T Consensus 356 ~G~NGsGK-STLl~~i~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~- 421 (556)
T PRK11819 356 IGPNGAGK-STLFKMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR- 421 (556)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECC-c-------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc-
Confidence 48899999 9999999999 899999999853 2 2599999996 7889999999998764322 11111
Q ss_pred HHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+. .+++.+++.. ..++ .+||||||||++ ++.+|+||+ ||
T Consensus 422 -~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 422 -EIPSR----AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred -HHHHH----HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 12345 7889999963 4455 999999999995 578999998 87
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=149.33 Aligned_cols=104 Identities=17% Similarity=0.048 Sum_probs=83.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCcc--CCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|. ..+||++|++. +++.+|+.+++.+... . .
T Consensus 351 ~G~NGsGK-STLl~~i~G~-~~p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~-----~-~-- 412 (530)
T PRK15064 351 IGENGVGK-TTLLRTLVGE-LEPDSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ-----E-G-- 412 (530)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhcc-----C-C--
Confidence 48999999 9999999999 8999999999873 46999999864 6677999999864210 0 0
Q ss_pred HHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..++.+. ++++.+++. +..+. .+||||||||++ ++.+|+||+ ||
T Consensus 413 ~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 413 DDEQAVR----GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred ccHHHHH----HHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1124566 889999994 55566 999999999995 578999998 87
No 322
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=1.2e-20 Score=163.23 Aligned_cols=116 Identities=18% Similarity=0.049 Sum_probs=84.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.++ +.|++|+|.|||.++. ...+|++|++|||++.+|+. |+++|+.... ..+++
T Consensus 1319 GrTGsGK-STL~~lL~rl-~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde 1389 (1522)
T TIGR00957 1319 GRTGAGK-SSLTLGLFRI-NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE 1389 (1522)
T ss_pred CCCCCCH-HHHHHHHhcC-ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH
Confidence 7899999 9999999999 9999999999999964 47789999999999999998 9999996321 12233
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+..+.. .+++++.+ |++..... .+||||||||++ |+.+|+||+ ||
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa 1448 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 322111100 11233322 33322222 789999999995 578999988 65
No 323
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.84 E-value=1.5e-20 Score=129.51 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|.++. ...+++.++|++|++.+++. |++||+
T Consensus 34 ~G~nGsGK-StLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-------------- 96 (173)
T cd03246 34 IGPSGSGK-STLARLILGL-LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI-------------- 96 (173)
T ss_pred ECCCCCCH-HHHHHHHHhc-cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC--------------
Confidence 47899999 9999999999 8999999999998863 24456789999999887774 787664
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+||+||++ ++.+|++++ ||
T Consensus 97 ----------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 97 ----------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ----------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999995 678999988 77
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.84 E-value=8.5e-21 Score=150.95 Aligned_cols=107 Identities=16% Similarity=0.064 Sum_probs=85.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ +.|++|+|.++|.++.. ..+++.++||+|++.+|+. |+++|.. .
T Consensus 374 vG~sGsGK-STl~~ll~g~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-----~------- 438 (555)
T TIGR01194 374 VGENGCGK-STLAKLFCGL-YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-----E------- 438 (555)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-----c-------
Confidence 47899999 9999999999 89999999999998743 5678889999999999987 7887731 0
Q ss_pred HHHHhhhccchHHHHHHhCCCccCC-------C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGT-------L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~-------~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...++.+. ++++.+++.+..+ . .+||||||||++ ++.+|+|++ ||
T Consensus 439 ~~~~~~~~----~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ 497 (555)
T TIGR01194 439 HASLDNAQ----QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497 (555)
T ss_pred chhHHHHH----HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11233456 7788888865432 2 679999999996 578999988 76
No 325
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=2.1e-20 Score=161.91 Aligned_cols=108 Identities=25% Similarity=0.145 Sum_probs=83.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.|+ +.|++|+|+|||.++. ...+|+.|+||||++.+|+. |+++|+..+. ..+.+
T Consensus 1343 GrTGSGK-STLl~lLlrl-~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde 1413 (1560)
T PTZ00243 1343 GRTGSGK-STLLLTFMRM-VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA 1413 (1560)
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH
Confidence 7899999 9999999999 9999999999999964 47789999999999999998 9999996421 12222
Q ss_pred HHHhhhccchHHHHHHhCCCcc-------CCC------CCCCHHHHHHHH----HhcC-Cceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPR-------GTL------LNLSGLWGIGVF----NVLS-PLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~-------~~~------~~LSgG~rqrv~----l~~~-P~vl~--~~ 127 (127)
.+. ++++..++.+. .|. .+||||||||++ |+.+ |+||+ ||
T Consensus 1414 ----eI~----~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1414 ----EVW----AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred ----HHH----HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 233 44444444321 122 789999999996 4565 89887 65
No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=1.9e-20 Score=129.49 Aligned_cols=84 Identities=20% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|.+|||| |||+++|+|+ .+|++|+|.++|.++.. ..+++.++|++|++.+++ .|++||+
T Consensus 34 ~G~nGsGK-StLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i--------------- 95 (178)
T cd03247 34 LGRSGSGK-STLLQLLTGD-LKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL--------------- 95 (178)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh---------------
Confidence 47899999 9999999999 89999999999997632 345678999999988876 5888776
Q ss_pred HHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .+||+||+||++ ++.+|++++ ||
T Consensus 96 ------~------------------~~LS~G~~qrv~laral~~~p~~lllDEP 125 (178)
T cd03247 96 ------G------------------RRFSGGERQRLALARILLQDAPIVLLDEP 125 (178)
T ss_pred ------c------------------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 1 569999999995 688999988 77
No 327
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=2.5e-20 Score=141.30 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=98.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
|.||||| |||=.+|.++ +++. |+|.|+|+++.. ..+|+++-.|||+| .+.|.|||.+-+.-+...+.+
T Consensus 320 GESGSGK-sTlG~allrL-~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~- 395 (534)
T COG4172 320 GESGSGK-STLGLALLRL-IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP- 395 (534)
T ss_pred ecCCCCc-chHHHHHHhh-cCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-
Confidence 7899999 9999999999 6554 999999999742 34678899999996 589999999999988877643
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+..+++. ++|+.+||+. ..++ +++|||||||+| ++.+|++++ ||
T Consensus 396 ~ls~~eR~~rv~----~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 396 KLSAAERDQRVI----EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred CCCHHHHHHHHH----HHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC
Confidence 467778888888 9999999974 3455 999999999996 578999887 77
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=4.5e-20 Score=134.38 Aligned_cols=111 Identities=14% Similarity=-0.035 Sum_probs=86.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE-----------ECCEecCh--hhhc---ceEEEEeeCccCCCCCCHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT-----------INGHERNL--SQFR---KLSCYIMQDNQLHANLTVEEAMN 65 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~-----------i~G~~~~~--~~~r---~~ig~v~q~~~l~~~ltv~e~l~ 65 (127)
-|++|||| |||+++|+|+ ++|++|+|+ ++|+++.. ...+ ..++|++|...+++. ++.+++.
T Consensus 32 vG~nGsGK-STLlk~l~Gl-~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~ 108 (255)
T cd03236 32 VGPNGIGK-STALKILAGK-LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVG 108 (255)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHH
Confidence 37899999 9999999999 899999996 77877532 1111 247899999888884 7888876
Q ss_pred HHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 66 VATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.... .....+.+. ++++.+++.+..+. .+||+|||||++ ++.+|++++ ||
T Consensus 109 ~~l~--------~~~~~~~~~----~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 166 (255)
T cd03236 109 ELLK--------KKDERGKLD----ELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEP 166 (255)
T ss_pred HHhc--------hhHHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 5421 122334567 89999999876666 999999999995 578999988 77
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=1.5e-20 Score=162.04 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=56.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE-CCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI-NGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i-~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
-|++|||| |||+++|+|+ +.|++|+|++ +|.++ +...+|+.||||+|++.+|+. |++||+.++.
T Consensus 417 vG~SGsGK-STLl~lL~gl-~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~ 484 (1466)
T PTZ00265 417 VGESGCGK-STILKLIERL-YDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSL 484 (1466)
T ss_pred ECCCCCCH-HHHHHHHHHh-ccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcC
Confidence 47899999 9999999999 9999999999 56765 335678899999999999986 9999999863
No 330
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=2.6e-20 Score=150.76 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=81.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.+++ ++.++||+|++.+++. |++||+.++...... ......
T Consensus 484 vG~nGsGK-STLl~lL~Gl-~~~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~ 550 (659)
T TIGR00954 484 CGPNGCGK-SSLFRILGEL-WPVYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLS 550 (659)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCC
Confidence 47899999 9999999999 899999998764 4679999999999888 999999875421100 000001
Q ss_pred HhhhccchHHHHHHhCCCccCC----------C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGT----------L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~----------~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..+ . .+||||||||++ ++.+|++++ ||
T Consensus 551 ~~~i~----~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEp 609 (659)
T TIGR00954 551 DKDLE----QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDEC 609 (659)
T ss_pred HHHHH----HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 23345 6777777754322 2 689999999996 578999988 77
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6.6e-20 Score=126.05 Aligned_cols=81 Identities=28% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
.|++|||| |||+++|+|+ .+|++|+|.++|+++.. ..+++.++|++|++.+++ .|+.||+
T Consensus 34 ~G~nGsGK-stLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-------------- 96 (171)
T cd03228 34 VGPSGSGK-STLLKLLLRL-YDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-------------- 96 (171)
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh--------------
Confidence 47899999 9999999999 89999999999998632 345678999999987665 3666554
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+||+||++ ++.+|++++ ||
T Consensus 97 ----------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 97 ----------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred ----------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999995 578999988 77
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.1e-20 Score=134.99 Aligned_cols=120 Identities=18% Similarity=0.085 Sum_probs=95.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeC--ccCCCCCCHHHHHHHHHh--cccC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQD--NQLHANLTVEEAMNVATA--LKLG 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~--~~l~~~ltv~e~l~~~~~--~~~~ 73 (127)
.|++|||| |||+++++|. .+|++|.+.+.|+.... .++|+.||+|.-. ..+.+..+|+|.+.-+.. ....
T Consensus 63 ~G~NGsGK-TTLL~ll~~~-~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y 140 (257)
T COG1119 63 VGPNGAGK-TTLLSLLTGE-HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140 (257)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccccccccc
Confidence 58999999 9999999999 89999999999998532 6789999999865 455667788887764321 1111
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.....++..+++. .+++.+|+.+..++ .+||-|||||| |++.+|++|+ ||
T Consensus 141 ~~~~~~~~~~~a~----~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP 198 (257)
T COG1119 141 QEDLTAEDLAAAQ----WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEP 198 (257)
T ss_pred ccCCCHHHHHHHH----HHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCc
Confidence 1123455566777 99999999988888 99999999999 5889999998 77
No 333
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=135.80 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=95.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec--ChhhhcceEEEEe-eCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER--NLSQFRKLSCYIM-QDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~--~~~~~r~~ig~v~-q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| ||++|+|+|+ +.|++|.|.++|.+. +..++-+.+++|+ |...++..+.+.+.+.....++ ..+.+
T Consensus 57 GaNGAGK-STtLKmLTGl-l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~ 131 (325)
T COG4586 57 GANGAGK-STTLKMLTGL-LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDD 131 (325)
T ss_pred cCCCCcc-hhhHHHHhCc-cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHH
Confidence 7899999 9999999999 899999999999984 2244556788877 5567777777888877665555 46677
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
+-.++.+ .+.+.++++...+. +.||-|||.|+ +|+++|+||| ||
T Consensus 132 ~F~~r~~----~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 132 EFAERLD----FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred HHHHHHH----HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 7777888 99999999877766 99999999998 4789999999 77
No 334
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=1.2e-19 Score=133.84 Aligned_cols=106 Identities=14% Similarity=0.020 Sum_probs=74.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++|+|+ ++|++|+|.++| .++|++|++.+++. |++||+.+..... .......
T Consensus 69 iG~NGsGK-STLl~~I~Gl-~~p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~~---~~~~~~~ 132 (282)
T cd03291 69 TGSTGSGK-TSLLMLILGE-LEPSEGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSYD---EYRYKSV 132 (282)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECC----------EEEEEeCccccccc-CHHHHhhcccccC---HHHHHHH
Confidence 47899999 9999999999 899999999988 39999999988886 9999998743210 0000000
Q ss_pred Hh--hhccchHHHHHHhCCCc--cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KD--VFSMRDCHFLHLSGHLP--RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~--~~~~~~~~~l~~~~l~~--~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+ .+. +.++.+.... ..+. .+||+|||||++ ++.+|++++ ||
T Consensus 133 l~~~~l~----~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 133 VKACQLE----EDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred HHHhCCH----HHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 01 112 3333332211 1122 789999999995 578999988 77
No 335
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.81 E-value=7.8e-20 Score=147.45 Aligned_cols=107 Identities=18% Similarity=0.076 Sum_probs=83.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|.+|||| |||+++|+|+ .+|++|+|.+ |.++ .|||++|+. .+++.+||.||+.+..... ... .
T Consensus 351 ~G~NGsGK-STLlk~l~G~-~~p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~ 415 (635)
T PRK11147 351 IGPNGCGK-TTLLKLMLGQ-LQADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--G 415 (635)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--c
Confidence 48999999 9999999999 8999999998 5332 599999985 6899999999998753211 011 1
Q ss_pred HHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+. ++++.+++. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 416 ~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP 467 (635)
T PRK11147 416 RPRHVL----GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP 467 (635)
T ss_pred hHHHHH----HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 123466 889999985 34455 999999999996 578999998 87
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.81 E-value=1.5e-19 Score=123.92 Aligned_cols=80 Identities=16% Similarity=0.025 Sum_probs=67.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|. +.++|++|++.++ ..|+.||+.+.
T Consensus 33 ~G~nGsGK-STLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~-------------- 87 (166)
T cd03223 33 TGPSGTGK-SSLFRALAGL-WPWGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP-------------- 87 (166)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc--------------
Confidence 47899999 9999999999 8999999999873 5799999998765 56999998542
Q ss_pred HhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ..+||+|||||++ ++.+|++++ ||
T Consensus 88 ----~-----------------~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 88 ----W-----------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred ----C-----------------CCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0 0669999999995 578999988 77
No 337
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.80 E-value=2.7e-19 Score=125.81 Aligned_cols=88 Identities=19% Similarity=0.056 Sum_probs=70.7
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|.+|||| |||+++|+|+ . +|++|+|.++|+++.. .. .+..++|++|++.+++.+++.+++.
T Consensus 32 ~G~nGsGK-StLl~~l~G~-~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~---------- 99 (200)
T cd03217 32 MGPNGSGK-STLAKTIMGH-PKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR---------- 99 (200)
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----------
Confidence 47899999 9999999999 4 6899999999998643 22 2456999999998888887776550
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... .+||+||+||++ ++.+|++++ ||
T Consensus 100 --------~~~------------------~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 100 --------YVN------------------EGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred --------hcc------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 469999999995 678999988 77
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.80 E-value=2.2e-19 Score=155.23 Aligned_cols=107 Identities=22% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.|+ +. ++|+|+|||.++. ...+|++++||||++.+|+. |+++|+.... ..+.+
T Consensus 1252 GrSGsGK-STLl~lL~rl-~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~tde 1321 (1490)
T TIGR01271 1252 GRTGSGK-STLLSALLRL-LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSDE 1321 (1490)
T ss_pred CCCCCCH-HHHHHHHhhh-cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCHH
Confidence 7899999 9999999999 76 8999999999964 46789999999999999998 9999995432 11222
Q ss_pred HHHhhhccchHHHHHHhCCCcc-------CCC------CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPR-------GTL------LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~-------~~~------~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+. ++++.+++.+. +|. .+||+|||||++ |+.+|+||+ ||
T Consensus 1322 ----ei~----~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEa 1380 (1490)
T TIGR01271 1322 ----EIW----KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380 (1490)
T ss_pred ----HHH----HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 333 55555554321 122 589999999995 678999988 65
No 339
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.80 E-value=7.8e-20 Score=126.64 Aligned_cols=83 Identities=23% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.++.. ..++..++|++|
T Consensus 31 ~G~nGsGK-StLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------------------------- 80 (180)
T cd03214 31 LGPNGAGK-STLLKTLAGL-LKPSSGEILLDGKDLASLSPKELARKIAYVPQ---------------------------- 80 (180)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH----------------------------
Confidence 47899999 9999999999 89999999999998632 334556888887
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++.+++.+..+. .+||+||+||++ ++.+|++++ ||
T Consensus 81 -------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 81 -------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred -------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1223333333333 889999999995 678999988 77
No 340
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.6e-19 Score=125.72 Aligned_cols=119 Identities=18% Similarity=0.020 Sum_probs=95.8
Q ss_pred CCCCCChHHHHHHHHhCCC-CCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc-cc
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-TSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK-DL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~ 76 (127)
|++|||| |||.++|+|.. +..++|+|.++|+++.. .++|..|...+|.|.-+|..++.+.+..+....... ..
