Query psy1497
Match_columns 127
No_of_seqs 175 out of 1237
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:12:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 8E-32 2.7E-36 204.2 12.8 117 2-127 35-160 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 5.3E-32 1.8E-36 203.9 10.7 116 3-127 37-165 (359)
3 3tui_C Methionine import ATP-b 100.0 1.9E-31 6.4E-36 201.2 13.5 116 3-127 61-190 (366)
4 1z47_A CYSA, putative ABC-tran 100.0 3.4E-31 1.2E-35 199.3 13.2 117 2-127 47-172 (355)
5 2it1_A 362AA long hypothetical 100.0 5.1E-31 1.8E-35 198.8 13.2 117 2-127 35-160 (362)
6 2yyz_A Sugar ABC transporter, 100.0 3.8E-31 1.3E-35 199.4 11.8 117 2-127 35-160 (359)
7 3tif_A Uncharacterized ABC tra 100.0 1.2E-30 4E-35 186.8 13.1 120 2-127 37-172 (235)
8 1g29_1 MALK, maltose transport 100.0 7.8E-31 2.7E-35 198.5 12.8 117 2-127 35-166 (372)
9 1oxx_K GLCV, glucose, ABC tran 100.0 5E-31 1.7E-35 198.4 10.5 117 2-127 37-167 (353)
10 1v43_A Sugar-binding transport 100.0 5.5E-31 1.9E-35 199.3 10.5 117 2-127 43-168 (372)
11 2pcj_A ABC transporter, lipopr 100.0 2.7E-30 9.2E-35 183.7 12.5 117 2-127 36-167 (224)
12 2olj_A Amino acid ABC transpor 100.0 3.9E-30 1.3E-34 186.9 12.9 117 2-127 56-186 (263)
13 1b0u_A Histidine permease; ABC 100.0 3.8E-30 1.3E-34 186.7 11.8 117 2-127 38-180 (262)
14 1vpl_A ABC transporter, ATP-bi 100.0 4.9E-30 1.7E-34 185.7 12.0 117 2-127 47-173 (256)
15 3gfo_A Cobalt import ATP-bindi 100.0 5.6E-30 1.9E-34 187.1 12.1 117 2-127 40-170 (275)
16 3d31_A Sulfate/molybdate ABC t 100.0 2E-30 6.9E-35 194.8 9.5 114 2-127 32-154 (348)
17 2onk_A Molybdate/tungstate ABC 100.0 3.8E-30 1.3E-34 184.7 9.4 115 2-127 30-153 (240)
18 1g6h_A High-affinity branched- 100.0 1.2E-29 4.2E-34 183.5 10.4 120 2-127 39-180 (257)
19 1sgw_A Putative ABC transporte 100.0 2.4E-29 8.3E-34 177.8 10.3 112 2-127 41-160 (214)
20 1ji0_A ABC transporter; ATP bi 100.0 4.9E-29 1.7E-33 178.8 9.9 116 2-127 38-166 (240)
21 4g1u_C Hemin import ATP-bindin 100.0 9.5E-29 3.3E-33 179.8 10.8 115 2-127 43-174 (266)
22 2yz2_A Putative ABC transporte 100.0 1.7E-28 5.9E-33 178.3 9.5 116 2-127 39-165 (266)
23 2ixe_A Antigen peptide transpo 99.9 7.7E-28 2.6E-32 175.4 9.8 119 2-127 51-183 (271)
24 2ihy_A ABC transporter, ATP-bi 99.9 5.9E-28 2E-32 176.7 9.1 120 2-127 53-188 (279)
25 2qi9_C Vitamin B12 import ATP- 99.9 1.9E-27 6.6E-32 171.5 9.3 111 2-127 32-160 (249)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 2.2E-27 7.7E-32 171.1 8.8 121 2-127 35-170 (250)
27 2nq2_C Hypothetical ABC transp 99.9 1.4E-26 4.8E-31 167.2 11.2 110 2-127 37-155 (253)
28 2ff7_A Alpha-hemolysin translo 99.9 7.2E-27 2.5E-31 168.2 8.8 110 2-127 41-172 (247)
29 3nh6_A ATP-binding cassette SU 99.9 4E-27 1.4E-31 174.2 7.0 118 2-127 86-217 (306)
30 2zu0_C Probable ATP-dependent 99.9 7.1E-26 2.4E-30 164.7 12.2 120 2-127 52-191 (267)
31 2pjz_A Hypothetical protein ST 99.9 1.4E-26 4.7E-31 168.2 7.8 110 2-127 36-155 (263)
32 1mv5_A LMRA, multidrug resista 99.9 3.5E-26 1.2E-30 164.2 9.2 111 2-127 34-166 (243)
33 3gd7_A Fusion complex of cysti 99.9 2.9E-26 1E-30 174.4 5.0 107 3-127 54-182 (390)
34 2ghi_A Transport protein; mult 99.9 5.4E-25 1.8E-29 159.5 8.1 109 2-127 52-182 (260)
35 3b60_A Lipid A export ATP-bind 99.9 1.6E-24 5.5E-29 171.8 11.3 119 2-127 375-507 (582)
36 4a82_A Cystic fibrosis transme 99.9 4.9E-25 1.7E-29 174.6 7.3 118 2-127 373-504 (578)
37 3b5x_A Lipid A export ATP-bind 99.9 1.5E-24 5E-29 172.0 9.4 111 2-127 375-507 (582)
38 3qf4_A ABC transporter, ATP-bi 99.9 3.6E-25 1.2E-29 175.7 5.8 118 2-127 375-506 (587)
39 2pze_A Cystic fibrosis transme 99.9 3.6E-24 1.2E-28 152.5 9.4 106 2-127 40-157 (229)
40 2yl4_A ATP-binding cassette SU 99.9 2.5E-24 8.5E-29 171.0 8.8 113 2-127 376-510 (595)
41 3qf4_B Uncharacterized ABC tra 99.9 1.5E-24 5E-29 172.5 6.8 118 2-127 387-518 (598)
42 2cbz_A Multidrug resistance-as 99.9 6.1E-24 2.1E-28 152.0 8.0 105 2-127 37-154 (237)
43 4f4c_A Multidrug resistance pr 99.9 1.6E-23 5.5E-28 178.1 9.3 119 3-127 1112-1244(1321)
44 3g5u_A MCG1178, multidrug resi 99.9 8.2E-23 2.8E-27 173.4 9.6 117 3-127 423-553 (1284)
45 4f4c_A Multidrug resistance pr 99.9 1.3E-22 4.5E-27 172.5 10.6 117 3-127 451-581 (1321)
46 2bbs_A Cystic fibrosis transme 99.9 9.2E-23 3.1E-27 149.9 7.1 102 2-127 70-186 (290)
47 3g5u_A MCG1178, multidrug resi 99.9 4.6E-22 1.6E-26 168.8 8.2 119 3-127 1066-1198(1284)
48 3bk7_A ABC transporter ATP-bin 99.8 2.3E-21 7.8E-26 154.5 8.9 103 2-127 388-498 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-21 7.3E-26 152.8 6.8 105 2-127 300-412 (538)
50 1yqt_A RNAse L inhibitor; ATP- 99.8 4.5E-21 1.5E-25 151.0 7.3 103 2-127 318-428 (538)
51 3j16_B RLI1P; ribosome recycli 99.8 3.8E-19 1.3E-23 141.7 8.7 102 3-127 385-494 (608)
52 3bk7_A ABC transporter ATP-bin 99.8 5.3E-20 1.8E-24 146.6 3.2 108 2-127 123-255 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 1E-19 3.5E-24 143.3 4.6 108 2-127 53-185 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.7 7.2E-19 2.5E-23 138.4 3.1 106 3-127 32-165 (538)
55 3sop_A Neuronal-specific septi 99.7 6.6E-21 2.3E-25 138.7 -12.4 100 3-118 9-110 (270)
56 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.8E-19 6.3E-24 139.5 -6.1 107 3-127 145-269 (460)
57 3j16_B RLI1P; ribosome recycli 99.7 5.7E-17 2E-21 129.2 5.7 110 2-127 109-248 (608)
58 3ux8_A Excinuclease ABC, A sub 99.7 3.6E-17 1.2E-21 131.4 4.2 121 3-127 51-231 (670)
59 2iw3_A Elongation factor 3A; a 99.7 4.4E-17 1.5E-21 135.0 4.4 55 2-66 705-763 (986)
60 2iw3_A Elongation factor 3A; a 99.6 3.3E-16 1.1E-20 129.8 5.4 99 2-127 467-575 (986)
61 3aez_A Pantothenate kinase; tr 99.6 6.4E-18 2.2E-22 125.2 -5.3 100 2-127 96-203 (312)
62 2rcn_A Probable GTPase ENGC; Y 99.5 1.9E-15 6.7E-20 113.7 3.8 101 3-119 222-326 (358)
63 3b9q_A Chloroplast SRP recepto 99.5 6.1E-16 2.1E-20 114.1 -2.7 103 2-125 106-226 (302)
64 3b85_A Phosphate starvation-in 99.5 4.6E-17 1.6E-21 114.3 -9.8 95 2-127 28-131 (208)
65 3ux8_A Excinuclease ABC, A sub 99.4 7.6E-14 2.6E-18 112.1 6.1 58 57-127 504-573 (670)
66 1tq4_A IIGP1, interferon-induc 99.4 1E-15 3.4E-20 117.2 -5.2 98 3-125 76-189 (413)
67 2og2_A Putative signal recogni 99.4 3.4E-15 1.1E-19 112.5 -2.5 103 2-125 163-283 (359)
68 2yv5_A YJEQ protein; hydrolase 99.4 4.9E-15 1.7E-19 109.1 -3.5 109 2-120 171-301 (302)
69 2v9p_A Replication protein E1; 99.3 4.5E-15 1.5E-19 109.6 -7.2 87 2-125 132-220 (305)
70 2dpy_A FLII, flagellum-specifi 99.3 2.7E-14 9.2E-19 110.0 -3.5 98 3-123 164-275 (438)
71 1ye8_A Protein THEP1, hypothet 99.3 7.2E-14 2.5E-18 95.7 -1.7 44 2-52 6-52 (178)
72 1rj9_A FTSY, signal recognitio 99.3 6.4E-14 2.2E-18 103.4 -2.7 63 3-67 109-180 (304)
73 2jeo_A Uridine-cytidine kinase 99.3 1.4E-13 4.8E-18 98.1 -1.4 103 2-125 31-138 (245)
74 2r6f_A Excinuclease ABC subuni 99.3 2E-12 6.7E-17 107.1 5.2 37 91-127 827-875 (972)
75 4aby_A DNA repair protein RECN 99.3 5.4E-12 1.9E-16 95.6 6.7 58 3-63 67-166 (415)
76 2vf7_A UVRA2, excinuclease ABC 99.3 1.9E-12 6.4E-17 106.4 4.1 41 83-127 708-760 (842)
77 1znw_A Guanylate kinase, GMP k 99.3 1.6E-15 5.5E-20 105.7 -12.7 106 3-125 27-146 (207)
78 1p9r_A General secretion pathw 99.3 7.2E-15 2.5E-19 112.6 -10.5 118 2-127 173-316 (418)
79 3pih_A Uvrabc system protein A 99.2 8.1E-12 2.8E-16 103.3 6.6 57 58-127 767-835 (916)
80 1z6g_A Guanylate kinase; struc 99.2 1.1E-14 3.6E-19 102.6 -9.7 99 2-117 29-133 (218)
81 1u0l_A Probable GTPase ENGC; p 99.2 5.2E-13 1.8E-17 98.2 -1.1 94 2-108 175-293 (301)
82 1nij_A Hypothetical protein YJ 99.2 2.2E-15 7.4E-20 111.6 -14.0 119 3-127 11-166 (318)
83 1htw_A HI0065; nucleotide-bind 99.2 1E-12 3.5E-17 88.5 -0.1 59 2-66 39-97 (158)
84 2ygr_A Uvrabc system protein A 99.2 6E-12 2E-16 104.5 3.1 37 91-127 845-893 (993)
85 3szr_A Interferon-induced GTP- 99.1 5.9E-12 2E-16 100.4 1.0 66 2-69 51-123 (608)
86 1t9h_A YLOQ, probable GTPase E 99.1 7.5E-13 2.6E-17 97.8 -4.8 104 3-113 180-302 (307)
87 2gza_A Type IV secretion syste 99.1 5.8E-11 2E-15 89.3 5.2 67 2-70 181-251 (361)
88 1e69_A Chromosome segregation 99.1 3.8E-11 1.3E-15 88.7 3.2 18 2-20 30-47 (322)
89 2f1r_A Molybdopterin-guanine d 99.1 4.7E-13 1.6E-17 91.3 -7.5 94 3-123 9-124 (171)
90 1zp6_A Hypothetical protein AT 99.0 3.3E-13 1.1E-17 92.1 -9.2 110 2-126 15-133 (191)
91 3asz_A Uridine kinase; cytidin 99.0 1.7E-12 5.7E-17 90.1 -6.3 93 2-125 12-116 (211)
92 2qnr_A Septin-2, protein NEDD5 99.0 4.4E-13 1.5E-17 98.6 -9.8 64 3-68 25-88 (301)
93 2yhs_A FTSY, cell division pro 98.9 9.5E-11 3.2E-15 91.4 0.2 65 2-68 299-372 (503)
94 3e70_C DPA, signal recognition 98.9 2.4E-10 8.2E-15 85.1 0.5 65 2-68 135-208 (328)
95 4gp7_A Metallophosphoesterase; 98.9 2.5E-10 8.6E-15 77.2 0.5 32 96-127 72-110 (171)
96 1in4_A RUVB, holliday junction 98.9 2.7E-11 9.4E-16 89.9 -5.1 109 2-118 57-174 (334)
97 1s96_A Guanylate kinase, GMP k 98.8 1.1E-11 3.8E-16 87.4 -7.4 62 2-66 22-89 (219)
98 1sq5_A Pantothenate kinase; P- 98.8 4.9E-10 1.7E-14 82.4 0.5 65 2-70 86-155 (308)
99 1qhl_A Protein (cell division 98.7 2.1E-09 7.4E-14 76.2 1.0 47 3-51 34-91 (227)
100 2pt7_A CAG-ALFA; ATPase, prote 98.7 1.7E-08 5.9E-13 75.0 5.2 61 2-69 177-238 (330)
101 3qf7_A RAD50; ABC-ATPase, ATPa 98.7 5.2E-08 1.8E-12 73.3 7.4 23 105-127 278-312 (365)
102 1pzn_A RAD51, DNA repair and r 98.6 2.6E-10 9E-15 85.4 -6.4 59 2-66 137-202 (349)
103 1cr0_A DNA primase/helicase; R 98.6 2.1E-09 7.1E-14 78.1 -2.0 105 3-125 42-152 (296)
104 2i3b_A HCR-ntpase, human cance 98.6 4.6E-09 1.6E-13 72.4 -0.4 47 2-52 7-54 (189)
105 2obl_A ESCN; ATPase, hydrolase 98.6 3.6E-08 1.2E-12 73.8 4.5 47 3-51 78-134 (347)
106 3tr0_A Guanylate kinase, GMP k 98.5 3E-09 1E-13 73.0 -3.3 57 2-64 13-72 (205)
107 2qm8_A GTPase/ATPase; G protei 98.5 5.1E-09 1.7E-13 78.0 -2.3 54 2-57 61-121 (337)
108 1nlf_A Regulatory protein REPA 98.5 7.8E-08 2.7E-12 69.3 3.6 100 2-125 36-138 (279)
109 1odf_A YGR205W, hypothetical 3 98.5 3.3E-09 1.1E-13 77.6 -3.8 103 2-125 37-157 (290)
110 2x8a_A Nuclear valosin-contain 98.5 8.7E-11 3E-15 85.2 -12.2 61 2-66 50-114 (274)
111 1tf7_A KAIC; homohexamer, hexa 98.5 2.4E-07 8.2E-12 72.5 6.3 86 2-127 287-379 (525)
112 2bbw_A Adenylate kinase 4, AK4 98.4 2.2E-09 7.5E-14 76.2 -5.4 63 2-67 33-98 (246)
113 3pih_A Uvrabc system protein A 98.4 9.2E-08 3.2E-12 79.4 3.0 93 14-127 385-493 (916)
114 2qag_B Septin-6, protein NEDD5 98.4 9.4E-09 3.2E-13 78.9 -3.4 56 3-68 49-107 (427)
115 1ewq_A DNA mismatch repair pro 98.4 3.4E-08 1.2E-12 80.6 -0.7 52 2-66 582-634 (765)
116 3euj_A Chromosome partition pr 98.4 4.5E-08 1.5E-12 76.2 -0.1 33 2-36 35-67 (483)
117 2oap_1 GSPE-2, type II secreti 98.3 6.8E-07 2.3E-11 70.0 5.7 46 3-51 267-313 (511)
118 2ewv_A Twitching motility prot 98.3 3.6E-08 1.2E-12 74.3 -1.6 46 2-50 142-188 (372)
119 4eun_A Thermoresistant glucoki 98.3 1.5E-08 5E-13 69.8 -3.7 60 2-67 35-96 (200)
120 1pui_A ENGB, probable GTP-bind 98.3 4.4E-09 1.5E-13 72.2 -6.6 27 3-31 33-64 (210)
121 1tf7_A KAIC; homohexamer, hexa 98.3 2.7E-08 9.1E-13 77.9 -3.0 50 2-53 45-98 (525)
122 2bdt_A BH3686; alpha-beta prot 98.3 2.4E-08 8.2E-13 67.8 -3.0 59 2-68 8-66 (189)
123 1iy2_A ATP-dependent metallopr 98.2 1.5E-09 5E-14 78.4 -10.2 61 2-66 79-143 (278)
124 4a74_A DNA repair and recombin 98.2 2.2E-08 7.5E-13 69.5 -4.1 59 3-67 32-97 (231)
125 4e22_A Cytidylate kinase; P-lo 98.2 9.5E-08 3.2E-12 68.2 -1.5 49 2-52 33-96 (252)
126 2eyu_A Twitching motility prot 98.2 1.2E-07 4.2E-12 68.2 -1.1 46 2-50 31-77 (261)
127 1ixz_A ATP-dependent metallopr 98.2 2.1E-09 7.1E-14 76.4 -10.8 61 2-66 55-119 (254)
128 2qag_C Septin-7; cell cycle, c 98.1 1.3E-07 4.5E-12 72.4 -1.9 61 3-68 38-100 (418)
129 2ehv_A Hypothetical protein PH 98.1 2.1E-08 7.1E-13 70.5 -6.1 59 2-62 36-98 (251)
130 3jvv_A Twitching mobility prot 98.1 7.1E-07 2.4E-11 67.0 1.0 65 2-69 129-194 (356)
131 1udx_A The GTP-binding protein 98.1 1.7E-06 6E-11 66.1 3.0 95 3-125 164-275 (416)
132 2r6f_A Excinuclease ABC subuni 97.9 2E-05 7E-10 65.7 6.8 63 56-127 450-533 (972)
133 2o8b_B DNA mismatch repair pro 97.9 2.7E-07 9.3E-12 77.4 -4.3 31 2-52 795-826 (1022)
134 3a00_A Guanylate kinase, GMP k 97.9 2E-06 6.7E-11 58.4 0.5 20 2-23 7-26 (186)
135 3c8u_A Fructokinase; YP_612366 97.9 1.7E-06 5.7E-11 59.7 -0.0 33 2-36 28-63 (208)
136 1sxj_E Activator 1 40 kDa subu 97.9 3E-06 1E-10 62.4 1.0 51 2-54 42-94 (354)
137 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 3.4E-06 1.2E-10 64.1 1.1 60 3-64 27-105 (392)
138 1lvg_A Guanylate kinase, GMP k 97.8 2.8E-06 9.5E-11 58.4 0.4 19 3-23 11-29 (198)
139 1zu4_A FTSY; GTPase, signal re 97.8 5.2E-06 1.8E-10 61.4 0.8 63 3-67 112-187 (320)
140 1vma_A Cell division protein F 97.7 9.3E-06 3.2E-10 59.7 2.0 32 3-36 111-142 (306)
141 1oix_A RAS-related protein RAB 97.7 1.4E-05 4.7E-10 54.2 2.6 32 3-36 36-78 (191)
142 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 1.4E-05 4.7E-10 52.9 2.5 23 105-127 56-90 (148)
143 2ygr_A Uvrabc system protein A 97.7 2.1E-05 7E-10 65.8 3.9 66 53-127 464-550 (993)
144 3lda_A DNA repair protein RAD5 97.7 2.5E-06 8.5E-11 65.0 -1.7 46 3-50 185-241 (400)
145 2j41_A Guanylate kinase; GMP, 97.7 6.7E-06 2.3E-10 56.0 0.6 24 2-27 12-35 (207)
146 1wb9_A DNA mismatch repair pro 97.7 4.1E-06 1.4E-10 68.8 -0.6 53 2-67 613-666 (800)
147 3thx_B DNA mismatch repair pro 97.7 8.7E-06 3E-10 67.7 1.2 18 2-20 679-696 (918)
148 1knq_A Gluconate kinase; ALFA/ 97.7 1E-06 3.4E-11 58.9 -3.7 58 2-65 14-73 (175)
149 3thx_A DNA mismatch repair pro 97.7 7.3E-06 2.5E-10 68.3 0.5 15 2-17 668-682 (934)
150 1lw7_A Transcriptional regulat 97.7 2.6E-06 8.9E-11 63.7 -2.0 58 3-64 177-244 (365)
151 1mky_A Probable GTP-binding pr 97.6 5.7E-05 1.9E-09 57.8 4.7 60 3-64 187-261 (439)
152 3kta_A Chromosome segregation 97.6 2E-05 6.8E-10 52.8 1.5 48 3-52 33-89 (182)
153 1cke_A CK, MSSA, protein (cyti 97.6 2.1E-06 7.2E-11 59.5 -3.7 49 2-52 11-74 (227)
154 3lnc_A Guanylate kinase, GMP k 97.5 2.7E-05 9.3E-10 54.3 1.1 19 2-22 33-52 (231)
155 1rz3_A Hypothetical protein rb 97.4 1.4E-05 4.7E-10 54.8 -1.2 32 2-35 28-59 (201)
156 1kgd_A CASK, peripheral plasma 97.4 3.1E-05 1.1E-09 52.1 0.5 27 2-30 11-38 (180)
157 2f9l_A RAB11B, member RAS onco 97.4 0.00013 4.4E-09 49.4 3.6 31 3-35 12-53 (199)
158 3uie_A Adenylyl-sulfate kinase 97.4 1.5E-05 5E-10 54.6 -1.3 32 2-36 31-64 (200)
159 2vp4_A Deoxynucleoside kinase; 97.3 5.2E-05 1.8E-09 53.0 1.2 29 2-36 26-54 (230)
160 2kjq_A DNAA-related protein; s 97.2 4.4E-05 1.5E-09 50.2 -0.1 32 2-36 42-75 (149)
161 2w0m_A SSO2452; RECA, SSPF, un 97.2 2.8E-05 9.5E-10 53.5 -1.2 34 2-37 29-62 (235)
162 3tqc_A Pantothenate kinase; bi 97.2 6.6E-05 2.3E-09 55.6 0.6 28 2-31 98-127 (321)
163 3ney_A 55 kDa erythrocyte memb 97.2 0.00011 3.6E-09 50.9 1.5 20 2-23 25-44 (197)
164 1n0w_A DNA repair protein RAD5 97.1 0.00017 6E-09 50.0 2.2 47 2-50 30-87 (243)
165 3hr8_A Protein RECA; alpha and 97.1 5.1E-05 1.8E-09 56.9 -1.1 63 3-67 68-131 (356)
166 2qt1_A Nicotinamide riboside k 97.0 0.00044 1.5E-08 47.2 3.5 20 2-23 27-46 (207)
167 3cr8_A Sulfate adenylyltranfer 97.0 9.1E-05 3.1E-09 58.5 -0.3 33 2-36 375-409 (552)
168 2www_A Methylmalonic aciduria 97.0 8.9E-05 3E-09 55.3 -0.5 31 3-35 81-111 (349)
169 2vf7_A UVRA2, excinuclease ABC 97.0 0.0007 2.4E-08 55.9 4.6 37 91-127 361-408 (842)
170 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00058 2E-08 51.2 3.7 32 3-36 186-228 (364)
171 3k1j_A LON protease, ATP-depen 96.9 0.00071 2.4E-08 53.7 4.1 47 2-52 66-113 (604)
172 3tau_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 48.2 1.7 21 2-24 14-34 (208)
173 1kag_A SKI, shikimate kinase I 96.8 0.00036 1.2E-08 46.0 1.4 20 2-23 10-29 (173)
174 3ec2_A DNA replication protein 96.8 0.00013 4.4E-09 48.8 -1.0 24 2-27 44-67 (180)
175 3m6a_A ATP-dependent protease 96.7 0.00037 1.2E-08 54.8 0.6 31 2-34 114-144 (543)
176 1svm_A Large T antigen; AAA+ f 96.6 0.0002 7E-09 54.0 -1.1 44 2-52 175-218 (377)
177 1ls1_A Signal recognition part 96.5 0.00036 1.2E-08 50.8 -0.4 33 3-37 105-137 (295)
178 2qag_A Septin-2, protein NEDD5 96.5 0.0003 1E-08 52.6 -0.9 27 2-30 43-69 (361)
179 1m7g_A Adenylylsulfate kinase; 96.5 0.0003 1E-08 48.3 -0.9 32 2-35 31-64 (211)
180 2px0_A Flagellar biosynthesis 96.4 0.00035 1.2E-08 51.0 -0.9 31 3-35 112-143 (296)
181 3kta_B Chromosome segregation 96.4 0.0017 5.8E-08 43.8 2.5 23 105-127 63-95 (173)
182 2wjg_A FEOB, ferrous iron tran 96.4 0.0018 6.3E-08 42.8 2.6 17 3-20 14-30 (188)
183 2pez_A Bifunctional 3'-phospho 96.4 0.00043 1.5E-08 46.1 -0.5 30 2-34 11-42 (179)
184 2wji_A Ferrous iron transport 96.3 0.0045 1.5E-07 40.4 4.2 17 3-20 10-26 (165)
185 3t34_A Dynamin-related protein 96.3 0.0019 6.5E-08 47.9 2.5 31 3-34 41-72 (360)
186 1jjv_A Dephospho-COA kinase; P 96.3 0.0019 6.5E-08 43.9 2.4 18 2-20 8-25 (206)
187 2p67_A LAO/AO transport system 96.1 0.00078 2.7E-08 49.9 -0.5 31 3-35 63-93 (341)
188 2gj8_A MNME, tRNA modification 96.1 0.0047 1.6E-07 40.7 3.3 17 3-20 11-27 (172)
189 1np6_A Molybdopterin-guanine d 96.0 0.0014 4.9E-08 44.2 0.6 32 2-35 12-46 (174)
190 2yvu_A Probable adenylyl-sulfa 96.0 0.0013 4.3E-08 44.1 0.3 27 2-30 19-45 (186)
191 2zej_A Dardarin, leucine-rich 96.0 0.0034 1.2E-07 41.7 2.3 17 3-20 9-25 (184)
192 3kb2_A SPBC2 prophage-derived 95.9 0.0037 1.3E-07 40.8 2.1 18 2-20 7-24 (173)
193 1w1w_A Structural maintenance 95.8 0.0026 8.8E-08 48.4 1.4 23 2-26 32-54 (430)
194 3lxx_A GTPase IMAP family memb 95.8 0.0054 1.8E-07 42.6 2.9 23 3-27 36-58 (239)
195 2if2_A Dephospho-COA kinase; a 95.8 0.0026 9E-08 43.0 1.2 18 2-20 7-24 (204)
196 3t61_A Gluconokinase; PSI-biol 95.8 0.0043 1.5E-07 42.0 2.1 18 2-20 24-41 (202)
197 1f6b_A SAR1; gtpases, N-termin 95.7 0.0079 2.7E-07 40.5 3.4 32 3-35 32-70 (198)
198 4ag6_A VIRB4 ATPase, type IV s 95.6 0.0031 1.1E-07 47.2 1.0 29 3-33 42-70 (392)
199 2qor_A Guanylate kinase; phosp 95.6 0.0053 1.8E-07 41.7 2.1 18 2-20 18-35 (204)
200 3k53_A Ferrous iron transport 95.6 0.0045 1.5E-07 44.0 1.8 17 3-20 10-26 (271)
201 1qhx_A CPT, protein (chloramph 95.6 0.0053 1.8E-07 40.4 2.0 18 2-20 9-26 (178)
202 3ihw_A Centg3; RAS, centaurin, 95.5 0.013 4.4E-07 39.0 3.8 32 3-35 27-66 (184)
203 3vaa_A Shikimate kinase, SK; s 95.5 0.0059 2E-07 41.3 2.1 18 2-20 31-48 (199)
204 2dy1_A Elongation factor G; tr 95.5 0.0011 3.6E-08 53.5 -2.0 46 3-51 16-66 (665)
205 1m2o_B GTP-binding protein SAR 95.5 0.008 2.7E-07 40.2 2.6 32 3-35 30-68 (190)
206 4eaq_A DTMP kinase, thymidylat 95.5 0.005 1.7E-07 43.0 1.7 27 2-31 32-58 (229)
207 2jaq_A Deoxyguanosine kinase; 95.4 0.0065 2.2E-07 40.7 2.1 18 2-20 6-23 (205)
208 2o5v_A DNA replication and rep 95.4 0.0063 2.2E-07 45.5 2.2 17 2-19 32-48 (359)
209 2ohf_A Protein OLA1, GTP-bindi 95.4 0.01 3.4E-07 45.1 3.2 31 3-34 29-69 (396)
210 3qkt_A DNA double-strand break 95.3 0.0072 2.5E-07 44.5 2.2 23 105-127 247-281 (339)
211 1jal_A YCHF protein; nucleotid 95.3 0.011 3.9E-07 44.3 3.2 30 3-33 9-48 (363)
212 2ius_A DNA translocase FTSK; n 95.3 0.0058 2E-07 47.9 1.7 33 3-36 174-207 (512)
213 4ad8_A DNA repair protein RECN 95.2 0.0068 2.3E-07 47.2 1.9 23 105-127 395-426 (517)
214 1kht_A Adenylate kinase; phosp 95.2 0.0084 2.9E-07 39.7 2.1 18 2-20 9-26 (192)
215 3lw7_A Adenylate kinase relate 95.2 0.0084 2.9E-07 38.8 2.0 15 2-17 7-21 (179)
216 2ffh_A Protein (FFH); SRP54, s 95.2 0.0038 1.3E-07 47.8 0.3 32 3-36 105-136 (425)
217 3iby_A Ferrous iron transport 95.2 0.0075 2.6E-07 42.8 1.8 17 3-20 8-24 (256)
218 2p5t_B PEZT; postsegregational 95.2 0.0061 2.1E-07 43.0 1.3 30 2-35 38-67 (253)
219 1ly1_A Polynucleotide kinase; 95.1 0.009 3.1E-07 39.2 2.0 17 2-19 8-24 (181)
220 3b1v_A Ferrous iron uptake tra 95.1 0.0091 3.1E-07 42.8 2.2 18 2-20 9-26 (272)
221 4ad8_A DNA repair protein RECN 95.1 0.006 2E-07 47.5 1.2 54 3-57 67-161 (517)
222 1ex7_A Guanylate kinase; subst 95.1 0.0096 3.3E-07 40.5 2.0 17 2-19 7-23 (186)
223 2o5v_A DNA replication and rep 95.1 0.011 3.7E-07 44.3 2.5 22 106-127 265-301 (359)
224 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.01 3.5E-07 38.7 2.0 15 3-18 30-44 (149)
225 1nks_A Adenylate kinase; therm 95.1 0.0086 2.9E-07 39.7 1.7 18 2-20 7-24 (194)
226 2dhr_A FTSH; AAA+ protein, hex 95.0 0.007 2.4E-07 47.2 1.4 31 2-36 70-100 (499)
227 1via_A Shikimate kinase; struc 95.0 0.011 3.6E-07 39.1 2.1 18 2-20 10-27 (175)
228 3cm0_A Adenylate kinase; ATP-b 95.0 0.011 3.7E-07 39.2 2.1 16 2-18 10-25 (186)
229 3r20_A Cytidylate kinase; stru 95.0 0.0033 1.1E-07 44.4 -0.5 25 3-29 16-43 (233)
230 2cvh_A DNA repair and recombin 95.0 0.0088 3E-07 40.6 1.6 30 2-35 26-55 (220)
231 2erx_A GTP-binding protein DI- 94.9 0.012 4.3E-07 37.8 2.2 17 3-20 10-26 (172)
232 1ega_A Protein (GTP-binding pr 94.9 0.012 4E-07 42.7 2.2 17 3-20 15-31 (301)
233 3a1s_A Iron(II) transport prot 94.9 0.012 4.1E-07 41.7 2.2 17 3-20 12-28 (258)
234 3nwj_A ATSK2; P loop, shikimat 94.8 0.0099 3.4E-07 42.2 1.6 18 2-20 54-71 (250)
235 1vht_A Dephospho-COA kinase; s 94.8 0.012 4.3E-07 40.1 2.1 18 2-20 10-27 (218)
236 3auy_A DNA double-strand break 94.8 0.014 4.6E-07 43.6 2.4 16 2-18 31-46 (371)
237 3i8s_A Ferrous iron transport 94.8 0.011 3.8E-07 42.2 1.8 17 3-20 10-26 (274)
238 2rhm_A Putative kinase; P-loop 94.8 0.011 3.8E-07 39.3 1.7 18 2-20 11-28 (193)
239 3iij_A Coilin-interacting nucl 94.8 0.013 4.5E-07 38.7 2.1 16 2-18 17-32 (180)
240 3q72_A GTP-binding protein RAD 94.8 0.011 3.9E-07 37.9 1.7 17 3-20 9-25 (166)
241 2z0h_A DTMP kinase, thymidylat 94.8 0.013 4.6E-07 39.0 2.1 18 2-20 6-23 (197)
242 1z2a_A RAS-related protein RAB 94.7 0.011 3.9E-07 37.9 1.6 17 3-20 12-28 (168)
243 1j8m_F SRP54, signal recogniti 94.7 0.0039 1.3E-07 45.4 -0.8 32 3-36 105-136 (297)
244 2ged_A SR-beta, signal recogni 94.7 0.011 3.8E-07 39.1 1.6 17 3-20 55-71 (193)
245 2nzj_A GTP-binding protein REM 94.7 0.015 5.1E-07 37.6 2.2 17 3-20 11-27 (175)
246 2ce2_X GTPase HRAS; signaling 94.7 0.0098 3.4E-07 37.9 1.2 17 3-20 10-26 (166)
247 3trf_A Shikimate kinase, SK; a 94.7 0.014 4.9E-07 38.6 2.1 18 2-20 11-28 (185)
248 3tw8_B RAS-related protein RAB 94.6 0.015 5.3E-07 37.7 2.1 17 3-20 16-32 (181)
249 1u8z_A RAS-related protein RAL 94.6 0.012 4.2E-07 37.5 1.6 17 3-20 11-27 (168)
250 2lkc_A Translation initiation 94.6 0.016 5.6E-07 37.6 2.2 17 3-20 15-31 (178)
251 2plr_A DTMP kinase, probable t 94.6 0.015 5.1E-07 39.1 2.0 18 2-20 10-27 (213)
252 2dyk_A GTP-binding protein; GT 94.6 0.013 4.3E-07 37.4 1.6 17 3-20 8-24 (161)
253 1svi_A GTP-binding protein YSX 94.6 0.013 4.6E-07 38.7 1.7 17 3-20 30-46 (195)
254 1lv7_A FTSH; alpha/beta domain 94.6 0.012 4.3E-07 41.1 1.6 30 2-35 51-80 (257)
255 3pqc_A Probable GTP-binding pr 94.6 0.014 4.6E-07 38.5 1.7 17 3-20 30-46 (195)
256 2zr9_A Protein RECA, recombina 94.6 0.0034 1.2E-07 46.8 -1.4 62 3-66 68-130 (349)
257 3q85_A GTP-binding protein REM 94.5 0.018 6E-07 37.1 2.2 17 3-20 9-25 (169)
258 1e6c_A Shikimate kinase; phosp 94.5 0.017 5.9E-07 37.7 2.1 18 2-20 8-25 (173)
259 1sxj_C Activator 1 40 kDa subu 94.5 0.0029 1E-07 46.4 -2.0 26 2-29 52-77 (340)
260 2pbr_A DTMP kinase, thymidylat 94.5 0.018 6.1E-07 38.2 2.1 18 2-20 6-23 (195)
261 2v54_A DTMP kinase, thymidylat 94.5 0.017 5.9E-07 38.7 2.0 18 2-20 10-27 (204)
262 1kao_A RAP2A; GTP-binding prot 94.4 0.014 4.9E-07 37.2 1.6 17 3-20 10-26 (167)
263 1y63_A LMAJ004144AAA protein; 94.4 0.018 6.1E-07 38.5 2.1 18 2-20 16-33 (184)
264 1c1y_A RAS-related protein RAP 94.4 0.015 5E-07 37.3 1.6 17 3-20 10-26 (167)
265 3t5d_A Septin-7; GTP-binding p 94.4 0.015 5E-07 41.4 1.7 17 3-20 15-31 (274)
266 2pt5_A Shikimate kinase, SK; a 94.4 0.019 6.5E-07 37.3 2.1 18 2-20 6-23 (168)
267 3lxw_A GTPase IMAP family memb 94.4 0.019 6.5E-07 40.3 2.2 17 3-20 28-44 (247)
268 3clv_A RAB5 protein, putative; 94.4 0.015 5E-07 38.4 1.6 17 3-20 14-30 (208)
269 2dr3_A UPF0273 protein PH0284; 94.4 0.0081 2.8E-07 41.4 0.3 31 2-34 29-60 (247)
270 1gvn_B Zeta; postsegregational 94.4 0.013 4.5E-07 42.3 1.4 28 2-33 39-66 (287)
271 1uf9_A TT1252 protein; P-loop, 94.3 0.016 5.5E-07 38.7 1.7 17 3-20 15-31 (203)
272 1gtv_A TMK, thymidylate kinase 94.3 0.0061 2.1E-07 41.3 -0.4 20 2-23 6-25 (214)
273 2cxx_A Probable GTP-binding pr 94.3 0.017 5.7E-07 38.0 1.7 17 3-20 8-24 (190)
274 1z0j_A RAB-22, RAS-related pro 94.3 0.016 5.3E-07 37.3 1.6 17 3-20 13-29 (170)