T Consensus 37 GPNGsGK-STLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~ 115 (251)
T COG0396 37 GPNGSGK-STLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115 (251)
T ss_pred CCCCCCH-HHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc
Confidence 7999999 99999999993 45799999999999632 567889999999999999999999998776532111 11
Q ss_pred cHHHHHhhhccchHHHHHHhCCCc-cCCC---CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLP-RGTL---LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~---~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+....++ +.++.+++++ ++++ ..+|||||+|.. ++.+|++.+ ||
T Consensus 116 -~~~~~~~~~----e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 116 -LPEFIKELK----EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred -cHHHHHHHH----HHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 234456677 8899999976 5666 999999999996 477999876 65
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=99.79 E-value=1.6e-19 Score=144.60 Aligned_cols=108 Identities=14% Similarity=-0.033 Sum_probs=82.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE-----------ECCEecCh--hh---hcceEEEEeeCccCCCCC---CHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT-----------INGHERNL--SQ---FRKLSCYIMQDNQLHANL---TVEE 62 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~-----------i~G~~~~~--~~---~r~~ig~v~q~~~l~~~l---tv~e 62 (127)
-|++|||| |||+|+|+|+ ++|++|+|. ++|.++.. .. .+..+++.+|....+|.+ ||.|
T Consensus 105 vG~NGaGK-STLlkiL~G~-l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e 182 (590)
T PRK13409 105 LGPNGIGK-TTAVKILSGE-LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE 182 (590)
T ss_pred ECCCCCCH-HHHHHHHhCC-ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHH
Confidence 37899999 9999999999 899999997 89988632 11 123466667654444433 8998
Q ss_pred HHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 63 AMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 63 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++... ...+.++ ++++.+++....++ .+|||||+||++ ++.+|+|++ ||
T Consensus 183 ~l~~~------------~~~~~~~----~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEP 239 (590)
T PRK13409 183 LLKKV------------DERGKLD----EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239 (590)
T ss_pred HHHhh------------hHHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 87531 1223566 89999999877777 999999999996 578999988 87
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=5.9e-19 Score=133.89 Aligned_cols=118 Identities=22% Similarity=0.165 Sum_probs=95.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-----CcceEEECCEec---Chhh---hc-ceEEEEeeCc--cCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-----TEGSITINGHER---NLSQ---FR-KLSCYIMQDN--QLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-----~~G~i~i~G~~~---~~~~---~r-~~ig~v~q~~--~l~~~ltv~e~l~~~ 67 (127)
-|.||||| |...+.++++ ++. -+|+|.|+|.++ +..+ +| .+|+++||+| .+.|-.|+...+.-.
T Consensus 42 VGESGSGK-SvTa~sim~L-Lp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~ 119 (534)
T COG4172 42 VGESGSGK-SVTALSILGL-LPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119 (534)
T ss_pred EecCCCCc-cHHHHHHHHh-cCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHH
Confidence 37899999 9999999999 542 488999999995 2233 33 4799999996 688888999988877
Q ss_pred HhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC-----CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 68 TALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL-----LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.+++. +++..+.++++. ++|+.+|+.+...+ ++||||||||| |++.+|++|+ ||
T Consensus 120 l~~Hr--g~~~~~Ar~r~l----elL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEP 184 (534)
T COG4172 120 LRLHR--GLSRAAARARAL----ELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184 (534)
T ss_pred HHHHh--cccHHHHHHHHH----HHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCC
Confidence 76653 567788888888 99999999765433 99999999999 4688999999 77
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=6.2e-19 Score=125.99 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=88.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEee-CccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQ-DNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q-~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
|.+|||| |||+|+|+|. ++|++|+|.++|+-.. +.. ...+.|.+|.+||+.+...+. ++...+.
T Consensus 60 G~NGaGK-STLlkliaGi-~~Pt~G~v~v~G~v~~----------li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei 124 (249)
T COG1134 60 GHNGAGK-STLLKLIAGI-YKPTSGKVKVTGKVAP----------LIELGAGFDPELTGRENIYLRGLIL---GLTRKEI 124 (249)
T ss_pred CCCCCcH-HHHHHHHhCc-cCCCCceEEEcceEeh----------hhhcccCCCcccchHHHHHHHHHHh---CccHHHH
Confidence 6899999 9999999999 9999999999986432 111 234668899999999887665 6788889
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
++.++ ++.+..+|.++.+. .++|.||+-|++ +..+|+||+
T Consensus 125 ~~~~~----eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILl 170 (249)
T COG1134 125 DEKVD----EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILL 170 (249)
T ss_pred HHHHH----HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEE
Confidence 99999 99999999999988 999999999996 467999987
No 344
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=5.8e-19 Score=127.93 Aligned_cols=82 Identities=21% Similarity=0.122 Sum_probs=68.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|.||||| |||-|+|.|+ +.|++|+|+++|+++.... ..+..
T Consensus 46 GESG~GK-STlgr~i~~L-~~pt~G~i~f~g~~i~~~~-------------------------------------~~~~~ 86 (268)
T COG4608 46 GESGCGK-STLGRLILGL-EEPTSGEILFEGKDITKLS-------------------------------------KEERR 86 (268)
T ss_pred ecCCCCH-HHHHHHHHcC-cCCCCceEEEcCcchhhcc-------------------------------------hhHHH
Confidence 7899999 9999999999 8999999999999853211 23344
Q ss_pred hhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++. ++|+.+|+.+ .+++ ++|||||+||++ |+.+|++++ ||
T Consensus 87 ~~v~----elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 87 ERVL----ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred HHHH----HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 5677 9999999964 5566 999999999994 788999998 65
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=3.2e-18 Score=148.15 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=76.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++| .++||+|++.+++. |++||+.|+... .....
T Consensus 458 ~G~~GsGK-STLl~~l~G~-~~~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~~~~ 518 (1490)
T TIGR01271 458 AGSTGSGK-SSLLMMIMGE-LEPSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSY------DEYRY 518 (1490)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECC----------EEEEEeCCCccCCc-cHHHHHHhcccc------chHHH
Confidence 47899999 9999999999 899999999988 49999999999986 999999987421 11111
Q ss_pred HhhhccchH---HHHHHhCCCc---cCCC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDC---HFLHLSGHLP---RGTL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~---~~l~~~~l~~---~~~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.++ .| +.++.+...+ .... .+||||||||++ ++.+|+|++ ||
T Consensus 519 ~~~~~--~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep 575 (1490)
T TIGR01271 519 TSVIK--ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 575 (1490)
T ss_pred HHHHH--HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11111 11 2333332221 1122 899999999996 578999988 76
No 346
>KOG0056|consensus
Probab=99.77 E-value=1.5e-19 Score=140.01 Aligned_cols=114 Identities=18% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|+|| ||++|+|..+ +.-.+|.|.|||+++.. ..+|..||.|||+..+|++ |+..|+.++.. ..+.
T Consensus 570 VG~SGaGK-STimRlLfRf-fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~Asn 641 (790)
T KOG0056|consen 570 VGPSGAGK-STIMRLLFRF-FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----SASN 641 (790)
T ss_pred ECCCCCch-hHHHHHHHHH-hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCC-----CCCh
Confidence 48999999 9999999999 89999999999999754 6689999999999999998 99999987632 2234
Q ss_pred HHHHhhhccc-hHHHHHHhCCCccC-----CC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 79 AARKDVFSMR-DCHFLHLSGHLPRG-----TL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~~l~~~~-----~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
++..+.++++ +|+-+ +++.+-. .+ -+|||||||||| |+..|.+++
T Consensus 642 eevyaAAkAA~IHdrI--l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl 697 (790)
T KOG0056|consen 642 EEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL 697 (790)
T ss_pred HHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE
Confidence 4444444322 22322 3333221 12 789999999997 467999876
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=2.3e-18 Score=149.30 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++| .++||+|++.+++ .|++||+.++... ..+..
T Consensus 670 vG~~GsGK-STLl~~l~g~-~~~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~ 730 (1522)
T TIGR00957 670 VGQVGCGK-SSLLSALLAE-MDKVEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NEKYY 730 (1522)
T ss_pred ECCCCCCH-HHHHHHHhCC-CccCCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CHHHH
Confidence 37899999 9999999999 899999999987 4999999999876 5999999986421 11211
Q ss_pred HhhhccchHHHHHHhCCCcc-----CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPR-----GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~-----~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++.++ .|.+.+.++..+. .+. .+||||||||++ ++.+|+|++ ||
T Consensus 731 ~~~~~--~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 731 QQVLE--ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred HHHHH--HhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11111 1233334433221 122 899999999996 578999988 76
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9e-19 Score=136.22 Aligned_cols=109 Identities=23% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+.+|+|. +.|++|+|.++|.++. ...+|+.|++++|...+|.. |+++|+.++.. ..+++
T Consensus 371 G~SGsGK-STllqLl~~~-~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~AsDE 442 (573)
T COG4987 371 GRSGSGK-STLLQLLAGA-WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-----DASDE 442 (573)
T ss_pred CCCCCCH-HHHHHHHHhc-cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC-----CCCHH
Confidence 7899999 9999999999 8999999999999853 35578899999999999998 99999988642 22222
Q ss_pred HHHhhhccchHHHHHHhCCC-----------ccCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHL-----------PRGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~-----------~~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.+. ++++.+||. .+.+. ..|||||+||++| .+|.++++ ||
T Consensus 443 ----el~----~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEP 501 (573)
T COG4987 443 ----ELW----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP 501 (573)
T ss_pred ----HHH----HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCC
Confidence 233 455555553 23333 8999999999974 56888766 77
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4e-18 Score=137.67 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=79.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ .+|++|+|.+++. ..+||++|+. .+.+..|+.+++.. .. ..
T Consensus 344 ~G~NGsGK-STLlk~l~G~-~~p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~ 404 (638)
T PRK10636 344 LGRNGAGK-STLIKLLAGE-LAPVSGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQ 404 (638)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC------ch
Confidence 47899999 9999999999 8999999999641 2699999974 45666777776531 11 11
Q ss_pred HHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+. ++++.+++.. ..++ .+|||||||||+ ++.+|+||+ ||
T Consensus 405 ~~~~~~~----~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 405 ELEQKLR----DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred hhHHHHH----HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2234567 8999999953 4555 999999999996 578999998 87
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=6.3e-18 Score=137.84 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=77.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.+++ +..|||++|++ ++.+++.++..+......+ ...
T Consensus 541 vG~NGsGK-STLLk~L~Gl-l~p~~G~I~~~~--------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~---- 603 (718)
T PLN03073 541 VGPNGIGK-STILKLISGE-LQPSSGTVFRSA--------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP---- 603 (718)
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCceEEECC--------ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----
Confidence 47899999 9999999999 899999999865 24699999985 3445666664332211110 111
Q ss_pred HhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. .+++.+++.. ..++ .+||||||||++ ++.+|++|+ ||
T Consensus 604 ~~~i~----~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 604 EQKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred HHHHH----HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 24566 8999999973 4455 999999999995 578999998 87
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.7e-18 Score=135.99 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=76.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh------------
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA------------ 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~------------ 69 (127)
-|.+|||| |||+|+|+|+ +.|++|+|.++|.. .++|++|+...+ ..++.+++.-...
T Consensus 33 vG~NGsGK-STLLkiL~G~-~~pd~G~I~~~~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~ 101 (638)
T PRK10636 33 VGKNGCGK-STLLALLKNE-ISADGGSYTFPGNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDA 101 (638)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEecCCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHH
Confidence 48899999 9999999999 89999999998742 378888864333 2455554431100
Q ss_pred -----------cccC-ccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 70 -----------LKLG-KDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 70 -----------~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+... ..........++. .+++.+|+. +..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEP 176 (638)
T PRK10636 102 NERNDGHAIATIHGKLDAIDAWTIRSRAA----SLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176 (638)
T ss_pred hccCCHHHHHHHHHHHHhcCCcchHHHHH----HHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 0000 0000011234566 899999996 45565 999999999996 577999998 87
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=5.3e-18 Score=147.49 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc-ceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE-GSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~-G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|.|. ++|++ |+|.+ +..|+||+|++.+++. |++||+.|+... +.++
T Consensus 649 vG~sGSGK-STLl~lLlG~-~~~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~------d~e~ 709 (1622)
T PLN03130 649 VGSTGEGK-TSLISAMLGE-LPPRSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF------DPER 709 (1622)
T ss_pred ECCCCCCH-HHHHHHHHHh-hccCCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc------cHHH
Confidence 37899999 9999999999 89999 89974 5579999999999987 999999987421 1222
Q ss_pred HHhhhccc-hHHHHHHh--CCCccC-CC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMR-DCHFLHLS--GHLPRG-TL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~-~~~~l~~~--~l~~~~-~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+++. .++.++.+ |..... .. .+||||||||++ +..+|+|++ ||
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 11111100 00112222 111111 12 789999999996 567999887 65
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=5.7e-18 Score=146.65 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=73.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|.|. ++|++|.+. .++..|+||+|++.+|+. |++||+.|+.. .+.++.
T Consensus 649 vG~sGSGK-STLl~lLlG~-~~~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~e~~ 710 (1495)
T PLN03232 649 VGGTGEGK-TSLISAMLGE-LSHAETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FESERY 710 (1495)
T ss_pred ECCCCCcH-HHHHHHHhCC-CcccCCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCc------cCHHHH
Confidence 37899999 9999999999 899998763 246789999999999987 99999998742 122222
Q ss_pred Hhhhccc-hHHHHHHh--CCCc-cCCC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMR-DCHFLHLS--GHLP-RGTL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~-~~~~l~~~--~l~~-~~~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+++. .++.++.+ |.+. .-.. .+||||||||++ +..+|+|++ ||
T Consensus 711 ~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2222100 00112222 1111 1111 689999999996 567999987 66
No 354
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.8e-18 Score=118.40 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=91.8
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe--cC-----hh---h-hcceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE--RN-----LS---Q-FRKLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~--~~-----~~---~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
+-|+||||| ||||++|.+- +.|++|+|++.... ++ +. . .++.||||.|.-...|..+..+.++-...
T Consensus 42 L~G~SG~GK-Stllr~LYaN-Y~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll 119 (235)
T COG4778 42 LHGPSGSGK-STLLRSLYAN-YLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL 119 (235)
T ss_pred eeCCCCCcH-HHHHHHHHhc-cCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH
Confidence 358999999 9999999999 99999999986543 21 11 2 34569999999888999888888776554
Q ss_pred cccCccccHHHHHhhhccchHHHHHHhCCCccCCC---CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 70 LKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL---LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
-+ +.+.+....++. +++.++++.+.+.. .++||||||||.| +.+=+||+ ||
T Consensus 120 ~~---gv~~~~a~~~a~----~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEP 179 (235)
T COG4778 120 AR---GVPREVARAKAA----DLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEP 179 (235)
T ss_pred Hc---CCCHHHHHHHHH----HHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCC
Confidence 33 567777888888 99999999876655 9999999999964 34444444 66
No 355
>PTZ00243 ABC transporter; Provisional
Probab=99.72 E-value=1.9e-17 Score=143.74 Aligned_cols=107 Identities=20% Similarity=0.041 Sum_probs=76.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.+. ..|+|++|++.+++ .|++||+.++... .....
T Consensus 692 iG~nGsGK-STLL~~i~G~-~~~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~------~~~~~ 752 (1560)
T PTZ00243 692 LGATGSGK-STLLQSLLSQ-FEISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDEE------DAARL 752 (1560)
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCChh------hHHHH
Confidence 37899999 9999999999 89999999863 46999999999875 5999999885321 11111
Q ss_pred Hhhhcc-chHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSM-RDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~-~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.++. ..++.++.+ |+....+. .+||||||||++ ++.+|+|++ ||
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 111110 011455555 55444334 899999999996 578999988 76
No 356
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=3.7e-17 Score=111.73 Aligned_cols=68 Identities=19% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
.|.+|||| |||+++|+|+ .+|++|+|.++|+++.. ...++.++|++|
T Consensus 32 ~G~nGsGK-STLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--------------------------- 82 (163)
T cd03216 32 LGENGAGK-STLMKILSGL-YKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ--------------------------- 82 (163)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---------------------------
Confidence 47899999 9999999999 89999999999988642 123456777777
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+||+||++ ++.+|++++ ||
T Consensus 83 -----------------------------LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 83 -----------------------------LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred -----------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999995 678999988 77
No 357
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.7e-18 Score=128.84 Aligned_cols=115 Identities=22% Similarity=0.181 Sum_probs=85.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
+++|+|| ||++++|..+ +.+.+|.|.++|+++.. ..+|+.||.|||+..+|++ |...|+.++.. .....
T Consensus 296 g~SG~gK-sTI~rllfRF-yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~e 367 (497)
T COG5265 296 GESGAGK-STILRLLFRF-YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAE 367 (497)
T ss_pred eCCCCcH-HHHHHHHHHH-hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHH
Confidence 6899999 9999999999 99999999999999743 6678999999999999998 99999988643 22333
Q ss_pred HHHhhhccc-hHHHHHHh--CCCcc-CCC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPR-GTL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~-~~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
+....++++ ++++++.+ |++.. ..+ -.|||||||||+ |+.+|+|++
T Consensus 368 ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 333222211 22444443 22111 112 789999999997 578999987
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=7.4e-17 Score=130.25 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=73.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH--------------
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA-------------- 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~-------------- 67 (127)
-|++|||| |||+++|+|+ .+|++|+|.++|.. .++|++|.+......++.+++..+
T Consensus 35 vG~NGsGK-STLLriiaG~-~~p~~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 104 (635)
T PRK11147 35 VGRNGAGK-STLMKILNGE-VLLDDGRIIYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDI 104 (635)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCeEEEeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence 48899999 9999999999 89999999998631 256666654333334555543211
Q ss_pred ----------------Hhccc-CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCcee
Q psy1497 68 ----------------TALKL-GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLAT 124 (127)
Q Consensus 68 ----------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl 124 (127)
..+.. ...........++. ++++.+|+.. ++ .+|||||||||+ |+.+|+||
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~l~~lgl~~--~~~~~~LSgGekqRv~LAraL~~~P~lL 178 (635)
T PRK11147 105 SHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN----EVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVL 178 (635)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH----HHHHhCCCCC--CCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 00000 00000011234566 8999999963 44 999999999996 57899999
Q ss_pred e--cC
Q psy1497 125 Y--EP 127 (127)
Q Consensus 125 ~--~~ 127 (127)
+ ||
T Consensus 179 LLDEP 183 (635)
T PRK11147 179 LLDEP 183 (635)
T ss_pred EEcCC
Confidence 8 87
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.70 E-value=6.2e-17 Score=127.92 Aligned_cols=110 Identities=19% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC--c---c--
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG--K---D-- 75 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~--~---~-- 75 (127)
|.+|||| |||||+|+|. ..|++|+|...+- ..++|++|++.+++..||.+.+..+..-... . .