275 1ek0_A Protein (GTP-binding pr 94.3 0.016 5.5E-07 37.1 1.6 17 3-20 10-26 (170)
276 3ake_A Cytidylate kinase; CMP 94.3 0.019 6.6E-07 38.5 2.1 18 2-20 8-25 (208)
277 1z08_A RAS-related protein RAB 94.2 0.017 5.9E-07 37.1 1.6 17 3-20 13-29 (170)
278 1jwy_B Dynamin A GTPase domain 94.2 0.017 6E-07 41.5 1.8 17 3-20 31-47 (315)
279 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.017 5.8E-07 37.5 1.6 17 3-20 14-30 (177)
280 2wwf_A Thymidilate kinase, put 94.2 0.018 6.1E-07 38.8 1.7 18 2-20 16-33 (212)
281 3qks_A DNA double-strand break 94.2 0.021 7.3E-07 39.0 2.0 16 2-18 29-44 (203)
282 3fb4_A Adenylate kinase; psych 94.2 0.022 7.4E-07 38.7 2.1 17 2-19 6-22 (216)
283 1ky3_A GTP-binding protein YPT 94.1 0.018 6.2E-07 37.4 1.6 17 3-20 15-31 (182)
284 1xjc_A MOBB protein homolog; s 94.1 0.023 7.8E-07 38.1 2.0 17 3-20 11-27 (169)
285 3con_A GTPase NRAS; structural 94.1 0.019 6.4E-07 37.9 1.6 17 3-20 28-44 (190)
286 1tev_A UMP-CMP kinase; ploop, 94.1 0.023 7.9E-07 37.6 2.0 17 2-19 9-25 (196)
287 2fn4_A P23, RAS-related protei 94.1 0.016 5.4E-07 37.6 1.2 17 3-20 16-32 (181)
288 4dsu_A GTPase KRAS, isoform 2B 94.1 0.019 6.4E-07 37.6 1.6 17 3-20 11-27 (189)
289 1g16_A RAS-related protein SEC 94.1 0.016 5.5E-07 37.2 1.2 17 3-20 10-26 (170)
290 2w58_A DNAI, primosome compone 94.1 0.015 5.1E-07 39.1 1.1 26 2-29 60-85 (202)
291 1r2q_A RAS-related protein RAB 94.0 0.02 6.7E-07 36.7 1.6 17 3-20 13-29 (170)
292 2hxs_A RAB-26, RAS-related pro 94.0 0.024 8.2E-07 36.8 2.0 17 3-20 13-29 (178)
293 1fzq_A ADP-ribosylation factor 94.0 0.021 7.2E-07 37.7 1.7 31 3-34 23-60 (181)
294 1z0f_A RAB14, member RAS oncog 93.9 0.021 7.2E-07 37.0 1.6 17 3-20 22-38 (179)
295 4fcw_A Chaperone protein CLPB; 93.9 0.015 5.1E-07 41.6 0.9 27 2-30 53-79 (311)
296 1zuh_A Shikimate kinase; alpha 93.9 0.027 9.1E-07 36.8 2.1 17 2-19 13-29 (168)
297 2c95_A Adenylate kinase 1; tra 93.9 0.022 7.5E-07 37.9 1.7 18 2-20 15-32 (196)
298 3bc1_A RAS-related protein RAB 93.9 0.022 7.4E-07 37.4 1.6 17 3-20 18-34 (195)
299 1upt_A ARL1, ADP-ribosylation 93.9 0.022 7.5E-07 36.6 1.6 17 3-20 14-30 (171)
300 3dl0_A Adenylate kinase; phosp 93.9 0.026 9E-07 38.3 2.1 18 2-20 6-23 (216)
301 1nn5_A Similar to deoxythymidy 93.9 0.023 7.7E-07 38.4 1.7 16 3-19 16-31 (215)
302 1ksh_A ARF-like protein 2; sma 93.9 0.029 9.9E-07 36.8 2.2 17 3-20 25-41 (186)
303 2aka_B Dynamin-1; fusion prote 93.9 0.023 7.8E-07 40.5 1.8 17 3-20 33-49 (299)
304 2vli_A Antibiotic resistance p 93.8 0.018 6.3E-07 37.9 1.2 18 2-20 11-28 (183)
305 2ze6_A Isopentenyl transferase 93.8 0.026 9E-07 39.8 2.0 18 2-20 7-24 (253)
306 2iyv_A Shikimate kinase, SK; t 93.8 0.028 9.6E-07 37.2 2.1 18 2-20 8-25 (184)
307 3kl4_A SRP54, signal recogniti 93.8 0.01 3.5E-07 45.5 -0.1 33 2-36 103-135 (433)
308 2efe_B Small GTP-binding prote 93.8 0.023 8E-07 36.9 1.6 17 3-20 19-35 (181)
309 3t1o_A Gliding protein MGLA; G 93.8 0.023 8E-07 37.3 1.6 17 3-20 21-37 (198)
310 3iev_A GTP-binding protein ERA 93.8 0.029 9.8E-07 40.8 2.2 17 3-20 17-33 (308)
311 2bwj_A Adenylate kinase 5; pho 93.8 0.024 8.3E-07 37.7 1.7 18 2-20 18-35 (199)
312 2g6b_A RAS-related protein RAB 93.7 0.024 8.2E-07 36.8 1.6 17 3-20 17-33 (180)
313 2oil_A CATX-8, RAS-related pro 93.7 0.024 8.3E-07 37.5 1.6 17 3-20 32-48 (193)
314 2qu8_A Putative nucleolar GTP- 93.7 0.031 1E-06 38.3 2.2 17 3-20 36-52 (228)
315 2a9k_A RAS-related protein RAL 93.7 0.024 8.3E-07 36.9 1.6 17 3-20 25-41 (187)
316 1r8s_A ADP-ribosylation factor 93.7 0.026 8.8E-07 36.1 1.6 17 3-20 7-23 (164)
317 3cbq_A GTP-binding protein REM 93.6 0.027 9.3E-07 37.7 1.7 17 3-20 30-46 (195)
318 2y8e_A RAB-protein 6, GH09086P 93.6 0.022 7.5E-07 36.9 1.2 17 3-20 21-37 (179)
319 3qkt_A DNA double-strand break 93.6 0.03 1E-06 41.2 2.0 15 3-18 30-44 (339)
320 1nrj_B SR-beta, signal recogni 93.6 0.026 8.9E-07 38.1 1.6 17 3-20 19-35 (218)
321 1qf9_A UMP/CMP kinase, protein 93.6 0.028 9.4E-07 37.1 1.7 18 2-20 12-29 (194)
322 2xtp_A GTPase IMAP family memb 93.6 0.029 9.9E-07 39.3 1.8 17 3-20 29-45 (260)
323 2il1_A RAB12; G-protein, GDP, 93.5 0.033 1.1E-06 37.0 2.1 17 3-20 33-49 (192)
324 4bas_A ADP-ribosylation factor 93.5 0.034 1.2E-06 36.7 2.1 17 3-20 24-40 (199)
325 2bov_A RAla, RAS-related prote 93.5 0.027 9.4E-07 37.4 1.6 17 3-20 21-37 (206)
326 1moz_A ARL1, ADP-ribosylation 93.5 0.021 7.1E-07 37.3 1.0 16 3-19 25-40 (183)
327 2cdn_A Adenylate kinase; phosp 93.5 0.034 1.2E-06 37.4 2.0 18 2-20 26-43 (201)
328 1wf3_A GTP-binding protein; GT 93.5 0.034 1.2E-06 40.3 2.2 17 3-20 14-30 (301)
329 1ukz_A Uridylate kinase; trans 93.5 0.034 1.2E-06 37.3 2.1 17 2-19 21-37 (203)
330 2h57_A ADP-ribosylation factor 93.5 0.025 8.7E-07 37.3 1.4 17 3-20 28-44 (190)
331 2e87_A Hypothetical protein PH 93.5 0.033 1.1E-06 41.2 2.1 17 3-20 174-190 (357)
332 1h65_A Chloroplast outer envel 93.4 0.03 1E-06 39.6 1.8 17 3-20 46-62 (270)
333 1zd8_A GTP:AMP phosphotransfer 93.4 0.029 1E-06 38.6 1.7 18 2-20 13-30 (227)
334 1zbd_A Rabphilin-3A; G protein 93.4 0.038 1.3E-06 36.8 2.2 17 3-20 15-31 (203)
335 1vg8_A RAS-related protein RAB 93.4 0.029 9.8E-07 37.4 1.6 17 3-20 15-31 (207)
336 4dhe_A Probable GTP-binding pr 93.4 0.013 4.4E-07 39.8 -0.2 17 3-20 36-52 (223)
337 3tkl_A RAS-related protein RAB 93.4 0.03 1E-06 36.9 1.6 17 3-20 23-39 (196)
338 2gf0_A GTP-binding protein DI- 93.3 0.025 8.6E-07 37.4 1.2 17 3-20 15-31 (199)
339 2gf9_A RAS-related protein RAB 93.3 0.031 1E-06 36.9 1.6 17 3-20 29-45 (189)
340 1jbk_A CLPB protein; beta barr 93.3 0.039 1.3E-06 35.9 2.1 18 2-20 49-66 (195)
341 1q3t_A Cytidylate kinase; nucl 93.3 0.038 1.3E-06 38.3 2.1 17 2-19 22-38 (236)
342 1zak_A Adenylate kinase; ATP:A 93.3 0.032 1.1E-06 38.1 1.7 18 2-20 11-28 (222)
343 1zj6_A ADP-ribosylation factor 93.3 0.035 1.2E-06 36.6 1.8 17 3-20 23-39 (187)
344 3cnl_A YLQF, putative uncharac 93.3 0.04 1.4E-06 39.2 2.2 23 3-27 106-128 (262)
345 2bme_A RAB4A, RAS-related prot 93.2 0.027 9.3E-07 36.8 1.2 17 3-20 17-33 (186)
346 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.033 1.1E-06 36.3 1.6 17 3-20 12-28 (186)
347 1z06_A RAS-related protein RAB 93.2 0.032 1.1E-06 36.8 1.6 17 3-20 27-43 (189)
348 2f7s_A C25KG, RAS-related prot 93.2 0.042 1.4E-06 37.1 2.2 17 3-20 32-48 (217)
349 2h17_A ADP-ribosylation factor 93.2 0.031 1.1E-06 36.7 1.4 17 3-20 28-44 (181)
350 3b9p_A CG5977-PA, isoform A; A 93.1 0.034 1.2E-06 39.6 1.7 18 2-20 60-77 (297)
351 1w1w_A Structural maintenance 93.1 0.046 1.6E-06 41.4 2.5 23 105-127 332-364 (430)
352 2xb4_A Adenylate kinase; ATP-b 93.1 0.042 1.4E-06 37.8 2.1 18 2-20 6-23 (223)
353 3bos_A Putative DNA replicatio 93.1 0.042 1.4E-06 37.3 2.1 18 2-20 58-75 (242)
354 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.041 1.4E-06 38.8 2.0 17 2-19 10-26 (260)
355 2o52_A RAS-related protein RAB 93.1 0.039 1.3E-06 37.0 1.8 17 3-20 32-48 (200)
356 3cf0_A Transitional endoplasmi 93.1 0.034 1.2E-06 40.1 1.6 29 2-34 55-83 (301)
357 1aky_A Adenylate kinase; ATP:A 93.1 0.043 1.5E-06 37.5 2.0 18 2-20 10-27 (220)
358 1zd9_A ADP-ribosylation factor 93.1 0.036 1.2E-06 36.7 1.6 17 3-20 29-45 (188)
359 3oes_A GTPase rhebl1; small GT 93.0 0.03 1E-06 37.4 1.2 17 3-20 31-47 (201)
360 3kkq_A RAS-related protein M-R 93.0 0.045 1.6E-06 35.7 2.1 17 3-20 25-41 (183)
361 3bwd_D RAC-like GTP-binding pr 93.0 0.037 1.3E-06 36.0 1.6 17 3-20 15-31 (182)
362 2a5j_A RAS-related protein RAB 93.0 0.037 1.3E-06 36.6 1.6 17 3-20 28-44 (191)
363 1e4v_A Adenylate kinase; trans 93.0 0.038 1.3E-06 37.6 1.7 17 2-19 6-22 (214)
364 2q3h_A RAS homolog gene family 93.0 0.049 1.7E-06 36.2 2.2 17 3-20 27-43 (201)
365 3reg_A RHO-like small GTPase; 92.9 0.038 1.3E-06 36.6 1.6 17 3-20 30-46 (194)
366 1m7b_A RND3/RHOE small GTP-bin 92.9 0.032 1.1E-06 36.7 1.2 17 3-20 14-30 (184)
367 2fg5_A RAB-22B, RAS-related pr 92.9 0.032 1.1E-06 37.0 1.2 17 3-20 30-46 (192)
368 3def_A T7I23.11 protein; chlor 92.9 0.041 1.4E-06 38.8 1.8 17 3-20 43-59 (262)
369 1osn_A Thymidine kinase, VZV-T 92.9 0.06 2E-06 40.1 2.7 28 2-32 18-46 (341)
370 2atv_A RERG, RAS-like estrogen 92.9 0.039 1.3E-06 36.7 1.6 17 3-20 35-51 (196)
371 2dby_A GTP-binding protein; GD 92.8 0.037 1.3E-06 41.5 1.6 17 3-20 8-24 (368)
372 3dz8_A RAS-related protein RAB 92.8 0.035 1.2E-06 36.8 1.2 17 3-20 30-46 (191)
373 3llu_A RAS-related GTP-binding 92.8 0.046 1.6E-06 36.4 1.8 17 3-20 27-43 (196)
374 2p5s_A RAS and EF-hand domain 92.7 0.042 1.4E-06 36.6 1.6 17 3-20 35-51 (199)
375 1x3s_A RAS-related protein RAB 92.7 0.042 1.4E-06 36.1 1.6 17 3-20 22-38 (195)
376 2wsm_A Hydrogenase expression/ 92.7 0.036 1.2E-06 37.6 1.2 17 3-20 37-53 (221)
377 1ltq_A Polynucleotide kinase; 92.7 0.05 1.7E-06 38.9 2.0 17 2-19 8-24 (301)
378 3tlx_A Adenylate kinase 2; str 92.7 0.051 1.7E-06 38.0 2.0 17 2-19 35-51 (243)
379 2r62_A Cell division protease 92.7 0.056 1.9E-06 37.8 2.3 19 1-20 49-67 (268)
380 2ocp_A DGK, deoxyguanosine kin 92.7 0.043 1.5E-06 38.1 1.7 18 2-20 8-25 (241)
381 1uj2_A Uridine-cytidine kinase 92.7 0.051 1.8E-06 38.0 2.1 17 2-19 28-44 (252)
382 2grj_A Dephospho-COA kinase; T 92.7 0.054 1.8E-06 36.8 2.1 18 2-20 18-35 (192)
383 2fv8_A H6, RHO-related GTP-bin 92.6 0.036 1.2E-06 37.3 1.2 17 3-20 32-48 (207)
384 1a7j_A Phosphoribulokinase; tr 92.6 0.027 9.2E-07 40.7 0.5 18 2-20 11-28 (290)
385 2bcg_Y Protein YP2, GTP-bindin 92.6 0.038 1.3E-06 37.0 1.2 17 3-20 15-31 (206)
386 2j1l_A RHO-related GTP-binding 92.6 0.049 1.7E-06 36.9 1.8 17 3-20 41-57 (214)
387 3h4m_A Proteasome-activating n 92.6 0.055 1.9E-06 38.2 2.1 18 2-20 57-74 (285)
388 2iwr_A Centaurin gamma 1; ANK 92.5 0.035 1.2E-06 36.1 0.9 17 3-20 14-30 (178)
389 3cph_A RAS-related protein SEC 92.5 0.047 1.6E-06 36.5 1.6 17 3-20 27-43 (213)
390 2fh5_B SR-beta, signal recogni 92.5 0.047 1.6E-06 36.7 1.6 17 3-20 14-30 (214)
391 2cjw_A GTP-binding protein GEM 92.5 0.048 1.6E-06 36.4 1.6 16 3-19 13-28 (192)
392 1l8q_A Chromosomal replication 92.4 0.057 2E-06 39.0 2.1 18 2-20 43-60 (324)
393 3t5g_A GTP-binding protein RHE 92.3 0.054 1.8E-06 35.3 1.7 16 3-19 13-28 (181)
394 2p65_A Hypothetical protein PF 92.3 0.048 1.6E-06 35.5 1.4 18 2-20 49-66 (187)
395 3c5c_A RAS-like protein 12; GD 92.2 0.053 1.8E-06 35.9 1.6 17 3-20 28-44 (187)
396 2ew1_A RAS-related protein RAB 92.2 0.045 1.5E-06 36.9 1.2 17 3-20 33-49 (201)
397 2f6r_A COA synthase, bifunctio 92.2 0.055 1.9E-06 38.8 1.7 16 2-18 81-96 (281)
398 2b6h_A ADP-ribosylation factor 92.1 0.059 2E-06 35.8 1.7 17 3-20 36-52 (192)
399 1gwn_A RHO-related GTP-binding 92.1 0.048 1.6E-06 36.9 1.2 17 3-20 35-51 (205)
400 2fu5_C RAS-related protein RAB 92.0 0.037 1.3E-06 36.1 0.6 17 3-20 15-31 (183)
401 1ypw_A Transitional endoplasmi 92.0 0.058 2E-06 44.3 1.9 30 2-35 244-273 (806)
402 1njg_A DNA polymerase III subu 92.0 0.073 2.5E-06 35.8 2.1 18 2-20 51-68 (250)
403 2qz4_A Paraplegin; AAA+, SPG7, 92.0 0.07 2.4E-06 37.0 2.1 18 2-20 45-62 (262)
404 3be4_A Adenylate kinase; malar 92.0 0.06 2E-06 36.8 1.7 17 3-20 12-28 (217)
405 1ak2_A Adenylate kinase isoenz 92.0 0.071 2.4E-06 36.8 2.0 18 2-20 22-39 (233)
406 2gco_A H9, RHO-related GTP-bin 92.0 0.05 1.7E-06 36.4 1.2 17 3-20 32-48 (201)
407 4djt_A GTP-binding nuclear pro 91.9 0.03 1E-06 37.8 0.0 17 3-20 18-34 (218)
408 1p5z_B DCK, deoxycytidine kina 91.9 0.042 1.4E-06 38.7 0.8 18 2-20 30-47 (263)
409 2x77_A ADP-ribosylation factor 91.8 0.048 1.6E-06 35.9 1.0 17 3-20 29-45 (189)
410 2j69_A Bacterial dynamin-like 91.8 0.1 3.6E-06 42.1 3.1 18 3-21 76-93 (695)
411 2x2e_A Dynamin-1; nitration, h 91.6 0.056 1.9E-06 39.9 1.2 17 3-20 38-54 (353)
412 2atx_A Small GTP binding prote 91.6 0.059 2E-06 35.6 1.2 17 3-20 25-41 (194)
413 2z4s_A Chromosomal replication 91.6 0.065 2.2E-06 40.9 1.6 18 2-20 136-153 (440)
414 4edh_A DTMP kinase, thymidylat 91.4 0.092 3.1E-06 36.2 2.1 18 2-20 12-29 (213)
415 1puj_A YLQF, conserved hypothe 91.4 0.1 3.4E-06 37.6 2.3 17 3-20 127-143 (282)
416 2yc2_C IFT27, small RAB-relate 91.3 0.037 1.3E-06 36.8 0.0 17 3-20 27-43 (208)
417 1fnn_A CDC6P, cell division co 91.3 0.072 2.5E-06 39.0 1.6 29 2-32 50-80 (389)
418 2g3y_A GTP-binding protein GEM 91.3 0.098 3.3E-06 35.8 2.2 17 3-20 44-60 (211)
419 2hf9_A Probable hydrogenase ni 91.3 0.081 2.8E-06 35.9 1.7 17 3-20 45-61 (226)
420 3auy_A DNA double-strand break 91.2 0.077 2.7E-06 39.4 1.7 23 105-127 279-314 (371)
421 2chg_A Replication factor C sm 91.2 0.098 3.4E-06 34.7 2.1 18 2-20 44-61 (226)
422 3cpj_B GTP-binding protein YPT 91.2 0.08 2.8E-06 36.0 1.6 17 3-20 20-36 (223)
423 4dcu_A GTP-binding protein ENG 91.1 0.077 2.6E-06 40.5 1.6 17 3-20 30-46 (456)
424 2qpt_A EH domain-containing pr 91.1 0.082 2.8E-06 41.6 1.8 17 3-20 72-88 (550)
425 2ce7_A Cell division protein F 91.1 0.077 2.6E-06 41.1 1.6 18 2-20 55-72 (476)
426 3q3j_B RHO-related GTP-binding 91.1 0.084 2.9E-06 35.8 1.6 17 3-20 34-50 (214)
427 2h92_A Cytidylate kinase; ross 91.0 0.1 3.5E-06 35.3 2.0 18 2-20 9-26 (219)
428 2ga8_A Hypothetical 39.9 kDa p 91.0 0.082 2.8E-06 39.6 1.6 18 2-20 30-47 (359)
429 2hup_A RAS-related protein RAB 91.0 0.073 2.5E-06 35.7 1.2 17 3-20 36-52 (201)
430 2r6a_A DNAB helicase, replicat 90.8 0.021 7E-07 43.8 -1.9 34 3-38 210-244 (454)
431 2qby_A CDC6 homolog 1, cell di 90.8 0.074 2.5E-06 38.7 1.2 18 2-20 51-68 (386)
432 3ld9_A DTMP kinase, thymidylat 90.7 0.12 3.9E-06 36.1 2.1 18 2-20 27-44 (223)
433 1d2n_A N-ethylmaleimide-sensit 90.7 0.12 4E-06 36.4 2.1 18 2-20 70-87 (272)
434 2j0v_A RAC-like GTP-binding pr 90.6 0.082 2.8E-06 35.4 1.2 17 3-20 16-32 (212)
435 1sxj_D Activator 1 41 kDa subu 90.6 0.11 3.9E-06 37.5 2.1 18 2-20 64-81 (353)
436 3r7w_A Gtpase1, GTP-binding pr 90.6 0.12 4.2E-06 37.3 2.2 17 3-20 10-26 (307)
437 3v9p_A DTMP kinase, thymidylat 90.6 0.09 3.1E-06 36.8 1.4 18 2-20 31-48 (227)
438 4hlc_A DTMP kinase, thymidylat 90.5 0.13 4.4E-06 35.2 2.1 17 3-20 9-25 (205)
439 3ec1_A YQEH GTPase; atnos1, at 90.4 0.098 3.3E-06 39.0 1.6 17 3-20 169-185 (369)
440 4gzl_A RAS-related C3 botulinu 90.4 0.11 3.8E-06 34.8 1.7 16 3-19 37-52 (204)
441 3n70_A Transport activator; si 90.4 0.14 4.7E-06 32.7 2.1 18 2-20 30-47 (145)
442 2qgz_A Helicase loader, putati 90.3 0.13 4.3E-06 37.4 2.1 18 2-20 158-175 (308)
443 3p32_A Probable GTPase RV1496/ 90.3 0.12 4.2E-06 38.1 2.0 17 3-20 86-102 (355)
444 1ofh_A ATP-dependent HSL prote 90.3 0.13 4.4E-06 36.4 2.0 18 2-20 56-73 (310)
445 1wxq_A GTP-binding protein; st 90.3 0.11 3.8E-06 39.2 1.8 17 3-20 7-23 (397)
446 3sjy_A Translation initiation 90.2 0.14 4.6E-06 38.5 2.2 17 3-20 15-31 (403)
447 3zvl_A Bifunctional polynucleo 90.2 0.099 3.4E-06 39.6 1.4 18 2-20 264-281 (416)
448 3t15_A Ribulose bisphosphate c 90.2 0.12 3.9E-06 37.2 1.7 18 2-20 42-59 (293)
449 1xwi_A SKD1 protein; VPS4B, AA 90.1 0.14 4.7E-06 37.3 2.1 18 2-20 51-68 (322)
450 3lv8_A DTMP kinase, thymidylat 90.1 0.12 4.1E-06 36.3 1.7 18 2-20 33-50 (236)
451 3th5_A RAS-related C3 botulinu 89.5 0.058 2E-06 36.1 0.0 18 2-20 36-53 (204)
452 3eie_A Vacuolar protein sortin 89.9 0.15 5E-06 37.0 2.1 18 2-20 57-74 (322)
453 1e2k_A Thymidine kinase; trans 89.9 0.14 4.9E-06 37.8 2.1 20 2-23 10-29 (331)
454 3tmk_A Thymidylate kinase; pho 89.9 0.13 4.3E-06 35.7 1.7 21 2-24 11-31 (216)
455 4tmk_A Protein (thymidylate ki 89.9 0.13 4.4E-06 35.5 1.7 17 3-20 10-26 (213)
456 1p6x_A Thymidine kinase; P-loo 89.9 0.14 4.9E-06 37.9 2.1 27 2-31 13-39 (334)
457 3llm_A ATP-dependent RNA helic 89.8 0.15 5.2E-06 35.1 2.0 16 2-18 82-97 (235)
458 1ko7_A HPR kinase/phosphatase; 89.7 0.086 3E-06 38.8 0.8 17 2-19 150-166 (314)
459 3tqf_A HPR(Ser) kinase; transf 89.7 0.1 3.6E-06 35.4 1.1 16 2-18 22-37 (181)
460 3syl_A Protein CBBX; photosynt 89.6 0.13 4.5E-06 36.6 1.7 18 2-20 73-90 (309)
461 4b4t_M 26S protease regulatory 89.5 0.13 4.4E-06 39.5 1.6 18 2-20 221-238 (434)
462 2v1u_A Cell division control p 89.5 0.15 5.2E-06 37.1 2.0 18 2-20 50-67 (387)
463 4b4t_K 26S protease regulatory 89.5 0.13 4.5E-06 39.4 1.6 18 2-20 212-229 (428)
464 3hjn_A DTMP kinase, thymidylat 89.3 0.18 6.1E-06 34.2 2.1 17 3-20 7-23 (197)
465 3l0i_B RAS-related protein RAB 89.3 0.034 1.2E-06 37.1 -1.6 17 3-20 40-56 (199)
466 4b4t_L 26S protease subunit RP 89.3 0.14 4.7E-06 39.3 1.6 18 2-20 221-238 (437)
467 3dpu_A RAB family protein; roc 89.2 0.18 6.2E-06 39.2 2.2 17 3-20 48-64 (535)
468 3geh_A MNME, tRNA modification 89.2 0.12 4.1E-06 39.9 1.2 17 3-20 231-247 (462)
469 1zcb_A G alpha I/13; GTP-bindi 89.1 0.17 5.9E-06 37.7 2.0 16 3-19 40-55 (362)
470 3h2y_A GTPase family protein; 89.1 0.12 4.1E-06 38.6 1.1 17 3-20 167-183 (368)
471 4b4t_J 26S protease regulatory 89.1 0.15 5E-06 38.9 1.6 18 2-20 188-205 (405)
472 1of1_A Thymidine kinase; trans 89.0 0.18 6.2E-06 38.0 2.1 20 2-23 55-74 (376)
473 1f5n_A Interferon-induced guan 88.9 0.15 5.2E-06 40.6 1.7 17 3-20 45-61 (592)
474 3d3q_A TRNA delta(2)-isopenten 88.8 0.19 6.6E-06 37.3 2.1 18 2-20 13-30 (340)
475 2bjv_A PSP operon transcriptio 88.8 0.32 1.1E-05 33.9 3.1 18 2-20 35-52 (265)
476 3d8b_A Fidgetin-like protein 1 88.7 0.2 6.7E-06 37.0 2.1 18 2-20 123-140 (357)
477 3hws_A ATP-dependent CLP prote 88.7 0.19 6.6E-06 36.9 2.0 18 2-20 57-74 (363)
478 3gee_A MNME, tRNA modification 88.7 0.15 5E-06 39.5 1.4 17 3-20 240-256 (476)
479 3pfi_A Holliday junction ATP-d 88.6 0.2 7E-06 36.2 2.1 18 2-20 61-78 (338)
480 3crm_A TRNA delta(2)-isopenten 88.5 0.21 7.2E-06 36.8 2.1 18 2-20 11-28 (323)
481 2hjg_A GTP-binding protein ENG 88.5 0.17 5.8E-06 38.4 1.6 17 3-20 10-26 (436)
482 3pvs_A Replication-associated 88.4 0.2 7E-06 38.3 2.1 21 2-24 56-76 (447)
483 3sr0_A Adenylate kinase; phosp 88.3 0.23 7.7E-06 34.1 2.1 17 3-20 7-23 (206)
484 2qp9_X Vacuolar protein sortin 88.2 0.23 7.7E-06 36.7 2.1 18 2-20 90-107 (355)
485 1lnz_A SPO0B-associated GTP-bi 88.1 0.15 5.3E-06 37.7 1.2 17 3-20 165-181 (342)
486 1um8_A ATP-dependent CLP prote 88.1 0.22 7.6E-06 36.7 2.0 18 2-20 78-95 (376)
487 2hjg_A GTP-binding protein ENG 88.0 0.24 8.1E-06 37.6 2.2 17 3-20 182-198 (436)
488 3gj0_A GTP-binding nuclear pro 88.0 0.1 3.5E-06 35.3 0.1 16 3-19 22-38 (221)
489 3uk6_A RUVB-like 2; hexameric 87.8 0.21 7E-06 36.5 1.7 18 2-20 76-93 (368)
490 1v5w_A DMC1, meiotic recombina 87.7 0.31 1.1E-05 35.8 2.6 33 2-35 128-166 (343)
491 3io5_A Recombination and repai 87.7 0.046 1.6E-06 40.6 -1.9 32 2-35 34-68 (333)
492 1ypw_A Transitional endoplasmi 87.6 0.21 7.3E-06 41.0 1.8 31 1-35 516-546 (806)
493 3umf_A Adenylate kinase; rossm 87.5 0.27 9.3E-06 34.0 2.1 17 3-20 36-52 (217)
494 4a9a_A Ribosome-interacting GT 87.5 0.16 5.5E-06 38.2 0.9 17 3-20 79-95 (376)
495 1hqc_A RUVB; extended AAA-ATPa 87.4 0.24 8.1E-06 35.4 1.8 17 2-19 44-60 (324)
496 2z43_A DNA repair and recombin 87.1 0.3 1E-05 35.5 2.2 32 3-35 114-151 (324)
497 4b4t_H 26S protease regulatory 87.0 0.21 7.2E-06 38.7 1.3 18 2-20 249-266 (467)
498 2qby_B CDC6 homolog 3, cell di 86.9 0.25 8.5E-06 36.1 1.7 18 2-20 51-68 (384)
499 1kk1_A EIF2gamma; initiation o 86.8 0.31 1.1E-05 36.6 2.2 17 3-20 17-33 (410)
500 3co5_A Putative two-component 86.8 0.15 5.1E-06 32.5 0.3 18 2-20 33-50 (143)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=8e-32 Score=204.18 Aligned_cols=117 Identities=20% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...++.||||||++.+||++||+||+.|+...+ +.+..+
T Consensus 35 lGpsGsGK-STLLr~iaGl-~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~ 109 (381)
T 3rlf_A 35 VGPSGCGK-STLLRMIAGL-ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEV 109 (381)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHH
T ss_pred EcCCCchH-HHHHHHHHcC-CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 37999999 9999999999 89999999999999753 334567999999999999999999999987654 456677
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.++++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 110 ~~~~v~----~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 110 INQRVN----QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp HHHHHH----HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHH----HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 778888 99999999988888 999999999996 678999988 87
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=5.3e-32 Score=203.89 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=100.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec----Ch-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER----NL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~----~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
|++|||| |||+|+|+|+ .+|++|+|.++|+++ .. ...++.||||||++.+||++||+||+.|+...+ ...
T Consensus 37 GpsGsGK-STLLr~iaGl-~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~ 111 (359)
T 3fvq_A 37 GASGCGK-TTLLRCLAGF-EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGR 111 (359)
T ss_dssp ESTTSSH-HHHHHHHHTS-SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCC
T ss_pred CCCCchH-HHHHHHHhcC-CCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCC
Confidence 7899999 9999999999 899999999999986 22 334578999999999999999999999986543 334
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+.++++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 112 ~~~~~~~v~----~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 112 TAQERQRIE----AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp SHHHHHHHH----HHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred hHHHHHHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456667788 99999999988888 999999999996 688999988 87
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=1.9e-31 Score=201.21 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=102.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...|+.||||||++.+++.+||+||+.++.... +.
T Consensus 61 GpnGaGK-STLlr~i~GL-~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~ 135 (366)
T 3tui_C 61 GASGAGK-STLIRCVNLL-ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NT 135 (366)
T ss_dssp CCTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CC
T ss_pred cCCCchH-HHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CC
Confidence 7899999 9999999999 89999999999999742 234678999999999999999999999987654 34
Q ss_pred cHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++++. ++++.+||.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 136 ~~~~~~~~v~----~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 136 PKDEVKRRVT----ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA 190 (366)
T ss_dssp CHHHHHHHHH----HHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred CHHHHHHHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 5667777888 99999999888877 999999999995 678999998 87
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=3.4e-31 Score=199.32 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=101.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.||||||++.+|+++||+||+.|+...+ +.+..+
T Consensus 47 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~ 121 (355)
T 1z47_A 47 LGPSGSGK-TTILRLIAGL-ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDE 121 (355)
T ss_dssp ECSTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 37999999 9999999999 89999999999999743 334678999999999999999999999987543 344556
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.++++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 122 ~~~~v~----~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 122 MDARVR----ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHH----HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHH----HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 667788 99999999988887 999999999996 588999998 87
No 5
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.1e-31 Score=198.85 Aligned_cols=117 Identities=19% Similarity=0.101 Sum_probs=101.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.+|||||++.+|+++||+||+.|+...+ +.+..+
T Consensus 35 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~ 109 (362)
T 2it1_A 35 LGPSGSGK-STLLYTIAGI-YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREE 109 (362)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred ECCCCchH-HHHHHHHhcC-CCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHH
Confidence 38999999 9999999999 89999999999999743 223567999999999999999999999986543 344556
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+++++ ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 110 ~~~~v~----~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 110 IDKKVR----EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp HHHHHH----HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred HHHHHH----HHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 667788 99999999988887 999999999996 588999988 87
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.8e-31 Score=199.37 Aligned_cols=117 Identities=18% Similarity=0.037 Sum_probs=99.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.+|||||++.+|+++||+||+.|+...+ +.+..+
T Consensus 35 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~ 109 (359)
T 2yyz_A 35 LGPSGCGK-TTTLLMLAGI-YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDE 109 (359)
T ss_dssp ECSTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHH
T ss_pred EcCCCchH-HHHHHHHHCC-CCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHH
Confidence 38999999 9999999999 89999999999999743 233567999999999999999999999976543 233444
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.++++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 110 ~~~~v~----~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 110 VEKRVV----EIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp TTHHHH----HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 456777 99999999988887 999999999996 688999998 87
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.2e-30 Score=186.81 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=98.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh----hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ----FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~----~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. .. .++.+|||+|++.+++.+||+||+.++.......
T Consensus 37 iG~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~ 114 (235)
T 3tif_A 37 MGPSGSGK-STMLNIIGCL-DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114 (235)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSS
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhcc
Confidence 38999999 9999999999 89999999999998642 11 2346999999999999999999999876543222
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++.+. .++ .+|||||||||+ |+.+|++|+ ||
T Consensus 115 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP 172 (235)
T 3tif_A 115 AMSGEERRKRAL----ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172 (235)
T ss_dssp CCCHHHHHHHHH----HHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCHHHHHHHHH----HHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 334556667788 99999999764 365 999999999995 688999998 87
No 8
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=7.8e-31 Score=198.53 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=100.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.||||||+..+|+++||+||+.|+...+
T Consensus 35 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--- 109 (372)
T 1g29_1 35 LGPSGCGK-TTTLRMIAGL-EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--- 109 (372)
T ss_dssp ECSTTSSH-HHHHHHHHTS-SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---
T ss_pred ECCCCcHH-HHHHHHHHcC-CCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---
Confidence 37999999 9999999999 89999999999998632 223567999999999999999999999987553
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+..+.++++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 110 ~~~~~~~~~~v~----~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 110 KVPRQEIDQRVR----EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp TCCHHHHHHHHH----HHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred CCCHHHHHHHHH----HHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 344556667788 99999999988887 999999999996 688999998 87
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=5e-31 Score=198.42 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=100.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh------hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL------SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~------~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.+|||||++.+|+++||+||+.|+...+ +
T Consensus 37 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~ 111 (353)
T 1oxx_K 37 LGPSGAGK-TTFMRIIAGL-DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---K 111 (353)
T ss_dssp ECSCHHHH-HHHHHHHHTS-SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---S
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---C
Confidence 37999999 9999999999 89999999999998632 334678999999999999999999999976543 3
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+..+++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 112 ~~~~~~~~~v~----~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 112 MSKEEIRKRVE----EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp CCHHHHHHHHH----HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCHHHHHHHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 44556667788 99999999988887 999999999996 588999998 87
No 10
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=5.5e-31 Score=199.28 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||||+|+|+ .+|++|+|.++|+++.. ...++.||||||+..+|+++||+||+.|+...+ +.+..+
T Consensus 43 lGpnGsGK-STLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~ 117 (372)
T 1v43_A 43 LGPSGCGK-TTTLRMIAGL-EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDE 117 (372)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHH
T ss_pred ECCCCChH-HHHHHHHHcC-CCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHH
Confidence 37999999 9999999999 89999999999999743 233567999999999999999999999875433 344555
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.++|.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 118 ~~~~v~----~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 118 IDKRVR----WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp HHHHHH----HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 667788 99999999988887 999999999996 588999988 87
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=2.7e-30 Score=183.69 Aligned_cols=117 Identities=24% Similarity=0.200 Sum_probs=98.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---h---hhc-ceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---S---QFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~---~~r-~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. . .++ +.++||+|++.+++.+||+||+.++...+
T Consensus 36 iG~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--- 110 (224)
T 2pcj_A 36 IGASGSGK-STLLYILGLL-DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--- 110 (224)
T ss_dssp EECTTSCH-HHHHHHHTTS-SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---
Confidence 37899999 9999999999 89999999999998642 1 223 67999999999999999999999876543
Q ss_pred cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+....+..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 111 ~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (224)
T 2pcj_A 111 GKPKKEAKERGE----YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167 (224)
T ss_dssp TCCHHHHHHHHH----HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred CCCHHHHHHHHH----HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 233444556777 99999999887777 999999999996 578999998 87
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=3.9e-30 Score=186.86 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--h---hhhcceEEEEeeCccCCCCCCHHHHHHHHH-hcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--L---SQFRKLSCYIMQDNQLHANLTVEEAMNVAT-ALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~ 75 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++. . ..+++.+|||+|++.+++.+||+||+.++. ..+ +
T Consensus 56 iG~NGsGK-STLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~ 130 (263)
T 2olj_A 56 IGPSGSGK-STFLRCLNLL-EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---K 130 (263)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---C
T ss_pred EcCCCCcH-HHHHHHHHcC-CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---C
Confidence 37999999 9999999999 8999999999999873 1 234677999999999999999999999864 332 2
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+..+++. ++++.+++.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 131 ~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 131 WPREKAEAKAM----ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp CCHHHHHHHHH----HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCHHHHHHHHH----HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 33444556778 99999999887777 999999999995 688999998 87
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=3.8e-30 Score=186.74 Aligned_cols=117 Identities=25% Similarity=0.262 Sum_probs=98.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----------------hhhcceEEEEeeCccCCCCCCHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----------------SQFRKLSCYIMQDNQLHANLTVEEAMN 65 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----------------~~~r~~ig~v~q~~~l~~~ltv~e~l~ 65 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.+|||||++.+++.+||+||+.
T Consensus 38 iG~nGsGK-STLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~ 115 (262)
T 1b0u_A 38 IGSSGSGK-STFLRCINFL-EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 115 (262)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHH
Confidence 38999999 9999999999 89999999999998741 234667999999999999999999999
Q ss_pred HHH-hcccCccccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 66 VAT-ALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 66 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++. ..+ +....+..+++. ++++.+++.+. .++ .+|||||||||+ |+.+|+||+ ||
T Consensus 116 ~~~~~~~---~~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 180 (262)
T 1b0u_A 116 EAPIQVL---GLSKHDARERAL----KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180 (262)
T ss_dssp HHHHHTT---CCCHHHHHHHHH----HHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred hhHHHhc---CCCHHHHHHHHH----HHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 864 332 233444556778 99999999887 676 999999999995 688999998 87
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4.9e-30 Score=185.68 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...++.+||++|++.+++.+||+||+.++...+ .....
T Consensus 47 ~G~NGsGK-STLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~ 121 (256)
T 1vpl_A 47 IGPNGAGK-TTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSS 121 (256)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChH
Confidence 37899999 9999999999 89999999999998743 345678999999999999999999999875443 23344
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+++. ++++.+++.+..++ .+||||||||++ |+.+|+||+ ||
T Consensus 122 ~~~~~~~----~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 122 EIEEMVE----RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp HHHHHHH----HHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHH----HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4456677 99999999887777 999999999995 688999988 87
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=5.6e-30 Score=187.08 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=99.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--h---hhhcceEEEEeeCcc-CCCCCCHHHHHHHHHhcccCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--L---SQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~ 75 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++. . ..+++.||||||++. .+..+||+||+.++.... +
T Consensus 40 iGpnGsGK-STLl~~l~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~ 114 (275)
T 3gfo_A 40 LGGNGVGK-STLFQNFNGI-LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---K 114 (275)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---C
T ss_pred ECCCCCCH-HHHHHHHHcC-CCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---C
Confidence 38999999 9999999999 8999999999999973 2 345678999999963 444789999999987543 3
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+..+++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 115 ~~~~~~~~~~~----~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 115 LPEDEIRKRVD----NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp CCHHHHHHHHH----HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred CCHHHHHHHHH----HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 45666677888 99999999888887 999999999995 688999998 87
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=2e-30 Score=194.77 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=97.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ .+|++|+|.++|+++.. ...++.+|||||++.+|+++||+||+.|+...+ +....
T Consensus 32 lGpnGsGK-STLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~- 105 (348)
T 3d31_A 32 LGPTGAGK-TLFLELIAGF-HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDP- 105 (348)
T ss_dssp ECCCTHHH-HHHHHHHHTS-SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH---CCCCH-
T ss_pred ECCCCccH-HHHHHHHHcC-CCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHH-
Confidence 38999999 9999999999 89999999999999743 334678999999999999999999999986543 11111
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++. ++++.++|.+..++ .+|||||||||+ |+.+|++|+ ||
T Consensus 106 --~~v~----~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 106 --KRVL----DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp --HHHH----HHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred --HHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 5677 99999999988887 999999999996 578999988 87
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=3.8e-30 Score=184.73 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=96.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...++.+|||||++.+++.+||+||+.++...+ +. ..
T Consensus 30 iG~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~--~~ 102 (240)
T 2onk_A 30 LGPTGAGK-SVFLELIAGI-VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---ER--VE 102 (240)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---CH--HH
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---CC--ch
Confidence 48999999 9999999999 89999999999998743 334678999999999999999999998864322 11 12
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++.+..++ .+||||||||++ ++.+|++|+ ||
T Consensus 103 ~~~~~~----~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 103 RDRRVR----EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp HHHHHH----HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred HHHHHH----HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 245677 99999999887777 999999999995 688999988 87
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=1.2e-29 Score=183.54 Aligned_cols=120 Identities=15% Similarity=-0.001 Sum_probs=97.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCHHHHHHHHHhc-ccCc--
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTVEEAMNVATAL-KLGK-- 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~-~~~~-- 74 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...++.++||+|++.+++.+||+||+.++... +...
T Consensus 39 iG~nGsGK-STLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 116 (257)
T 1g6h_A 39 IGPNGSGK-STLINVITGF-LKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLN 116 (257)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHH
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCccc
Confidence 38999999 9999999999 89999999999998743 22456799999999999999999999986532 1100
Q ss_pred -------cccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 75 -------DLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 75 -------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.....+..+++. ++++.+++.+..++ .+|||||||||+ ++.+|+||+ ||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 117 SLFYKKWIPKEEEMVEKAF----KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp HHHHCSSCCCCHHHHHHHH----HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred ccccccccCCHHHHHHHHH----HHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 012233455677 99999999888777 999999999995 588999998 87
No 19
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=2.4e-29 Score=177.83 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=94.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++. ..++.++||+|++.+++.+||+||+.++...+ ... .+
T Consensus 41 iG~NGsGK-STLlk~l~Gl-~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~---~~~-~~- 111 (214)
T 1sgw_A 41 HGPNGIGK-TTLLKTISTY-LKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY---GVK-VN- 111 (214)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT---TCC-CC-
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc---CCc-hH-
Confidence 47899999 9999999999 8999999999999875 35778999999999999999999999875432 111 11
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+++. ++++.+++.+. ++ .+||||||||++ ++.+|++|+ ||
T Consensus 112 ~~~~~----~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 112 KNEIM----DALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp HHHHH----HHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred HHHHH----HHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 34567 89999999877 66 999999999995 578999998 87
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=4.9e-29 Score=178.80 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=94.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. .. .++.++|+||++.+++.+||+||+.++.... ..
T Consensus 38 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~ 111 (240)
T 1ji0_A 38 IGANGAGK-TTTLSAIAGL-VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KD 111 (240)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CC
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CC
Confidence 47899999 9999999999 89999999999998743 22 3456999999999999999999998864211 11
Q ss_pred HHHHHhhhccchHHHHHHhC-CCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLSG-HLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~-l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+..+.++ ++++.++ +.+..++ .+||||||||++ |+.+|+||+ ||
T Consensus 112 ~~~~~~~~~----~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 112 KEGIKRDLE----WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp SSHHHHHHH----HHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHH----HHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 223345667 8889994 8777766 999999999995 688999998 87
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=9.5e-29 Score=179.79 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=96.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++.. ...++.++|++|++.+++.+||+||+.++...+ ..
T Consensus 43 iG~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~ 115 (266)
T 4g1u_C 43 IGPNGAGK-STLLRLLTGY-LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GG 115 (266)
T ss_dssp ECCTTSCH-HHHHHHHTSS-SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CS
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----Cc
Confidence 37999999 9999999999 89999999999999743 445677999999999988999999999875432 11
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----Hhc------CCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVL------SPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~------~P~vl~--~~ 127 (127)
.+..+++. ++++.+++.+..++ .+|||||||||+ |+. +|+||+ ||
T Consensus 116 ~~~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEP 174 (266)
T 4g1u_C 116 SQDRQALQ----QVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP 174 (266)
T ss_dssp TTHHHHHH----HHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCC
T ss_pred HHHHHHHH----HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCc
Confidence 23345677 99999999888877 999999999995 577 999998 87
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=1.7e-28 Score=178.35 Aligned_cols=116 Identities=19% Similarity=0.098 Sum_probs=94.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++....+++.+|||+|++ .+++.+||+||+.++.... ....+
T Consensus 39 iG~nGsGK-STLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~ 112 (266)
T 2yz2_A 39 AGNTGSGK-STLLQIVAGL-IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRD 112 (266)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSC
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHH
Confidence 37899999 9999999999 8999999999999875435567899999995 5667789999999864321 11112
Q ss_pred HHhhhccchHHHHHHhCCC--ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHL--PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~--~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++. +..++ .+||||||||++ |+.+|+||+ ||
T Consensus 113 ~~~~~~----~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 165 (266)
T 2yz2_A 113 PVPLVK----KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165 (266)
T ss_dssp SHHHHH----HHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHH----HHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 234566 899999998 77777 999999999995 688999998 87
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=7.7e-28 Score=175.37 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=91.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-cccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~ 77 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.|+||+|++.+|+. ||+||+.++...... ....
T Consensus 51 ~G~nGsGK-STLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~ 127 (271)
T 2ixe_A 51 VGPNGSGK-STVAALLQNL-YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEIT 127 (271)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHH
Confidence 47899999 9999999999 89999999999998642 3456789999999998874 999999886421100 0000
Q ss_pred HHHHHhhhccchHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 78 KAARKDVFSMRDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.......+. ++++.+ ++....++ .+||||||||++ |+.+|+||+ ||
T Consensus 128 ~~~~~~~~~----~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 128 AVAMESGAH----DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHTCH----HHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHhHH----HHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 011122345 788888 67766666 999999999995 688999988 87
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=5.9e-28 Score=176.68 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC-----hhhhcceEEEEeeCccC--CCCCCHHHHHHHHHhcccC-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN-----LSQFRKLSCYIMQDNQL--HANLTVEEAMNVATALKLG- 73 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~-----~~~~r~~ig~v~q~~~l--~~~ltv~e~l~~~~~~~~~- 73 (127)
-|++|||| |||+|+|+|+ ++|++|+|.++|+++. ...+++.|+||+|++.+ ++.+||+||+.++......
T Consensus 53 iG~NGsGK-STLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~ 130 (279)
T 2ihy_A 53 YGLNGAGK-TTLLNILNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130 (279)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC------
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcccc
Confidence 37999999 9999999999 8999999999998864 23456789999999764 3457999999875321100
Q ss_pred ccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 74 KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
......+..+++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 131 ~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 131 YQDIDDEIRNEAH----QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP 188 (279)
T ss_dssp ---CCHHHHHHHH----HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred ccCCcHHHHHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 0111233345677 99999999888777 999999999995 688999998 87
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1.9e-27 Score=171.45 Aligned_cols=111 Identities=17% Similarity=0.081 Sum_probs=93.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+|+|+|+ ++|+ |+|.++|+++. ...+++.++|++|++.+++.+||+||+.++... ...
T Consensus 32 iG~NGsGK-STLlk~l~Gl-~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~- 103 (249)
T 2qi9_C 32 VGPNGAGK-STLLARMAGM-TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR- 103 (249)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC-
T ss_pred ECCCCCcH-HHHHHHHhCC-CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc-
Confidence 47899999 9999999999 8999 99999999863 244567899999999999999999999875311 111
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCc-------eee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPL-------ATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~-------vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+||||||||++ ++.+|+ +|+ ||
T Consensus 104 ---~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP 160 (249)
T 2qi9_C 104 ---TELLN----DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160 (249)
T ss_dssp ---HHHHH----HHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST
T ss_pred ---HHHHH----HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC
Confidence 34567 89999999888777 999999999995 578999 988 87
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=2.2e-27 Score=171.05 Aligned_cols=121 Identities=18% Similarity=0.041 Sum_probs=88.8
Q ss_pred CCCCCCChHHHHHHHHhCCC-CCCCcceEEECCEecCh---hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIK-TSGTEGSITINGHERNL---SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~-~~~~~G~i~i~G~~~~~---~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 76 (127)
-|++|||| |||+++|+|+. ++|++|+|.++|+++.. .. .+..++|++|++.+++.+||+||+.++.........
T Consensus 35 ~G~nGsGK-STLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (250)
T 2d2e_A 35 MGPNGAGK-STLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV 113 (250)
T ss_dssp ECSTTSSH-HHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCC
T ss_pred ECCCCCCH-HHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccC
Confidence 47899999 99999999972 36899999999998642 22 245699999999999999999999886431111011
Q ss_pred cHHHHHhhhccchHHHHHHhCCC-ccCCC--CC-CCHHHHHHHH----HhcCCceee--cC
Q psy1497 77 TKAARKDVFSMRDCHFLHLSGHL-PRGTL--LN-LSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~-LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...+..+++. ++++.+++. +..++ .+ ||||||||++ |+.+|+||+ ||
T Consensus 114 ~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 170 (250)
T 2d2e_A 114 GVAEFWTKVK----KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDET 170 (250)
T ss_dssp CHHHHHHHHH----HHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECG
T ss_pred CHHHHHHHHH----HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2333445677 999999994 66666 77 9999999995 678999998 87
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=1.4e-26 Score=167.24 Aligned_cols=110 Identities=15% Similarity=0.004 Sum_probs=89.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccC-ccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ ++|++|+|. .++.++||||++.+++.+||+||+.++...... .......
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 37 LGQNGCGK-STLLDLLLGI-HRPIQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp ECCSSSSH-HHHHHHHTTS-SCCSEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 37899999 9999999999 899999998 246799999999999999999999986432110 0011233
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++.+..++ .+||||||||++ ++.+|+||+ ||
T Consensus 105 ~~~~~~----~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 105 DYQVAM----QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp HHHHHH----HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred HHHHHH----HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677 99999999888777 999999999995 688999998 87
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=7.2e-27 Score=168.21 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|.++.. ..+++.|+||+|++.+|+ .||+||+.++.. ....
T Consensus 41 ~G~nGsGK-STLl~~l~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~ 112 (247)
T 2ff7_A 41 VGRSGSGK-STLTKLIQRF-YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSV 112 (247)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCCH
Confidence 37899999 9999999999 89999999999998642 445678999999999887 599999987531 1121
Q ss_pred HHHHhhhccchHHHHHHhCC-----------CccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGH-----------LPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l-----------~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. .+. ++++.+++ ....+. .+||||||||++ |+.+|+||+ ||
T Consensus 113 ~----~~~----~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEP 172 (247)
T 2ff7_A 113 E----KVI----YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA 172 (247)
T ss_dssp H----HHH----HHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred H----HHH----HHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 233 44444444 333333 899999999995 688999988 87
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=4e-27 Score=174.20 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=85.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ +.|++|+|.++|.++.. ..+|+.||||+|++.+|+. ||+||+.++.... ..
T Consensus 86 vG~sGsGK-STLl~ll~gl-~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~-----~~ 157 (306)
T 3nh6_A 86 VGPSGAGK-STILRLLFRF-YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTA-----GN 157 (306)
T ss_dssp ESSSCHHH-HHHHHHHTTS-SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTTC-----CH
T ss_pred ECCCCchH-HHHHHHHHcC-CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhcccC-----CH
Confidence 37899999 9999999999 89999999999999643 5678899999999999965 9999999864321 12
Q ss_pred HHHHhhhcc-chHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSM-RDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~-~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+..+..+. ...++++.+ |++...+. .+||||||||++ |+.+|+||+ ||
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEP 217 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEA 217 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 211111110 011333333 34333333 799999999996 578999988 77
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=7.1e-26 Score=164.65 Aligned_cols=120 Identities=16% Similarity=0.005 Sum_probs=92.8
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCcceEEECCEecCh---hhh-cceEEEEeeCccCCCCCCHHHHHHHHHh-c---c
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTEGSITINGHERNL---SQF-RKLSCYIMQDNQLHANLTVEEAMNVATA-L---K 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~G~i~i~G~~~~~---~~~-r~~ig~v~q~~~l~~~ltv~e~l~~~~~-~---~ 71 (127)
-|++|||| |||+|+|+|+ . +|++|+|.++|+++.. ... +..++|++|++.+++.+|+.||+.+... . .
T Consensus 52 ~G~NGsGK-STLlk~l~Gl-~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~ 129 (267)
T 2zu0_C 52 MGPNGSGK-STLSATLAGR-EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYR 129 (267)
T ss_dssp ECCTTSSH-HHHHHHHHTC-TTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGG
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhh
Confidence 47899999 9999999998 4 5799999999998642 222 3469999999999999999999987541 1 1
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--C-CCCHHHHHHHH----HhcCCceee--cC
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--L-NLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~-~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
........+..+++. ++++.+++. ...++ . +||||||||++ |+.+|+||+ ||
T Consensus 130 ~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 130 GQETLDRFDFQDLME----EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp GCCCCCHHHHHHHHH----HHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccccCCHHHHHHHHH----HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 000123344456677 999999996 45666 4 59999999995 578999998 87
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.4e-26 Score=168.18 Aligned_cols=110 Identities=22% Similarity=0.141 Sum_probs=90.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEE-EEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig-~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ . |++|+|.++|+++.....++.++ |++|++.+ .+||+||+.++...+ ..
T Consensus 36 ~G~NGsGK-STLlk~l~Gl-~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~---- 103 (263)
T 2pjz_A 36 LGPNGSGK-TTLLRAISGL-L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL---- 103 (263)
T ss_dssp ECCTTSSH-HHHHHHHTTS-S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----
T ss_pred ECCCCCCH-HHHHHHHhCC-C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----
Confidence 47899999 9999999999 8 99999999999864311256799 99999887 889999999875432 11
Q ss_pred HHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..+++. ++++.+++. +..++ .+||||||||++ ++.+|++|+ ||
T Consensus 104 ~~~~~~----~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 104 DRDLFL----EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp CHHHHH----HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred HHHHHH----HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 123566 899999998 77777 999999999995 688999998 87
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=3.5e-26 Score=164.16 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=87.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++.. ..+++.++||+|++.+|+. ||+||+.++... ....
T Consensus 34 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~~ 106 (243)
T 1mv5_A 34 AGPSGGGK-STIFSLLERF-YQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTD 106 (243)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhhccC----CCCH
Confidence 47899999 9999999999 89999999999998643 3456789999999998885 999999875211 1121
Q ss_pred HHHHhhhccchHHHHHHhCCCccCC-----------C--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGT-----------L--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~-----------~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+++.+..+ . .+||||||||++ ++.+|++|+ ||
T Consensus 107 ----~~~~----~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 107 ----EDLW----QVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp ----HHHH----HHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ----HHHH----HHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 2355 7777777765443 2 699999999995 688999988 87
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.9e-26 Score=174.37 Aligned_cols=107 Identities=21% Similarity=0.104 Sum_probs=87.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| |||+++|+|+ ++ ++|+|.++|+++.. ..+++.+|||||++.+|+ +||+||+.+.. ...
T Consensus 54 GpsGsGK-STLLr~iaGl-~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~-- 121 (390)
T 3gd7_A 54 GRTGSGK-STLLSAFLRL-LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS-- 121 (390)
T ss_dssp ESTTSSH-HHHHHHHHTC-SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC--
T ss_pred CCCCChH-HHHHHHHhCC-CC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC--
Confidence 7899999 9999999999 77 99999999998643 445788999999999998 59999996432 111
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CC-----------CCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LN-----------LSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~-----------LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+++. ++++.+++.+..++ .+ |||||||||+ |+.+|+||+ ||
T Consensus 122 --~~~v~----~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 122 --DQEIW----KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp --HHHHH----HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred --HHHHH----HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23456 88889999766665 44 9999999996 678999988 76
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=5.4e-25 Score=159.47 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=82.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++| +|+|.++|+++.. ..+++.|+||+|++.+|+ .||+||+.++.. ....
T Consensus 52 ~G~nGsGK-STLl~~l~Gl-~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~ 122 (260)
T 2ghi_A 52 VGHTGSGK-STIAKLLYRF-YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD 122 (260)
T ss_dssp ECSTTSSH-HHHHHHHTTS-SCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH
T ss_pred ECCCCCCH-HHHHHHHhcc-CCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH
Confidence 37899999 9999999999 776 8999999998632 446778999999999987 599999987531 1111
Q ss_pred HHHHhhhccchHHHHHHhCCCcc-----------CCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPR-----------GTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~-----------~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+++.+. .+. .+||||||||++ ++.+|+||+ ||
T Consensus 123 ----~~~~----~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 182 (260)
T 2ghi_A 123 ----EEVI----KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182 (260)
T ss_dssp ----HHHH----HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ----HHHH----HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 1233 44444444221 122 799999999995 688999988 87
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=1.6e-24 Score=171.76 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|+.++||+|++.+|+. |++||+.++... ....
T Consensus 375 vG~sGsGK-STLl~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~~ 447 (582)
T 3b60_A 375 VGRSGSGK-STIASLITRF-YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTE----EYSR 447 (582)
T ss_dssp EECTTSSH-HHHHHHHTTT-TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTS----CCCH
T ss_pred ECCCCCCH-HHHHHHHhhc-cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCC----CCCH
Confidence 37899999 9999999999 8999999999999964 35567889999999999986 999999886411 1222
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+.++.. .+++++.+ |++...+. .+||||||||++ ++.+|+|++ ||
T Consensus 448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp 507 (582)
T 3b60_A 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 2221111100 11333333 34333333 899999999996 578999988 87
No 36
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.91 E-value=4.9e-25 Score=174.63 Aligned_cols=118 Identities=22% Similarity=0.189 Sum_probs=85.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|+.++||+|++.+|+. |++||+.++.. ....
T Consensus 373 vG~sGsGK-STll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~ 444 (578)
T 4a82_A 373 VGMSGGGK-STLINLIPRF-YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD 444 (578)
T ss_dssp ECSTTSSH-HHHHTTTTTS-SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH
T ss_pred ECCCCChH-HHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH
Confidence 37999999 9999999999 8999999999999964 35678889999999999987 99999987632 1122
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .++.++.+ |++...+. .+||||||||++ ++.+|++++ ||
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEp 504 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 2221111100 11333332 33333333 799999999996 578999988 77
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=1.5e-24 Score=171.97 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|+.++||+|++.+|+. |++||+.++... ....
T Consensus 375 vG~sGsGK-STll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~~ 447 (582)
T 3b5x_A 375 VGRSGSGK-STIANLFTRF-YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEG----EYTR 447 (582)
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCC----CCCH
Confidence 48999999 9999999999 8999999999999863 35577889999999999986 999999886311 1222
Q ss_pred HHHHhhhccchHHHHHHhCC-----------CccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGH-----------LPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l-----------~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+ ++. ++++.+++ +...+. .+||||||||++ ++.+|+||+ ||
T Consensus 448 ~----~~~----~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp 507 (582)
T 3b5x_A 448 E----QIE----QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA 507 (582)
T ss_pred H----HHH----HHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 2 233 44444444 333333 799999999996 578999988 87
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=3.6e-25 Score=175.69 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=87.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|++++||+|++.+|+. |++||+.++... ...
T Consensus 375 vG~sGsGK-STll~~l~g~-~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~ 446 (587)
T 3qf4_A 375 LGETGSGK-STLMNLIPRL-IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED-----ATD 446 (587)
T ss_dssp ECSSSSSH-HHHHHTTTTS-SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCH
T ss_pred ECCCCCCH-HHHHHHHhCC-ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-----CCH
Confidence 37899999 9999999999 8999999999999864 35678889999999999977 999999876321 122
Q ss_pred HHHHhhhcc-chHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSM-RDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~-~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+. ..++.++.+ |++...+. .+||||||||++ ++.+|+||+ ||
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEp 506 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESC
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 222111110 011344443 44444444 899999999996 578999998 77
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.91 E-value=3.6e-24 Score=152.49 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=75.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++| .++|++|++.+++. ||+||+.++.... .....+.
T Consensus 40 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~~~~~ 103 (229)
T 2pze_A 40 AGSTGAGK-TSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSYD---EYRYRSV 103 (229)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCCC---HHHHHHH
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCCcC---hHHHHHH
Confidence 37899999 9999999999 899999999998 49999999999986 9999998753210 0000000
Q ss_pred H--hhhccchHHHHHHhCCCc--cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 K--DVFSMRDCHFLHLSGHLP--RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~--~~~~~~~~~~l~~~~l~~--~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ..+. +.++.+.... ..+. .+||||||||++ ++.+|++|+ ||
T Consensus 104 ~~~~~l~----~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 104 IKACQLE----EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp HHHTTCH----HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHhCcH----HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 0 1112 3333332211 1222 799999999995 688999988 87
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=2.5e-24 Score=171.02 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=86.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|+.++||+|++.+|+. |++||+.++...+ .....
T Consensus 376 vG~sGsGK-STLl~~l~g~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~ 450 (595)
T 2yl4_A 376 VGPSGSGK-STVLSLLLRL-YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVTA 450 (595)
T ss_dssp ECCTTSSS-THHHHHHTTS-SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSCH
T ss_pred ECCCCCCH-HHHHHHHhcC-cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccCH
Confidence 37899999 9999999999 8999999999999974 35567889999999999985 9999998864211 01122
Q ss_pred HHHHhhhccchHHHHHHhCCC-----------ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHL-----------PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~-----------~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+++. ++++.+++. ...+. .+||||||||++ ++.+|+||+ ||
T Consensus 451 ----~~~~----~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEp 510 (595)
T 2yl4_A 451 ----EEIQ----RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEA 510 (595)
T ss_dssp ----HHHH----HHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ----HHHH----HHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 2334 555555542 22222 789999999996 578999988 87
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1.5e-24 Score=172.49 Aligned_cols=118 Identities=20% Similarity=0.143 Sum_probs=84.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++. ...+|+.++||+|++.+|+. |++||+.++..- ...
T Consensus 387 vG~sGsGK-STll~~l~g~-~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~ 458 (598)
T 3qf4_B 387 VGPTGSGK-TTIVNLLMRF-YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG-----ATD 458 (598)
T ss_dssp ECCTTSST-THHHHHHTTS-SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-----CCT
T ss_pred ECCCCCcH-HHHHHHHhcC-cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-----CCH
Confidence 37899999 9999999999 8999999999999964 35678899999999999976 999999875321 111
Q ss_pred HHHHhhhccc-hHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMR-DCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~-~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++..+..+.. .++.++.+ |++..... .+||||||||++ ++.+|+||+ ||
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp 518 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 2221111100 11333332 22222222 799999999996 578999988 77
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=152.04 Aligned_cols=105 Identities=20% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++| .++||+|++.+ +.+||+||+.++.... . ...+.
T Consensus 37 ~G~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~---~-~~~~~ 99 (237)
T 2cbz_A 37 VGQVGCGK-SSLLSALLAE-MDKVEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLE---E-PYYRS 99 (237)
T ss_dssp ECSTTSSH-HHHHHHHTTC-SEEEEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCC---T-THHHH
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCccccC---H-HHHHH
Confidence 37899999 9999999999 899999999998 39999999865 5789999998764221 1 11111
Q ss_pred HhhhccchHHHHHHhCCCc-----cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLP-----RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~-----~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
..... .+++.+++.+ ..+. .+||||||||++ |+.+|+||+ ||
T Consensus 100 ~~~~~----~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 100 VIQAC----ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHT----TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHH----hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 01111 2233444321 1233 899999999995 688999988 87
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=1.6e-23 Score=178.08 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=87.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|.|+ +.|++|+|.|||.++. ...+|++|+||||++.+|+. |++||+.++... ...+.+
T Consensus 1112 G~SGsGK-STL~~lL~rl-~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~sd~ 1185 (1321)
T 4f4c_A 1112 GPSGCGK-STVVALLERF-YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVTMA 1185 (1321)
T ss_dssp CSTTSST-TSHHHHHTTS-SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSCHH
T ss_pred CCCCChH-HHHHHHHhcC-ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCCHH
Confidence 7899999 9999999999 9999999999999964 47789999999999999998 999999876421 123333
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccCC-C-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRGT-L-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~~-~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.+ .+++++.+ |++.... . .+||||||||++ |+.+|+||+ ||
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 1244 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 332222111 11333332 2222221 2 789999999996 578999988 65
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=8.2e-23 Score=173.44 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=87.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| |||+++|+|+ ++|++|+|.++|.++. ...+|+.||||+|++.+|+. |++||+.++..- ...+
T Consensus 423 G~sGsGK-STl~~ll~g~-~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~ 494 (1284)
T 3g5u_A 423 GNSGCGK-STTVQLMQRL-YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMD 494 (1284)
T ss_dssp CCSSSSH-HHHHHHTTTS-SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHH
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHH
Confidence 7899999 9999999999 9999999999999864 36678889999999999987 999999987421 2223
Q ss_pred HHHhhhccc-hHHHHHHhC--CCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLSG--HLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~~--l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.. .++.++.+. ++..... .+||||||||++ ++.+|+||+ ||
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEp 553 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 222221100 124555542 3322222 799999999996 578999988 77
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.88 E-value=1.3e-22 Score=172.51 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=87.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|++|||| |||+++|.|+ +.|++|+|.++|.++. ...+|+.|+||+|++.+|+. |++||+.|+.. ..+.+
T Consensus 451 G~sGsGK-STll~ll~~~-~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~ 522 (1321)
T 4f4c_A 451 GSSGCGK-STIISLLLRY-YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITRE 522 (1321)
T ss_dssp ECSSSCH-HHHHHHHTTS-SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHH
T ss_pred ecCCCcH-HHHHHHhccc-cccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHH
Confidence 7899999 9999999999 9999999999999964 46788999999999999988 99999998742 12333
Q ss_pred HHHhhhccc-hHHHHHHh--CCCccC-CC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSMR-DCHFLHLS--GHLPRG-TL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~~-~~~~l~~~--~l~~~~-~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+.++.+ .++.++.+ |.+... .. .+||||||||++ +..+|+|++ ||
T Consensus 523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~ 581 (1321)
T 4f4c_A 523 EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 581 (1321)
T ss_dssp HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Confidence 333222211 22444444 222211 22 899999999996 568999988 65
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.87 E-value=9.2e-23 Score=149.88 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=73.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ ++|++|+|.++| .++|++|++.+|+. ||+||+. +... .....
T Consensus 70 ~G~NGsGK-STLlk~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~~~------~~~~~ 129 (290)
T 2bbs_A 70 AGSTGAGK-TSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GVSY------DEYRY 129 (290)
T ss_dssp EESTTSSH-HHHHHHHTTS-SCEEEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TTCC------CHHHH
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cccc------chHHH
Confidence 37899999 9999999999 899999999988 49999999999886 9999997 3211 11111
Q ss_pred H-----hhhccchHHHHHHhCCCc--cCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 K-----DVFSMRDCHFLHLSGHLP--RGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~-----~~~~~~~~~~l~~~~l~~--~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
. ..+. +.++.+.... ..+. .+||||||||++ ++.+|++|+ ||
T Consensus 130 ~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 130 RSVIKACQLE----EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HHHHHHTTCH----HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHhChH----HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 0 0112 3333332211 1222 799999999995 688999988 87
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=4.6e-22 Score=168.84 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=84.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC---hhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~---~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
|.+|||| |||+++|+|+ ++|++|+|.++|+++. ...+|++++||||++.+|+. |++||+.++.... ....+
T Consensus 1066 G~sGsGK-STl~~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~~ 1139 (1284)
T 3g5u_A 1066 GSSGCGK-STVVQLLERF-YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSYE 1139 (1284)
T ss_dssp CSSSTTH-HHHHHHHTTS-SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCHH
T ss_pred CCCCCCH-HHHHHHHhcC-cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCHH
Confidence 7899999 9999999999 8999999999999864 35678899999999988865 9999998764221 12222
Q ss_pred HHHhhhcc-chHHHHHHh--CCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 80 ARKDVFSM-RDCHFLHLS--GHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 80 ~~~~~~~~-~~~~~l~~~--~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+..+..+. ..+++++.+ |++..... .+||||||||++ |+.+|+||+ ||
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEp 1198 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESC
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22221110 011333333 22222222 789999999996 578999988 87
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=2.3e-21 Score=154.48 Aligned_cols=103 Identities=17% Similarity=0.014 Sum_probs=83.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.+ +..++|+||++.+++.+||.|++....... ...
T Consensus 388 ~G~NGsGK-STLlk~l~Gl-~~p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~ 448 (607)
T 3bk7_A 388 VGPNGIGK-TTFVKMLAGV-EEPTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNS 448 (607)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHC
T ss_pred ECCCCCCH-HHHHHHHhcC-CCCCceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCH
Confidence 37899999 9999999999 8999999986 246999999988888899999876531110 011
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 449 ~~~~~----~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 449 NFYKT----ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp HHHHH----HTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred HHHHH----HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 24566 88999999887777 999999999995 678999998 87
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=2.1e-21 Score=152.83 Aligned_cols=105 Identities=15% Similarity=-0.005 Sum_probs=84.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.+++ ..++|++|+......+||.+|+.+..... .. ..
T Consensus 300 ~G~nGsGK-STLl~~l~Gl-~~p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~ 362 (538)
T 3ozx_A 300 LGPNGIGK-TTFARILVGE-ITADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TS 362 (538)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TT
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCcEEEECC---------eeeEeechhcccccCCCHHHHHHHhhhhc----cc--hh
Confidence 37899999 9999999999 899999998764 35899999977777889999998742111 00 01
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
...++ ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 363 ~~~~~----~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 363 SWFFE----EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SHHHH----HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHHHH----HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22355 88899999888877 999999999995 678999998 87
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.83 E-value=4.5e-21 Score=150.97 Aligned_cols=103 Identities=20% Similarity=0.035 Sum_probs=82.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ .+|++|+|.+ ...++|++|++..++.+||.+++....... .. .
T Consensus 318 ~G~NGsGK-STLlk~l~Gl-~~p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~----~~---~ 378 (538)
T 1yqt_A 318 VGPNGIGK-TTFVKMLAGV-EEPTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASK----LN---S 378 (538)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH----HT---C
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccC----CC---H
Confidence 37899999 9999999999 8999999986 236999999988888899988876531111 00 1
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 379 ~~~~~----~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP 428 (538)
T 1yqt_A 379 NFYKT----ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428 (538)
T ss_dssp HHHHH----HTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred HHHHH----HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 23466 88999999877777 999999999995 578999988 87
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.8e-19 Score=141.70 Aligned_cols=102 Identities=13% Similarity=-0.091 Sum_probs=79.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|++|||| |||+++|+|+ .+|++|+. +. +..++|++|+.......||.+++.... +. ... ..
T Consensus 385 G~NGsGK-STLlk~l~Gl-~~p~~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~ 445 (608)
T 3j16_B 385 GENGTGK-TTLIKLLAGA-LKPDEGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NP 445 (608)
T ss_dssp SCTTSSH-HHHHHHHHTS-SCCSBCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SH
T ss_pred CCCCCcH-HHHHHHHhcC-CCCCCCcC------cc----CCcEEEecccccccCCccHHHHHHHHh--hc--ccc---cH
Confidence 7899999 9999999999 89999962 11 346999999977666679999875422 11 111 11
Q ss_pred hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 446 ~~~~----~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP 494 (608)
T 3j16_B 446 QFQT----DVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494 (608)
T ss_dssp HHHH----HTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHHH----HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3455 88999999888877 999999999996 578999998 87
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=5.3e-20 Score=146.63 Aligned_cols=108 Identities=14% Similarity=-0.064 Sum_probs=81.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE---------EECCEecCh---h--hhcceEEEEeeCccCCCC---CCHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI---------TINGHERNL---S--QFRKLSCYIMQDNQLHAN---LTVEEAM 64 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i---------~i~G~~~~~---~--~~r~~ig~v~q~~~l~~~---ltv~e~l 64 (127)
-|++|||| |||+++|+|+ +.|++|++ .++|.++.. . ..+..+++++|....++. .|+.|++
T Consensus 123 iG~NGsGK-STLlkiL~Gl-l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l 200 (607)
T 3bk7_A 123 VGPNGTGK-TTAVKILAGQ-LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL 200 (607)
T ss_dssp ECCTTSSH-HHHHHHHTTS-SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHH
T ss_pred ECCCCChH-HHHHHHHhCC-CCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHh
Confidence 37899999 9999999999 89999996 456665421 1 123468899987543322 2899987
Q ss_pred HHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 65 NVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... . ..++++ ++++.+||.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 201 ~~~-------~-----~~~~~~----~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEP 255 (607)
T 3bk7_A 201 KKV-------D-----EVGKFE----EVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP 255 (607)
T ss_dssp HHT-------C-----CSSCHH----HHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred hhh-------H-----HHHHHH----HHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 531 0 113456 89999999887777 999999999995 678999998 87
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=1e-19 Score=143.26 Aligned_cols=108 Identities=13% Similarity=-0.080 Sum_probs=80.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE---------EECCEecCh---h--hhcceEEEEeeCccCCCC---CCHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI---------TINGHERNL---S--QFRKLSCYIMQDNQLHAN---LTVEEAM 64 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i---------~i~G~~~~~---~--~~r~~ig~v~q~~~l~~~---ltv~e~l 64 (127)
-|++|||| |||+|+|+|+ ++|++|++ .++|.++.. . ..+..+++++|...+++. .|+.+++
T Consensus 53 vG~NGaGK-STLlk~l~Gl-~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~ 130 (538)
T 1yqt_A 53 VGPNGTGK-STAVKILAGQ-LIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL 130 (538)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHH
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHH
Confidence 37899999 9999999999 89999996 456655421 1 123468899997654432 2788876
Q ss_pred HHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 65 NVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
... +..+++. ++++.+|+.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 131 ~~~------------~~~~~~~----~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 131 KKA------------DETGKLE----EVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185 (538)
T ss_dssp HHH------------CSSSCHH----HHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hhh------------hHHHHHH----HHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 421 0123456 89999999877777 999999999995 678999998 88
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.73 E-value=7.2e-19 Score=138.44 Aligned_cols=106 Identities=13% Similarity=-0.030 Sum_probs=75.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceE-----------EECCEecCh---hhh--cceEEEEeeC----ccCCCCCCHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSI-----------TINGHERNL---SQF--RKLSCYIMQD----NQLHANLTVEE 62 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i-----------~i~G~~~~~---~~~--r~~ig~v~q~----~~l~~~ltv~e 62 (127)
|++|||| |||+|+|+|+ +.|++|+| .++|.++.. ... ...+...+|. +.++. .++.+
T Consensus 32 GpNGaGK-STLlkiL~Gl-~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 108 (538)
T 3ozx_A 32 GKNGVGK-TTVLKILAGE-IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNE 108 (538)
T ss_dssp CCTTSSH-HHHHHHHTTS-SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHH
T ss_pred CCCCCcH-HHHHHHHhcC-CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-CcHHH
Confidence 7899999 9999999999 89999998 577766421 111 1234444443 22333 36766
Q ss_pred HHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 63 AMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 63 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
++... ...+.++ ++++.+++....++ .+|||||||||+ |+.+|+||+ ||
T Consensus 109 ~l~~~------------~~~~~~~----~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEP 165 (538)
T 3ozx_A 109 ILTKI------------DERGKKD----EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQP 165 (538)
T ss_dssp HHHHH------------CCSSCHH----HHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred Hhhcc------------hhHHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 54311 1123455 89999999888887 999999999995 678999998 87
No 55
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.69 E-value=6.6e-21 Score=138.67 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=57.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|++|||| |||+|+|+|+ ..|++|+|.++|.++.....++.++|++|++.+++.+||.||+.++..... ... .
T Consensus 9 G~nGaGK-STLln~L~g~-~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~----~ 80 (270)
T 3sop_A 9 GQSGLGK-STLVNTLFKS-QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC----W 80 (270)
T ss_dssp ESSSSSH-HHHHHHHHHH-HC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC----S
T ss_pred CCCCCCH-HHHHHHHhCC-CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH----H
Confidence 7899999 9999999999 899999999999987555556789999999999999999999988654321 000 1
Q ss_pred hhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHh
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNV 118 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~ 118 (127)
+.+. ++++ ....+. .+||+||+||++++
T Consensus 81 ~~i~----~~~~----~~~~~~~~~~LS~G~~qrv~ia 110 (270)
T 3sop_A 81 EPIE----KYIN----EQYEKFLKEEVNIARKKRIPDT 110 (270)
T ss_dssp HHHH----HHHH----HHHHHHHHHHSCTTCCSSCCCC
T ss_pred HHHH----HHHH----HHHHhhhHHhcCcccchhhhhh
Confidence 1122 2222 112222 78999999999764
No 56
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-19 Score=139.53 Aligned_cols=107 Identities=9% Similarity=-0.133 Sum_probs=81.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc-e-EEECCEecChhhhcceEEEEeeCcc---CCCCCCHHHHHHHHHhcccCcccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG-S-ITINGHERNLSQFRKLSCYIMQDNQ---LHANLTVEEAMNVATALKLGKDLT 77 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G-~-i~i~G~~~~~~~~r~~ig~v~q~~~---l~~~ltv~e~l~~~~~~~~~~~~~ 77 (127)
|++|||| |||+|+|+|+ ..|++| + |+++|. .++.++|+||+.. +++.+|+++|+ ++..... +.