T Consensus 36 G~NGaGK-STLLkilaG~-~~~~~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~ 105 (530)
T COG0488 36 GRNGAGK-STLLKILAGE-LEPDSGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY 105 (530)
T ss_pred CCCCCCH-HHHHHHHcCC-CcCCCCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6799999 9999999999 8999999987542 3599999999999999999988764321000 0 0
Q ss_pred --------------------ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 --------------------LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 --------------------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.+.++. .++..+|+... ++ ++||||||.||+ |..+|+||+ ||
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~----~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEP 180 (530)
T COG0488 106 ALLADPDDELLAELEALLEELDGWTLEARAE----EALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180 (530)
T ss_pred HhcccchhHHHHHHHHHHHhhcccchHHHHH----HHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00011123444 78888888765 45 999999999996 567999998 88
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.9e-17 Score=113.09 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=78.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe---c-----Ch----hhhcceEEEEeeCcc--CCC----CCCHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE---R-----NL----SQFRKLSCYIMQDNQ--LHA----NLTVEEAM 64 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~---~-----~~----~~~r~~ig~v~q~~~--l~~----~ltv~e~l 64 (127)
|.+|||| |||++||++. +.|++|+|.+.-.+ . .. .-.|...|+|.|+|. +-. .-++.|-+
T Consensus 39 GESGSGK-tTLL~~is~r-l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl 116 (258)
T COG4107 39 GESGSGK-TTLLKCISGR-LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL 116 (258)
T ss_pred ecCCCcH-HhHHHHHhcc-cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhH
Confidence 6899999 9999999999 89999999985432 1 11 123567999999964 333 23344433
Q ss_pred HHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccC--CC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 65 NVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRG--TL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.... .....+++.+. +|++.+.++... |. ..+|||||||+. |+..|+++| ||
T Consensus 117 ma~G~------RHYG~iR~~a~----~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP 178 (258)
T COG4107 117 MAIGA------RHYGNIRAEAQ----DWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178 (258)
T ss_pred Hhhhh------hhhhhHHHHHH----HHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC
Confidence 32111 11233455566 999999986432 33 999999999995 578999998 77
No 361
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=3.8e-16 Score=108.24 Aligned_cols=62 Identities=16% Similarity=-0.029 Sum_probs=52.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.+ ++|++|+..
T Consensus 31 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~---------i~~~~q~~~---------------------------- 71 (177)
T cd03222 31 VGPNGTGK-TTAVKILAGQ-LIPNGDNDEWDGIT---------PVYKPQYID---------------------------- 71 (177)
T ss_pred ECCCCChH-HHHHHHHHcC-CCCCCcEEEECCEE---------EEEEcccCC----------------------------
Confidence 47899999 9999999999 89999999999853 667665321
Q ss_pred HhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
||+|||||++ ++.+|++++ ||
T Consensus 72 -------------------------LSgGq~qrv~laral~~~p~lllLDEP 98 (177)
T cd03222 72 -------------------------LSGGELQRVAIAAALLRNATFYLFDEP 98 (177)
T ss_pred -------------------------CCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999995 578999988 77
No 362
>KOG0054|consensus
Probab=99.66 E-value=3.4e-16 Score=133.05 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|+-|||| |+||.+|.|- .+..+|+|.++|. ++||+|.+.+++. ||+||+.|+..+ .++.-+
T Consensus 554 G~vGsGK-SSLL~AiLGE-m~~~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~------d~~rY~ 614 (1381)
T KOG0054|consen 554 GPVGSGK-SSLLSAILGE-MPKLSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY------DEERYD 614 (1381)
T ss_pred CCCCCCH-HHHHHHHhcC-cccccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc------cHHHHH
Confidence 7889999 9999999999 8999999999886 8999999999998 999999998643 222222
Q ss_pred hhhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHHHh----cCCceee
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVFNV----LSPLATY 125 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~l~----~~P~vl~ 125 (127)
+.++ +|.+-+.+.+-+..|. -+||||||||++|| .+++|.+
T Consensus 615 ~Vi~--aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 615 KVIK--ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred HHHH--HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEE
Confidence 2233 3444444444333333 89999999999764 5888755
No 363
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=118.74 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=93.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeC---ccCCCCCCHHHHHHHHHhcccC-c
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQD---NQLHANLTVEEAMNVATALKLG-K 74 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~---~~l~~~ltv~e~l~~~~~~~~~-~ 74 (127)
|--|||+ |=|+++|.|. .++++|+|.++|+++.. ...+..|+|||++ ..++..+++.+|+.+....+.. .
T Consensus 292 GLvGaGR-TEl~~~lfG~-~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~ 369 (500)
T COG1129 292 GLVGAGR-TELARALFGA-RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRR 369 (500)
T ss_pred ccccCCH-HHHHHHHhCC-CcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccc
Confidence 4459999 9999999999 78899999999998632 4567899999987 5799999999999887221111 1
Q ss_pred -cccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 -DLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.....+.++ ++.+.+++... .+. .+||||.||||. |+.+|+||+ ||
T Consensus 370 ~~i~~~~e~~~~~----~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEP 428 (500)
T COG1129 370 GLIDRRKERALAE----RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEP 428 (500)
T ss_pred cccChHHHHHHHH----HHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCC
Confidence 234444555677 89999999533 233 999999999996 678999988 87
No 364
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.63 E-value=1.4e-15 Score=102.01 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEee
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQ 50 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q 50 (127)
.|++|||| |||+++|+|+ .+|++|+|+++|. ..++|++|
T Consensus 32 ~G~nGsGK-StLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~~ 70 (144)
T cd03221 32 VGRNGAGK-STLLKLIAGE-LEPDEGIVTWGST--------VKIGYFEQ 70 (144)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCceEEEECCe--------EEEEEEcc
Confidence 47899999 9999999999 8999999999984 36788877
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.61 E-value=4.8e-16 Score=109.32 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=65.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---------cceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---------EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---------~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|++|||| |||+++|+|+ ..+. .|++.+.|++......++.++|++|++..+ +. .
T Consensus 28 ~G~nGsGK-Stll~al~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~-- 91 (197)
T cd03278 28 VGPNGSGK-SNIIDAIRWV-LGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--I-- 91 (197)
T ss_pred ECCCCCCH-HHHHHHHHHH-hccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--E--
Confidence 48999999 9999999998 6544 346777777654333457899999998776 11 0
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHh--------cCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNV--------LSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~--------~~P~vl~--~~ 127 (127)
. . .+++. ++++. .+..+. .+||+|||||++|+ .+|++++ ||
T Consensus 92 --~-~----~~~~~----~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 92 --I-S----QGDVS----EIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --E-e----hhhHH----HHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 0 1 12344 56655 333444 99999999999743 2457776 77
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=3.1e-15 Score=103.58 Aligned_cols=79 Identities=20% Similarity=-0.039 Sum_probs=58.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
.|++|||| ||||+++. +++|+|.++|.... ..+..++|++|
T Consensus 27 ~G~nG~GK-STLl~~il-----~~~G~v~~~~~~~~--~~~~~~~~~~q------------------------------- 67 (176)
T cd03238 27 TGVSGSGK-STLVNEGL-----YASGKARLISFLPK--FSRNKLIFIDQ------------------------------- 67 (176)
T ss_pred ECCCCCCH-HHHHHHHh-----hcCCcEEECCcccc--cccccEEEEhH-------------------------------
Confidence 58999999 99999884 36899999876321 11334777766
Q ss_pred HhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcC--Cceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLS--PLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~--P~vl~--~~ 127 (127)
. ++++.+++... .+. .+||+|||||++ ++.+ |++++ ||
T Consensus 68 ----~----~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 68 ----L----QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred ----H----HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 2 55667777642 444 999999999996 5678 99988 77
No 367
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=7.3e-15 Score=99.50 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=39.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEee
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQ 50 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q 50 (127)
-|++|||| |||+++|+|+ ++|++|+|+++|.++.. ...++.++|++|
T Consensus 31 ~G~nGsGK-Stll~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 31 VGPNGSGK-STLLRAIAGL-LKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 37899999 9999999999 89999999999987642 334566888877
No 368
>KOG0054|consensus
Probab=99.59 E-value=1.3e-15 Score=129.61 Aligned_cols=114 Identities=17% Similarity=0.055 Sum_probs=81.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|-.|||| |||+++|.++ ..|.+|+|.|||.|+. ...+|.+++.+||+|.+|.+ |+|.|+.=.... +++
T Consensus 1173 GRTGaGK-SSL~~aLFRl-~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD~ 1243 (1381)
T KOG0054|consen 1173 GRTGAGK-SSLILALFRL-VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SDD 1243 (1381)
T ss_pred CCCCCCH-HHHHHHHHHh-cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc------CHH
Confidence 5689999 9999999999 8999999999999974 47899999999999999999 999998633221 222
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
+.=+..+.. ..+..+.+ +|+..... .++|-||||.+. |+.+++||+
T Consensus 1244 ~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1244 EIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred HHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence 211111100 00233222 23222212 899999999994 678999987
No 369
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=3e-16 Score=113.82 Aligned_cols=118 Identities=11% Similarity=-0.041 Sum_probs=80.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC-cceEEECCE-ec-Ch----hhhcceEEEEeeCc---------cCCCCCCHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGT-EGSITINGH-ER-NL----SQFRKLSCYIMQDN---------QLHANLTVEEAMNV 66 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~-~G~i~i~G~-~~-~~----~~~r~~ig~v~q~~---------~l~~~ltv~e~l~~ 66 (127)
|++|||| |||+++|+++ +.+. .|++++.+. ++ .. ...+..+++++|++ .+.+.+||.+++..
T Consensus 32 G~NGsGK-Stll~Ai~~l-l~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~ 109 (251)
T cd03273 32 GLNGSGK-SNILDAICFV-LGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVL 109 (251)
T ss_pred CCCCCCH-HHHHHHHHHH-hcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEc
Confidence 7899999 9999999999 7765 568888776 32 11 12245799999985 35677888888765
Q ss_pred HHhcccCccccHHHHHhhhccchHHHHHHhCCC--------------------ccCCC--CCCCHHHHHHHHHh------
Q psy1497 67 ATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL--------------------PRGTL--LNLSGLWGIGVFNV------ 118 (127)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~~~--~~LSgG~rqrv~l~------ 118 (127)
......... ......+.+. ++++.+++. +..+. .+||+|||||++++
T Consensus 110 ~~~~~~~in-~~~~~~~~v~----~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 110 GGTNKYLIN-GHRAQQQRVQ----DLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred CCceEEEEC-CEEeeHHHHH----HHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 432211000 1112235666 889999985 22233 89999999999764
Q ss_pred --cCCceee--cC
Q psy1497 119 --LSPLATY--EP 127 (127)
Q Consensus 119 --~~P~vl~--~~ 127 (127)
.+|++++ ||
T Consensus 185 ~~~~~~illlDEP 197 (251)
T cd03273 185 LFKPAPMYILDEV 197 (251)
T ss_pred hccCCCEEEEeCC
Confidence 4678887 77
No 370
>KOG0065|consensus
Probab=99.57 E-value=1.9e-15 Score=127.08 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=94.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCC---CcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc----
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG---TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD---- 75 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~---~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~---- 75 (127)
|+.|||| |||+++++|- ... ..|+|.++|++.+....++.++|+.|++..+|.|||+|.+.|.++++.+..
T Consensus 148 G~pgsG~-ttllkal~g~-~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~ 225 (1391)
T KOG0065|consen 148 GPPGSGK-TTLLKALAGK-LDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDE 225 (1391)
T ss_pred cCCCCch-HHHHHHHhCC-CcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcccccc
Confidence 7899999 9999999998 442 467999999997654347889999999999999999999999998775421
Q ss_pred ccHHHHHh-hhccchHHHHHHhCCCccCCC-------CCCCHHHHHHHH----HhcCCceee
Q psy1497 76 LTKAARKD-VFSMRDCHFLHLSGHLPRGTL-------LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 76 ~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-------~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
..+.+... ..+ .+++.+||+...|. +..|||||+||. ++++|++++
T Consensus 226 ~~R~e~~~~~~d----~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 226 VSRREKLAAMTD----YLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred ccHHHHHHHHHH----HHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 22222111 345 89999999988877 999999999995 688888877
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=4.4e-15 Score=106.93 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=71.8
Q ss_pred CCCCCChHHHHHHHHh----------------CCCCCCCcc--------eEEECCEec----C--hhhhcceEEEEeeCc
Q psy1497 3 KNFGSDIDKYLLQTSG----------------RIKTSGTEG--------SITINGHER----N--LSQFRKLSCYIMQDN 52 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~----------------gl~~~~~~G--------~i~i~G~~~----~--~~~~r~~ig~v~q~~ 52 (127)
|++|||| |||+++|+ ++ +.+.+| +|.+++.+. . ...+++.+++++|+.
T Consensus 30 GpNGsGK-Stll~ai~~~l~~~~~~~~~~~~~~l-i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~ 107 (243)
T cd03272 30 GRNGSGK-SNFFAAIRFVLSDEYTHLREEQRQAL-LHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY 107 (243)
T ss_pred CCCCCCH-HHHHHHHHHHHcCchhhhhhhhHHHh-EeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE
Confidence 7899999 99999997 44 455666 666665321 1 123567799999988
Q ss_pred cCCC-CCCHHHHHHHHHhcccCccccHHHHH--hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH----h----c
Q psy1497 53 QLHA-NLTVEEAMNVATALKLGKDLTKAARK--DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN----V----L 119 (127)
Q Consensus 53 ~l~~-~ltv~e~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~----~ 119 (127)
.+++ .+|..|...+...+. ....... .... .+.+.+++.+..+. .+||+|||||++| + .
T Consensus 108 ~l~~~~~t~~ei~~~l~~~g----l~~~~~~~~~~qg----~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~ 179 (243)
T cd03272 108 FLDKKNVTKNDVMNLLESAG----FSRSNPYYIVPQG----KINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCD 179 (243)
T ss_pred EECCeEcCHHHHHHHHHHcC----CCCCCCcEEEEcC----chHHhhhccccccccccccCHHHHHHHHHHHHHHHhccC
Confidence 8887 467766655544332 1111000 0011 33344555544444 9999999999964 2 2
Q ss_pred CCceee--cC
Q psy1497 120 SPLATY--EP 127 (127)
Q Consensus 120 ~P~vl~--~~ 127 (127)
+|++++ ||
T Consensus 180 ~~~illlDEp 189 (243)
T cd03272 180 PAPFYLFDEI 189 (243)
T ss_pred CCCEEEEECC
Confidence 578877 77
No 372
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.54 E-value=5.5e-15 Score=117.45 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=78.2
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
++|.+|||| |||+|+|+|+ -+--+|+|.+- ....+-|+||.|.+... |.+|.+.+..... ..++
T Consensus 424 I~G~SG~GK-TsLlRaiaGL-WP~g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~d-- 487 (604)
T COG4178 424 ITGESGAGK-TSLLRALAGL-WPWGSGRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DFSD-- 487 (604)
T ss_pred EECCCCCCH-HHHHHHHhcc-CccCCCceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CCCh--
Confidence 368999999 9999999999 66677877653 12358899999999998 9999997754221 1222
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--------CCCCHHHHHHHH----HhcCCceee
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--------LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--------~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
+.+. ++|..+||.+..++ ..||+|||||++ +.++|+++|
T Consensus 488 --~~l~----~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~ 538 (604)
T COG4178 488 --AELV----AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF 538 (604)
T ss_pred --HHHH----HHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEE
Confidence 3455 77888888643222 899999999997 578999987
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=5.9e-14 Score=111.15 Aligned_cols=102 Identities=19% Similarity=0.129 Sum_probs=79.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
|++|+|| |||||+|+|. ..|.+|+|.+.- ...+||..|+. .+++..|+.+++.-... ...
T Consensus 355 G~NG~GK-STLlk~l~g~-~~~~~G~v~~g~--------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~~~---- 415 (530)
T COG0488 355 GPNGAGK-STLLKLLAGE-LGPLSGTVKVGE--------TVKIGYFDQHRDELDPDKTVLEELSEGFP-----DGD---- 415 (530)
T ss_pred CCCCCCH-HHHHHHHhhh-cccCCceEEeCC--------ceEEEEEEehhhhcCccCcHHHHHHhhCc-----ccc----
Confidence 7899999 9999999999 799999998743 23699999996 55678899988764321 111
Q ss_pred HhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
+..+. .+|..|++.. ...+ ..||||||-|+.| ..+|.||+ ||
T Consensus 416 e~~~r----~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 416 EQEVR----AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred HHHHH----HHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 44567 8999999953 2333 9999999999964 56888888 88
No 374
>PLN03073 ABC transporter F family; Provisional
Probab=99.52 E-value=5e-15 Score=120.97 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=70.5
Q ss_pred CCCCCCChHHHHHHHHhCCCC---CCCcceEEECCEec-----Ch------------hhhcceEEEEeeCccCCCCCCHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT---SGTEGSITINGHER-----NL------------SQFRKLSCYIMQDNQLHANLTVE 61 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~---~~~~G~i~i~G~~~-----~~------------~~~r~~ig~v~q~~~l~~~ltv~ 61 (127)
-|.+|||| ||||++|+|. . .|++|+|.+.+++. .. ...+..+++++|++.+... ++.