T Consensus 145 GpnGsGK-STLlr~L~Gl-~~p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~--~~- 212 (460)
T 2npi_A 145 GGSQTGK-TSLSRTLCSY-ALKFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTS--GA- 212 (460)
T ss_dssp ESTTSSH-HHHHHHHHHT-THHHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBS--SC-
T ss_pred CCCCCCH-HHHHHHHhCc-ccccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-ccccccc--Cc-
Confidence 7899999 9999999999 899999 9 999982 3678999999974 45567999988 6543211 11
Q ss_pred HHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH------HhcCCce----ee--c-C
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF------NVLSPLA----TY--E-P 127 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~------l~~~P~v----l~--~-~ 127 (127)
...+.+. .+++.+|+.+..+..+||||||||++ |+.+|++ |+ | |
T Consensus 213 --~~~~~~~----~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 213 --TLLHNKQ----PMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp --CSSCCBC----CEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred --chHHHHH----HHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 1124456 78888998765444789999999994 6678998 77 7 5
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.7e-17 Score=129.20 Aligned_cols=110 Identities=13% Similarity=-0.036 Sum_probs=71.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE-----------EECCEecCh---hhhcceE--EEEeeCccC------CCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI-----------TINGHERNL---SQFRKLS--CYIMQDNQL------HANLT 59 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i-----------~i~G~~~~~---~~~r~~i--g~v~q~~~l------~~~lt 59 (127)
-|++|||| |||+|+|+|+ +.|++|+| .+.|.++.. ......+ .+.+|.... .+..+
T Consensus 109 vGpNGaGK-STLLkiL~Gl-l~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (608)
T 3j16_B 109 VGTNGIGK-STALKILAGK-QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186 (608)
T ss_dssp ECCTTSSH-HHHHHHHHTS-SCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSH
T ss_pred ECCCCChH-HHHHHHHhcC-CCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhH
Confidence 37999999 9999999999 89999998 334433211 1111222 223332111 11224
Q ss_pred HHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 60 VEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 60 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
+.+++.... . ...+++. ++++.+++.+..++ .+|||||||||+ |+.+|+||+ ||
T Consensus 187 v~~~l~~~~------~----~~~~~~~----~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEP 248 (608)
T 3j16_B 187 VGELLKLRM------E----KSPEDVK----RYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEP 248 (608)
T ss_dssp HHHHHHHHC------C----SCHHHHH----HHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred HHHHHhhhh------h----hHHHHHH----HHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 444433210 0 0123566 89999999888777 999999999996 578999988 87
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.66 E-value=3.6e-17 Score=131.42 Aligned_cols=121 Identities=17% Similarity=0.049 Sum_probs=53.8
Q ss_pred CCCCCChHHHHH---------------------HHHhCCCCCCC-------cceEEECCEecChhhhcceEEEEeeCc--
Q psy1497 3 KNFGSDIDKYLL---------------------QTSGRIKTSGT-------EGSITINGHERNLSQFRKLSCYIMQDN-- 52 (127)
Q Consensus 3 ~~~GsGK~STLl---------------------~~l~gl~~~~~-------~G~i~i~G~~~~~~~~r~~ig~v~q~~-- 52 (127)
|++|||| |||+ +++.++ ..|+ .|.|.++|.+... ..+..+++++|..
T Consensus 51 GpNGaGK-STLl~~~~~~~~~~~~~~~l~~~~~~~l~~l-~~~~~~~i~~~~~~i~~~~~~~~~-~~~~~ig~v~q~~~~ 127 (670)
T 3ux8_A 51 GLSGSGK-SSLAFDTIYAEGQRRYVESLSAYARQFLGQM-EKPDVDAIEGLSPAISIDQKTTSR-NPRSTVGTVTEIYDY 127 (670)
T ss_dssp CSTTSSH-HHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSCC------CCBHHHHTTCC--
T ss_pred CCCCCCH-HHHhcccccccccccccccchhhhhhhhccc-ccCCccceeccccceEecCchhhc-cchhceeeeechhhh
Confidence 7899999 9998 888898 7888 4455566554321 1123344444432
Q ss_pred -----------------cCCCCCCHHHHHHHHHhcccCccccHHHHHhhhcc--chHHHHHHhCCCcc-CCC--CCCCHH
Q psy1497 53 -----------------QLHANLTVEEAMNVATALKLGKDLTKAARKDVFSM--RDCHFLHLSGHLPR-GTL--LNLSGL 110 (127)
Q Consensus 53 -----------------~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~-~~~--~~LSgG 110 (127)
..++.+||.||+.+....... ...........++ +...+++.+||.+. .++ .+||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGG 206 (670)
T 3ux8_A 128 LRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-EKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGG 206 (670)
T ss_dssp -----------------------CC---------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCHH
T ss_pred HHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-hhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHH
Confidence 235678999999875322110 0000111111110 01135888999764 455 999999
Q ss_pred HHHHHH----HhcCCc--eee--cC
Q psy1497 111 WGIGVF----NVLSPL--ATY--EP 127 (127)
Q Consensus 111 ~rqrv~----l~~~P~--vl~--~~ 127 (127)
|||||+ |+.+|+ ||+ ||
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEP 231 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEP 231 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECT
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECC
Confidence 999995 577888 777 87
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=4.4e-17 Score=135.03 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccC----CCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL----HANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l----~~~ltv~e~l~~ 66 (127)
-|++|||| |||+|+|+|+ +.|++|+|+++|. ..++|++|+... ....|+.+++.+
T Consensus 705 iGpNGSGK-STLLklLaGl-l~P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~ 763 (986)
T 2iw3_A 705 IGPNGAGK-STLINVLTGE-LLPTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQW 763 (986)
T ss_dssp CSCCCHHH-HHHHHHHTTS-SCCSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHhCC-CCCCceEEEEcCc--------cceEeeccchhhhhhcccccCHHHHHHH
Confidence 48999999 9999999999 8999999999862 247888876421 233567776654
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.61 E-value=3.3e-16 Score=129.80 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc-cCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-QLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+|+|+| |+| +|.+.. . ..+++|++|+. .+++.+|+.||+.+ ... +.
T Consensus 467 iGpNGsGK-STLLk~Lag-------G~i--~g~~~~-~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~---- 524 (986)
T 2iw3_A 467 CGPNGCGK-STLMRAIAN-------GQV--DGFPTQ-E--ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT---- 524 (986)
T ss_dssp ECSTTSSH-HHHHHHHHH-------TCS--TTCCCT-T--TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC----
T ss_pred ECCCCCCH-HHHHHHHhC-------CCc--CCCccc-c--ceeEEEEcccccccccCCcHHHHHHH--hhc---CH----
Confidence 48999999 999999984 222 233321 1 12478999874 78889999999975 111 11
Q ss_pred HHhhhccchHHHHHHhCCC-ccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 81 RKDVFSMRDCHFLHLSGHL-PRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~-~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+++. ++++.+|+. +..++ .+||||||||++ ++.+|+||+ ||
T Consensus 525 -~~~v~----~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 525 -KEAIK----DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp -HHHHH----HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred -HHHHH----HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 34577 899999995 45555 999999999995 678999998 87
No 61
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.60 E-value=6.4e-18 Score=125.19 Aligned_cols=100 Identities=10% Similarity=-0.055 Sum_probs=74.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ +.|+.|. ..+++|+|++.+++. |+.||+.+... + +.+....
T Consensus 96 ~G~sGsGK-STL~~~L~gl-l~~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~---g~~~~~d 154 (312)
T 3aez_A 96 AGSVAVGK-STTARVLQAL-LARWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-K---GFPESYN 154 (312)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HHTSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T---TSGGGBC
T ss_pred ECCCCchH-HHHHHHHHhh-ccccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-c---CCChHHH
Confidence 37899999 9999999999 7887663 468999999999988 99999755321 1 1222222
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.+. ++++.++ ....+. .+||+||+||++ ++.+|+||+ ||
T Consensus 155 ~~~~~----~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep 203 (312)
T 3aez_A 155 RRALM----RFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGL 203 (312)
T ss_dssp HHHHH----HHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred HHHHH----HHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCc
Confidence 34455 7788887 444444 899999999995 578999988 55
No 62
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.55 E-value=1.9e-15 Score=113.68 Aligned_cols=101 Identities=13% Similarity=-0.025 Sum_probs=74.3
Q ss_pred CCCCCChHHHHHHHHhCCCCC-CCcceEEEC-CEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS-GTEGSITIN-GHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~-G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
|++|||| |||+|+|+|+ .. ++.|+|.++ |..... ..+..+++++|+..+++..+++++ . +. +....+
T Consensus 222 G~sG~GK-STLln~L~g~-~~~~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~---~--l~---~l~~~e 290 (358)
T 2rcn_A 222 GQSGVGK-SSLLNALLGL-QNEILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF---G--LW---HLEPEQ 290 (358)
T ss_dssp CCTTSSH-HHHHHHHHCC-SSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC---C--CC---CCCHHH
T ss_pred CCCCccH-HHHHHHHhcc-ccccccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh---h--hc---CCCHHH
Confidence 7899999 9999999999 78 999999987 765432 235679999999989888888884 1 11 345566
Q ss_pred HHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHHhc
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFNVL 119 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l~~ 119 (127)
..+.+. ++++.+++....++ .+|| ||+||++++.
T Consensus 291 ~~~~~~----e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~ 326 (358)
T 2rcn_A 291 ITQGFV----EFHDYLGHCKYRDCKHDADP-GCAIREAVEN 326 (358)
T ss_dssp HHHTSG----GGGGGTTCSSSTTCCSSSCT-TCHHHHHHHH
T ss_pred HHHHHH----HHHHHcCCchhcCCCcccCC-HHHHHHHHHh
Confidence 667788 99999999988887 8999 9999998764
No 63
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.49 E-value=6.1e-16 Score=114.10 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=76.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChh-------hh--cceEEEEeeCcc-CCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~-------~~--r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~ 71 (127)
-|++|||| |||+++|+|+ +.|++|+|.+.|.+.... .+ +..++|++|++. +++.+++++++.++...
T Consensus 106 vG~nGsGK-TTll~~Lag~-l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~- 182 (302)
T 3b9q_A 106 VGVNGGGK-TTSLGKLAHR-LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE- 182 (302)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHT-
T ss_pred EcCCCCCH-HHHHHHHHHH-HHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHc-
Confidence 37899999 9999999999 889999999999886421 12 347999999988 99999999999875321
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHHH----hcCCc--eee
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVFN----VLSPL--ATY 125 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~l----~~~P~--vl~ 125 (127)
. ... .+++.+|+.+..+. .+|| +||+++ +.+|+ +|+
T Consensus 183 ---~--------~d~----~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 183 ---G--------YDV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp ---T--------CSE----EEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred ---C--------Ccc----hHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEE
Confidence 1 112 45667788655444 7899 788764 57899 765
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.47 E-value=4.6e-17 Score=114.34 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=56.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec--ChhhhcceEEEEeeCccCCCCCCHHHHH-HHHHhcccCccccH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER--NLSQFRKLSCYIMQDNQLHANLTVEEAM-NVATALKLGKDLTK 78 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~--~~~~~r~~ig~v~q~~~l~~~ltv~e~l-~~~~~~~~~~~~~~ 78 (127)
-|++|||| |||+++|+|+ +|++|+|.. .++ .....++.+||+||++ .||+ .+...... ....
T Consensus 28 iG~nGsGK-STLl~~l~Gl--~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~--~~~~ 92 (208)
T 3b85_A 28 LGPAGSGK-TYLAMAKAVQ--ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHD--ALRD 92 (208)
T ss_dssp ECCTTSST-THHHHHHHHH--HHHTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHH--HHTT
T ss_pred ECCCCCCH-HHHHHHHhcC--CCcCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHH--HHHH
Confidence 37899999 9999999998 689999943 222 1123467899999976 4444 22110000 0000
Q ss_pred HHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 79 AARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
....+.++ ++++. ++ |||||++ ++.+|+||+ ||
T Consensus 93 ~~~~~~~~----~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 93 MVEPEVIP----KLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp TSCTTHHH----HHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred hccHHHHH----HHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCC
Confidence 00012344 55554 33 9999996 578999988 77
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.45 E-value=7.6e-14 Score=112.15 Aligned_cols=58 Identities=21% Similarity=0.052 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcCC---ceee-
Q psy1497 57 NLTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLSP---LATY- 125 (127)
Q Consensus 57 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~P---~vl~- 125 (127)
.+||.||+.+.... . ..++.. +.++.+++.. ..++ .+|||||||||+ |+.+| +||+
T Consensus 504 ~ltv~e~l~~~~~~------~---~~~~~~----~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 504 DMTVEDALDFFASI------P---KIKRKL----ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TSBHHHHHHHTTTC------H---HHHHHH----HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred hCCHHHHHHHHHHh------h---hHHHHH----HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 47888888775321 1 112345 7788899864 3455 999999999996 46666 5877
Q ss_pred -cC
Q psy1497 126 -EP 127 (127)
Q Consensus 126 -~~ 127 (127)
||
T Consensus 571 DEP 573 (670)
T 3ux8_A 571 DEP 573 (670)
T ss_dssp EST
T ss_pred eCC
Confidence 87
No 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.44 E-value=1e-15 Score=117.17 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=71.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 82 (127)
|.+|||| |||+|+|+|+ .+|++|+|.++|.+.. + .++++|++ .++.+|+.|++.++. . .
T Consensus 76 G~nGaGK-STLln~L~Gl-~~p~~GsI~~~g~~~t----~--~~~v~q~~-~~~~ltv~D~~g~~~--------~----~ 134 (413)
T 1tq4_A 76 GETGSGK-SSFINTLRGI-GNEEEGAAKTGVVEVT----M--ERHPYKHP-NIPNVVFWDLPGIGS--------T----N 134 (413)
T ss_dssp ECTTSSH-HHHHHHHHTC-CTTSTTSCCCCC--------C--CCEEEECS-SCTTEEEEECCCGGG--------S----S
T ss_pred CCCCCcH-HHHHHHHhCC-CCccCceEEECCeecc----e--eEEecccc-ccCCeeehHhhcccc--------h----H
Confidence 7899999 9999999999 8999999999997653 1 27899984 577888888764431 0 1
Q ss_pred hhhccchHHHHHHhCCCccCCCCCCCHH--HHHHHH----Hhc----------CCceee
Q psy1497 83 DVFSMRDCHFLHLSGHLPRGTLLNLSGL--WGIGVF----NVL----------SPLATY 125 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~~~~~~LSgG--~rqrv~----l~~----------~P~vl~ 125 (127)
..++ ++++.+++.+....-.||+| |+||++ ++. +|++++
T Consensus 135 ~~~~----~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 135 FPPD----TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp CCHH----HHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred HHHH----HHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 2455 88999988654333239999 999995 455 777765
No 67
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.43 E-value=3.4e-15 Score=112.48 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=78.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChh-------hh--cceEEEEeeCcc-CCCCCCHHHHHHHHHhcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHANLTVEEAMNVATALK 71 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~-------~~--r~~ig~v~q~~~-l~~~ltv~e~l~~~~~~~ 71 (127)
-|.+|||| |||+++|+|+ +.|++|+|.+.|.++... .+ +..++|++|++. +++.+++++++.++...
T Consensus 163 vG~nGsGK-TTll~~Lag~-l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~- 239 (359)
T 2og2_A 163 VGVNGGGK-TTSLGKLAHR-LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE- 239 (359)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT-
T ss_pred EcCCCChH-HHHHHHHHhh-ccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhC-
Confidence 37899999 9999999999 889999999999886421 12 457999999988 89999999999875421
Q ss_pred cCccccHHHHHhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCc--eee
Q psy1497 72 LGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPL--ATY 125 (127)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~--vl~ 125 (127)
. .-. .+++.+|+.+..+. .+|| +||++ ++.+|+ +|+
T Consensus 240 ---~--------~d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLv 283 (359)
T 2og2_A 240 ---G--------YDV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLV 283 (359)
T ss_dssp ---T--------CSE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEE
T ss_pred ---C--------CHH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEE
Confidence 1 012 44567787655444 7899 77775 457899 765
No 68
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=4.9e-15 Score=109.11 Aligned_cols=109 Identities=4% Similarity=-0.152 Sum_probs=71.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE---CCEecCh--hhhc-ceEEEEeeCccCC-----CCCCHHHHH--HHH-
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI---NGHERNL--SQFR-KLSCYIMQDNQLH-----ANLTVEEAM--NVA- 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i---~G~~~~~--~~~r-~~ig~v~q~~~l~-----~~ltv~e~l--~~~- 67 (127)
-|++|||| |||+|+|+ + ..|++|+|.+ +|++... ...+ ..+||++|.+.+. +.+|+ |++ .|.
T Consensus 171 ~G~sG~GK-STLln~l~-~-~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~ 246 (302)
T 2yv5_A 171 AGPSGVGK-SSILSRLT-G-EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFRE 246 (302)
T ss_dssp ECSTTSSH-HHHHHHHH-S-CCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGG
T ss_pred ECCCCCCH-HHHHHHHH-H-hhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHH
Confidence 37899999 99999999 8 8999999999 8887643 1122 3689999998654 78899 887 333
Q ss_pred -----HhcccCccccHHHHHhhhccchHHHHHHhCCCc-cCCC--CCCCHHHHHHHHHhcC
Q psy1497 68 -----TALKLGKDLTKAARKDVFSMRDCHFLHLSGHLP-RGTL--LNLSGLWGIGVFNVLS 120 (127)
Q Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--~~LSgG~rqrv~l~~~ 120 (127)
+.++ ......+....+. ++++.++|.+ ..+. ..||+.++++++|+.+
T Consensus 247 ~~~~~c~~~--~~~~~~e~~~~v~----~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 247 FLRYQCKYP--DCTHTNEPGCAVK----EAVKNGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GHHHHHHST--TCCSSSCTTCHHH----HHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred HHHccCCCC--CCCCCCCCCCHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1121 1112222334566 9999999975 4444 8888866666778753
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.34 E-value=4.5e-15 Score=109.61 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=58.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHH-HHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE-AMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e-~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|+|+ + +|+|. +|++|++.+|+. |+++ |+.+.. ....
T Consensus 132 vGpsGsGK-STLl~lL~gl-~---~G~I~---------------~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-- 182 (305)
T 2v9p_A 132 IGPPNTGK-SMLCNSLIHF-L---GGSVL---------------SFANHKSHFWLA-SLADTRAALVD------DATH-- 182 (305)
T ss_dssp ECSSSSSH-HHHHHHHHHH-H---TCEEE---------------CGGGTTSGGGGG-GGTTCSCEEEE------EECH--
T ss_pred ECCCCCcH-HHHHHHHhhh-c---CceEE---------------EEecCccccccc-cHHHHhhccCc------cccH--
Confidence 47899999 9999999999 7 79883 456777777765 6665 665431 1111
Q ss_pred HHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHH-HHhcCCceee
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGV-FNVLSPLATY 125 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv-~l~~~P~vl~ 125 (127)
.+. ++++.+ +.+..+-.+||||||||. +++.+|+||+
T Consensus 183 ---~~~----~~i~~~-L~~gldg~~LSgGqkQRARAll~~p~iLl 220 (305)
T 2v9p_A 183 ---ACW----RYFDTY-LRNALDGYPVSIDRKHKAAVQIKAPPLLV 220 (305)
T ss_dssp ---HHH----HHHHHT-TTGGGGTCCEECCCSSCCCCEECCCCEEE
T ss_pred ---HHH----HHHHHH-hHccCCccCcCHHHHHHHHHHhCCCCEEE
Confidence 222 344442 222222378999999993 3788999986
No 70
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.33 E-value=2.7e-14 Score=110.02 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=71.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCE---ecCh--------hhhcceEEEEeeC-ccCCCCCCHHHHHHHHHhc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGH---ERNL--------SQFRKLSCYIMQD-NQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~---~~~~--------~~~r~~ig~v~q~-~~l~~~ltv~e~l~~~~~~ 70 (127)
|.+|||| |||+++|+|+ ..|+.|.|.++|+ ++.. ..+++.++|++|. ..+++++++.+|+.+.+..
T Consensus 164 G~sGsGK-STLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~ 241 (438)
T 2dpy_A 164 AGSGVGK-SVLLGMMARY-TRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAED 241 (438)
T ss_dssp ECTTSSH-HHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHhcc-cCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999 9999999999 8999999999998 4321 2356789999995 6678889999999876543
Q ss_pred ccCccccHHHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHHH-hcCCce
Q psy1497 71 KLGKDLTKAARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVFN-VLSPLA 123 (127)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~l-~~~P~v 123 (127)
.. . ..+.+. .++ +. ..||+|| ||+++ +.+|++
T Consensus 242 ~~------~-~~~~v~----~~l---------d~l~~lS~g~-qrvslAl~~p~~ 275 (438)
T 2dpy_A 242 FR------D-RGQHVL----LIM---------DSLTRYAMAQ-REIALAIGEPPA 275 (438)
T ss_dssp HH------T-TTCEEE----EEE---------ECHHHHHHHH-HHHHHHTTCCCC
T ss_pred HH------h-CCCCHH----HHH---------HhHHHHHHHH-HHHHHHhCCCcc
Confidence 21 0 011222 222 23 6799999 88876 456654
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.31 E-value=7.2e-14 Score=95.75 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=30.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~ 52 (127)
-|++|||| |||+++|+|+ +. |.++|.+... ...++.+||++|+.
T Consensus 6 ~G~nGsGK-TTLl~~l~g~-l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 6 TGEPGVGK-TTLVKKIVER-LG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred ECCCCCCH-HHHHHHHHHH-hC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 38999999 9999999999 63 5566654311 13467899999975
No 72
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.30 E-value=6.4e-14 Score=103.37 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----h---h--hcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----S---Q--FRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~---~--~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
|++|||| |||+++|+|+ +.|++|+|.+.|.++.. . . .+..++|++|++.++|.+++.+++.++
T Consensus 109 G~nGsGK-TTll~~Lagl-l~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 109 GVNGVGK-TTTIAKLGRY-YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp CSTTSSH-HHHHHHHHHH-HHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcH-HHHHHHHHHH-HHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999 9999999999 89999999999998632 1 1 135699999999999999999998765
No 73
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.29 E-value=1.4e-13 Score=98.11 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=67.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||+++|+|+ + |.+.++ ..++.++|++|+. +++.+|+.+++.+....+.. ..+....
T Consensus 31 ~G~~GsGK-STl~k~L~~~-l----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~ 95 (245)
T 2jeo_A 31 SGGTASGK-STVCEKIMEL-L----GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF-DHPDAFD 95 (245)
T ss_dssp ECSTTSSH-HHHHHHHHHH-H----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT-TSGGGBC
T ss_pred ECCCCCCH-HHHHHHHHHH-h----chhccc-------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCC-CCccccc
Confidence 48999999 9999999998 5 555444 3467899999984 77889999998765432210 0011101
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH---HhcCCceee
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF---NVLSPLATY 125 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~---l~~~P~vl~ 125 (127)
.+.+. +.++.+ .+..+. ..||+||+||++ ++.+|++++
T Consensus 96 ~~~~~----~~L~~l--~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~li 138 (245)
T 2jeo_A 96 NDLMH----RTLKNI--VEGKTVEVPTYDFVTHSRLPETTVVYPADVVL 138 (245)
T ss_dssp HHHHH----HHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred HHHHH----HHHHHH--HCCCCeecccccccccCccCceEEecCCCEEE
Confidence 12233 444433 222333 899999999985 366788766
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.29 E-value=2e-12 Score=107.10 Aligned_cols=37 Identities=22% Similarity=-0.118 Sum_probs=30.1
Q ss_pred HHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcC---Cceee--cC
Q psy1497 91 HFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLS---PLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~---P~vl~--~~ 127 (127)
++++.++|.. ..++ .+|||||||||+ |+.+ |+|++ ||
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP 875 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP 875 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECT
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 8899999986 5566 999999999996 4555 48877 87
No 75
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.28 E-value=5.4e-12 Score=95.64 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCCChHHHHHHHHhCCCCC--------------------------------------CCcceEEECCEecCh---hhh
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS--------------------------------------GTEGSITINGHERNL---SQF 41 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~--------------------------------------~~~G~i~i~G~~~~~---~~~ 41 (127)
|.+|||| |||+++|.++ .. +.+|+++++|++++. ..+
T Consensus 67 G~NGaGK-StLl~aI~~l-~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~ 144 (415)
T 4aby_A 67 GETGAGK-SIIVDALGLL-LGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEW 144 (415)
T ss_dssp ESHHHHH-HHHTHHHHHH-TTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEEEETTEEECHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH-hCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEEEECCEECCHHHHHHH
Confidence 7899999 9999999776 43 447889999999764 223
Q ss_pred c-ceEEEEeeCccCCCCCCHHHH
Q psy1497 42 R-KLSCYIMQDNQLHANLTVEEA 63 (127)
Q Consensus 42 r-~~ig~v~q~~~l~~~ltv~e~ 63 (127)
. ..+++++|...++.. +..+.
T Consensus 145 ~~~~i~~~~q~~~l~l~-~~~~~ 166 (415)
T 4aby_A 145 AQGRLTIHWQHSAVSLL-SPANQ 166 (415)
T ss_dssp HTTTEEEETTTCTTTTS-SHHHH
T ss_pred HhhceEEecCccccccc-CHHHH
Confidence 3 348999998776544 44433
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.27 E-value=1.9e-12 Score=106.35 Aligned_cols=41 Identities=20% Similarity=-0.180 Sum_probs=32.3
Q ss_pred hhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----hcC---Cceee--cC
Q psy1497 83 DVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----VLS---PLATY--EP 127 (127)
Q Consensus 83 ~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~~~---P~vl~--~~ 127 (127)
+++. ++++.++|... .++ .+|||||||||+| +.+ |+|++ ||
T Consensus 708 ~~~~----~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP 760 (842)
T 2vf7_A 708 FRAL----DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEP 760 (842)
T ss_dssp HHHH----HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECT
T ss_pred HHHH----HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 3566 89999999763 455 9999999999964 555 68877 87
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.26 E-value=1.6e-15 Score=105.66 Aligned_cols=106 Identities=6% Similarity=-0.086 Sum_probs=64.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--h-hhhcceEEEEeeCccCCCCCCHHHHHHHHHhccc---Cccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--L-SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL---GKDL 76 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--~-~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~ 76 (127)
|++|||| |||+++|+|+ ++ .|.+++.... . ...++.++|++|++.+|+.+|+.+++........ ..+.
T Consensus 27 GpnGsGK-STLl~~l~gl-~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~ 100 (207)
T 1znw_A 27 GPSAVGK-STVVRCLRER-IP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT 100 (207)
T ss_dssp CSTTSSH-HHHHHHHHHH-ST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred CCCCCCH-HHHHHHHHhh-CC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCC
Confidence 7999999 9999999999 65 3444432211 1 2235679999999888888888777643211100 0123
Q ss_pred cHHHHHhhhccchHHH------HHHhCCCccCCC--CCCCHHHHHHHHHhcCCceee
Q psy1497 77 TKAARKDVFSMRDCHF------LHLSGHLPRGTL--LNLSGLWGIGVFNVLSPLATY 125 (127)
Q Consensus 77 ~~~~~~~~~~~~~~~~------l~~~~l~~~~~~--~~LSgG~rqrv~l~~~P~vl~ 125 (127)
+..+.++++. +. ++.+++....+. ..|| +++.+|++++
T Consensus 101 ~~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~lS-------~l~~~p~~~~ 146 (207)
T 1znw_A 101 LAQPVRAAAA----TGVPVLIEVDLAGARAIKKTMPEAVT-------VFLAPPSWQD 146 (207)
T ss_dssp EHHHHHHHHH----HTCCEEEECCHHHHHHHHHHCTTSEE-------EEEECSCHHH
T ss_pred cHHHHHHHHH----cCCeEEEEeCHHHHHHHHHhcCCcEE-------EEEECCCHHH
Confidence 4444444454 44 455555433333 5566 6777777654
No 78
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.25 E-value=7.2e-15 Score=112.62 Aligned_cols=118 Identities=16% Similarity=0.043 Sum_probs=76.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEe---------eCccC--CCC----CC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIM---------QDNQL--HAN----LT 59 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~---------q~~~l--~~~----lt 59 (127)
-|++|||| |||+++|+|+ +.|++|+|.+.|.++.. ..++..+++.+ |++.+ +.. .|
T Consensus 173 ~GpnGSGK-TTlL~allg~-l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et 250 (418)
T 1p9r_A 173 TGPTGSGK-STTLYAGLQE-LNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLET 250 (418)
T ss_dssp ECSTTSCH-HHHHHHHHHH-HCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHH
T ss_pred ECCCCCCH-HHHHHHHHhh-cCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHH
Confidence 37899999 9999999999 88999999998876531 12334566655 77655 233 58
Q ss_pred HHHHHHHHHhcccC-ccccHHHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHH--HhcCCceeecC
Q psy1497 60 VEEAMNVATALKLG-KDLTKAARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVF--NVLSPLATYEP 127 (127)
Q Consensus 60 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~--l~~~P~vl~~~ 127 (127)
+.+++.++..-+.. ......... .+. ..+..+++.... . .+|||||+||++ ++.+|++.++|
T Consensus 251 ~~~~l~a~~tGhlv~~tlh~~~~~-~~i----~rL~~lgl~~~~-~~~~LSgg~~QRLaraL~~~p~~~~~~ 316 (418)
T 1p9r_A 251 AQIAVQASLTGHLVMSTLHTNTAV-GAV----TRLRDMGIEPFL-ISSSLLGVLAQRLVRTLCPDCKEPYEA 316 (418)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSH-HHH----HHHHHHTCCHHH-HHHHEEEEEEEEEEEEECTTTCEEEEC
T ss_pred HHHHHHHHHhCCCcccccchhhHH-HHH----HHHHHcCCcHHH-HHHHHHHHHHHHhhhhhcCCCCccCCC
Confidence 88888775421100 000000001 122 345667776543 3 889999999974 67899988754
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=8.1e-12 Score=103.34 Aligned_cols=57 Identities=21% Similarity=0.040 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----hcC---Cceee--
Q psy1497 58 LTVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----VLS---PLATY-- 125 (127)
Q Consensus 58 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~~~---P~vl~-- 125 (127)
+||.|++.|.... . ...++. ++|+.+||... .++ .+|||||||||+| +.+ |+|++
T Consensus 767 ~tv~eal~f~~~~------~---~~~~~~----~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD 833 (916)
T 3pih_A 767 MTVDEALEFFKNI------P---SIKRTL----QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD 833 (916)
T ss_dssp SBHHHHHHHTTTC------H---HHHHHH----HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE
T ss_pred CCHHHHHHHHhcc------h---hHHHHH----HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 5677777664321 1 123455 88999999643 344 9999999999965 444 46877
Q ss_pred cC
Q psy1497 126 EP 127 (127)
Q Consensus 126 ~~ 127 (127)
||
T Consensus 834 EP 835 (916)
T 3pih_A 834 EP 835 (916)
T ss_dssp ST
T ss_pred CC
Confidence 87
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.23 E-value=1.1e-14 Score=102.55 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=59.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----hhhcceEEEEeeCccCCCCCCH-HHHHHHHHhccc-Ccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHANLTV-EEAMNVATALKL-GKD 75 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~~~r~~ig~v~q~~~l~~~ltv-~e~l~~~~~~~~-~~~ 75 (127)
-|++|||| |||+++|+|+ + | |+|.+ |.++.. ...+..++|++|++.+|+.++. .+++.+. .+.. ..+
T Consensus 29 vGpsGsGK-STLl~~L~g~-~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~g 101 (218)
T 1z6g_A 29 CGPSGVGK-GTLIKKLLNE-F-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD-NYANNFYG 101 (218)
T ss_dssp ECSTTSSH-HHHHHHHHHH-S-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE-EETTEEEE
T ss_pred ECCCCCCH-HHHHHHHHhh-C-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh-hcccccCC
Confidence 37999999 9999999999 7 5 99999 776422 1235679999998877765431 1111110 0000 002
Q ss_pred ccHHHHHhhhccchHHHHHHhCCCccCCCCCCCHHHHHHHHH
Q psy1497 76 LTKAARKDVFSMRDCHFLHLSGHLPRGTLLNLSGLWGIGVFN 117 (127)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~LSgG~rqrv~l 117 (127)
.+.. .++ ++++...+. ..+ .+|||||+||+++
T Consensus 102 ~~~~----~i~----~~l~~~~~~-il~-~~lsggq~qR~~i 133 (218)
T 1z6g_A 102 TLKS----EYD----KAKEQNKIC-LFE-MNINGVKQLKKST 133 (218)
T ss_dssp EEHH----HHH----HHHHTTCEE-EEE-ECHHHHHHHTTCS
T ss_pred CcHH----HHH----HHHhCCCcE-EEE-ecHHHHHHHHHHh
Confidence 2222 233 445443221 111 6799999999988
No 81
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.23 E-value=5.2e-13 Score=98.15 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=57.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE---CCEecChh--hhc-ceEEEEeeCcc----------------CCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI---NGHERNLS--QFR-KLSCYIMQDNQ----------------LHANLT 59 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i---~G~~~~~~--~~r-~~ig~v~q~~~----------------l~~~lt 59 (127)
-|++|||| |||+|+|+|+ ..|++|+|.+ +|+++... ..+ +.+||++|.+. +||.+|
T Consensus 175 ~G~sG~GK-STll~~l~g~-~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~ 252 (301)
T 1u0l_A 175 AGLSGVGK-SSLLNAINPG-LKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFG 252 (301)
T ss_dssp ECSTTSSH-HHHHHHHSTT-CCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSS
T ss_pred ECCCCCcH-HHHHHHhccc-ccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhcc
Confidence 37899999 9999999999 8999999999 88876431 111 35899999975 578888
Q ss_pred HHHHHHHHHhcccCccccHHHHHhhhccchHHHHHHhCCC-ccCCC--CCCC
Q psy1497 60 VEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLHLSGHL-PRGTL--LNLS 108 (127)
Q Consensus 60 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~--~~LS 108 (127)
+ +|+.|.... ...+...++. ++++.++|. +..+. ..||
T Consensus 253 ~-~n~~~~~~~------~~~e~~~~v~----~~l~~~~L~~~~~~~~~~~ls 293 (301)
T 1u0l_A 253 D-KQCFFSDCN------HVDEPECGVK----EAVENGEIAESRYENYVKMFY 293 (301)
T ss_dssp S-CCCSSTTCC------SSSCSSCHHH----HHHHHTSSCHHHHHHHHHHHH
T ss_pred c-ccCcCCCCc------CCCCCCcHHH----HHHHcCCCCHHHHHHHHHHHH
Confidence 8 888764211 1112234566 899999995 44333 4444
No 82
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.23 E-value=2.2e-15 Score=111.62 Aligned_cols=119 Identities=8% Similarity=0.018 Sum_probs=76.9
Q ss_pred CCCCCChHHHHHHHHhCCCC--------CCCcceEEECCEecCh------------------hhhcceEEEE---eeCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKT--------SGTEGSITINGHERNL------------------SQFRKLSCYI---MQDNQ 53 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~--------~~~~G~i~i~G~~~~~------------------~~~r~~ig~v---~q~~~ 53 (127)
|.+|||| |||+|.|.|+ . .++.|+|.++|..+.. ..++..++++ +|+..
T Consensus 11 G~~GaGK-TTll~~l~~~-~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~ 88 (318)
T 1nij_A 11 GFLGAGK-TTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGN 88 (318)
T ss_dssp ESSSSSC-HHHHHHHHHS-CCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred ecCCCCH-HHHHHHHHhh-cCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCC
Confidence 7899999 9999999998 6 6899999999987532 1234557777 57776
Q ss_pred CCCCCCHHHHHHHHH--hcccCc-cccHHHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 54 LHANLTVEEAMNVAT--ALKLGK-DLTKAARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 54 l~~~ltv~e~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
+++..++.|+..++. .+.... ..........+. .++..+++.+..+. .++|+||+|++. |+.+|+++-
T Consensus 89 ~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~----~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~d 164 (318)
T 1nij_A 89 IQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLD----GVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAG 164 (318)
T ss_dssp CCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEE----EEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTCS
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEEC----CEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccCC
Confidence 666777777765431 000000 001111222344 55666666554444 679999999984 457888775
Q ss_pred cC
Q psy1497 126 EP 127 (127)
Q Consensus 126 ~~ 127 (127)
||
T Consensus 165 e~ 166 (318)
T 1nij_A 165 EA 166 (318)
T ss_dssp CT
T ss_pred HH
Confidence 54
No 83
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.22 E-value=1e-12 Score=88.50 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
-|++|||| |||+|+|+|+ + |++|+|.++|.++....... .+++|++.+| .+|+.|++.+
T Consensus 39 ~G~nGaGK-TTLlr~l~g~-l-~~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 39 NGDLGAGK-TTLTRGMLQG-I-GHQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp ECSTTSSH-HHHHHHHHHH-T-TCCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh-C-CCCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHHHHH
Confidence 48899999 9999999999 8 99999999998763211111 2799999899 8999999865
No 84
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.19 E-value=6e-12 Score=104.49 Aligned_cols=37 Identities=24% Similarity=-0.088 Sum_probs=29.9
Q ss_pred HHHHHhCCCc-cCCC--CCCCHHHHHHHH----HhcC---Cceee--cC
Q psy1497 91 HFLHLSGHLP-RGTL--LNLSGLWGIGVF----NVLS---PLATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~-~~~~--~~LSgG~rqrv~----l~~~---P~vl~--~~ 127 (127)
++++.++|.. ..++ .+|||||||||+ |+.+ |+|++ ||
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP 893 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEP 893 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEEST
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 8899999976 4555 999999999996 4555 48877 87
No 85
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.14 E-value=5.9e-12 Score=100.40 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEEECCEecC------hhhhcceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSITINGHERN------LSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~i~G~~~~------~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
-|++|||| |||+++|+|+ ..| ++|.|+++|.++. ...++..++|++|++.+++.+||.+|+.+...
T Consensus 51 vG~nGsGK-STLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 51 IGDQSSGK-SSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCTTSCH-HHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred ECCCCChH-HHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 48999999 9999999999 778 8999999998842 13467889999999999999999999987643
No 86
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=7.5e-13 Score=97.81 Aligned_cols=104 Identities=9% Similarity=0.005 Sum_probs=55.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEE---CCEecCh-hhh-cceEEEEeeCccCCC----CCCHHHHHHH-HHhc--
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITI---NGHERNL-SQF-RKLSCYIMQDNQLHA----NLTVEEAMNV-ATAL-- 70 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i---~G~~~~~-~~~-r~~ig~v~q~~~l~~----~ltv~e~l~~-~~~~-- 70 (127)
|++|||| |||+|+|+|+ ..++.|+|.+ +|+.... ... +..++|++|.+.+.. .+|+ |++.. +..+
T Consensus 180 G~sG~GK-STLln~L~g~-~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~ 256 (307)
T 1t9h_A 180 GQSGVGK-SSLLNAISPE-LGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIRE 256 (307)
T ss_dssp ESHHHHH-HHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHH
T ss_pred CCCCCCH-HHHHHHhccc-ccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHH
Confidence 7899999 9999999999 8999999998 7876533 122 222799999988765 6889 88832 1111
Q ss_pred -----ccCccccHHHHHhhhccchHHHHHHhCCCccC-CC-CCCCHHHHH
Q psy1497 71 -----KLGKDLTKAARKDVFSMRDCHFLHLSGHLPRG-TL-LNLSGLWGI 113 (127)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~LSgG~rq 113 (127)
+........+....+. ++++.++|.+.. +. .+++.|++|
T Consensus 257 ~~~~C~f~~c~h~~e~~~~v~----~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 257 KSSSCKFRGCLHLKEPKCAVK----QAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp HGGGCSSTTCCSSSCSSCHHH----HHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HhhhccccCCCCccCHHHHHH----HHHHhCCChHHHHHHHHHHHHHHhh
Confidence 1111111112234466 899999997533 22 667777776
No 87
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.11 E-value=5.8e-11 Score=89.26 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-cChhhhcceEEEEe-eCccC--CCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-RNLSQFRKLSCYIM-QDNQL--HANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-~~~~~~r~~ig~v~-q~~~l--~~~ltv~e~l~~~~~~ 70 (127)
-|++|||| |||+++|+|+ ++|++|.|.++|.. +.....+..++|++ |+..+ +...|+++|+..+.+.
T Consensus 181 vG~sGsGK-STll~~l~~~-~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 181 AGETGSGK-TTLMKALMQE-IPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp EESSSSCH-HHHHHHHHTT-SCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred ECCCCCCH-HHHHHHHHhc-CCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 37899999 9999999999 89999999998753 22233567899999 77654 4778999999987653
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.09 E-value=3.8e-11 Score=88.75 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||+++|..+
T Consensus 30 ~G~NGsGK-S~ll~ai~~l 47 (322)
T 1e69_A 30 VGPNGSGK-SNIIDAIKWV 47 (322)
T ss_dssp ECCTTTCS-THHHHHHHHT
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 37899999 9999999854
No 89
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.06 E-value=4.7e-13 Score=91.26 Aligned_cols=94 Identities=7% Similarity=-0.081 Sum_probs=57.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC---cceEEECCEecC------hhhhc-ceEE----EEeeCccCCCCCCHHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGT---EGSITINGHERN------LSQFR-KLSC----YIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~---~G~i~i~G~~~~------~~~~r-~~ig----~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
|.+|||| |||+++|+++ +.|+ .|.|.++|.++. ...+| +.+| +++|+..+|-
T Consensus 9 G~SGsGK-STL~~~L~~~-~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i------------ 74 (171)
T 2f1r_A 9 GTSDSGK-TTLITRMMPI-LRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI------------ 74 (171)
T ss_dssp ESCHHHH-HHHHHHHHHH-HHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE------------
T ss_pred CCCCCCH-HHHHHHHHHH-hhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE------------
Confidence 6899999 9999999999 8887 899999998732 23445 3566 7888766540
Q ss_pred hcccCccccHHHHHhhhccchHHHHHH-hCCCccCCC---CCCCHHHHHHHH----HhcCCce
Q psy1497 69 ALKLGKDLTKAARKDVFSMRDCHFLHL-SGHLPRGTL---LNLSGLWGIGVF----NVLSPLA 123 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~---~~LSgG~rqrv~----l~~~P~v 123 (127)
. .... +....+. ++++. +. -.+. ..||+||+||++ ++.+|++
T Consensus 75 --~---~~~~-~~~a~l~----~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 75 --R---RVSE-EEGNDLD----WIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp --E---ECCH-HHHTCHH----HHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred --e---cCCh-hhhhCHH----HHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 0 0001 1111233 55554 43 1233 569999999996 4567765
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=3.3e-13 Score=92.11 Aligned_cols=110 Identities=5% Similarity=-0.119 Sum_probs=66.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChh-hhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLS-QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~-~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 80 (127)
-|++|||| |||+++|++. ++.|.|.++|.++... ..+..++|++|... +.+++.+++.+........+
T Consensus 15 ~G~~GsGK-STl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~----- 83 (191)
T 1zp6_A 15 SGHPGSGK-STIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEG----- 83 (191)
T ss_dssp EECTTSCH-HHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTS-----
T ss_pred ECCCCCCH-HHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccC-----
Confidence 37899999 9999999997 5789999998764221 11234677777644 45688888876543210000
Q ss_pred HHhhhccchHHHHHHhCCCccC--CC--CCCCHHHHHHHH----HhcCCceeec
Q psy1497 81 RKDVFSMRDCHFLHLSGHLPRG--TL--LNLSGLWGIGVF----NVLSPLATYE 126 (127)
Q Consensus 81 ~~~~~~~~~~~~l~~~~l~~~~--~~--~~LSgG~rqrv~----l~~~P~vl~~ 126 (127)
....++ .++..+++.... +. ..+|+|++|++. ++.+|+++.+
T Consensus 84 ~~~~~~----~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld 133 (191)
T 1zp6_A 84 YFVILD----GVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD 133 (191)
T ss_dssp CEEEEC----SCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC
T ss_pred CeEEEe----ccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCC
Confidence 001122 222222222211 22 679999999985 4567877653
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.02 E-value=1.7e-12 Score=90.06 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=62.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCC--CCCCHHHHHHHHHhcccCccccHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH--ANLTVEEAMNVATALKLGKDLTKA 79 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~ 79 (127)
-|++|||| |||+++|+|+ +.| .++|++|+..++ +.+++.++..+.... +..
T Consensus 12 ~G~~GsGK-STl~~~l~~~-~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~------~~~ 64 (211)
T 3asz_A 12 AGGTASGK-TTLAQALART-LGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNYDH------PDA 64 (211)
T ss_dssp EESTTSSH-HHHHHHHHHH-HGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS------GGG
T ss_pred ECCCCCCH-HHHHHHHHHH-hCC-------------------CeEEEecCccccCcccccHHHhcCCCCCC------hhh
Confidence 37899999 9999999998 653 589999998776 567998887653211 111
Q ss_pred HHHhhhccchHHHHHHhCCCccCCC--CCCCHHHH----HHHH----HhcCCceee
Q psy1497 80 ARKDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWG----IGVF----NVLSPLATY 125 (127)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~r----qrv~----l~~~P~vl~ 125 (127)
...+.+. ++++.+++.+..+. .++|+|++ |+++ ++.+|.+++
T Consensus 65 ~~~~~~~----~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~ 116 (211)
T 3asz_A 65 FDLALYL----EHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVL 116 (211)
T ss_dssp BCHHHHH----HHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTT
T ss_pred hhHHHHH----HHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhc
Confidence 1123445 66777777554433 77899975 4443 456666665
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.02 E-value=4.4e-13 Score=98.62 Aligned_cols=64 Identities=11% Similarity=-0.009 Sum_probs=30.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
|.+|||| |||+++|+|....|++| |.++|.++........+++++|...++..+|++|+.-++.
T Consensus 25 G~nG~GK-STLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 25 GESGLGK-STLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EETTSSH-HHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCCCCCH-HHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 7899999 99999999863468889 8888877643222356899999988888889988876643
No 93
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.94 E-value=9.5e-11 Score=91.37 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=54.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hh--hcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQ--FRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~--~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
-|.+|||| |||+++|+|+ +.+++|+|.+.|.+... .. .+..++|++|...+++.+++++|+.++.
T Consensus 299 VGpNGSGK-TTLl~~LAgl-l~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 299 VGVNGVGK-TTTIGKLARQ-FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred ECCCcccH-HHHHHHHHHH-hhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 47899999 9999999999 88999999998777532 11 3567999999998889999999998874
No 94
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.88 E-value=2.4e-10 Score=85.07 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=54.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----h---hh--cceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----S---QF--RKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----~---~~--r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
-|++|||| |||+++|+|+ +.|++|+|.+.|.++.. . .+ +..+.+++|...++|.+++++|+.++.
T Consensus 135 vG~nGaGK-TTll~~Lag~-l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 135 VGFNGSGK-TTTIAKLANW-LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-HHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 37899999 9999999999 89999999999998632 1 11 234669999999999999999998764
No 95
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.88 E-value=2.5e-10 Score=77.16 Aligned_cols=32 Identities=16% Similarity=-0.074 Sum_probs=23.2
Q ss_pred hCCCccCCC-CCCCHHHHHHHH----HhcCCceee--cC
Q psy1497 96 SGHLPRGTL-LNLSGLWGIGVF----NVLSPLATY--EP 127 (127)
Q Consensus 96 ~~l~~~~~~-~~LSgG~rqrv~----l~~~P~vl~--~~ 127 (127)
.+.....+. ...|+|||||++ ++.+|++|+ ||
T Consensus 72 ~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 72 LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 344444444 667999999996 467999988 77
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=2.7e-11 Score=89.90 Aligned_cols=109 Identities=14% Similarity=-0.043 Sum_probs=63.6
Q ss_pred CCCCCCChHHHHHHHHhCCCC----CCCcceEEECCEecCh--hh-hcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT----SGTEGSITINGHERNL--SQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~----~~~~G~i~i~G~~~~~--~~-~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 74 (127)
-|++|+|| |||+++|++. . .+++|.+..++.++.. .. .+..+.+++|.+.+++ ++.|++..........
T Consensus 57 ~Gp~G~GK-TTLa~~ia~~-l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~ 132 (334)
T 1in4_A 57 AGPPGLGK-TTLAHIIASE-LQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQID 132 (334)
T ss_dssp ESSTTSSH-HHHHHHHHHH-HTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCC
T ss_pred ECCCCCcH-HHHHHHHHHH-hCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccc
Confidence 38999999 9999999998 6 5677877766655421 11 2457999999888876 7888775433221000
Q ss_pred -cccHHHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHHHh
Q psy1497 75 -DLTKAARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVFNV 118 (127)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~l~ 118 (127)
........+.+. ..+..+++...... ..||+|++||+.++
T Consensus 133 i~~~~~~~~~~i~----~~l~~~~li~at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 133 IMIGKGPSAKSIR----IDIQPFTLVGATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp C-------------------CCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred eeeccCccccccc----ccCCCeEEEEecCCcccCCHHHHHhcCce
Confidence 000112223344 55555655432233 88999999998643
No 97
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.84 E-value=1.1e-11 Score=87.42 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC--CcceEEECCEecChhhhcceEEEEeeCccCCCCCCH----HHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV----EEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~--~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv----~e~l~~ 66 (127)
-|++|||| |||+++|+|+ .+| ..|.|.+.+++... ..+..++|+||++..|+.+++ .|++.+
T Consensus 22 ~GpsGsGK-STLlk~L~g~-~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 22 SAPSGAGK-SSLIQALLKT-QPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ECCTTSCH-HHHHHHHHHH-SCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ECCCCCCH-HHHHHHHhcc-CCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 38999999 9999999999 775 78999888866432 235679999999888887777 555544
No 98
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.82 E-value=4.9e-10 Score=82.41 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--CCcceEEE---CCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--GTEGSITI---NGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~~~G~i~i---~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 70 (127)
-|++|||| |||+++|+|+ +. |++|+|.+ +|..... ..++.++++ |...+++.+++.+++.+...+
T Consensus 86 ~G~~GsGK-STl~~~L~~~-l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 86 AGSVAVGK-STTARVLQAL-LSRWPEHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp EECTTSSH-HHHHHHHHHH-HTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhCCCCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 37899999 9999999998 77 89999999 8876543 234568888 888888899999999876544
No 99
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.72 E-value=2.1e-09 Score=76.16 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-----------hhhcceEEEEeeC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-----------SQFRKLSCYIMQD 51 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-----------~~~r~~ig~v~q~ 51 (127)
|++|||| |||+++|+|+ +.|++|+|.++|.++.. ..++..++|++|+
T Consensus 34 GpnGsGK-STll~~i~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 34 GGNGAGK-STTMAAFVTA-LIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp SCCSHHH-HHHHHHHHHH-HSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred CCCCCCH-HHHHHHHhcc-cccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 7999999 9999999999 89999999999987621 1235679999975
No 100
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.69 E-value=1.7e-08 Score=74.98 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=48.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec-ChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER-NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~-~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
-|++|||| |||+++|+|+ ++|++|.|.++|.+. .....++.++++++ ...+.+.++..+..
T Consensus 177 ~G~~GsGK-TTll~~l~g~-~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 177 CGGTGSGK-TTYIKSIMEF-IPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLKSCLR 238 (330)
T ss_dssp EESTTSCH-HHHHHHGGGG-SCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHHHHHTT
T ss_pred ECCCCCCH-HHHHHHHhCC-CcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHHHHHHhh
Confidence 37899999 9999999999 899999999998752 22334667888876 56788888877654
No 101
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.67 E-value=5.2e-08 Score=73.26 Aligned_cols=23 Identities=22% Similarity=-0.156 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHH----h------cCCceee--cC
Q psy1497 105 LNLSGLWGIGVFN----V------LSPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l----~------~~P~vl~--~~ 127 (127)
.+||||||||++| + .+|++|+ ||
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEp 312 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEG 312 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCC
Confidence 7899999999964 4 5999988 87
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.62 E-value=2.6e-10 Score=85.37 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCCCCCChHHHHHHHHhCCCC--CCCc----ce-EEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT--SGTE----GS-ITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~--~~~~----G~-i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
-|++|||| |||++++++. . +|++ |. |+|++.+.. .+.++++++|...+++. ++.+|+.+
T Consensus 137 ~G~~GsGK-TTL~~~l~~~-~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni~~ 202 (349)
T 1pzn_A 137 FGEFGSGK-TQLAHTLAVM-VQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYV 202 (349)
T ss_dssp EESTTSSH-HHHHHHHHHH-TTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGEEE
T ss_pred ECCCCCCH-HHHHHHHHHH-hccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCEEE
Confidence 37899999 9999999998 6 5565 67 889887642 13457888888877765 77777654
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.60 E-value=2.1e-09 Score=78.14 Aligned_cols=105 Identities=6% Similarity=-0.063 Sum_probs=59.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc-eEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG-SITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G-~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
|.+|||| |||+++|+|. ..+.+| .|.+.+.+.....+++++.++.+...+ ++.+++.... ....+.
T Consensus 42 G~~G~GK-TTl~~~ia~~-~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~-------~~~~~~ 108 (296)
T 1cr0_A 42 SGSGMGK-STFVRQQALQ-WGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI-------IENGKF 108 (296)
T ss_dssp ESTTSSH-HHHHHHHHHH-HHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH-------HHHTHH
T ss_pred eCCCCCH-HHHHHHHHHH-HHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC-------CCHHHH
Confidence 7899999 9999999999 788877 786655454444444444444433221 2223332221 111222
Q ss_pred HhhhccchHHHHHHhCCCccCCC-CCCCHHH-HHHH---HHhcCCceee
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL-LNLSGLW-GIGV---FNVLSPLATY 125 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~-rqrv---~l~~~P~vl~ 125 (127)
.+.+. ++++..++. ..+. .++|.++ +|++ +++.+|++|+
T Consensus 109 ~~~~~----~~l~~~~l~-i~~~~~~~~~~~l~~~~~a~~~~~~p~lli 152 (296)
T 1cr0_A 109 DQWFD----ELFGNDTFH-LYDSFAEAETDRLLAKLAYMRSGLGCDVII 152 (296)
T ss_dssp HHHHH----HHHSSSCEE-EECCCCSCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHH----HHhccCCEE-EECCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 23344 544433331 1223 5688888 5555 2678999887
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=4.6e-09 Score=72.40 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-hhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-SQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~ 52 (127)
-|.+|||| |||+++|+|+ +. ++| |.++|.+... ...++.+||++|+.
T Consensus 7 ~G~nG~GK-TTll~~l~g~-~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 7 TGPPGVGK-TTLIHKASEV-LK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp ESCCSSCH-HHHHHHHHHH-HH-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred ECCCCChH-HHHHHHHHhh-cc-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 47899999 9999999999 78 899 9999987632 34577899999974
No 105
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.59 E-value=3.6e-08 Score=73.79 Aligned_cols=47 Identities=15% Similarity=0.037 Sum_probs=36.6
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh----------hhhcceEEEEeeC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL----------SQFRKLSCYIMQD 51 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~----------~~~r~~ig~v~q~ 51 (127)
|.+|||| |||+++|+|+ ..|+.|.|.+.|++... ..+++.+.+++|.
T Consensus 78 G~nGaGK-TTLl~~I~g~-~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 78 AGSGVGK-STLLGMICNG-ASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp ECTTSSH-HHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCCCCCH-HHHHHHHhcC-CCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 6899999 9999999999 89999999998875211 1234557777764
No 106
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=3e-09 Score=72.96 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCccCCCCCCHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEAM 64 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~l~~~ltv~e~l 64 (127)
-|++|||| |||+++|+|+ .+ .+.+.+..... ...+..++|++|++..|+.+++.+++
T Consensus 13 ~Gp~GsGK-STl~~~L~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 13 SAPSGAGK-TSLVRALVKA-LA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ECCTTSCH-HHHHHHHHHH-SS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred ECcCCCCH-HHHHHHHHhh-CC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 38999999 9999999999 63 57787766432 22356789999998877776665544
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.50 E-value=5.1e-09 Score=78.04 Aligned_cols=54 Identities=6% Similarity=0.009 Sum_probs=45.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhhcceEEEEeeCccCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDNQLHAN 57 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~r~~ig~v~q~~~l~~~ 57 (127)
-|.+|||| |||+++|+|+ +.|++|+|.+.|.+... ...+..+++++|++++|+.
T Consensus 61 ~G~~GaGK-STLl~~l~g~-~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 61 TGVPGVGK-STTIDALGSL-LTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred ECCCCCCH-HHHHHHHHHh-hhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 37899999 9999999999 88999999999988632 1245679999999888764
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.48 E-value=7.8e-08 Score=69.33 Aligned_cols=100 Identities=10% Similarity=-0.045 Sum_probs=59.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|++|||| |||++.+++. .. .|.+ +.|.+... ...+.|+..+.... .+.+.+. .+.. ....
T Consensus 36 ~G~~GsGK-Ttl~~~l~~~-~~--~g~~-~~g~~~~~---~~~v~~~~~e~~~~---~~~~r~~---~~g~--~~~~--- 96 (279)
T 1nlf_A 36 VSPGGAGK-SMLALQLAAQ-IA--GGPD-LLEVGELP---TGPVIYLPAEDPPT---AIHHRLH---ALGA--HLSA--- 96 (279)
T ss_dssp EESTTSSH-HHHHHHHHHH-HH--TCCC-TTCCCCCC---CCCEEEEESSSCHH---HHHHHHH---HHHT--TSCH---
T ss_pred EcCCCCCH-HHHHHHHHHH-Hh--cCCC-cCCCccCC---CccEEEEECCCCHH---HHHHHHH---HHHh--hcCh---
Confidence 37899999 9999999986 43 4665 33544311 23567776544220 1111111 1110 1111
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHH-HHhcCCceee
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGV-FNVLSPLATY 125 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv-~l~~~P~vl~ 125 (127)
.... ++++.+++.+..+. ..||+|+.+++ +++.+|++|+
T Consensus 97 -~~~~----~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~liv 138 (279)
T 1nlf_A 97 -EERQ----AVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMV 138 (279)
T ss_dssp -HHHH----HHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEE
T ss_pred -hhhh----hccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEE
Confidence 1234 66777777665555 89999999988 5778999877
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.48 E-value=3.3e-09 Score=77.62 Aligned_cols=103 Identities=11% Similarity=-0.141 Sum_probs=61.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh----cccCcccc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA----LKLGKDLT 77 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~----~~~~~~~~ 77 (127)
-|++|||| |||.+.|.++ +.+. | . -++.+.+|+|+..+++. +.++|+.+... +.. .+.+
T Consensus 37 ~G~sGsGK-STla~~L~~~-l~~~-g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~-~g~p 99 (290)
T 1odf_A 37 SGPQGSGK-SFTSIQIYNH-LMEK-Y------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQG-RGLP 99 (290)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHHH-H------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSS-SCST
T ss_pred ECCCCCCH-HHHHHHHHHH-hhhc-C------C------CCceEEEeccccccCCh-HHHHHHhccccccchhhh-ccCc
Confidence 47899999 9999999999 6542 2 0 13445666999888876 88888877521 110 0111
Q ss_pred HHHHHhhhccchHHHHHHhCCC------c--cCCC--CCCCHHHHHHHHH----hcCCceee
Q psy1497 78 KAARKDVFSMRDCHFLHLSGHL------P--RGTL--LNLSGLWGIGVFN----VLSPLATY 125 (127)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~l~------~--~~~~--~~LSgG~rqrv~l----~~~P~vl~ 125 (127)
.....+.+. +.++.+.-. . .... ..+||||+||+++ +.+|+|||
T Consensus 100 ~a~d~~~l~----~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlI 157 (290)
T 1odf_A 100 GTHDMKLLQ----EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFI 157 (290)
T ss_dssp TSBCHHHHH----HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEE
T ss_pred chhHHHHHH----HHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEE
Confidence 111112333 555555332 1 1122 8899999998743 22788876
No 110
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.47 E-value=8.7e-11 Score=85.23 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc-cCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN-QLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~-~l~~~ltv~e~l~~ 66 (127)
-|++|||| |||+++|+|. ..+ +.|.++|.++.. ....+.+++++|.. ..+|.+++.+++..