T Consensus 209 vG~NGsGK-STLLr~l~g~-~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~ 285 (718)
T PLN03073 209 VGRNGTGK-TTFLRYMAMH-AIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TET 285 (718)
T ss_pred ECCCCCCH-HHHHHHHcCC-CCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccc
Confidence 37899999 9999999996 3 47889997655431 11 0012346677775433221 111
Q ss_pred HHHHHH------------------HhcccCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----
Q psy1497 62 EAMNVA------------------TALKLGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF---- 116 (127)
Q Consensus 62 e~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~---- 116 (127)
++.... ..+. .......+.++. .++..+|+. +..++ .+||||||||++
T Consensus 286 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~r~~----~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~a 358 (718)
T PLN03073 286 GKGKGANKDGVDKDAVSQRLEEIYKRLE---LIDAYTAEARAA----SILAGLSFTPEMQVKATKTFSGGWRMRIALARA 358 (718)
T ss_pred cccccccccccchHHHHHHHHHHHHHHH---hcCcchHHHHHH----HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHH
Confidence 111000 0000 001112334555 888999996 33444 999999999996
Q ss_pred HhcCCceee--cC
Q psy1497 117 NVLSPLATY--EP 127 (127)
Q Consensus 117 l~~~P~vl~--~~ 127 (127)
|+.+|+||+ ||
T Consensus 359 L~~~p~lLlLDEP 371 (718)
T PLN03073 359 LFIEPDLLLLDEP 371 (718)
T ss_pred HhcCCCEEEEECC
Confidence 578999988 87
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=6.1e-15 Score=101.66 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+..++|+ + |-+|+|.++|.++.. .++.++-+|..|+......|.|+.++.+.. +.
T Consensus 31 iGPNGaGK-STLLA~lAGm-~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q--------P~ 99 (248)
T COG4138 31 VGPNGAGK-STLLARMAGM-T-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ--------PD 99 (248)
T ss_pred ECCCCccH-HHHHHHHhCC-C-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC--------ch
Confidence 37999999 9999999999 4 789999999998643 556677889999887777788988876532 23
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN 117 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l 117 (127)
.+....++ ++...+++++.+.+ .+|||||=|||-+
T Consensus 100 ~~~a~~i~----~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 100 KTRTELLN----DVAGALALDDKLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHH----HHHhhhcccchhhhhhhhcCcccceeeEE
Confidence 44445566 88889999988888 9999999999943
No 376
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=3e-13 Score=104.73 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=92.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec----Chhh-hcceEEEEeeC---ccCCCCCCHHHHHHHHHhcc---
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER----NLSQ-FRKLSCYIMQD---NQLHANLTVEEAMNVATALK--- 71 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~----~~~~-~r~~ig~v~q~---~~l~~~ltv~e~l~~~~~~~--- 71 (127)
|-.|-|- +-|+.+|+|+ .++.+|+|.++|+++ +... .+..++|||++ ..+.+.+|+.||+.+.....
T Consensus 291 GV~GNGQ-~eL~eaisGl-r~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~ 368 (501)
T COG3845 291 GVAGNGQ-SELVEAISGL-RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPF 368 (501)
T ss_pred ecCCCCH-HHHHHHHhCC-CccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccccc
Confidence 5679999 9999999999 778889999999996 3333 45689999998 47899999999998865421
Q ss_pred -cCccccHHHHHhhhccchHHHHHHhCCCccC-CC--CCCCHHHHHHHH----HhcCCceee
Q psy1497 72 -LGKDLTKAARKDVFSMRDCHFLHLSGHLPRG-TL--LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~--~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
....+......+.+. ++++.+++.... +. .+||||++||+- |..+|++|+
T Consensus 369 ~~~g~l~~~~i~~~a~----~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI 426 (501)
T COG3845 369 SRGGFLDRRAIRKFAR----ELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426 (501)
T ss_pred ccccccCHHHHHHHHH----HHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEE
Confidence 111245667777888 999999996332 22 999999999994 788999987
No 377
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.7e-14 Score=109.66 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=73.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|.+|||| ||+++.|+|+ +.|++|+|++||.+++. +++|+-++-|+-+..+|+.+--.|+.
T Consensus 355 iG~NGsGK-ST~~~LLtGL-~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~-------------- 418 (546)
T COG4615 355 IGGNGSGK-STLAMLLTGL-YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGK-------------- 418 (546)
T ss_pred ECCCCCcH-HHHHHHHhcc-cCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccC--------------
Confidence 37899999 9999999999 99999999999999754 66788888888877777753221110
Q ss_pred HHHHhhhccchHHHHHHhCCCcc---CCC----CCCCHHHHHHHHH----hcCCceee
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPR---GTL----LNLSGLWGIGVFN----VLSPLATY 125 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~---~~~----~~LSgG~rqrv~l----~~~P~vl~ 125 (127)
...+.++ .+++++.+.+. .|. -+||.|||+|+++ +-+-+|++
T Consensus 419 -as~q~i~----~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv 471 (546)
T COG4615 419 -ASPQLIE----KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV 471 (546)
T ss_pred -CChHHHH----HHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE
Confidence 1122344 66666666432 222 8899999999973 44555544
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.40 E-value=1.6e-13 Score=97.03 Aligned_cols=98 Identities=9% Similarity=-0.087 Sum_probs=65.8
Q ss_pred CCCCCCChHHHHHHHH----hCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-----cCCCCCCHHHHHHHHHhccc
Q psy1497 2 RKNFGSDIDKYLLQTS----GRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-----QLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l----~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-----~l~~~ltv~e~l~~~~~~~~ 72 (127)
-|++|||| |||+++| .|. .+++.|.+..+...+.....+..+++++|++ .....+|+.+++.+.
T Consensus 28 ~G~NGsGK-TTLl~ai~~~l~G~-~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~----- 100 (204)
T cd03240 28 VGQNGAGK-TTIIEALKYALTGE-LPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC----- 100 (204)
T ss_pred ECCCCCCH-HHHHHHHHHHHcCC-CCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee-----
Confidence 37899999 9999999 488 6787877762222233344567899999987 334455777776442
Q ss_pred CccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH------H----HhcCCceee--cC
Q psy1497 73 GKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV------F----NVLSPLATY--EP 127 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv------~----l~~~P~vl~--~~ 127 (127)
.. ..+. +.+ +. .+||+||+||+ + ++.+|++++ ||
T Consensus 101 ----~~----~~~~----~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 101 ----HQ----GESN----WPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred ----ch----HHHH----HHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 11 1123 333 22 88999999974 3 467999988 77
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.37 E-value=2.1e-12 Score=94.47 Aligned_cols=70 Identities=20% Similarity=-0.010 Sum_probs=51.1
Q ss_pred EEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----H
Q psy1497 45 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----N 117 (127)
Q Consensus 45 ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l 117 (127)
+.|..++...+..+|+.|++.|+..+. . ..++. ++++.+||.. ..++ .+|||||+||++ |
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~----~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL 184 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIP------K---IARKL----QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 184 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHH----HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHH
Confidence 455556666678899999998876432 1 23456 8899999976 3555 999999999996 4
Q ss_pred hcC---Cceee--cC
Q psy1497 118 VLS---PLATY--EP 127 (127)
Q Consensus 118 ~~~---P~vl~--~~ 127 (127)
+.+ |++++ ||
T Consensus 185 ~~~~~~p~lllLDEP 199 (261)
T cd03271 185 SKRSTGKTLYILDEP 199 (261)
T ss_pred hcCCCCCcEEEEECC
Confidence 554 78877 77
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=8.6e-15 Score=104.05 Aligned_cols=108 Identities=13% Similarity=-0.028 Sum_probs=69.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-----cccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-----KDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-----~~~~ 77 (127)
|++|||| |||+++|.-. +|.+.. ...++++++++|+..+++.+++.+++.+....... .+..
T Consensus 32 GpNGaGK-STll~~i~~~-----------~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 98 (212)
T cd03274 32 GPNGSGK-SNVIDSMLFV-----------FGFRAS-KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGID 98 (212)
T ss_pred CCCCCCH-HHHHHHHHHH-----------hccCHH-HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcC
Confidence 7899999 9999999722 233221 11125699999999999999999887665432100 0111
Q ss_pred HHHHHh--hhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHh----c----CCceee--cC
Q psy1497 78 KAARKD--VFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNV----L----SPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~--~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~----~----~P~vl~--~~ 127 (127)
...... ... ++++.+++.+..+. ..||+|||||++|+ . .|++++ ||
T Consensus 99 ~~~~~~~v~~~----~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP 158 (212)
T cd03274 99 LDHNRFLILQG----EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 158 (212)
T ss_pred CCCCceEEcCC----cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence 100000 024 66677888766666 89999999999753 2 378877 76
No 381
>KOG0060|consensus
Probab=99.32 E-value=1.7e-12 Score=102.31 Aligned_cols=110 Identities=15% Similarity=-0.013 Sum_probs=72.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |+|+|+++|+ -+-.+|++..-...- -..+-|+||.|.+.-+ |.+|.+.+...--. ...+...
T Consensus 467 tG~sG~GK-tSLlRvlggL-Wp~~~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~ 536 (659)
T KOG0060|consen 467 TGPSGCGK-TSLLRVLGGL-WPSTGGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSAS 536 (659)
T ss_pred ECCCCCch-hHHHHHHhcc-cccCCCeEEecccCC-----CCceEEecCCCCcccc-chhheeeccCcccc--ccccCCC
Confidence 38999999 9999999999 666899887533211 1458999999998888 99999988732110 0111111
Q ss_pred HhhhccchHHHHHHhCCCc----------cC--CC-CCCCHHHHHHHHH----hcCCceee
Q psy1497 82 KDVFSMRDCHFLHLSGHLP----------RG--TL-LNLSGLWGIGVFN----VLSPLATY 125 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~----------~~--~~-~~LSgG~rqrv~l----~~~P~vl~ 125 (127)
.+.+. ..|+.+.|.+ .. |. ..||+||+||+++ .++|++-|
T Consensus 537 d~~i~----r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~Ai 593 (659)
T KOG0060|consen 537 DEDIL----RILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAI 593 (659)
T ss_pred HHHHH----HHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEE
Confidence 12233 4444443322 12 22 8999999999985 57998754
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.29 E-value=7.3e-12 Score=96.80 Aligned_cols=101 Identities=17% Similarity=-0.029 Sum_probs=75.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|++|-|| ||++++|+|. +.|++|. . ..-.++|-||-.......||.+.+.-...-.....
T Consensus 374 GpNgiGK-TTFvk~LAG~-ikPdeg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s------- 433 (591)
T COG1245 374 GPNGIGK-TTFVKLLAGV-IKPDEGS----E-------EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS------- 433 (591)
T ss_pred CCCCcch-HHHHHHHhcc-ccCCCCC----C-------ccceEeecceeecCCCCCcHHHHHHHhhhhhcccc-------
Confidence 7899999 9999999999 8999997 1 12468999998666677799998865443211111
Q ss_pred hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.... ++++-+.|.+..++ .+|||||.|||++ +.+++|-+ ||
T Consensus 434 ~~~~----ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 434 YFKT----EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred hhHH----hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 1223 67778888888877 9999999999974 56777754 66
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.22 E-value=2.6e-11 Score=86.06 Aligned_cols=97 Identities=11% Similarity=-0.117 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC-Ee-cChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING-HE-RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G-~~-~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|++..+.+..+...... .+ +........+++++|...... ++.++. +.+..
T Consensus 34 ~G~NGsGK-STll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~ 100 (213)
T cd03279 34 CGPTGAGK-STILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYD 100 (213)
T ss_pred ECCCCCCH-HHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHH
Confidence 47899999 99999999642444444444321 11 222334567999998863211 111110 12222
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN 117 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l 117 (127)
+..+. ..++..++.+..+. .+||+||+||+++
T Consensus 101 ~~~~~------~~l~~g~l~~~l~~~~~~lS~G~~~r~~l 134 (213)
T cd03279 101 QFTRI------VLLPQGEFDRFLARPVSTLSGGETFLASL 134 (213)
T ss_pred HHHHh------hhhhhcchHHHhcCCccccCHHHHHHHHH
Confidence 11111 11233334444455 8999999999964
No 384
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.22 E-value=1e-10 Score=83.85 Aligned_cols=37 Identities=22% Similarity=-0.060 Sum_probs=29.7
Q ss_pred HHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCC--ceee--cC
Q psy1497 91 HFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSP--LATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P--~vl~--~~ 127 (127)
++++.+++.+ ..+. .+||+||+||++ ++.+| ++++ ||
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7789999975 3555 999999999996 56687 5877 77
No 385
>KOG0927|consensus
Probab=99.19 E-value=2e-11 Score=95.71 Aligned_cols=103 Identities=19% Similarity=0.081 Sum_probs=72.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeC--ccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
|++|||| |||||+++|. +.|+.|.|.-.-+. .+++.-|. ..+.-..++.|++.-.. ....
T Consensus 423 GPNG~GK-sTLlKl~~gd-l~p~~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~ 484 (614)
T KOG0927|consen 423 GPNGAGK-STLLKLITGD-LQPTIGMVSRHSHN--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEK 484 (614)
T ss_pred cCCCCch-hhhHHHHhhc-cccccccccccccc--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccc
Confidence 7899999 9999999999 89999988654332 23333343 33445556666653221 1122
Q ss_pred HHhhhccchHHHHHHhCCCccC-CC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRG-TL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~-~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.+. .++.++||.... +. ++||.|||.||. ++.+|.+|+ ||
T Consensus 485 ~~e~~r----~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 485 ELEEMR----SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred hHHHHH----HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 345677 899999998444 44 999999999995 578999988 77
No 386
>KOG0066|consensus
Probab=99.11 E-value=1.2e-10 Score=90.25 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=76.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|+.|.|| ||||++|.|- +.|..|+.+-+ -|-+||+..|.. .+...-|..|++.-.. .++..
T Consensus 619 VGPNGVGK-STlLkLL~Gk-l~P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq 682 (807)
T KOG0066|consen 619 VGPNGVGK-STLLKLLIGK-LDPNDGELRKN--------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQ 682 (807)
T ss_pred ECCCCccH-HHHHHHHhcC-CCCCcchhhcc--------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCChH
Confidence 37899999 9999999999 89999876432 245799988863 3555567777665432 23333
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC---CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL---LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~---~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.+. ..|-.+||..+++. ..|||||+-||++ +..|+||+ ||
T Consensus 683 ----~AR----K~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 683 ----EAR----KQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred ----HHH----HHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 244 66789999888887 9999999999985 46999988 76
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.07 E-value=3.6e-10 Score=79.58 Aligned_cols=98 Identities=19% Similarity=0.047 Sum_probs=58.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe----cChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE----RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~----~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+.+|.-. ...... ....|.. +........+.+++|+..++++ .. .
T Consensus 27 ~G~NGsGK-Stll~ai~~~-l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-----------~~------~ 86 (198)
T cd03276 27 VGNNGSGK-SAILTALTIG-LGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-----------PL------C 86 (198)
T ss_pred ECCCCCcH-HHHHHHHHHH-hcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----------cC------C
Confidence 37899999 9999998744 222211 1111221 1111224568899998777661 01 0
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH--------hcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN--------VLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l--------~~~P~vl~--~~ 127 (127)
....+.+. ++++. .+..+. .+||+|||||++| +.+|++++ ||
T Consensus 87 -~~~~~~~~----~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 87 -VLSQDMAR----SFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred -HHHHHHHH----HHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 11123455 66655 333444 9999999999964 36999988 77
No 388
>KOG0062|consensus
Probab=99.04 E-value=2.6e-10 Score=89.12 Aligned_cols=105 Identities=17% Similarity=0.016 Sum_probs=75.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
.++.|+|| ||+++++.+- ..|..|.+.+.+ |.+|+|.+|.+.=+-.++|.+.-... ..+. +. .
T Consensus 396 vg~ng~gk-st~lKi~~~~-l~~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~vd~~~-~~~p--G~----~ 458 (582)
T KOG0062|consen 396 VGENGDGK-STLLKILKGD-LTPTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAVDFME-KSFP--GK----T 458 (582)
T ss_pred eccCchhH-HHHHHHHhcc-CCcccceeeecc--------cceecchhHhhhhHHHHHhHHHHHHH-HhCC--CC----C
Confidence 57899999 9999999998 789998776543 56799999987655555554433222 2221 22 2
Q ss_pred HhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHHHh----cCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVFNV----LSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~l~----~~P~vl~--~~ 127 (127)
++.+. ..+..|||+. .... ..||||||-||++| .+|-+|+ ||
T Consensus 459 ~ee~r----~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 459 EEEIR----RHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred HHHHH----HHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 34456 7889999964 3333 88999999999875 5999887 87
No 389
>KOG0064|consensus
Probab=98.98 E-value=4e-10 Score=88.64 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=64.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh---cccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA---LKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~---~~~~~~~~~ 78 (127)
-|++|||| |+|+|+|.|+ -+-..|...+ +. ...+-|+||.|..-- =|.+|.+.+.-. ++. .+..+
T Consensus 514 tGPNGCGK-SSLfRILggL-WPvy~g~L~~------P~--~~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~~-kg~~d 581 (728)
T KOG0064|consen 514 TGPNGCGK-SSLFRILGGL-WPVYNGLLSI------PR--PNNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMKR-KGYTD 581 (728)
T ss_pred ECCCCccH-HHHHHHHhcc-CcccCCeeec------CC--CcceEeccCCCccCc-CcccceeecCCcHHHHHh-cCCCH
Confidence 48999999 9999999999 5444443322 11 245999999987663 377777765321 110 12333
Q ss_pred HHHHhhhccc-hHHHHHH-hCCCccCCC-CCCCHHHHHHHHH----hcCCce
Q psy1497 79 AARKDVFSMR-DCHFLHL-SGHLPRGTL-LNLSGLWGIGVFN----VLSPLA 123 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~-~~l~~~~~~-~~LSgG~rqrv~l----~~~P~v 123 (127)
.+.......- .+.++++ .|++...|. ..||||+|||+++ -+.|+.