T Consensus 50 ~Gp~GtGK-TtLakala~~-~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 50 AGPPGCGK-TLLAKAVANE-SGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp ESSTTSCH-HHHHHHHHHH-TTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred ECCCCCcH-HHHHHHHHHH-cCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 48999999 9999999998 665 789999877532 22345677888764 55666666666654
No 111
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.46 E-value=2.4e-07 Score=72.53 Aligned_cols=86 Identities=7% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCccccHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 81 (127)
-|.+|||| |||+++++|. ..+. |+ +.+.+++|++. .++.++. ..+ ++.
T Consensus 287 ~G~~GsGK-STLl~~l~g~-~~~~-G~--------------~vi~~~~ee~~----~~l~~~~---~~~----g~~---- 334 (525)
T 1tf7_A 287 TGATGTGK-TLLVSRFVEN-ACAN-KE--------------RAILFAYEESR----AQLLRNA---YSW----GMD---- 334 (525)
T ss_dssp EECTTSSH-HHHHHHHHHH-HHTT-TC--------------CEEEEESSSCH----HHHHHHH---HTT----SCC----
T ss_pred EeCCCCCH-HHHHHHHHHH-HHhC-CC--------------CEEEEEEeCCH----HHHHHHH---HHc----CCC----
Confidence 37899999 9999999999 6664 43 11344555431 0122221 111 121
Q ss_pred HhhhccchHHHHHHhCCCccCCC--CCCCHHHHHHHH----HhcCCceee-cC
Q psy1497 82 KDVFSMRDCHFLHLSGHLPRGTL--LNLSGLWGIGVF----NVLSPLATY-EP 127 (127)
Q Consensus 82 ~~~~~~~~~~~l~~~~l~~~~~~--~~LSgG~rqrv~----l~~~P~vl~-~~ 127 (127)
++ + +...|+....+. .+||+||+||++ ++.+|++|+ ||
T Consensus 335 ---~~----~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 335 ---FE----E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp ---HH----H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ---HH----H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 11 2 223444444444 889999999996 457999876 54
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.44 E-value=2.2e-09 Score=76.17 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHh---CCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSG---RIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~---gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
-|++|||| |||+++|+ |+ ..++.|+|.++|.+.. ......+.+++|+..+++..++.+++...
T Consensus 33 ~G~~GsGK-STl~k~La~~lg~-~~~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 33 LGPPGSGK-GTVCQRIAQNFGL-QHLSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp ECCTTSSH-HHHHHHHHHHHCC-CCEEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHHhCC-eEecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 37899999 99999999 99 7899999988765432 12233456677888888888999998764
No 113
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.42 E-value=9.2e-08 Score=79.36 Aligned_cols=93 Identities=19% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHhcccCc--ccc-H--HHHHhhhccc
Q psy1497 14 LQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK--DLT-K--AARKDVFSMR 88 (127)
Q Consensus 14 l~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~~~~~~--~~~-~--~~~~~~~~~~ 88 (127)
..|..+. +.|..++|+|+|+++.. +..+++.+++.+...+.... ... . ....+...
T Consensus 385 ~~C~g~r-l~~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 445 (916)
T 3pih_A 385 SVCGGRR-LNREALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL-- 445 (916)
T ss_dssp TTTCSCC-BCTTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH--
T ss_pred hhccccc-CChHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH--
Confidence 3455566 78999999999998632 23346666665543221110 000 0 01112234
Q ss_pred hHHHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCc--eee--cC
Q psy1497 89 DCHFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPL--ATY--EP 127 (127)
Q Consensus 89 ~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~--vl~--~~ 127 (127)
+++..+||... .++ .+|||||+|||+ |+.+|+ +++ ||
T Consensus 446 --~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEP 493 (916)
T 3pih_A 446 --EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEP 493 (916)
T ss_dssp --HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECT
T ss_pred --HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECC
Confidence 67888999754 466 999999999996 466676 766 87
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.39 E-value=9.4e-09 Score=78.91 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
|.+|||| |||+|+|+|+ . ++|.++ .....+..++|++|++.+++.+|+.+|+.++.
T Consensus 49 G~nGaGK-STLln~L~G~-~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 49 GETGLGK-STLMDTLFNT-K--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp CSTTSSS-HHHHHHHHTS-C--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred CCCCCCH-HHHHHHHhCc-c--------ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 7899999 9999999998 3 223222 12223457999999999998999999886653
No 115
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.37 E-value=3.4e-08 Score=80.63 Aligned_cols=52 Identities=8% Similarity=-0.019 Sum_probs=33.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
-|++|||| |||+|+++|+ .. +..|.+. . ..+..+++++| +++.+++.+|+..
T Consensus 582 ~GpNGsGK-STlLr~iagl-~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 582 TGPNMAGK-STFLRQTALI-ALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp ESCSSSSH-HHHHHHHHHH-HHHHTTTCCB------S--SSEEEECCCSE---EEEECCC------
T ss_pred ECCCCCCh-HHHHHHHHhh-hhhcccCcee------e--hhccceeeHHH---hhccCCHHHHHHh
Confidence 48999999 9999999998 53 6777642 1 12356888876 5667777777654
No 116
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.37 E-value=4.5e-08 Score=76.22 Aligned_cols=33 Identities=3% Similarity=-0.125 Sum_probs=30.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-|++|||| |||+++|+|+ ++|++|+|.++|+++
T Consensus 35 iG~nGsGK-STLl~~l~Gl-~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 35 SGGNGAGK-STTMAGFVTA-LIPDLTLLNFRNTTE 67 (483)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HCCCTTTCCCCCTTS
T ss_pred ECCCCCcH-HHHHHHHhcC-CCCCCCEEEECCEEc
Confidence 48999999 9999999999 899999999999875
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.32 E-value=6.8e-07 Score=70.03 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=34.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe-cChhhhcceEEEEeeC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE-RNLSQFRKLSCYIMQD 51 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~-~~~~~~r~~ig~v~q~ 51 (127)
|++|||| |||+++|+|+ ++|++|.|.+.|.. +.... ...++++.+.
T Consensus 267 GptGSGK-TTlL~aL~~~-i~~~~giitied~~E~~~~~-~~~v~~~~r~ 313 (511)
T 2oap_1 267 GETASGK-TTTLNAIMMF-IPPDAKVVSIEDTREIKLYH-ENWIAEVTRT 313 (511)
T ss_dssp ESTTSSH-HHHHHHHGGG-SCTTCCEEEEESSCCCCCCC-SSEEEEECBC
T ss_pred CCCCCCH-HHHHHHHHhh-CCCCCCEEEEcCcccccCCC-CCeEEEEeec
Confidence 7899999 9999999999 89999999998865 32211 2345555544
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.32 E-value=3.6e-08 Score=74.34 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=37.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-cceEEECCEecChhhhcceEEEEee
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-EGSITINGHERNLSQFRKLSCYIMQ 50 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-~G~i~i~G~~~~~~~~r~~ig~v~q 50 (127)
-|++|||| |||+++|+|+ +.|+ +|+|.+.+.++.. ..+..+++|+|
T Consensus 142 vG~~GsGK-TTll~~l~~~-~~~~~~g~I~~~e~~~e~-~~~~~~~~v~Q 188 (372)
T 2ewv_A 142 TGPTGSGK-STTIASMIDY-INQTKSYHIITIEDPIEY-VFKHKKSIVNQ 188 (372)
T ss_dssp ECSSSSSH-HHHHHHHHHH-HHHHSCCEEEEEESSCCS-CCCCSSSEEEE
T ss_pred ECCCCCCH-HHHHHHHHhh-cCcCCCcEEEEecccHhh-hhccCceEEEe
Confidence 37899999 9999999999 7887 8999776655432 34567899999
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.30 E-value=1.5e-08 Score=69.78 Aligned_cols=60 Identities=12% Similarity=-0.101 Sum_probs=46.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChh--hhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLS--QFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~--~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
-|.+|||| |||+++|++. + |.+.++|.++... ..+..+++++|+...++.+++.+++...
T Consensus 35 ~G~~GsGK-STl~~~L~~~-~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 35 MGVSGSGK-TTIAHGVADE-T----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ECCTTSCH-HHHHHHHHHH-H----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh-h----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 37899999 9999999998 5 8899998776431 1223568899988888888888887654
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.29 E-value=4.4e-09 Score=72.20 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=17.3
Q ss_pred CCCCCChHHHHHHHHhCCCC-----CCCcceEEE
Q psy1497 3 KNFGSDIDKYLLQTSGRIKT-----SGTEGSITI 31 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~-----~~~~G~i~i 31 (127)
|.+|||| |||++.|+|. . .|+.|++.+
T Consensus 33 G~~g~GK-STLl~~l~g~-~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 33 GRSNAGK-SSALNTLTNQ-KSLARTSKTPGRTQL 64 (210)
T ss_dssp ECTTSSH-HHHHTTTCCC--------------CC
T ss_pred CCCCCCH-HHHHHHHhCC-CccccccCCCcccee
Confidence 7899999 9999999998 6 678887764
No 121
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.29 E-value=2.7e-08 Score=77.95 Aligned_cols=50 Identities=8% Similarity=-0.063 Sum_probs=40.5
Q ss_pred CCCCCCChHHHHHHH--HhCCCCCCCcceEEECCEecCh--hhhcceEEEEeeCcc
Q psy1497 2 RKNFGSDIDKYLLQT--SGRIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQ 53 (127)
Q Consensus 2 ~~~~GsGK~STLl~~--l~gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~ 53 (127)
-|++|||| |||+++ ++|+ .+|++|.|+++|.+... ...++.+||++|++.
T Consensus 45 ~G~nGsGK-STL~~~~ll~Gl-~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 45 SGTSGTGK-TLFSIQFLYNGI-IEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EESTTSSH-HHHHHHHHHHHH-HHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 37899999 999999 7899 78899999999987422 234467899999855
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.28 E-value=2.4e-08 Score=67.85 Aligned_cols=59 Identities=12% Similarity=-0.077 Sum_probs=42.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
-|++|||| |||+++|++ +.+|.++++|.++.. ...+++++|....++..++++++.+..
T Consensus 8 ~G~~GaGK-STl~~~L~~----~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 8 TGPAGVGK-STTCKRLAA----QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLT 66 (189)
T ss_dssp ECSTTSSH-HHHHHHHHH----HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHhc----ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHH
Confidence 37899999 999999986 357889998865421 123567777665556668888877654
No 123
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.25 E-value=1.5e-09 Score=78.38 Aligned_cols=61 Identities=8% Similarity=-0.045 Sum_probs=44.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCcc-CCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ-LHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~~-l~~~ltv~e~l~~ 66 (127)
-|++|||| |||+++|++. .. .|.|.+++.++.. ...+..+++++|... ..+.+++.|++..
T Consensus 79 ~Gp~GtGK-Ttl~~~i~~~-~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 79 VGPPGVGK-THLARAVAGE-AR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp ECCTTSSH-HHHHHHHHHH-TT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred ECCCcChH-HHHHHHHHHH-cC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHh
Confidence 37999999 9999999998 54 7889998866421 222345677787753 5667777777754
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.24 E-value=2.2e-08 Score=69.51 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=41.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCC-------CcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG-------TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~-------~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
|++|||| |||+++|+|. ..+ ..+.|++++.+... ...+++++|...+++. ++.+|+.+.
T Consensus 32 G~nGsGK-STll~~l~g~-~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 32 GEFGSGK-TQLAHTLAVM-VQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp ESTTSSH-HHHHHHHHHH-TTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCH-HHHHHHHHHH-HhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 7899999 9999999995 343 34477777765211 2346677787777766 788886553
No 125
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.20 E-value=9.5e-08 Score=68.20 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=40.7
Q ss_pred CCCCCCChHHHHHHHHh---CCCCCCCcceEE--------ECCEecC----hhhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSG---RIKTSGTEGSIT--------INGHERN----LSQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~---gl~~~~~~G~i~--------i~G~~~~----~~~~r~~ig~v~q~~ 52 (127)
-|.+|||| ||++++|+ |+ ..+++|.|. .+|.++. ...++..+++++|..
T Consensus 33 ~G~~GsGK-STl~k~La~~Lg~-~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 33 DGPSGAGK-GTLCKALAESLNW-RLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp ECCTTSSH-HHHHHHHHHHTTC-EEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred ECCCCCCH-HHHHHHHHHhcCC-CcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 37899999 99999999 99 789999999 8888763 245667899999753
No 126
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.19 E-value=1.2e-07 Score=68.23 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=35.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-cceEEECCEecChhhhcceEEEEee
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-EGSITINGHERNLSQFRKLSCYIMQ 50 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-~G~i~i~G~~~~~~~~r~~ig~v~q 50 (127)
-|++|||| |||+++|+|+ +.|+ +|+|.++|.++... .+..+++++|
T Consensus 31 ~Gp~GsGK-STll~~l~g~-~~~~~~G~I~~~g~~i~~~-~~~~~~~v~q 77 (261)
T 2eyu_A 31 TGPTGSGK-STTIASMIDY-INQTKSYHIITIEDPIEYV-FKHKKSIVNQ 77 (261)
T ss_dssp ECSTTCSH-HHHHHHHHHH-HHHHCCCEEEEEESSCCSC-CCCSSSEEEE
T ss_pred ECCCCccH-HHHHHHHHHh-CCCCCCCEEEEcCCcceee-cCCcceeeeH
Confidence 37899999 9999999999 8887 99999998775321 1233566776
No 127
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.16 E-value=2.1e-09 Score=76.43 Aligned_cols=61 Identities=8% Similarity=-0.045 Sum_probs=43.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh---hhhcceEEEEeeCc-cCCCCCCHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL---SQFRKLSCYIMQDN-QLHANLTVEEAMNV 66 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~---~~~r~~ig~v~q~~-~l~~~ltv~e~l~~ 66 (127)
-|++|||| |||+++|++. .. .|.|.+++.++.. ...++.+++++|.. ...+.+++.+++..
T Consensus 55 ~G~~G~GK-Ttl~~~i~~~-~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 55 VGPPGVGK-THLARAVAGE-AR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119 (254)
T ss_dssp ECCTTSSH-HHHHHHHHHH-TT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-hC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 38999999 9999999998 54 7889988766421 22234566777764 35566777777743
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.14 E-value=1.3e-07 Score=72.40 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=35.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC--hhhhcceEEEEeeCccCCCCCCHHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN--LSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~--~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~ 68 (127)
|.+|||| |||+++|+|. ..++.| .+|..+. .......+++++|...+++.+|+++++.++.
T Consensus 38 G~sGaGK-STLln~L~g~-~~~~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 38 GESGLGK-STLINSLFLT-DLYSPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCTTSSH-HHHHHHHTTC-CCCCCC---CCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCCCCcH-HHHHHHHhCC-CCCCCC---CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 7899999 9999999999 665444 1222221 1112356899999988888889998887654
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.13 E-value=2.1e-08 Score=70.45 Aligned_cols=59 Identities=7% Similarity=-0.019 Sum_probs=39.4
Q ss_pred CCCCCCChHHHHHHHHh--CCCCCCCcceEEECCEecCh--hhhcceEEEEeeCccCCCCCCHHH
Q psy1497 2 RKNFGSDIDKYLLQTSG--RIKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHANLTVEE 62 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~--gl~~~~~~G~i~i~G~~~~~--~~~r~~ig~v~q~~~l~~~ltv~e 62 (127)
-|++|||| |||+++|+ |+ ..+.+|.+.+++.+... ....+.+++++|+...++.+++.+
T Consensus 36 ~GpnGsGK-STLl~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 98 (251)
T 2ehv_A 36 TGGTGTGK-TTFAAQFIYKGA-EEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVD 98 (251)
T ss_dssp ECCTTSSH-HHHHHHHHHHHH-HHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC
T ss_pred EeCCCCCH-HHHHHHHHHHHH-HhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEE
Confidence 37899999 99999999 65 46677888887755322 223345778777654444444433
No 130
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.07 E-value=7.1e-07 Score=66.99 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC-cceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT-EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 69 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~-~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~~~ 69 (127)
-|++|||| |||+++|+|+ +.++ +|.|...+.++.. ..+...++++|.......++..+.+.-...
T Consensus 129 ~GptGSGK-TTlL~~l~g~-~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 129 TGPTGSGK-STTLAAMLDY-LNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp ECSTTSCH-HHHHHHHHHH-HHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred ECCCCCCH-HHHHHHHHhc-ccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHHHHHHHhh
Confidence 37899999 9999999999 7776 5666544333321 223445678887665566788887665543
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.06 E-value=1.7e-06 Score=66.15 Aligned_cols=95 Identities=12% Similarity=-0.080 Sum_probs=54.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeC----------ccCCCCCCHHHHHHHHHhccc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQD----------NQLHANLTVEEAMNVATALKL 72 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~----------~~l~~~ltv~e~l~~~~~~~~ 72 (127)
|.+|||| |||+++|++. .+ .+.+.+.. .....++++.++ +.+.... .++ .
T Consensus 164 G~~gAGK-STLL~~Lsg~-~~------~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~DtpGli~~a--~~~-------~- 223 (416)
T 1udx_A 164 GYPNAGK-SSLLAAMTRA-HP------KIAPYPFT--TLSPNLGVVEVSEEERFTLADIPGIIEGA--SEG-------K- 223 (416)
T ss_dssp CCGGGCH-HHHHHHHCSS-CC------EECCCTTC--SSCCEEEEEECSSSCEEEEEECCCCCCCG--GGS-------C-
T ss_pred CCCCCcH-HHHHHHHHcC-Cc------cccCcccc--eecceeeEEEecCcceEEEEeccccccch--hhh-------h-
Confidence 6899999 9999999998 33 23332221 122345555443 2222210 000 0
Q ss_pred CccccH--HHHHhhhccchHHHHHHhCCCccCCC-CCCCHHHHHHHH----HhcCCceee
Q psy1497 73 GKDLTK--AARKDVFSMRDCHFLHLSGHLPRGTL-LNLSGLWGIGVF----NVLSPLATY 125 (127)
Q Consensus 73 ~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~LSgG~rqrv~----l~~~P~vl~ 125 (127)
.+.. ....++++ .++..+++. .+. .+||+|++|+++ ++..|.||+
T Consensus 224 --~L~~~fl~~~era~----~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 224 --GLGLEFLRHIARTR----VLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp --CSCHHHHHHHTSSS----EEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred --hhhHHHHHHHHHHH----hhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 1111 11223455 667777775 223 889999999986 467998876
No 132
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.91 E-value=2e-05 Score=65.68 Aligned_cols=63 Identities=24% Similarity=0.136 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHhcccCccccH----------HHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH----h
Q psy1497 56 ANLTVEEAMNVATALKLGKDLTK----------AARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN----V 118 (127)
Q Consensus 56 ~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l----~ 118 (127)
..+||.|++.|...+. ++. .++.+++ ++|..+||... +++ .+|||||+|||+| +
T Consensus 450 ~~ltV~e~~~f~e~l~----l~~~~~~i~~~~~~ei~~Rl-----~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE----LTEKEAQIARLILREIRDRL-----GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG 520 (972)
T ss_dssp HTSBHHHHHHHHHHCC----CCHHHHHHSHHHHHHHHHHH-----HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-----HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHh
Confidence 4689999999976553 222 1222232 35789999754 566 9999999999964 5
Q ss_pred cC--Cceee--cC
Q psy1497 119 LS--PLATY--EP 127 (127)
Q Consensus 119 ~~--P~vl~--~~ 127 (127)
.+ |+|++ ||
T Consensus 521 ~~~~~~llILDEP 533 (972)
T 2r6f_A 521 SRLTGVLYVLDEP 533 (972)
T ss_dssp TCCCSCEEEEECT
T ss_pred hCCCCCEEEEeCc
Confidence 56 47776 87
No 133
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.91 E-value=2.7e-07 Score=77.41 Aligned_cols=31 Identities=6% Similarity=-0.027 Sum_probs=24.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEE-EEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSC-YIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig-~v~q~~ 52 (127)
-|++|||| |||+|++ |+ +.+ ..++| ||||+.
T Consensus 795 tGpNgsGK-STlLr~i-Gl-~~~-----------------~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 795 TGPNMGGK-STLMRQA-GL-LAV-----------------MAQMGCYVPAEV 826 (1022)
T ss_dssp ECCTTSSH-HHHHHHH-HH-HHH-----------------HHTTTCCEESSE
T ss_pred ECCCCCCh-HHHHHHH-HH-HHH-----------------HhheeEEeccCc
Confidence 37899999 9999999 98 542 23456 999975
No 134
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.90 E-value=2e-06 Score=58.41 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=18.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|++|||| |||+++|+|+ ++
T Consensus 7 ~GpsGaGK-sTl~~~L~~~-~~ 26 (186)
T 3a00_A 7 SGPSGTGK-STLLKKLFAE-YP 26 (186)
T ss_dssp ESSSSSSH-HHHHHHHHHH-CG
T ss_pred ECCCCCCH-HHHHHHHHhh-CC
Confidence 38999999 9999999999 66
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.88 E-value=1.7e-06 Score=59.74 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC---CcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG---TEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~---~~G~i~i~G~~~ 36 (127)
-|++|||| |||+++|+|+ +.| +.|.|.++|..+
T Consensus 28 ~G~sGsGK-STl~~~l~~~-~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 28 SGAPGSGK-STLSNPLAAA-LSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp ECCTTSCT-HHHHHHHHHH-HHHTTCCEEEEESGGGBC
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhcCCceEEEecCCCcC
Confidence 37899999 9999999999 775 356666665544
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=3e-06 Score=62.43 Aligned_cols=51 Identities=12% Similarity=-0.111 Sum_probs=29.4
Q ss_pred CCCCCCChHHHHHHHHhC-CCCCCCcceEEECCEecCh-hhhcceEEEEeeCccC
Q psy1497 2 RKNFGSDIDKYLLQTSGR-IKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQL 54 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g-l~~~~~~G~i~i~G~~~~~-~~~r~~ig~v~q~~~l 54 (127)
-|++|+|| ||+++++++ + ..++.|++.++|.+... ...+..+++++|...+
T Consensus 42 ~Gp~G~GK-Ttl~~~la~~l-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 42 YGPNGTGK-KTRCMALLESI-FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp ECSTTSSH-HHHHHTHHHHH-SCTTCCC------------------CCEECSSEE
T ss_pred ECCCCCCH-HHHHHHHHHHH-cCCCCCeEEecceeecccccccceeeeecccceE
Confidence 48999999 999999999 7 78999999999987542 2234568888886543
No 137
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.85 E-value=3.4e-06 Score=64.09 Aligned_cols=60 Identities=3% Similarity=-0.016 Sum_probs=42.8
Q ss_pred CCCCCChHHHHHHHHhC------------CCCCCCcceEEECCEecCh----hhhcce---EEEEeeCccCCCCCCHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGR------------IKTSGTEGSITINGHERNL----SQFRKL---SCYIMQDNQLHANLTVEEA 63 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g------------l~~~~~~G~i~i~G~~~~~----~~~r~~---ig~v~q~~~l~~~ltv~e~ 63 (127)
|.+|||| |||+|+|+| . +.|+.|.|.+.|..+.. ...++. ..++.+.+.+++.++..|+
T Consensus 27 G~pnaGK-STL~n~Ltg~~~a~~~~~p~tT-i~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~ 104 (392)
T 1ni3_A 27 GMPNVGK-STFFRAITKSVLGNPANYPYAT-IDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG 104 (392)
T ss_dssp ECSSSSH-HHHHHHHHHSTTTSTTCCSSCC-CCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred CCCCCCH-HHHHHHHHCCCcccccCCCcee-ecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence 6789999 999999999 4 46899999998854311 111222 3477788888887776554
Q ss_pred H
Q psy1497 64 M 64 (127)
Q Consensus 64 l 64 (127)
+
T Consensus 105 L 105 (392)
T 1ni3_A 105 L 105 (392)
T ss_dssp S
T ss_pred H
Confidence 4
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.83 E-value=2.8e-06 Score=58.39 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=17.4
Q ss_pred CCCCCChHHHHHHHHhCCCCC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~ 23 (127)
|++|||| |||+++|+|+ ++
T Consensus 11 GpsGaGK-STLl~~L~~~-~~ 29 (198)
T 1lvg_A 11 GPSGAGK-STLLKKLFQE-HS 29 (198)
T ss_dssp CCTTSSH-HHHHHHHHHH-HT
T ss_pred CCCCCCH-HHHHHHHHhh-Cc
Confidence 7999999 9999999998 54
No 139
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.76 E-value=5.2e-06 Score=61.42 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=48.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecCh-------hhh-----cceEEEE-eeCccCCCCCCHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNL-------SQF-----RKLSCYI-MQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~-------~~~-----r~~ig~v-~q~~~l~~~ltv~e~l~~~ 67 (127)
|.+|+|| ||++..|++. +.+.+|+|.+.+.+... ..+ +..+.++ +|.....|..++.+++...
T Consensus 112 G~~G~GK-TT~~~~LA~~-l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 112 GVNGTGK-TTSLAKMANY-YAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKA 187 (320)
T ss_dssp SSTTSSH-HHHHHHHHHH-HHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH-HHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHHHH
Confidence 6799999 9999999999 78889999998777532 122 5578999 6776667766778887764
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.75 E-value=9.3e-06 Score=59.72 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=28.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
|.+|||| ||+++.|++. +.+.+|+|.+.+.+.