T Consensus 582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky 633 (728)
T KOG0064|consen 582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY 633 (728)
T ss_pred HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch
Confidence 3222111100 1123332 234444455 8899999999975 467764
No 390
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.96 E-value=5.4e-10 Score=71.41 Aligned_cols=55 Identities=7% Similarity=-0.144 Sum_probs=43.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
.|++|||| |||++++. +|++.++|.++.. ...++.+++++|+ ++.. |++||+.+.
T Consensus 21 ~GpSGsGK-STLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~~Ni~~~ 78 (107)
T cd00820 21 TGDSGIGK-TELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLRLNIFLI 78 (107)
T ss_pred EcCCCCCH-HHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHHhhceee
Confidence 58999999 99999975 7899999998633 3445667788777 4443 899999874
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.92 E-value=4.2e-10 Score=80.03 Aligned_cols=119 Identities=15% Similarity=0.061 Sum_probs=78.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE-----EECCEec---Chhhh----cceEEEEeeCcc--CCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI-----TINGHER---NLSQF----RKLSCYIMQDNQ--LHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i-----~i~G~~~---~~~~~----r~~ig~v~q~~~--l~~~ltv~e~l~~~ 67 (127)
-|.+|||| |..-++|+|. .+ +.-.| ++++.++ .+++. .+.|+++||++. +.|.-++...+.-.
T Consensus 39 VGESGSGK-SLiAK~Ic~v-~k-dnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~ 115 (330)
T COG4170 39 VGESGSGK-SLIAKAICGV-NK-DNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN 115 (330)
T ss_pred eccCCCch-hHHHHHHhcc-cc-cceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhh
Confidence 47899999 9999999998 43 44444 4555552 33332 346889999964 66665665554322
Q ss_pred Hh--cccCcccc-HHHHHhhhccchHHHHHHhCCCccCCC-----CCCCHHHHHHH----HHhcCCceee--cC
Q psy1497 68 TA--LKLGKDLT-KAARKDVFSMRDCHFLHLSGHLPRGTL-----LNLSGLWGIGV----FNVLSPLATY--EP 127 (127)
Q Consensus 68 ~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~LSgG~rqrv----~l~~~P~vl~--~~ 127 (127)
.. -+....+. -...+.++- ++|+.+|+.++.|. .+|.-|+-|+| |+|.+|++|+ ||
T Consensus 116 IP~wTfkgrWWq~F~WrKrrAI----eLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEP 185 (330)
T COG4170 116 IPAWTYKGRWWQRFGWRKRRAI----ELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred CccccccchHhhhhchhHHHHH----HHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCC
Confidence 11 11000000 011345566 99999999988776 89999999998 4788999998 65
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.79 E-value=3.5e-08 Score=83.05 Aligned_cols=57 Identities=25% Similarity=0.030 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCC---ceee--
Q psy1497 58 LTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSP---LATY-- 125 (127)
Q Consensus 58 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P---~vl~-- 125 (127)
||+.|++.|+..+. . . .... ++++.+||.. ..++ .+|||||+||+. |+.+| ++++
T Consensus 792 ltv~E~l~~f~~~~---~-----i-~~~l----~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP---K-----I-ARKL----QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch---h-----h-hHHH----HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 67888877765432 1 1 1234 7889999975 3555 999999999995 56788 7776
Q ss_pred cC
Q psy1497 126 EP 127 (127)
Q Consensus 126 ~~ 127 (127)
||
T Consensus 859 EP 860 (943)
T PRK00349 859 EP 860 (943)
T ss_pred CC
Confidence 77
No 393
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.79 E-value=5e-08 Score=86.04 Aligned_cols=69 Identities=14% Similarity=-0.049 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----h---cCCce
Q psy1497 54 LHANLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----V---LSPLA 123 (127)
Q Consensus 54 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~---~~P~v 123 (127)
.|...||.|++.+...-.........+..+.+ ++++.+|+.+. .++ .+|||||+||++| + .+|++
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-----~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-----HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-----HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 56788999999886541110011122232332 46788999875 566 9999999999963 3 58999
Q ss_pred ee--cC
Q psy1497 124 TY--EP 127 (127)
Q Consensus 124 l~--~~ 127 (127)
++ ||
T Consensus 834 LILDEP 839 (1809)
T PRK00635 834 YVLDEP 839 (1809)
T ss_pred EEEeCC
Confidence 88 87
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.78 E-value=8.7e-10 Score=79.89 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=24.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING 33 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G 33 (127)
-|++|||| |||+.+|+++ ..+..|++...+
T Consensus 28 ~G~NGsGK-Stll~ai~~~-l~~~~~~~r~~~ 57 (247)
T cd03275 28 IGPNGSGK-SNLMDAISFV-LGEKSSHLRSKN 57 (247)
T ss_pred ECCCCCCH-HHHHHHHHHH-hCCCcccccccc
Confidence 37899999 9999999999 677777776544
No 395
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.77 E-value=5.2e-09 Score=76.99 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=47.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC----hhhhcceEEEEeeCccCCCCCCHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEEA 63 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~----~~~~r~~ig~v~q~~~l~~~ltv~e~ 63 (127)
-|++|||| |||+++|+|+ +.|++|+|.++|+++. ..++...+++++|.. +.+.++|.++
T Consensus 117 ~g~~g~GK-ttl~~~l~~~-~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 117 ISPPQCGK-TTLLRDLARI-LSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred EcCCCCCH-HHHHHHHhCc-cCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 47899999 9999999999 8999999999999963 244555678888864 5566677665
No 396
>KOG0063|consensus
Probab=98.77 E-value=1.1e-08 Score=79.07 Aligned_cols=95 Identities=14% Similarity=-0.046 Sum_probs=65.2
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
|-+..|.|| ||++++++|. +.|++| .++. .-.++|-||....-..-||++.+.--.+ +.-.
T Consensus 372 mlgEngtgk-TTfi~mlag~-~~pd~~------~e~p----~lnVSykpqkispK~~~tvR~ll~~kIr-------~ay~ 432 (592)
T KOG0063|consen 372 MLGENGTGK-TTFIRMLAGR-LKPDEG------GEIP----VLNVSYKPQKISPKREGTVRQLLHTKIR-------DAYM 432 (592)
T ss_pred EEccCCcch-hHHHHHHhcC-CCCCcc------Cccc----ccceeccccccCccccchHHHHHHHHhH-------hhhc
Confidence 347899999 9999999999 788875 1221 2347788887554444478876643221 1112
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHh
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNV 118 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~ 118 (127)
+.+.+. +.++-+-+++..|+ .+||||++||++++
T Consensus 433 ~pqF~~----dvmkpL~ie~i~dqevq~lSggelQRval~ 468 (592)
T KOG0063|consen 433 HPQFVN----DVMKPLQIENIIDQEVQGLSGGELQRVALA 468 (592)
T ss_pred CHHHHH----hhhhhhhHHHHHhHHhhcCCchhhHHHHHH
Confidence 234556 77777777777777 99999999999863
No 397
>KOG0062|consensus
Probab=98.71 E-value=1.1e-08 Score=80.23 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=30.2
Q ss_pred HHHHHhCCCccCCC---CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 91 HFLHLSGHLPRGTL---LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~~~~~---~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.+|.-+|+.+-+.. .+||||+|.|++| ..+|+||+ ||
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 58889999754433 9999999999964 57999988 87
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.63 E-value=6.7e-09 Score=73.19 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=57.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+|+|+|. .. +...|.++... .+++|...+|+.+|+.|++.++... ...+.
T Consensus 31 tGpNg~GK-STllr~i~~~-~~-----l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l~~~~s~------~~~e~ 91 (199)
T cd03283 31 TGSNMSGK-STFLRTIGVN-VI-----LAQAGAPVCAS------SFELPPVKIFTSIRVSDDLRDGISY------FYAEL 91 (199)
T ss_pred ECCCCCCh-HHHHHHHHHH-HH-----HHHcCCEEecC------ccCcccceEEEeccchhccccccCh------HHHHH
Confidence 48999999 9999999987 42 22345444221 2566777899999999999775421 12222
Q ss_pred HhhhccchHHHHHHhCCCc----cCCC--CCCCHHHHHH
Q psy1497 82 KDVFSMRDCHFLHLSGHLP----RGTL--LNLSGLWGIG 114 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~----~~~~--~~LSgG~rqr 114 (127)
+++. ++++.+++.+ ..|. ..++-..+..
T Consensus 92 -~~~~----~iL~~~~~~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 92 -RRLK----EIVEKAKKGEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred -HHHH----HHHHhccCCCCeEEEEecccCCCCHHHHHH
Confidence 4577 8888888521 1233 5676666543
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.60 E-value=2e-08 Score=78.10 Aligned_cols=37 Identities=19% Similarity=-0.037 Sum_probs=32.4
Q ss_pred HHHHHhCCCccCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 91 HFLHLSGHLPRGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
++.+.++|.+..++ ++||||+.||+|| +.++++.| ||
T Consensus 196 evve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 196 EVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred HHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 89999999999988 9999999999975 56888866 65
No 400
>KOG0927|consensus
Probab=98.60 E-value=2.7e-08 Score=78.49 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=28.5
Q ss_pred HHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 91 HFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+|..+|... ..++ .+||||||.|++ |..+|++|+ ||
T Consensus 203 ~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP 248 (614)
T KOG0927|consen 203 KILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248 (614)
T ss_pred HHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC
Confidence 6677777643 3344 999999999996 567999988 77
No 401
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=2.3e-07 Score=64.54 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=49.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc--cCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~--~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+++ ++++.|.|.+.+..-.....+..++++.+.. ..++..+..+.+....+..
T Consensus 31 ~G~tGSGK-TTll~aL~~~-i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 31 SGGTGSGK-TTLLNALLAF-IPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred ECCCCCCH-HHHHHHHHhh-cCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 37899999 9999999999 8999999999765321111234466666543 4567789999988776543
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=73.59 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=62.4
Q ss_pred CCCCCChHHHHHHHHhCCC-------CCCCcceEEECCEecChhhhcceEEEEeeC-ccCCCCCCHHHHHHHHHhcccCc
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-------TSGTEGSITINGHERNLSQFRKLSCYIMQD-NQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-------~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~-~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
|.||||| ||+|++|+|.. +.|++|.|.+--.. -.+++|-+ ..-|..-|+.|++.-- . .
T Consensus 416 GqSGaGK-ttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~--t---G 481 (593)
T COG2401 416 GQSGAGK-TTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK--T---G 481 (593)
T ss_pred ecCCCCc-chHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc--c---C
Confidence 6799999 99999999973 35788887653211 12334433 1223355676665321 1 1
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCcc-CCC---CCCCHHHHHHHH----HhcCCceee
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPR-GTL---LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~---~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
+. ..+. ++|...|+.+. +-+ ++||.||+.|+- ++..|.+++
T Consensus 482 D~------~~Av----eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~ 530 (593)
T COG2401 482 DL------NAAV----EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL 530 (593)
T ss_pred ch------hHHH----HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence 11 1233 78889999643 323 999999998884 567888775
No 403
>KOG2355|consensus
Probab=98.48 E-value=2.3e-07 Score=65.96 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=59.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec-Chhhh--cceEEEEee----------CccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER-NLSQF--RKLSCYIMQ----------DNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~-~~~~~--r~~ig~v~q----------~~~l~~~ltv~e~l~~~~ 68 (127)
-|.+|||| |||||+|+|- .---.|.|.+.|++. ....+ .....|.-- +..+--++++.+.+ |+.
T Consensus 46 VGaNGaGK-tTlLKiLsGK-hmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV 122 (291)
T KOG2355|consen 46 VGANGAGK-TTLLKILSGK-HMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV 122 (291)
T ss_pred EecCCCch-hhhHHHhcCc-ccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHH-hhc
Confidence 36799999 9999999998 555569999999873 11110 112333322 12223355665544 432
Q ss_pred hcccCccccHHHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHHHh
Q psy1497 69 ALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVFNV 118 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~l~ 118 (127)
.. . .. ++-+ .+++.++++- .-+ +.+|-|||+||.|+
T Consensus 123 ~g-----~-dp---~Rre----~LI~iLDIdl-~WRmHkvSDGqrRRVQic 159 (291)
T KOG2355|consen 123 GG-----D-DP---ERRE----KLIDILDIDL-RWRMHKVSDGQRRRVQIC 159 (291)
T ss_pred cC-----C-Ch---hHhh----hhhhheeccc-eEEEeeccccchhhhHHH
Confidence 21 1 11 2233 6666777642 233 89999999999763
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.27 E-value=3.3e-07 Score=64.41 Aligned_cols=16 Identities=19% Similarity=0.082 Sum_probs=14.9
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
.|++|||| |||+++|+
T Consensus 34 tG~Ng~GK-Stll~~i~ 49 (200)
T cd03280 34 TGPNAGGK-TVTLKTLG 49 (200)
T ss_pred ECCCCCCh-HHHHHHHH
Confidence 48899999 99999998
No 405
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.22 E-value=3.1e-06 Score=60.26 Aligned_cols=18 Identities=11% Similarity=-0.186 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||||.+|.-.
T Consensus 29 ~G~NgsGK-S~lleAi~~~ 46 (213)
T cd03277 29 IGPNGSGK-SSIVCAICLG 46 (213)
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999988765
No 406
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.18 E-value=1.4e-06 Score=64.87 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=47.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--CCcceEEECCEec--ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--GTEGSITINGHER--NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~~~G~i~i~G~~~--~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||.++|.++ +. |++|+|.+.+.+- .....+...+++ |...++..+++.+.+.+...++
T Consensus 68 aG~~GSGK-STlar~L~~l-l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 68 AGSVAVGK-STTARILQAL-LSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 48899999 9999999998 66 6788887755552 122233345654 7777788888888887755443
No 407
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.17 E-value=1.1e-06 Score=69.20 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=27.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc-eEEECCEecC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG-SITINGHERN 37 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G-~i~i~G~~~~ 37 (127)
-|++|||| ||||+ +|+ ..|++| +|+++|.++.
T Consensus 38 ~G~SGsGK-STLLr--~~l-~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 38 CGSSGDGK-SEILA--ENK-RKFSEGYEFFLDATHSF 70 (504)
T ss_pred ECCCCCCH-HHHHh--cCC-CCCCCCCEEEECCEECC
Confidence 48999999 99999 677 677777 7999999863
No 408
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.13 E-value=1.4e-06 Score=60.22 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=44.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhc-ceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFR-KLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
-|.+|||| |||+++|+++ +.+ ++++|.++.. ...+ ...++.+|+...+++.++..++.+..
T Consensus 9 ~G~sGsGK-STl~~~la~~-l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 9 MGVSGSGK-SLIGSKIAAL-FSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred ECCCCCCH-HHHHHHHHHh-cCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 48899999 9999999999 665 5888877643 1122 23567777766667788888887654
No 409
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.06 E-value=1.2e-06 Score=59.80 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=45.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhc-ceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFR-KLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
|.+|||| ||+.++|++. . |.+.++|..+.. ...+ ...|+.+|+....+++++.++..+...
T Consensus 2 G~sGsGK-STla~~la~~-l----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 64 (163)
T PRK11545 2 GVSGSGK-SAVASEVAHQ-L----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQ 64 (163)
T ss_pred CCCCCcH-HHHHHHHHHH-h----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 7899999 9999999998 5 678888854322 2122 346788888777788888888887543
No 410
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.03 E-value=8.3e-06 Score=60.53 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=47.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE---CCEecCh--hhhcc-eEEEEeeCccC---C-CCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI---NGHERNL--SQFRK-LSCYIMQDNQL---H-ANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i---~G~~~~~--~~~r~-~ig~v~q~~~l---~-~~ltv~e~l~~~~~ 69 (127)
-|.+|+|| |||+|.|.|. ..++.|+|.. .|..... ..++. ..+++.+.|.+ . ..++..|...++..
T Consensus 167 ~G~sg~GK-STlin~l~~~-~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~~ 242 (287)
T cd01854 167 VGQSGVGK-STLINALLPD-LDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFPE 242 (287)
T ss_pred ECCCCCCH-HHHHHHHhch-hhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHhHH
Confidence 37899999 9999999999 7889999876 3433221 12222 36789999877 3 56788887776543
No 411
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.99 E-value=8.7e-06 Score=58.37 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=44.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcce----EEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGS----ITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~----i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|.+|||| |||.++|+++ +++.+|. |.+++..... ..+...+++++ ...+..+++.+...+...+
T Consensus 39 ~G~~GsGK-TTl~~~L~~~-l~~~~g~~~v~i~~D~~~~~~-~~~~~~g~~~~-~~~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 39 AGPPGAGK-STLAEFLEAL-LQQDGELPAIQVPMDGFHLDN-AVLDAHGLRPR-KGAPETFDVAGLAALLRRL 107 (229)
T ss_pred ECCCCCCH-HHHHHHHHHH-hhhccCCceEEEecccccCCH-HHHHhcccccc-cCCCCCCCHHHHHHHHHHH
Confidence 47899999 9999999999 8899998 5555433332 22334677765 3344567777777665444
No 412
>PRK01889 GTPase RsgA; Reviewed
Probab=97.99 E-value=1e-05 Score=61.85 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=41.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA 56 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~ 56 (127)
-|.+|+|| |||++.|+|. ..++.|+|.+++..-.....++.+.+++|...+++
T Consensus 201 vG~sgvGK-StLin~L~g~-~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 201 LGSSGVGK-STLVNALLGE-EVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred ECCCCccH-HHHHHHHHHh-cccceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 47899999 9999999999 78999999998754322233567888888766664
No 413
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.96 E-value=3e-06 Score=60.68 Aligned_cols=36 Identities=11% Similarity=-0.123 Sum_probs=23.4
Q ss_pred HHHHHhCCCccCCCCCCCHHHHHHHH----H--hcCCceee--cC
Q psy1497 91 HFLHLSGHLPRGTLLNLSGLWGIGVF----N--VLSPLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~~~~~~~LSgG~rqrv~----l--~~~P~vl~--~~ 127 (127)
+++..+++.+... ..+|.|+++++. + +.+|++++ ||
T Consensus 75 ~il~~~~l~d~~~-~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 75 CILARVGASDSQL-KGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred eeEeeeccccchh-cCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 4555666653322 678888887663 3 57888877 76
No 414
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=1.3e-05 Score=62.64 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=49.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceE---EECCEecCh---------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSI---TINGHERNL---------SQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i---~i~G~~~~~---------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
|.+|||| |||+++|+|+ ..++.+.+ -.++.++.. ...+..+++++|+...+..+++.+++.+.+.+
T Consensus 162 G~sGaGK-STLl~~I~g~-~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 162 AGSGVGK-SVLLGMITRY-TQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCCCCCc-cHHHHHHhcc-cCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 6899999 9999999999 77775433 333333211 11245699999999999999999998876654
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.89 E-value=3.5e-06 Score=59.66 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
.|++|+|| ||++++++++
T Consensus 35 ~G~n~~GK-stll~~i~~~ 52 (204)
T cd03282 35 TGPNMSGK-STYLKQIALL 52 (204)
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999987
No 416
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=1.9e-05 Score=58.15 Aligned_cols=23 Identities=17% Similarity=-0.172 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHh----c----CCceee--cC
Q psy1497 105 LNLSGLWGIGVFNV----L----SPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l~----~----~P~vl~--~~ 127 (127)
..||+||+||++++ . +|++++ ||
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp 201 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEI 201 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 46999999999754 2 999887 76
No 417
>PRK00098 GTPase RsgA; Reviewed
Probab=97.83 E-value=4.4e-05 Score=56.94 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE---CCEecCh-hhh--cceEEEEeeCccCC----CCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI---NGHERNL-SQF--RKLSCYIMQDNQLH----ANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i---~G~~~~~-~~~--r~~ig~v~q~~~l~----~~ltv~e~l~~~~ 68 (127)
-|.+|+|| |||+|.|.|. ..+..|+|.. .|+.... ..+ ....+++.+.|.+. ..++..+...++.
T Consensus 170 ~G~sgvGK-Stlin~l~~~-~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~ 244 (298)
T PRK00098 170 AGQSGVGK-STLLNALAPD-LELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFP 244 (298)
T ss_pred ECCCCCCH-HHHHHHHhCC-cCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHH
Confidence 37899999 9999999999 7889999986 4443322 111 22467899988877 4677776655543
No 418
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.82 E-value=1.6e-05 Score=64.21 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=46.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
-|.+|||| |||.+.|+++ + |..|.|.++|.... ...+.+.+|++..++..++.+++.-
T Consensus 71 aGpSGSGK-TTLAk~Lagl-L-p~vgvIsmDdy~~~----~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 71 AGPSGAGK-TVFTEKVLNF-M-PSIAVISMDNYNDS----SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred ECCCCCcH-HHHHHHHHhh-C-CCcEEEEEcceecc----hhhhCccCCChhhcchhHHHHHHHH
Confidence 47899999 9999999998 5 67899999997532 1235678888888888888888754
No 419
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.78 E-value=3.2e-05 Score=60.63 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=38.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC---EecCh-------hhhcceEEEEeeCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING---HERNL-------SQFRKLSCYIMQDNQ 53 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G---~~~~~-------~~~r~~ig~v~q~~~ 53 (127)
-+.+|||| |||+++|+++ ..|+.|.|.+.| +++.. ...++.+++|+|.+.
T Consensus 171 ~G~SGsGK-TTLL~~Ia~l-~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 171 FAGSGVGK-STLLAMLARA-DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 36899999 9999999999 799999998865 44321 112457999999754
No 420
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=0.00027 Score=51.94 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| ||++.+|.-+
T Consensus 27 ~G~NGsGK-S~ll~Ai~~~ 44 (270)
T cd03242 27 VGENAQGK-TNLLEAISLL 44 (270)
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999887654
No 421
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.72 E-value=3.5e-05 Score=53.46 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=32.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQD 51 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~ 51 (127)
-|++|||| |||+++|++. ..+ .+.+.+..+.. ...+..+++++|+
T Consensus 8 ~G~sGsGK-sTl~~~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 8 MGPSGSGK-DSLLAALRQR-EQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 48999999 9999999998 554 57777765432 2223457777776
No 422
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.71 E-value=2.3e-05 Score=59.06 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---------hhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---------SQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
|++|||| ||++..|++. +.+..++|.+.+.|... ...+..+.+++|.....|..++.+++...
T Consensus 121 GpnGsGK-TTt~~kLA~~-l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 121 GVNGVGK-TTTIGKLAHK-YKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCCCCcH-HHHHHHHHHH-HHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999 9999999999 78888899987766421 12345689999876667766777877654
No 423
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.69 E-value=0.00019 Score=53.82 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=44.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-cChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~ 70 (127)
-|+.|||| |||+++|+++ +++..+.+.+.... +.... +..+.++.+.. .-....+..+.+....+.
T Consensus 150 ~G~tGsGK-TTll~al~~~-~~~~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 150 SGGTGSGK-TTFLKSLVDE-IPKDERIITIEDTREIFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred ECCCCCCH-HHHHHHHHcc-CCccccEEEEcCccccCCCC-CCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 37899999 9999999999 88888988885422 22221 34455554432 124467888888776553
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.67 E-value=0.00016 Score=49.58 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE-----------CCEec---Chhhh-----cceEEEEeeCccCCCCCCHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI-----------NGHER---NLSQF-----RKLSCYIMQDNQLHANLTVEE 62 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i-----------~G~~~---~~~~~-----r~~ig~v~q~~~l~~~ltv~e 62 (127)
-|++|||| |||++.|+.. +.+. |.+.+ +|.++ ....+ ...++.++|....+...++..
T Consensus 7 ~G~sGsGK-ttl~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 83 (179)
T TIGR02322 7 VGPSGAGK-DTLLDYARAR-LAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPAEI 83 (179)
T ss_pred ECCCCCCH-HHHHHHHHHH-cCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChHHH
Confidence 48999999 9999999998 5543 54544 44442 11122 234888899888887777643
Q ss_pred H
Q psy1497 63 A 63 (127)
Q Consensus 63 ~ 63 (127)
+
T Consensus 84 ~ 84 (179)
T TIGR02322 84 D 84 (179)
T ss_pred H
Confidence 3
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.67 E-value=2.3e-05 Score=54.79 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=21.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING 33 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G 33 (127)
-|.+|||| |||.++|+++ + ..+.+.+.+
T Consensus 5 ~G~~GsGK-STl~~~l~~~-l--~~~~~~v~~ 32 (198)
T cd02023 5 AGGSGSGK-TTVAEEIIEQ-L--GNPKVVIIS 32 (198)
T ss_pred ECCCCCCH-HHHHHHHHHH-h--CCCCeEEEE
Confidence 48899999 9999999998 6 334444433
No 426
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.67 E-value=7.2e-05 Score=51.82 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=14.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |+++.+|.-.
T Consensus 28 ~G~NGsGK-Snil~Ai~~~ 45 (178)
T cd03239 28 VGPNGSGK-SNIVDAICFV 45 (178)
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999888543
No 427
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.61 E-value=6.2e-05 Score=53.84 Aligned_cols=61 Identities=5% Similarity=0.045 Sum_probs=37.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC--CcceEEE---CCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG--TEGSITI---NGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~--~~G~i~i---~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
-|.+|||| |||.+.|.+. +.+ .++.|.+ +|.-...... ...+.+ +...+++.+.+...+.+
T Consensus 5 ~G~sGSGK-TTla~~L~~~-l~~~~~~~~v~vi~~D~f~~~~~~~-~~~~~~-~~~g~p~~~d~~~l~~~ 70 (220)
T cd02025 5 AGSVAVGK-STTARVLQAL-LSRWPDHPNVELITTDGFLYPNKEL-IERGLM-DRKGFPESYDMEALLKF 70 (220)
T ss_pred eCCCCCCH-HHHHHHHHHH-HhhcCCCCcEEEEecCcccCcHHHH-HHhhhh-hcCCCcccCCHHHHHHH
Confidence 48899999 9999999999 664 4566655 5543332222 234444 44444555555555444
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.53 E-value=2.6e-05 Score=55.02 Aligned_cols=61 Identities=8% Similarity=-0.069 Sum_probs=35.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAM 64 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l 64 (127)
-|.+|||| |||++.|+++ +.+ ..+.+..++.-... ...+...++.+|.+..++...+.+.+
T Consensus 12 ~G~sGsGK-STl~~~l~~~-l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 12 GGGSGSGK-TTVARKIYEQ-LGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHL 75 (207)
T ss_pred ECCCCCCH-HHHHHHHHHH-hcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHH
Confidence 47899999 9999999998 664 22333333321111 11234566677766555544444444
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=6.5e-05 Score=59.51 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=37.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|+|| ||++..|++. +....|. ..++++.++. ...++.|++.+++...
T Consensus 262 vGpnGvGK-TTTiaKLA~~-~~~~~G~--------------~kV~LI~~Dt---~RigA~EQLr~~Aeil 312 (484)
T PRK06995 262 MGPTGVGK-TTTTAKLAAR-CVMRHGA--------------SKVALLTTDS---YRIGGHEQLRIYGKIL 312 (484)
T ss_pred ECCCCccH-HHHHHHHHHH-HHHhcCC--------------CeEEEEeCCc---cchhHHHHHHHHHHHh
Confidence 37899999 9999999987 5555553 2467777765 4468999998877654
No 430
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.38 E-value=0.0001 Score=54.38 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=31.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~ 52 (127)
-|.+|||| |||.+.|+++ +.+..+.+...+ ++.. ...+...|+.++++
T Consensus 5 ~G~sGsGK-STl~~~L~~l-l~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p 54 (273)
T cd02026 5 AGDSGCGK-STFLRRLTSL-FGSDLVTVICLD-DYHSLDRKGRKETGITALDP 54 (273)
T ss_pred ECCCCCCH-HHHHHHHHHh-hCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence 37899999 9999999999 777777554433 3321 22234456665543
No 431
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.37 E-value=8.1e-05 Score=52.16 Aligned_cols=48 Identities=8% Similarity=-0.025 Sum_probs=34.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEecChhhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHERNLSQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~~~~~~r~~ig~v~q~~ 52 (127)
-|.+|||| |||.+.|.+. +.+ ..|.+.++|.++... +...++|.+|+.
T Consensus 30 ~G~~GsGK-STla~~l~~~-l~~~~~~~~~ld~d~~~~~-~~~~~~~~~~~~ 78 (198)
T PRK03846 30 TGLSGSGK-STVAGALEEA-LHELGVSTYLLDGDNVRHG-LCSDLGFSDADR 78 (198)
T ss_pred ECCCCCCH-HHHHHHHHHH-HHhCCCCEEEEcCEeHHhh-hhhcCCcCcccH
Confidence 47899999 9999999997 544 356899998775421 223467777754
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.31 E-value=0.00037 Score=54.70 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=37.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe---cC--------hhhhcceEEEEeeC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE---RN--------LSQFRKLSCYIMQD 51 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~---~~--------~~~~r~~ig~v~q~ 51 (127)
-|.+|+|| |||+++|+++ ..++.|.|.+.|+. +. ...+++.+.++.+.
T Consensus 164 ~G~sG~GK-StLl~~I~~~-~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 164 FAGSGVGK-STLMGMIARN-TSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred ECCCCCCH-HHHHHHHhcc-cCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 47899999 9999999999 89999999986543 22 12356778888764
No 433
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.00064 Score=57.81 Aligned_cols=37 Identities=19% Similarity=-0.090 Sum_probs=28.9
Q ss_pred HHHHHhCCCc-cCCC--CCCCHHHHHHHHH----hc---CCceee--cC
Q psy1497 91 HFLHLSGHLP-RGTL--LNLSGLWGIGVFN----VL---SPLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~-~~~~--~~LSgG~rqrv~l----~~---~P~vl~--~~ 127 (127)
++++.+||.. ..++ .+||+||+||+.| +. +|++++ ||
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEP 858 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEP 858 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECC
Confidence 7788899975 3455 9999999999954 44 588877 77
No 434
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.29 E-value=0.00066 Score=57.82 Aligned_cols=72 Identities=21% Similarity=0.058 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHhcccCcc-cc-HHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----hcCC--ce
Q psy1497 55 HANLTVEEAMNVATALKLGKD-LT-KAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----VLSP--LA 123 (127)
Q Consensus 55 ~~~ltv~e~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~~~P--~v 123 (127)
+..++|.|.+.|...+..... .. .......+..+. ++++.+||... +++ .+|||||+|||+| +.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 456789998888544321100 00 000111111111 35788899765 566 9999999999964 5676 66
Q ss_pred ee--cC
Q psy1497 124 TY--EP 127 (127)
Q Consensus 124 l~--~~ 127 (127)
++ ||
T Consensus 513 lILDEP 518 (943)
T PRK00349 513 YVLDEP 518 (943)
T ss_pred EEecCC
Confidence 66 77
No 435
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.27 E-value=1.1e-05 Score=55.46 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=23.4
Q ss_pred CCCCCCChHHHHHHHHh---CCCCCCCcceEEE
Q psy1497 2 RKNFGSDIDKYLLQTSG---RIKTSGTEGSITI 31 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~---gl~~~~~~G~i~i 31 (127)
-|.+|||| ||+.+.|+ |+ ..++.|++..
T Consensus 9 ~G~~GsGK-sTl~~~l~~~~g~-~~~~~g~~~~ 39 (188)
T TIGR01360 9 VGGPGSGK-GTQCEKIVEKYGF-THLSTGDLLR 39 (188)
T ss_pred ECCCCCCH-HHHHHHHHHHhCC-cEEeHHHHHH
Confidence 47899999 99999999 88 6778877654
No 436
>KOG0066|consensus
Probab=97.26 E-value=0.00017 Score=56.85 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=67.9
Q ss_pred CCCCCCCChHHHHHHHHhCCCC-CCCcceEEECCEecCh----------hhhcceEEEEeeCcc-----CCCCCCHHHHH
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKT-SGTEGSITINGHERNL----------SQFRKLSCYIMQDNQ-----LHANLTVEEAM 64 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~-~~~~G~i~i~G~~~~~----------~~~r~~ig~v~q~~~-----l~~~ltv~e~l 64 (127)
+-|+.|-|| ||||+-|+..-+ -|..=.|+++.+++-. ..-.+++.++-.+.. ---..|+.|-+
T Consensus 295 LVGPNG~GK-TTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl 373 (807)
T KOG0066|consen 295 LVGPNGMGK-TTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERL 373 (807)
T ss_pred ccCCCCCch-HHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 358999999 999999987621 2444467777665310 000111221111111 11234666655
Q ss_pred HHH-HhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHHH----hcCCceee--cC
Q psy1497 65 NVA-TALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVFN----VLSPLATY--EP 127 (127)
Q Consensus 65 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~l----~~~P~vl~--~~ 127 (127)
.-. ..++. ......+.++. .+|.-+|++. ..++ ..+|||+|.||+| ..+|.+|+ ||
T Consensus 374 ~~v~~ELra---iGA~sAEarAR----RILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEP 439 (807)
T KOG0066|consen 374 KEVADELRA---IGADSAEARAR----RILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEP 439 (807)
T ss_pred HHHHHHHHH---hccccchhHHH----HHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCC
Confidence 432 22331 12223345566 8888899864 3444 9999999999964 56888876 65
No 437
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.00078 Score=57.28 Aligned_cols=68 Identities=21% Similarity=0.048 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHhcccCcccc------HHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----hcCC
Q psy1497 55 HANLTVEEAMNVATALKLGKDLT------KAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----VLSP 121 (127)
Q Consensus 55 ~~~ltv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~~~P 121 (127)
+..||+.|.+.|...+....... ..+..+++ +++..+||... +++ .+|||||+||+.| +.+|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-----~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-----GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-----HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCC
Confidence 34678888888765542110000 01111222 34677888754 466 9999999999964 5565
Q ss_pred --ceee--cC
Q psy1497 122 --LATY--EP 127 (127)
Q Consensus 122 --~vl~--~~ 127 (127)
++++ ||
T Consensus 507 ~~~llILDEP 516 (924)
T TIGR00630 507 TGVLYVLDEP 516 (924)
T ss_pred CCcEEEEcCC
Confidence 6766 77
No 438
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.24 E-value=0.00067 Score=53.30 Aligned_cols=91 Identities=18% Similarity=0.066 Sum_probs=51.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECC---EecCh---hhh---cceEEEE-----eeCc--cCCCCCCHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITING---HERNL---SQF---RKLSCYI-----MQDN--QLHANLTVEEAM 64 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G---~~~~~---~~~---r~~ig~v-----~q~~--~l~~~ltv~e~l 64 (127)
-+.+|+|| |||+++|++. .+. +.|.|.+.| +++.. ..+ ....+++ +|.+ .+.+.+ +...+
T Consensus 170 ~G~sG~GK-StLl~~I~~~-~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~-va~~I 246 (442)
T PRK06315 170 FAGAGVGK-SSLLGMIARN-AEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAY-VGTAI 246 (442)
T ss_pred ECCCCCCc-chHHHHhhcc-cccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHH-HHHHH
Confidence 36899999 9999999998 643 446666644 44321 111 1234555 7764 234443 44444
Q ss_pred HHHHhcccCccccHHHHHhhhccchHHHHHHhCCC
Q psy1497 65 NVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL 99 (127)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 99 (127)
.-..+.+....+...+...++. ++++.+++.
T Consensus 247 AE~~r~~g~~Vl~~~Ds~tR~a----~alreV~L~ 277 (442)
T PRK06315 247 AEYFRDQGKTVVLMMDSVTRFA----RALREVGLA 277 (442)
T ss_pred HHHHHHcCCCcchhhhHHHHHH----HHHHHhCcC
Confidence 4333322111112234456676 899999994
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00022 Score=49.89 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCC------------CCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS------------GTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~------------~~~G~i~i~G~~ 35 (127)
-|++|||| |||+++|++. .+ |..|+ ++|.+
T Consensus 11 ~G~sGsGK-stl~~~l~~~-~~~~~~~~~~~tr~p~~ge--~~g~~ 52 (205)
T PRK00300 11 SGPSGAGK-STLVKALLER-DPNLQLSVSATTRAPRPGE--VDGVD 52 (205)
T ss_pred ECCCCCCH-HHHHHHHHhh-CccceeccCccccCCCCCC--cCCCe
Confidence 47899999 9999999998 64 66677 46665
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00074 Score=47.44 Aligned_cols=33 Identities=12% Similarity=-0.094 Sum_probs=24.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~ 36 (127)
-|++|||| ||+++.+.+. +.+ ..|.|...+.++
T Consensus 7 ~GptGSGK-TTll~~ll~~-~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 7 TGPTGSGK-STTLAAMIDY-INKNKTHHILTIEDPI 40 (198)
T ss_pred ECCCCCCH-HHHHHHHHHH-hhhcCCcEEEEEcCCc
Confidence 47899999 9999998887 553 467776655544
No 441
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.20 E-value=0.0016 Score=49.71 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=42.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-cChhhhcceEEEEee-CccCCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-RNLSQFRKLSCYIMQ-DNQLHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-~~~~~~r~~ig~v~q-~~~l~~~ltv~e~l~~~~~~~ 71 (127)
-|..|||| |||+++|++. ++++.+-|.+.... +.... ...+.+..+ +..-....|..+.+....+..
T Consensus 168 ~G~tGSGK-TTll~aLl~~-i~~~~rivtiEd~~El~l~~-~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~ 236 (344)
T PRK13851 168 CGPTGSGK-TTMSKTLISA-IPPQERLITIEDTLELVIPH-ENHVRLLYSKNGAGLGAVTAEHLLQASLRMR 236 (344)
T ss_pred ECCCCccH-HHHHHHHHcc-cCCCCCEEEECCCccccCCC-CCEEEEEeeccccCcCccCHHHHHHHHhcCC
Confidence 37899999 9999999999 78888877775532 22111 122333222 222234568888877766543
No 442
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.17 E-value=0.00032 Score=49.04 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING 33 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G 33 (127)
-|.+|+|| |||+|+|+|. ..++.|.+..+.
T Consensus 7 ~G~~g~GK-SSLin~L~g~-~~~~~~~~~~~~ 36 (197)
T cd04104 7 TGESGAGK-SSFINALRGV-GHEEEGAAPTGV 36 (197)
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCCCccccCc
Confidence 37899999 9999999998 677778776653
No 443
>PLN02796 D-glycerate 3-kinase
Probab=97.14 E-value=0.00035 Score=53.21 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=28.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecCh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNL 38 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~ 38 (127)
-|.+|||| |||++.|.++ +.+. .|.|.+++..+..
T Consensus 106 ~G~sGSGK-STLa~~L~~l-L~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 106 SAPQGCGK-TTLVFALVYL-FNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred ECCCCCcH-HHHHHHHHHH-hcccCCceeEEEECCcccch
Confidence 37899999 9999999999 6653 6888999887643
No 444
>PRK08149 ATP synthase SpaL; Validated
Probab=97.10 E-value=0.00075 Score=52.84 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=38.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCc---ceEEECCEecCh-------hhhcceEEEEeeCccCC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTE---GSITINGHERNL-------SQFRKLSCYIMQDNQLH 55 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~---G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~ 55 (127)
+.+|+|| |||+++|++. ..++. |.|-+.|+++.. ...++++++|+....-.
T Consensus 158 G~sG~GK-TTLl~~i~~~-~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p 218 (428)
T PRK08149 158 ASAGCGK-TSLMNMLIEH-SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFS 218 (428)
T ss_pred CCCCCCh-hHHHHHHhcC-CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCC
Confidence 6899999 9999999999 78876 888889988532 11235788888765433
No 445
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.00094 Score=58.73 Aligned_cols=48 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCCCCCChHHHHHHHH----hCCCCCCC-cceEEECCEecCh-hhhcceEEEEeeC
Q psy1497 2 RKNFGSDIDKYLLQTS----GRIKTSGT-EGSITINGHERNL-SQFRKLSCYIMQD 51 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l----~gl~~~~~-~G~i~i~G~~~~~-~~~r~~ig~v~q~ 51 (127)
-|++|||| ||++.+| +|. .+|. .|.++|.+..+.. ...+..|.++|++
T Consensus 34 ~G~NGaGK-TTil~ai~~al~G~-~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 34 VGPNGAGK-TTIIECLKYICTGD-FPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD 87 (1311)
T ss_pred ECCCCCCH-HHHHHHHHHHhcCC-CCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence 48999999 9999999 598 7874 7888887765432 3345556666643
No 446
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.07 E-value=0.00098 Score=51.08 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=36.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--CCcc-eEEECCEecC--hhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--GTEG-SITINGHERN--LSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~~~G-~i~i~G~~~~--~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
-|+.|||| ||++++|++. +. +..+ .|...+.++. ....+...+++.|...--...+..+.+.-.
T Consensus 140 ~GpTGSGK-TTtL~aLl~~-i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 140 TGATGSGK-STLLAAIIRE-LAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHH
Confidence 37899999 9999999998 54 2333 5554443332 223333457777764321223444444433
No 447
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.06 E-value=0.00093 Score=45.05 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCCChHHHHHHHHhCCC---CCCCcc----eEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIK---TSGTEG----SITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~---~~~~~G----~i~i~G~~~ 36 (127)
|++|||| |||++.+.+.. ..|+.| .+.++|..+
T Consensus 21 G~~g~GK-StLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 21 GLDNAGK-TTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred ccCCCCH-HHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 7899999 99999999962 247788 788877653
No 448
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.01 E-value=0.0014 Score=51.26 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=40.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe---cCh--hhh----cceEEEEeeCccCCCCCCH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE---RNL--SQF----RKLSCYIMQDNQLHANLTV 60 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~---~~~--~~~----r~~ig~v~q~~~l~~~ltv 60 (127)
-|.+|+|| |||+++|++. ..++.|.+...|.. +.. +.. ....++++++...+|.++.
T Consensus 151 ~G~sG~GK-StLl~~I~~~-~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r 216 (422)
T TIGR02546 151 FAGAGVGK-STLLGMIARG-ASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLER 216 (422)
T ss_pred ECCCCCCh-HHHHHHHhCC-CCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHH
Confidence 37899999 9999999999 89999988886554 211 011 1235677777766666533
No 449
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.95 E-value=0.0006 Score=48.06 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQ 53 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~ 53 (127)
-|+.|||| |||++.+.+. +.+..+ +.+...+.. ...+....++++|+..
T Consensus 7 ~G~~GsGK-TTll~~l~~~-l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 58 (199)
T TIGR00101 7 AGPVGSGK-TALIEALTRA-LRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERI 58 (199)
T ss_pred ECCCCCCH-HHHHHHHHHh-hCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCce
Confidence 37899999 9999999998 666545 444333431 1223345677776543
No 450
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.93 E-value=0.0013 Score=51.87 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCc---ceEEECCEecCh------hhhcceEEEEeeCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTE---GSITINGHERNL------SQFRKLSCYIMQDNQ 53 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~---G~i~i~G~~~~~------~~~r~~ig~v~q~~~ 53 (127)
+.+|+|| |||+++|+++ ..++. |.|-+.|.++.. ..-....++|+|+..
T Consensus 182 G~sG~GK-TTLL~~Ia~~-~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 182 AGSGVGK-SVLLGMMARY-TQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred CCCCCCc-cHHHHHHhCC-CCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 6899999 9999999999 78875 889999988632 111235777877643
No 451
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.86 E-value=0.00042 Score=49.44 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=35.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
-|++|||| ||+++++++..+-...| ..+... +..++++.| +|+.+++.+++..+
T Consensus 36 ~Gpn~sGK-stllr~i~~~~~l~~~g------~~vp~~--~~~i~~~~~---i~~~~~~~~~ls~g 89 (216)
T cd03284 36 TGPNMAGK-STYLRQVALIALLAQIG------SFVPAS--KAEIGVVDR---IFTRIGASDDLAGG 89 (216)
T ss_pred ECCCCCCh-HHHHHHHHHHHHHhccC------Ceeccc--cceecceee---EeccCCchhhhccC
Confidence 48999999 99999998762122222 222211 346777765 67888999988754
No 452
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.85 E-value=0.0008 Score=38.80 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=17.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~ 24 (127)
-|.+|||| ||++.++.-+ +.+
T Consensus 29 ~G~nGsGK-STllDAi~~~-L~~ 49 (62)
T PF13555_consen 29 TGPNGSGK-STLLDAIQTV-LYG 49 (62)
T ss_pred ECCCCCCH-HHHHHHHHHH-HcC
Confidence 37899999 9999998876 444
No 453
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.82 E-value=0.0054 Score=46.75 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=42.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-cChhhhcceEEEEeeCccC--CCCCCHHHHHHHHHhcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDNQL--HANLTVEEAMNVATALK 71 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-~~~~~~r~~ig~v~q~~~l--~~~ltv~e~l~~~~~~~ 71 (127)
|..|||| |||++.++++ ++|+.+.|.+.+.. +... ....+.+..+..+. -...|..+.+....+.+
T Consensus 185 G~tGsGK-TTll~al~~~-i~~~~riv~iEd~~El~~~-~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~ 253 (340)
T TIGR03819 185 GGTGSGK-TTLLSALLAL-VAPDERIVLVEDAAELRPD-HPHVVRLEARPANVEGAGAVTLTDLVRQALRMR 253 (340)
T ss_pred CCCCCCH-HHHHHHHHcc-CCCCCcEEEECCcceecCC-CCCeeeEEeccccccCcCccCHHHHHHHHhccC
Confidence 6789999 9999999999 89999999987642 3221 12234444333221 12456677666655543
No 454
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.81 E-value=0.00097 Score=45.64 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=17.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI 31 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i 31 (127)
-|++|+|| |||+|.|.+- .....|+|.-
T Consensus 41 ~G~SGvGK-SSLiN~L~~~-~~~~t~~is~ 68 (161)
T PF03193_consen 41 LGQSGVGK-SSLINALLPE-AKQKTGEISE 68 (161)
T ss_dssp ECSTTSSH-HHHHHHHHTS-S----S----
T ss_pred ECCCCCCH-HHHHHHHHhh-cchhhhhhhc
Confidence 37899999 9999999998 5555666643
No 455
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.75 E-value=0.0012 Score=51.77 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=28.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecCh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERNL 38 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~~ 38 (127)
-|.+|||| |||.+.|.++ +.+. .|.|.+|+..+..
T Consensus 218 sG~qGSGK-STLa~~L~~l-L~~~g~~vgvISiDDfYLt~ 255 (460)
T PLN03046 218 SAPQGCGK-TTLVFALDYL-FRVTGRKSATLSIDDFYLTA 255 (460)
T ss_pred ECCCCCCH-HHHHHHHHHH-hcccCCceEEEEECCccCCh
Confidence 37899999 9999999998 6654 7888999887643
No 456
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.74 E-value=0.0021 Score=44.09 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=24.1
Q ss_pred CCCCCChHHHHHHHHhCCC-------CCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-------TSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-------~~~~~G~i~i~G~~ 35 (127)
|..|||| |||++.+.+-. ..++.+++.+++.+
T Consensus 26 G~~~~GK-StLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 26 GLDNAGK-TTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred CCCCCCH-HHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence 7899999 99999999821 34556777777654
No 457
>KOG0063|consensus
Probab=96.74 E-value=0.0011 Score=52.08 Aligned_cols=34 Identities=12% Similarity=-0.317 Sum_probs=25.5
Q ss_pred HHHHHhCCCccCCC--CCCCHHHHHHHHH----hcCCcee
Q psy1497 91 HFLHLSGHLPRGTL--LNLSGLWGIGVFN----VLSPLAT 124 (127)
Q Consensus 91 ~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~~~P~vl 124 (127)
++++.+.|....++ .+||||+-||.++ ++..++-
T Consensus 196 ~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advy 235 (592)
T KOG0063|consen 196 EVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVY 235 (592)
T ss_pred HHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhccee
Confidence 67777778777777 9999999999875 3455553
No 458
>PRK07429 phosphoribulokinase; Provisional
Probab=96.73 E-value=0.0011 Score=50.32 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=30.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE-EECCEecChhhhcceEEEEeeC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI-TINGHERNLSQFRKLSCYIMQD 51 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i-~i~G~~~~~~~~r~~ig~v~q~ 51 (127)
-|.+|||| ||+.+.|+++ +.++.+.+ ..++.-......++.+|+.+++
T Consensus 14 ~G~SGSGK-STla~~L~~l-l~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~ 62 (327)
T PRK07429 14 AGDSGCGK-TTFLRGLADL-LGEELVTVICTDDYHSYDRKQRKELGITALD 62 (327)
T ss_pred ECCCCCCH-HHHHHHHHhH-hccCceEEEEecccccCCHHHHHhcCCcccC
Confidence 37899999 9999999999 77776544 4444311112234445654443
No 459
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.73 E-value=0.0011 Score=44.59 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=17.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~ 24 (127)
|+++||| |||+|.|.|..+.|
T Consensus 5 G~~ssGK-STliNaLlG~~ilp 25 (168)
T PF00350_consen 5 GQFSSGK-STLINALLGRPILP 25 (168)
T ss_dssp EBTTSSH-HHHHHHHHTSS-SS
T ss_pred cCCCCCH-HHHHHHHHhcccCc
Confidence 7899999 99999999984344
No 460
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.68 E-value=0.00091 Score=44.20 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=20.6
Q ss_pred CCCCCCChHHHHHHHHh--CCCCCCCcceE
Q psy1497 2 RKNFGSDIDKYLLQTSG--RIKTSGTEGSI 29 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~--gl~~~~~~G~i 29 (127)
-|.+|||| |||++.|+ +. ..+.+|++
T Consensus 5 ~G~~g~GK-TtL~~~l~~~~~-~~~~~~~~ 32 (170)
T cd01876 5 AGRSNVGK-SSLINALTNRKK-LARTSKTP 32 (170)
T ss_pred EcCCCCCH-HHHHHHHhcCCc-eeeecCCC
Confidence 47899999 99999999 55 55666653
No 461
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.67 E-value=0.0015 Score=57.97 Aligned_cols=32 Identities=3% Similarity=-0.124 Sum_probs=28.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
.|.+|||| ||+|++|+++ +.|+.|.+.+++.+
T Consensus 33 ~G~NGaGK-STll~ai~~~-l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 33 SGGNGAGK-STTMAAFVTA-LIPDLTLLHFRNTT 64 (1486)
T ss_pred ECCCCCCH-HHHHHHHHcc-ccCCCCeEEECCcc
Confidence 48999999 9999999999 78888999888653
No 462
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.66 E-value=0.0014 Score=52.31 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=28.7
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
|.|++|||| |||++.|.|+ .+|.+|++.+....
T Consensus 215 liG~~GsGK-TtLak~L~gl-lpp~~g~e~le~~~ 247 (506)
T PRK09862 215 LIGPPGTGK-TMLASRINGL-LPDLSNEEALESAA 247 (506)
T ss_pred EECCCCCcH-HHHHHHHhcc-CCCCCCcEEEecch
Confidence 358999999 9999999999 89999988876644
No 463
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.64 E-value=0.0021 Score=43.11 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=16.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
=|.+|||| |||++.|++.
T Consensus 2 iG~~~~GK-Stll~~l~~~ 19 (176)
T cd01881 2 VGLPNVGK-STLLNALTNA 19 (176)
T ss_pred CCCCCCcH-HHHHHHHhcC
Confidence 47899999 9999999997
No 464
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.62 E-value=0.00081 Score=55.76 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=16.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
.|++|||| ||+.+.|+..
T Consensus 7 ~G~~GsGK-ST~ak~la~~ 24 (712)
T PRK09518 7 DGPAGVGK-SSVSRALAQY 24 (712)
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 68999999 9999999887
No 465
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.61 E-value=0.0025 Score=45.88 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=24.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-----------CCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-----------GTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-----------~~~G~i~i~G~~ 35 (127)
-|.+|||| |||++.|+|. .. +..|.+.++|..
T Consensus 6 vG~~~~GK-StLl~~Ltg~-~~~v~~~~~tT~~~~~g~~~~~~~~ 48 (233)
T cd01896 6 VGFPSVGK-STLLSKLTNT-KSEVAAYEFTTLTCVPGVLEYKGAK 48 (233)
T ss_pred ECCCCCCH-HHHHHHHHCC-CccccCCCCccccceEEEEEECCeE
Confidence 47899999 9999999997 43 345666666644
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.61 E-value=0.0037 Score=39.61 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=24.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc-ceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE-GSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~-G~i~i~G~~ 35 (127)
-|+.|+|| ||+++.++.. ..... +-+.++...
T Consensus 8 ~G~~G~GK-Ttl~~~l~~~-~~~~~~~~~~~~~~~ 40 (148)
T smart00382 8 VGPPGSGK-TTLARALARE-LGPPGGGVIYIDGED 40 (148)
T ss_pred ECCCCCcH-HHHHHHHHhc-cCCCCCCEEEECCEE
Confidence 48899999 9999999998 55443 456666554
No 467
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.60 E-value=0.0025 Score=44.89 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=17.1
Q ss_pred CCCCCCChHHHHH-HHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLL-QTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl-~~l~gl~~~~ 24 (127)
-|.+|||| |||+ +.+.|. ..+
T Consensus 15 iG~~g~GK-TtLi~~~~~~~-~~~ 36 (215)
T PTZ00132 15 VGDGGVGK-TTFVKRHLTGE-FEK 36 (215)
T ss_pred ECCCCCCH-HHHHHHHHhCC-CCC
Confidence 37899999 9999 688887 543
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.59 E-value=0.0056 Score=46.60 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=25.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~~ 36 (127)
-|+.|||| ||+++.+.+. +. +..+.|...+.++
T Consensus 128 ~G~tGSGK-TT~l~al~~~-i~~~~~~~i~tiEdp~ 161 (343)
T TIGR01420 128 TGPTGSGK-STTLASMIDY-INKNAAGHIITIEDPI 161 (343)
T ss_pred ECCCCCCH-HHHHHHHHHh-hCcCCCCEEEEEcCCh
Confidence 37899999 9999999887 44 4567887665543
No 469
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.55 E-value=0.0022 Score=47.87 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|++|||| |||++.+.+. +....+.+.+.|..
T Consensus 110 ~G~pGsGK-TTLl~~l~~~-l~~~~~~~VI~gD~ 141 (290)
T PRK10463 110 VSSPGSGK-TTLLTETLMR-LKDSVPCAVIEGDQ 141 (290)
T ss_pred ECCCCCCH-HHHHHHHHHH-hccCCCEEEECCCc
Confidence 37899999 9999999987 66666777776643
No 470
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.49 E-value=0.0027 Score=49.65 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
+.+|+|| |||+++|++. ..++.|.|.+.|+.
T Consensus 147 G~sG~GK-TtLl~~I~~~-~~~~~gvi~~iGer 177 (418)
T TIGR03498 147 AGSGVGK-STLLSMLARN-TDADVVVIALVGER 177 (418)
T ss_pred CCCCCCh-HHHHHHHhCC-CCCCEEEEEEEeee
Confidence 6899999 9999999999 79999999888875
No 471
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.49 E-value=0.0016 Score=45.13 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC---cceEEECCE
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGT---EGSITINGH 34 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~ 34 (127)
|.+|||| |||++.|... +.+. -|.|...++
T Consensus 13 G~sgsGK-TTLi~~li~~-l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 13 AWSGTGK-TTLLKKLIPA-LCARGIRPGLIKHTHH 45 (173)
T ss_pred CCCCChH-HHHHHHHHHH-HhhcCCeEEEEEEcCC
Confidence 6899999 9999999988 5543 388888665
No 472
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.48 E-value=0.0017 Score=41.30 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|++.
T Consensus 6 G~~~~GK-STlin~l~~~ 22 (116)
T PF01926_consen 6 GRPNVGK-STLINALTGK 22 (116)
T ss_dssp ESTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhcc
Confidence 6799999 9999999985
No 473
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.42 E-value=0.0028 Score=48.00 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|.+|+|| |||+++|++. ..++.|.+...|+.
T Consensus 75 ~G~sG~GK-TtLl~~Ia~~-~~~~~~vi~~iGer 106 (326)
T cd01136 75 FAGSGVGK-STLLGMIARG-TTADVNVIALIGER 106 (326)
T ss_pred ECCCCCCh-HHHHHHHhCC-CCCCEEEEEEEecC
Confidence 36899999 9999999999 78998888776643
No 474
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.40 E-value=0.0032 Score=49.52 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
+.+|+|| |||++++++. ..++.|.|.+.|+.
T Consensus 170 G~sG~GK-TtLl~~ia~~-~~~d~~vi~~iGer 200 (441)
T PRK09099 170 APAGVGK-STLMGMFARG-TQCDVNVIALIGER 200 (441)
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCeEEEEEEccC
Confidence 6899999 9999999999 78999999888854
No 475
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.38 E-value=0.0022 Score=43.23 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-|.+|||| ||+.+.|++. + |.+++++.++
T Consensus 4 ~G~~GsGK-STla~~l~~~-l----~~~~v~~D~~ 32 (163)
T TIGR01313 4 MGVAGSGK-STIASALAHR-L----GAKFIEGDDL 32 (163)
T ss_pred ECCCCCCH-HHHHHHHHHh-c----CCeEEeCccc
Confidence 58999999 9999999988 4 4566776554
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.0022 Score=40.91 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=16.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| ||+.+.|+-.
T Consensus 5 ~G~~gsGK-ST~a~~La~~ 22 (121)
T PF13207_consen 5 SGPPGSGK-STLAKELAER 22 (121)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999876
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.32 E-value=0.0022 Score=45.08 Aligned_cols=19 Identities=16% Similarity=-0.088 Sum_probs=17.4
Q ss_pred CCCCCCChHHHHHHHHhCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT 22 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~ 22 (127)
-|.+|||| |||.+.|++. +
T Consensus 12 ~G~sGsGK-TTl~~~l~~~-l 30 (209)
T PRK05480 12 AGGSGSGK-TTVASTIYEE-L 30 (209)
T ss_pred ECCCCCCH-HHHHHHHHHH-h
Confidence 47899999 9999999998 6
No 478
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.32 E-value=0.0031 Score=50.39 Aligned_cols=32 Identities=16% Similarity=-0.014 Sum_probs=28.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|++|+|| |||++.+.++ .+|.+|++.+.+..
T Consensus 217 iG~pGsGK-Ttlar~l~~l-lp~~~~~~~le~~~ 248 (499)
T TIGR00368 217 FGPPGSGK-TMLASRLQGI-LPPLTNEEAIETAR 248 (499)
T ss_pred EecCCCCH-HHHHHHHhcc-cCCCCCcEEEeccc
Confidence 57899999 9999999999 89999988876554
No 479
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.25 E-value=0.0035 Score=49.22 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
+.+|+|| |||+++|++. ..++.|.+.+.|+.
T Consensus 162 G~sG~GK-STLL~~I~~~-~~~d~~vi~~iGeR 192 (433)
T PRK07594 162 SAPGVGK-STLLAMLCNA-PDADSNVLVLIGER 192 (433)
T ss_pred CCCCCCc-cHHHHHhcCC-CCCCEEEEEEECCC
Confidence 6899999 9999999999 79999888777754
No 480
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.25 E-value=0.0045 Score=48.35 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-+.+|+|| |||+++|++. ..++.|.|.+.|+..
T Consensus 143 ~G~sG~GK-TtLl~~i~~~-~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 143 FAGSGVGK-STLLGMIARN-AKADINVIALIGERG 175 (413)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCeEEEEEEccch
Confidence 47899999 9999999999 789999888888653
No 481
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.22 E-value=0.0022 Score=45.86 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=22.3
Q ss_pred CCCCCCChHHHHHHHHh---CCCCCCCcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSG---RIKTSGTEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~---gl~~~~~~G~i~ 30 (127)
-|++|||| ||+.+.|+ |+ ..+++|.++
T Consensus 8 ~G~~GsGK-st~~~~la~~~~~-~~~~~g~~~ 37 (217)
T TIGR00017 8 DGPSGAGK-STVAKAVAEKLGY-AYLDSGAMY 37 (217)
T ss_pred ECCCCCCH-HHHHHHHHHHhCC-ceeeCchHH
Confidence 47999999 99999999 55 457888774
No 482
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.19 E-value=0.0027 Score=41.87 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=26.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|++|+|| ||+++.+++. ..+..+.|.+...+
T Consensus 5 ~G~~G~GK-T~l~~~i~~~-~~~~~~~v~~~~~e 36 (165)
T cd01120 5 FGPTGSGK-TTLALQLALN-IATKGGKVVYVDIE 36 (165)
T ss_pred eCCCCCCH-HHHHHHHHHH-HHhcCCEEEEEECC
Confidence 47899999 9999999998 66677788775554
No 483
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.14 E-value=0.0046 Score=44.92 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHHhCCC-CCCCcceEEE
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-TSGTEGSITI 31 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-~~~~~G~i~i 31 (127)
|.+|||| ||++++|+|+. .+..+|.++-
T Consensus 33 G~~~~GK-St~l~~i~g~~~~~~~~g~~t~ 61 (240)
T smart00053 33 GGQSAGK-SSVLENFVGRDFLPRGSGIVTR 61 (240)
T ss_pred cCCCccH-HHHHHHHhCCCccccCCCcccc
Confidence 7899999 99999999983 2345676653
No 484
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0014 Score=44.82 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=24.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE-ECCE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT-INGH 34 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~-i~G~ 34 (127)
.|.+|||| ||+.+.|++. +.+..+.+. +++.
T Consensus 10 ~G~~GsGK-ST~a~~la~~-l~~~g~~v~~id~D 41 (175)
T PRK00889 10 TGLSGAGK-TTIARALAEK-LREAGYPVEVLDGD 41 (175)
T ss_pred ECCCCCCH-HHHHHHHHHH-HHHcCCeEEEEcCc
Confidence 58899999 9999999998 665555554 5653
No 485
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.12 E-value=0.0054 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=27.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|.+|+|| |||+++|++. ..++.|.+...|+.
T Consensus 169 ~G~sG~GK-StLl~~I~~~-~~~~~~vi~~iG~r 200 (440)
T TIGR01026 169 FAGSGVGK-STLLGMIARN-TEADVNVIALIGER 200 (440)
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCEEEEEEEeec
Confidence 37899999 9999999999 78888877776654
No 486
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.10 E-value=0.0064 Score=54.91 Aligned_cols=36 Identities=19% Similarity=-0.102 Sum_probs=27.5
Q ss_pred HHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCC--ceee--cC
Q psy1497 92 FLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSP--LATY--EP 127 (127)
Q Consensus 92 ~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P--~vl~--~~ 127 (127)
.|..+||... .++ .+|||||+||++ |+.+| ++++ ||
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEP 505 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEP 505 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 4567788765 466 999999999995 56788 5655 77
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.10 E-value=0.0049 Score=40.79 Aligned_cols=21 Identities=14% Similarity=-0.092 Sum_probs=18.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~ 24 (127)
-|++|||| |||++.|+.. +++
T Consensus 5 ~GpsGsGK-stl~~~L~~~-~~~ 25 (137)
T cd00071 5 SGPSGVGK-STLLKRLLEE-FDP 25 (137)
T ss_pred ECCCCCCH-HHHHHHHHhc-CCc
Confidence 48999999 9999999998 543
No 488
>PRK12288 GTPase RsgA; Reviewed
Probab=96.10 E-value=0.0036 Score=47.85 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=22.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~ 30 (127)
-|.+|+|| |||+|.|.+- .....|+|.
T Consensus 211 vG~sgVGK-STLiN~Ll~~-~~~~t~~is 237 (347)
T PRK12288 211 VGQSGVGK-SSLINALLPE-AEILVGDVS 237 (347)
T ss_pred ECCCCCCH-HHHHHHhccc-cceeecccc
Confidence 37899999 9999999998 566677774
No 489
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.10 E-value=0.0029 Score=44.38 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||+++|++.
T Consensus 35 ~G~Ng~GK-Stll~~i~~~ 52 (202)
T cd03243 35 TGPNMGGK-STYLRSIGLA 52 (202)
T ss_pred ECCCCCcc-HHHHHHHHHH
Confidence 48899999 9999999954
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.09 E-value=0.0045 Score=42.27 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=16.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||++.|++.
T Consensus 7 ~G~~GsGK-sTl~~~L~~~ 24 (180)
T TIGR03263 7 SGPSGVGK-STLVKALLEE 24 (180)
T ss_pred ECCCCCCH-HHHHHHHHcc
Confidence 48999999 9999999997
No 491
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.07 E-value=0.0026 Score=43.50 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=25.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~ 35 (127)
-|.+|||| ||+.+.|... +. +..|.+.+++..
T Consensus 13 ~G~~GsGK-st~a~~l~~~-l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 13 TGLAGSGK-TTIAKALYER-LKLKYSNVIYLDGDE 45 (176)
T ss_pred EcCCCCCH-HHHHHHHHHH-HHHcCCcEEEEecHH
Confidence 47899999 9999999887 43 556778887643
No 492
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.06 E-value=0.0065 Score=47.72 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-+.+|+|| |||+++|++. ..++.|.|.+.|+.
T Consensus 162 ~G~sG~GK-TtLl~~Ia~~-~~~~~gvI~~iGer 193 (432)
T PRK06793 162 FAGSGVGK-STLLGMIAKN-AKADINVISLVGER 193 (432)
T ss_pred ECCCCCCh-HHHHHHHhcc-CCCCeEEEEeCCCC
Confidence 36899999 9999999999 79999999887765
No 493
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.03 E-value=0.0043 Score=45.10 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEE-C--CEecCh--hhhcceEEEEeeCccCC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITI-N--GHERNL--SQFRKLSCYIMQDNQLH 55 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i-~--G~~~~~--~~~r~~ig~v~q~~~l~ 55 (127)
|.+|+|| |||+|.|.+- .....|+|.- . |+.... ..+.-.-|++.+.|.+-
T Consensus 127 G~sgvGK-StLiN~L~~~-~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~ 182 (245)
T TIGR00157 127 GQSGVGK-SSLINALDPS-VKQQVNDISSKLGLGKHTTTHVELFHFHGGLIADTPGFN 182 (245)
T ss_pred CCCCCCH-HHHHHHHhhh-hhccccceeccCCCCCCcCCceEEEEcCCcEEEeCCCcc
Confidence 7899999 9999999998 6777787753 2 332221 11111346788877654
No 494
>PRK05922 type III secretion system ATPase; Validated
Probab=96.02 E-value=0.007 Score=47.57 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
+.+|+|| |||+++|++. ..++.|.+...|+.
T Consensus 164 G~nG~GK-STLL~~Ia~~-~~~d~gvi~liGer 194 (434)
T PRK05922 164 SEPGSGK-SSLLSTIAKG-SKSTINVIALIGER 194 (434)
T ss_pred CCCCCCh-HHHHHHHhcc-CCCCceEEEEeCCC
Confidence 6899999 9999999999 78999988766653
No 495
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.0074 Score=45.96 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEEC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITIN 32 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~ 32 (127)
|-.|||| |||+|+|+++ +++++--|.+.
T Consensus 180 GGTGSGK-TTlLNal~~~-i~~~eRvItiE 207 (355)
T COG4962 180 GGTGSGK-TTLLNALSGF-IDSDERVITIE 207 (355)
T ss_pred CCCCCCH-HHHHHHHHhc-CCCcccEEEEe
Confidence 5579999 9999999999 78888444553
No 496
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.00 E-value=0.0047 Score=40.57 Aligned_cols=18 Identities=11% Similarity=-0.182 Sum_probs=16.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||++.++|.
T Consensus 9 ~G~~g~GK-ttl~~~l~~~ 26 (168)
T cd04163 9 VGRPNVGK-STLLNALVGQ 26 (168)
T ss_pred ECCCCCCH-HHHHHHHhCC
Confidence 37899999 9999999987
No 497
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.00 E-value=0.0044 Score=40.45 Aligned_cols=17 Identities=12% Similarity=-0.158 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| |||++.+.+.
T Consensus 6 G~~~~GK-ssl~~~l~~~ 22 (159)
T cd04159 6 GLQNSGK-TTLVNVIAGG 22 (159)
T ss_pred cCCCCCH-HHHHHHHccC
Confidence 7899999 9999999997
No 498
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.99 E-value=0.0052 Score=35.84 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| ||+.+.|...
T Consensus 5 ~G~~gsGK-st~~~~l~~~ 22 (69)
T cd02019 5 TGGSGSGK-STVAKKLAEQ 22 (69)
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999987
No 499
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.91 E-value=0.0053 Score=41.21 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=21.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC-cceEEECCE
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGT-EGSITINGH 34 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~-~G~i~i~G~ 34 (127)
|+.|||| |||++.|.|...... .=.|.+.+.
T Consensus 8 G~~g~GK-TTL~q~L~~~~~~~~KTq~i~~~~~ 39 (143)
T PF10662_consen 8 GPSGSGK-TTLAQALNGEEIRYKKTQAIEYYDN 39 (143)
T ss_pred CCCCCCH-HHHHHHHcCCCCCcCccceeEeccc
Confidence 7899999 999999999832332 224555443
No 500
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.87 E-value=0.0041 Score=47.35 Aligned_cols=26 Identities=4% Similarity=0.021 Sum_probs=22.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI 29 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i 29 (127)
.|.+|+|| |||+++++++ .++..|.+
T Consensus 31 ~G~~G~gK-ttl~r~~~~~-~~~~~~~~ 56 (337)
T TIGR02030 31 MGDRGTGK-STAVRALAAL-LPEIKAVA 56 (337)
T ss_pred EcCCCCCH-HHHHHHHHHh-hccccccc
Confidence 57899999 9999999999 77766655
Done!