T Consensus 111 G~~GsGK-TTl~~~LA~~-l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 111 GVNGTGK-TTSCGKLAKM-FVDEGKSVVLAAADT 142 (306)
T ss_dssp CCTTSSH-HHHHHHHHHH-HHHTTCCEEEEEECT
T ss_pred cCCCChH-HHHHHHHHHH-HHhcCCEEEEEcccc
Confidence 6799999 9999999999 788888999887764
No 141
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.74 E-value=1.4e-05 Score=54.17 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCC-----------CcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG-----------TEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~-----------~~G~i~i~G~~~ 36 (127)
|.+|||| |||++.++|. ..+ +.|+|.++|.++
T Consensus 36 G~~g~GK-STLl~~l~~~-~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 36 GDSGVGK-SNLLSRFTRN-EFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp ECTTSSH-HHHHHHHHHS-CCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred CcCCCCH-HHHHHHHhcC-CCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999 9999999998 554 578999999753
No 142
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.73 E-value=1.4e-05 Score=52.91 Aligned_cols=23 Identities=26% Similarity=-0.055 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHh----------cCCceee--cC
Q psy1497 105 LNLSGLWGIGVFNV----------LSPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l~----------~~P~vl~--~~ 127 (127)
.+||||||||++|| .+|++++ ||
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEP 90 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEP 90 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESC
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECC
Confidence 89999999999654 7899988 87
No 143
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.72 E-value=2.1e-05 Score=65.82 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=44.2
Q ss_pred cCCCCCCHHHHHHHHHhcccCccccH----------HHHHhhhccchHHHHHHhCCCcc-CCC--CCCCHHHHHHHHH--
Q psy1497 53 QLHANLTVEEAMNVATALKLGKDLTK----------AARKDVFSMRDCHFLHLSGHLPR-GTL--LNLSGLWGIGVFN-- 117 (127)
Q Consensus 53 ~l~~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~l~~~-~~~--~~LSgG~rqrv~l-- 117 (127)
.-+..+||.|.+.|...+. ++. .++.+++ +++..+||... +++ .+|||||+|||+|
T Consensus 464 ~q~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-----~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~ 534 (993)
T 2ygr_A 464 AEVCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-----GFLLDVGLEYLSLSRAAATLSGGEAQRIRLAT 534 (993)
T ss_dssp GCSSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-----HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-----HHHhhCCCCccccCCCcccCCHHHHHHHHHHH
Confidence 3456689999998854442 222 1222332 34788999754 566 9999999999975
Q ss_pred --hcC--Cceee--cC
Q psy1497 118 --VLS--PLATY--EP 127 (127)
Q Consensus 118 --~~~--P~vl~--~~ 127 (127)
+.+ |+|++ ||
T Consensus 535 aL~~~~~~~llILDEP 550 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEP 550 (993)
T ss_dssp HHTTCCCSCEEEEECT
T ss_pred HHhhCCCCcEEEEeCc
Confidence 456 47766 87
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.70 E-value=2.5e-06 Score=64.99 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=30.1
Q ss_pred CCCCCChHHHHHH--HHhCCCCCCCcc-----eEEECCEec-Chh---hhcceEEEEee
Q psy1497 3 KNFGSDIDKYLLQ--TSGRIKTSGTEG-----SITINGHER-NLS---QFRKLSCYIMQ 50 (127)
Q Consensus 3 ~~~GsGK~STLl~--~l~gl~~~~~~G-----~i~i~G~~~-~~~---~~r~~ig~v~q 50 (127)
|++|||| |||++ ++.+. .+++.| .|+|++.+. ... .+.+.+++.+|
T Consensus 185 G~sGsGK-TTLl~~la~~~~-~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 185 GEFRTGK-SQLCHTLAVTCQ-IPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp ESTTSSH-HHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred cCCCCCh-HHHHHHHHHHhc-cCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 7899999 99999 44566 565444 888888763 222 23345665544
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.70 E-value=6.7e-06 Score=55.99 Aligned_cols=24 Identities=8% Similarity=-0.205 Sum_probs=20.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG 27 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G 27 (127)
-|++|||| ||++++|+++ ..|+.|
T Consensus 12 ~G~~GsGK-STl~~~L~~~-~~~~~~ 35 (207)
T 2j41_A 12 SGPSGVGK-GTVRKRIFED-PSTSYK 35 (207)
T ss_dssp ECSTTSCH-HHHHHHHHHC-TTCCEE
T ss_pred ECCCCCCH-HHHHHHHHHh-hCCCeE
Confidence 37899999 9999999999 766655
No 146
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.69 E-value=4.1e-06 Score=68.78 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=29.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCC-CCcceEEECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~-~~~G~i~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
-|++|||| |||+|+++|+ .. ...|. .+.. .+..+++++| +++.+++.+++..+
T Consensus 613 tGpNGsGK-STlLr~iagl-~~~~q~G~------~vpa--~~~~i~~~~~---i~~~~~~~d~l~~~ 666 (800)
T 1wb9_A 613 TGPNMGGK-STYMRQTALI-ALMAYIGS------YVPA--QKVEIGPIDR---IFTRVGAADDLASG 666 (800)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHHHTTTC------CBSS--SEEEECCCCE---EEEEEC--------
T ss_pred ECCCCCCh-HHHHHHHHHH-HHHHhcCc------ccch--hcccceeHHH---HHhhCCHHHHHHhh
Confidence 48999999 9999999998 42 22331 1111 1245677665 66777777777554
No 147
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.69 E-value=8.7e-06 Score=67.71 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||||+++++
T Consensus 679 tGPNGaGK-STlLr~i~~i 696 (918)
T 3thx_B 679 TGPNMGGK-SSYIKQVALI 696 (918)
T ss_dssp ESCCCHHH-HHHHHHHHHH
T ss_pred ECCCCCch-HHHHHHHHHH
Confidence 38999999 9999999865
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.68 E-value=1e-06 Score=58.94 Aligned_cols=58 Identities=10% Similarity=-0.012 Sum_probs=37.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChh-hhc-ceEEEEeeCccCCCCCCHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLS-QFR-KLSCYIMQDNQLHANLTVEEAMN 65 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~-~~r-~~ig~v~q~~~l~~~ltv~e~l~ 65 (127)
-|.+|||| ||+.++|++. + |.+.+++.++... ..+ ..+|+.+|+...++.+++.+++.
T Consensus 14 ~G~~GsGK-STl~~~l~~~-~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 73 (175)
T 1knq_A 14 MGVSGSGK-SAVASEVAHQ-L----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAA 73 (175)
T ss_dssp ECSTTSCH-HHHHHHHHHH-H----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHh-h----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHH
Confidence 37899999 9999999987 4 7888887665321 111 13566666544444455555543
No 149
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.67 E-value=7.3e-06 Score=68.30 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=14.0
Q ss_pred CCCCCCChHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTS 17 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l 17 (127)
-|++|||| |||+|++
T Consensus 668 tGpNGsGK-STlLr~i 682 (934)
T 3thx_A 668 TGPNMGGK-STYIRQT 682 (934)
T ss_dssp ECCTTSSH-HHHHHHH
T ss_pred ECCCCCCH-HHHHHHH
Confidence 38999999 9999999
No 150
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.67 E-value=2.6e-06 Score=63.71 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=40.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCc----ceEEEC----CEec--ChhhhcceEEEEeeCccCCCCCCHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTE----GSITIN----GHER--NLSQFRKLSCYIMQDNQLHANLTVEEAM 64 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~----G~i~i~----G~~~--~~~~~r~~ig~v~q~~~l~~~ltv~e~l 64 (127)
|++|||| |||+++|+|+ +.|++ |+|+++ |.+. ....+ ..|++++|+..++. .|+.+|+
T Consensus 177 G~nGsGK-STLlk~L~gl-~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~-~t~~~nl 244 (365)
T 1lw7_A 177 GGESSGK-SVLVNKLAAV-FNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYA-VRHSHKI 244 (365)
T ss_dssp CCTTSHH-HHHHHHHHHH-TTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHH-HHHCSSE
T ss_pred CCCCCCH-HHHHHHHHHH-hCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHH-HhccCCE
Confidence 7899999 9999999999 89999 988873 4332 12233 44777777654332 3455554
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=5.7e-05 Score=57.80 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCCCCChHHHHHHHHhCCCCC------------CCcceEEECCEec---ChhhhcceEEEEeeCccCCCCCCHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS------------GTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAM 64 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~------------~~~G~i~i~G~~~---~~~~~r~~ig~v~q~~~l~~~ltv~e~l 64 (127)
|.+|||| |||++.|+|. .. +..|.+.++|.++ +....++...+.+|....|..+++.+++
T Consensus 187 G~~gvGK-STLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 187 GRPNVGK-STLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp CSTTSSH-HHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred CCCCCCH-HHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7899999 9999999998 43 5678999999863 2222333344444444444444444444
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.58 E-value=2e-05 Score=52.81 Aligned_cols=48 Identities=6% Similarity=-0.080 Sum_probs=31.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCE--e-cCh------hhhcceEEEEeeCc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGH--E-RNL------SQFRKLSCYIMQDN 52 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~--~-~~~------~~~r~~ig~v~q~~ 52 (127)
|++|||| |||+++|.++ +.+..|.....+. + +.. ......|.+++|++
T Consensus 33 G~NGsGK-Stll~ai~~~-l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 33 GANGSGK-SNIGDAILFV-LGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp ECTTSSH-HHHHHHHHHH-TTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred CCCCCCH-HHHHHHHHHH-HcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7899999 9999999998 6776664432221 1 110 12345688899875
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.55 E-value=2.1e-06 Score=59.50 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=36.7
Q ss_pred CCCCCCChHHHHHHHHhCCCC---CCCcceEEE--------CCEecCh----hhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKT---SGTEGSITI--------NGHERNL----SQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~---~~~~G~i~i--------~G~~~~~----~~~r~~ig~v~q~~ 52 (127)
-|.+|||| ||+.++|++. + .++.|++.. .|.++.. ..+++.+++++|++
T Consensus 11 ~G~~GsGK-STl~~~L~~~-~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 11 DGPSGAGK-GTLCKAMAEA-LQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred ECCCCCCH-HHHHHHHHHH-hCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 37899999 9999999876 4 578898877 6766532 34566788888753
No 154
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.47 E-value=2.7e-05 Score=54.31 Aligned_cols=19 Identities=5% Similarity=-0.087 Sum_probs=11.0
Q ss_pred CCCCCCChHHHHHHHHh-CCCC
Q psy1497 2 RKNFGSDIDKYLLQTSG-RIKT 22 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~-gl~~ 22 (127)
-|++|||| |||+++|+ |+ +
T Consensus 33 ~Gp~GsGK-STl~~~L~~~~-~ 52 (231)
T 3lnc_A 33 SSPSGCGK-TTVANKLLEKQ-K 52 (231)
T ss_dssp ECSCC-----CHHHHHHC----
T ss_pred ECCCCCCH-HHHHHHHHhcC-C
Confidence 38999999 99999999 99 7
No 155
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=1.4e-05 Score=54.84 Aligned_cols=32 Identities=9% Similarity=-0.100 Sum_probs=27.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|.+|||| |||+++|++. +.+.+|.|.+.+.+
T Consensus 28 ~G~~GsGK-stl~~~l~~~-~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 28 DGLSRSGK-TTLANQLSQT-LREQGISVCVFHMD 59 (201)
T ss_dssp EECTTSSH-HHHHHHHHHH-HHHTTCCEEEEEGG
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhcCCeEEEeccC
Confidence 37899999 9999999999 77788888876554
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=3.1e-05 Score=52.14 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=21.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC-CcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG-TEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~-~~G~i~ 30 (127)
-|++|||| |||+++|++. .++ ..|.|.
T Consensus 11 ~GpsGsGK-STL~~~L~~~-~~~~~~~~i~ 38 (180)
T 1kgd_A 11 LGAHGVGR-RHIKNTLITK-HPDRFAYPIP 38 (180)
T ss_dssp ECCTTSSH-HHHHHHHHHH-CTTTEECCCC
T ss_pred ECCCCCCH-HHHHHHHHhh-CCccEEEeee
Confidence 38999999 9999999998 653 455554
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.37 E-value=0.00013 Score=49.39 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCCCCChHHHHHHHHhCCCCC-----CC------cceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS-----GT------EGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~-----~~------~G~i~i~G~~ 35 (127)
|.+|||| |||++.++|. .. |+ .|+|.++|.+
T Consensus 12 G~~g~GK-STLl~~l~~~-~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 12 GDSGVGK-SNLLSRFTRN-EFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp SSTTSSH-HHHHHHHHHS-CCCC---CCCSCEEEEEEEEETTEE
T ss_pred CcCCCCH-HHHHHHHhcC-CCCCCCCCccceeEEEEEEEECCEE
Confidence 7899999 9999999997 32 33 5788999875
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.37 E-value=1.5e-05 Score=54.58 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE--EECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI--TINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i--~i~G~~~ 36 (127)
-|.+|||| ||+.++|++. +. ..|.+ +++|.++
T Consensus 31 ~G~sGsGK-STl~~~La~~-l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 31 TGLSGSGK-STLACALNQM-LY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ECSTTSSH-HHHHHHHHHH-HH-HTTCCEEEEEHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-HH-hcCceEEEecCchh
Confidence 47899999 9999999998 65 77887 8887654
No 159
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.33 E-value=5.2e-05 Score=53.04 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-|++|||| ||++++|+++ .|+|.+.+++.
T Consensus 26 ~G~~GsGK-STl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 26 EGNIGSGK-TTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp ECSTTSCH-HHHHHTTGGG-----TTTEEEECCTH
T ss_pred ECCCCCCH-HHHHHHHHhc-----cCCeEEEecCH
Confidence 37899999 9999999986 68899988763
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=4.4e-05 Score=50.24 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=26.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc--eEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG--SITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G--~i~i~G~~~ 36 (127)
-|++|||| |||++++++. ..+ +| .+++++.++
T Consensus 42 ~G~~G~GK-TtL~~~i~~~-~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 42 WGEEGAGK-SHLLQAWVAQ-ALE-AGKNAAYIDAASM 75 (149)
T ss_dssp ESSSTTTT-CHHHHHHHHH-HHT-TTCCEEEEETTTS
T ss_pred ECCCCCCH-HHHHHHHHHH-HHh-cCCcEEEEcHHHh
Confidence 37899999 9999999998 655 57 778877664
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.22 E-value=2.8e-05 Score=53.52 Aligned_cols=34 Identities=6% Similarity=-0.157 Sum_probs=27.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN 37 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~ 37 (127)
-|++|||| |||++.+++. ..+.+|.|.+.+.+..
T Consensus 29 ~G~~GsGK-Ttl~~~l~~~-~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 29 TGEPGTGK-TIFSLHFIAK-GLRDGDPCIYVTTEES 62 (235)
T ss_dssp ECSTTSSH-HHHHHHHHHH-HHHHTCCEEEEESSSC
T ss_pred EcCCCCCH-HHHHHHHHHH-HHHCCCeEEEEEcccC
Confidence 37899999 9999999988 6677888877665543
No 162
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.21 E-value=6.6e-05 Score=55.57 Aligned_cols=28 Identities=4% Similarity=-0.031 Sum_probs=22.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC--CCcceEEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS--GTEGSITI 31 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~--~~~G~i~i 31 (127)
-|++|||| |||+++|.++ +. |++|.|.+
T Consensus 98 ~GpsGSGK-STl~~~L~~l-l~~~~~~~~v~~ 127 (321)
T 3tqc_A 98 AGSVAVGK-STTSRVLKAL-LSRWPDHPNVEV 127 (321)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HTTSTTCCCEEE
T ss_pred ECCCCCCH-HHHHHHHHHH-hcccCCCCeEEE
Confidence 37899999 9999999998 65 46677544
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.19 E-value=0.00011 Score=50.89 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=17.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|++|||| |||++.|.+. ++
T Consensus 25 ~GPSGaGK-sTL~~~L~~~-~~ 44 (197)
T 3ney_A 25 IGASGVGR-SHIKNALLSQ-NP 44 (197)
T ss_dssp ECCTTSSH-HHHHHHHHHH-CT
T ss_pred ECcCCCCH-HHHHHHHHhh-CC
Confidence 38999999 9999999987 54
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.14 E-value=0.00017 Score=49.96 Aligned_cols=47 Identities=6% Similarity=-0.111 Sum_probs=32.5
Q ss_pred CCCCCCChHHHHHHHHhC--CCCCC-----CcceEEECCEec-Ch---hhhcceEEEEee
Q psy1497 2 RKNFGSDIDKYLLQTSGR--IKTSG-----TEGSITINGHER-NL---SQFRKLSCYIMQ 50 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g--l~~~~-----~~G~i~i~G~~~-~~---~~~r~~ig~v~q 50 (127)
-|++|||| |||++.+++ . .++ ..|.+++++.+. .. ....+.+++.+|
T Consensus 30 ~G~~GsGK-Ttl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 30 FGEFRTGK-TQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp ECCTTSSH-HHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred ECCCCCcH-HHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 37899999 999999999 5 444 578889988763 22 223344566553
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.08 E-value=5.1e-05 Score=56.92 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceE-EECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 67 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i-~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~~ 67 (127)
|++|||| |||+..++.. ..+..|.| ++++.........+++|+.+|+..+....++.+.+...
T Consensus 68 GppGsGK-STLal~la~~-~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 68 GQESSGK-TTLALHAIAE-AQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ESTTSSH-HHHHHHHHHH-HHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH-HHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 7899999 9999999987 66677766 66665533233445677777776666666787776553
No 166
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.05 E-value=0.00044 Score=47.16 Aligned_cols=20 Identities=10% Similarity=-0.090 Sum_probs=17.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|.+|||| ||+.+.|++. +.
T Consensus 27 ~G~~GsGK-STl~~~L~~~-~~ 46 (207)
T 2qt1_A 27 SGVTNSGK-TTLAKNLQKH-LP 46 (207)
T ss_dssp EESTTSSH-HHHHHHHHTT-ST
T ss_pred ECCCCCCH-HHHHHHHHHh-cC
Confidence 37899999 9999999998 53
No 167
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.00 E-value=9.1e-05 Score=58.54 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc-eEE-ECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG-SIT-INGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G-~i~-i~G~~~ 36 (127)
-|.+|||| |||+++|++. +.+++| +|. ++|.++
T Consensus 375 iG~sGSGK-STLar~La~~-L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 375 TGLSGAGK-STLARALAAR-LMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EESSCHHH-HHHHHHHHHH-HHTTCSSCEEEESSHHH
T ss_pred ECCCCChH-HHHHHHHHHh-hcccCCceEEEECCcHH
Confidence 37899999 9999999999 788886 785 888654
No 168
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.99 E-value=8.9e-05 Score=55.26 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=26.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
|.+|||| |||++.|+|. ..+.+|+|.+.+.+
T Consensus 81 G~pgaGK-STLln~L~~~-~~~~~~~v~V~~~d 111 (349)
T 2www_A 81 GPPGAGK-STFIEYFGKM-LTERGHKLSVLAVD 111 (349)
T ss_dssp CCTTSSH-HHHHHHHHHH-HHHTTCCEEEEECC
T ss_pred cCCCCCH-HHHHHHHHHH-hhhcCCeEEEEeec
Confidence 7899999 9999999998 67778888776654
No 169
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.97 E-value=0.0007 Score=55.95 Aligned_cols=37 Identities=16% Similarity=-0.221 Sum_probs=28.7
Q ss_pred HHHHHhCCCcc-CCC--CCCCHHHHHHHH----HhcCCc--eee--cC
Q psy1497 91 HFLHLSGHLPR-GTL--LNLSGLWGIGVF----NVLSPL--ATY--EP 127 (127)
Q Consensus 91 ~~l~~~~l~~~-~~~--~~LSgG~rqrv~----l~~~P~--vl~--~~ 127 (127)
+.+..+||... +++ .+|||||+|||+ |+.+|+ |++ ||
T Consensus 361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 35778999764 566 999999999996 467884 655 87
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.96 E-value=0.00058 Score=51.19 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=25.4
Q ss_pred CCCCCChHHHHHHHHhCCCCC-----------CCcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTS-----------GTEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~-----------~~~G~i~i~G~~~ 36 (127)
|.+|||| |||++.|+|. .. ++.|.|.++|..+
T Consensus 186 G~~naGK-STLln~L~~~-~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 186 GYTNSGK-TSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CBTTSSH-HHHHHHHHCC------------CCSCEEEEEETTEEE
T ss_pred CCCCCCH-HHHHHHHHCC-CccccCCcccccCCEEEEEEECCEEE
Confidence 7899999 9999999998 44 5668888888653
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.92 E-value=0.00071 Score=53.74 Aligned_cols=47 Identities=9% Similarity=-0.084 Sum_probs=36.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc-ceEEECCEecChhhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE-GSITINGHERNLSQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~-G~i~i~G~~~~~~~~r~~ig~v~q~~ 52 (127)
-|++|+|| |||+++|+++ ..+.. |.+.+++.+... ....++++|+..
T Consensus 66 ~Gp~GtGK-Ttlar~ia~~-l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~ 113 (604)
T 3k1j_A 66 IGEPGTGK-SMLGQAMAEL-LPTETLEDILVFPNPEDE--NMPRIKTVPACQ 113 (604)
T ss_dssp ECCTTSSH-HHHHHHHHHT-SCCSSCEEEEEECCTTCT--TSCEEEEEETTH
T ss_pred EeCCCCCH-HHHHHHHhcc-CCcccCCeEEEeCCcccc--cCCcEEEEecch
Confidence 48999999 9999999999 77766 788887765432 345688887643
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.89 E-value=0.00032 Score=48.22 Aligned_cols=21 Identities=5% Similarity=-0.165 Sum_probs=18.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~ 24 (127)
-|++|||| |||++.|++. +++
T Consensus 14 ~GpsGsGK-sTl~~~L~~~-~~~ 34 (208)
T 3tau_A 14 SGPSGVGK-GTVREAVFKD-PET 34 (208)
T ss_dssp ECCTTSCH-HHHHHHHHHS-TTC
T ss_pred ECcCCCCH-HHHHHHHHhh-CCC
Confidence 38999999 9999999998 665
No 173
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00036 Score=46.02 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=17.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|.+|||| ||+.++|++. +.
T Consensus 10 ~G~~GsGK-STl~~~La~~-l~ 29 (173)
T 1kag_A 10 VGPMGAGK-STIGRQLAQQ-LN 29 (173)
T ss_dssp ECCTTSCH-HHHHHHHHHH-TT
T ss_pred ECCCCCCH-HHHHHHHHHH-hC
Confidence 37899999 9999999997 54
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.78 E-value=0.00013 Score=48.82 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG 27 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G 27 (127)
-|++|||| |||++++++. ..+..|
T Consensus 44 ~G~~G~GK-TtL~~~i~~~-~~~~~g 67 (180)
T 3ec2_A 44 VGSPGVGK-THLAVATLKA-IYEKKG 67 (180)
T ss_dssp CCSSSSSH-HHHHHHHHHH-HHHHSC
T ss_pred ECCCCCCH-HHHHHHHHHH-HHHHcC
Confidence 48999999 9999999998 666666
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.66 E-value=0.00037 Score=54.84 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGH 34 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~ 34 (127)
-|++|+|| |||+++|++. ..+..|.|.+.|.
T Consensus 114 ~Gp~GtGK-Ttlar~ia~~-l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 114 AGPPGVGK-TSLAKSIAKS-LGRKFVRISLGGV 144 (543)
T ss_dssp ESSSSSSH-HHHHHHHHHH-HTCEEEEECCCC-
T ss_pred ECCCCCCH-HHHHHHHHHh-cCCCeEEEEeccc
Confidence 48999999 9999999999 7888888888774
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.61 E-value=0.0002 Score=54.04 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=28.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEecChhhhcceEEEEeeCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 52 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~~~~~r~~ig~v~q~~ 52 (127)
-|++|||| |||+++|++. . +|.+.... .........+++++|..
T Consensus 175 ~G~~GsGK-STl~~~l~~~-~---~g~~~~~~--~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 175 KGPIDSGK-TTLAAALLEL-C---GGKALNVN--LPLDRLNFELGVAIDQF 218 (377)
T ss_dssp ECSTTSSH-HHHHHHHHHH-H---CCEEECCS--SCTTTHHHHHGGGTTCS
T ss_pred ECCCCCCH-HHHHHHHHhh-c---CCcEEEEe--ccchhHHHHHHHhcchh
Confidence 48999999 9999999987 4 57776521 11111222366666654
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.49 E-value=0.00036 Score=50.83 Aligned_cols=33 Identities=9% Similarity=-0.061 Sum_probs=29.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEecC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHERN 37 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~~ 37 (127)
+.+|+|| ||++..|++. +.+..|+|.+.+.+..
T Consensus 105 g~~G~GK-TT~~~~la~~-~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 105 GLQGSGK-TTTAAKLALY-YKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCTTTTH-HHHHHHHHHH-HHHTTCCEEEEECCSS
T ss_pred CCCCCCH-HHHHHHHHHH-HHHcCCeEEEecCCcc
Confidence 6789999 9999999999 7888999999887753
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.48 E-value=0.0003 Score=52.63 Aligned_cols=27 Identities=15% Similarity=-0.068 Sum_probs=17.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~ 30 (127)
-|.+|+|| |||++.|.+. .....+.+.
T Consensus 43 vG~~g~GK-STLln~L~~~-~~~~~~~~~ 69 (361)
T 2qag_A 43 VGESGLGK-STLINSLFLT-DLYPERVIP 69 (361)
T ss_dssp CCCTTSCH-HHHHHHHTTC-CC-------
T ss_pred EcCCCCCH-HHHHHHHhCC-CCCCCCccc
Confidence 37899999 9999999887 444444443
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.47 E-value=0.0003 Score=48.30 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=26.2
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc--eEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG--SITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G--~i~i~G~~ 35 (127)
-|.+|||| ||+.+.|++. +.|..| .+.+++..
T Consensus 31 ~G~~GsGK-sT~~~~l~~~-l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 31 TGLSASGK-STLAVELEHQ-LVRDRRVHAYRLDGDN 64 (211)
T ss_dssp ECSTTSSH-HHHHHHHHHH-HHHHHCCCEEEECHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-hccccCCcEEEECChH
Confidence 47899999 9999999998 666777 78887643
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.00035 Score=50.96 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=24.9
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc-eEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG-SITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G-~i~i~G~~ 35 (127)
|++|||| ||++..|++. +.+++| +|.+-+.+
T Consensus 112 G~~GsGK-TTl~~~LA~~-l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 112 GSTGAGK-TTTLAKLAAI-SMLEKHKKIAFITTD 143 (296)
T ss_dssp ESTTSSH-HHHHHHHHHH-HHHTTCCCEEEEECC
T ss_pred CCCCCCH-HHHHHHHHHH-HHHhcCCEEEEEecC
Confidence 6789999 9999999999 777778 66664444
No 181
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.38 E-value=0.0017 Score=43.80 Aligned_cols=23 Identities=13% Similarity=-0.266 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHH----h----cCCceee--cC
Q psy1497 105 LNLSGLWGIGVFN----V----LSPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l----~----~~P~vl~--~~ 127 (127)
..||||||||++| + ..|++++ ||
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp 95 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEI 95 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCC
Confidence 8899999999964 3 2357766 76
No 182
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.38 E-value=0.0018 Score=42.79 Aligned_cols=17 Identities=6% Similarity=-0.121 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+++.
T Consensus 14 G~~gvGK-StL~~~l~~~ 30 (188)
T 2wjg_A 14 GNPNVGK-STIFNALTGE 30 (188)
T ss_dssp CSTTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999984
No 183
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.37 E-value=0.00043 Score=46.12 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=22.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcc--eEEECCE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEG--SITINGH 34 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G--~i~i~G~ 34 (127)
-|.+|||| ||+.++|++. +.+ .| .|.+++.
T Consensus 11 ~G~~GsGK-ST~~~~L~~~-l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 11 TGLSGAGK-TTVSMALEEY-LVC-HGIPCYTLDGD 42 (179)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHH-TTCCEEEEEHH
T ss_pred ECCCCCCH-HHHHHHHHHH-Hhh-CCCcEEEECCh
Confidence 47899999 9999999987 544 45 5555553
No 184
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.31 E-value=0.0045 Score=40.35 Aligned_cols=17 Identities=6% Similarity=-0.121 Sum_probs=15.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.++|.
T Consensus 10 G~~gvGK-StL~~~l~~~ 26 (165)
T 2wji_A 10 GNPNVGK-STIFNALTGE 26 (165)
T ss_dssp CSTTSSH-HHHHHHHHCC
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999996
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.30 E-value=0.0019 Score=47.95 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=23.3
Q ss_pred CCCCCChHHHHHHHHhCCC-CCCCcceEEECCE
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-TSGTEGSITINGH 34 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-~~~~~G~i~i~G~ 34 (127)
|++|||| |||++.|+|.. .+..+|.++-...
T Consensus 41 G~~~sGK-SSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 41 GGQSSGK-SSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CBTTSSH-HHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred CCCCCcH-HHHHHHHhCCCcCCCCCCcccCcce
Confidence 7899999 99999999942 4566676654433
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0019 Score=43.85 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=16.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.++|+++
T Consensus 8 ~G~~GsGK-ST~~~~La~l 25 (206)
T 1jjv_A 8 TGGIGSGK-TTIANLFTDL 25 (206)
T ss_dssp ECSTTSCH-HHHHHHHHTT
T ss_pred ECCCCCCH-HHHHHHHHHC
Confidence 37899999 9999999985
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.09 E-value=0.00078 Score=49.88 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
|.+|||| |||++.|++. +.+..++|.+-+.+
T Consensus 63 G~~g~GK-STl~~~l~~~-~~~~~~~v~v~~~d 93 (341)
T 2p67_A 63 GTPGAGK-STFLEAFGML-LIREGLKVAVIAVD 93 (341)
T ss_dssp ECTTSCH-HHHHHHHHHH-HHHTTCCEEEEEEC
T ss_pred cCCCCCH-HHHHHHHHHH-HHhcCCeEEEEeec
Confidence 6789999 9999999998 67777777765544
No 188
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.06 E-value=0.0047 Score=40.70 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+++.
T Consensus 11 G~~g~GK-StLl~~l~~~ 27 (172)
T 2gj8_A 11 GRPNAGK-SSLLNALAGR 27 (172)
T ss_dssp ESTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6899999 9999999986
No 189
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.03 E-value=0.0014 Score=44.19 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC---CcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG---TEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~---~~G~i~i~G~~ 35 (127)
-|.+|||| |||++.|.+. +.+ .-|.|..++++
T Consensus 12 ~G~sGsGK-TTl~~~l~~~-l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 12 AAWSGTGK-TTLLKKLIPA-LCARGIRPGLIKHTHHD 46 (174)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HHHTTCCEEEEEECCC-
T ss_pred EeCCCCCH-HHHHHHHHHh-ccccCCceeEEeeCCCc
Confidence 37899999 9999999886 433 34667765543
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0013 Score=44.08 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=21.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~ 30 (127)
-|.+|||| ||+.+.|+.. +.+..+.+.
T Consensus 19 ~G~~GsGK-sT~~~~L~~~-l~~~~~~~~ 45 (186)
T 2yvu_A 19 TGLPGSGK-TTIATRLADL-LQKEGYRVE 45 (186)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HHHTTCCEE
T ss_pred EcCCCCCH-HHHHHHHHHH-HHhcCCeEE
Confidence 37899999 9999999988 665666653
No 191
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.98 E-value=0.0034 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+++.
T Consensus 9 G~~gvGK-StLl~~l~~~ 25 (184)
T 2zej_A 9 GNTGSGK-TTLLQQLMKT 25 (184)
T ss_dssp SCTTSSH-HHHHHHHTCC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999995
No 192
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.85 E-value=0.0037 Score=40.78 Aligned_cols=18 Identities=0% Similarity=-0.322 Sum_probs=15.8
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| ||+.+.|+..
T Consensus 7 ~G~~GsGK-sT~~~~L~~~ 24 (173)
T 3kb2_A 7 EGPDCCFK-STVAAKLSKE 24 (173)
T ss_dssp ECSSSSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48999999 9999999865
No 193
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.84 E-value=0.0026 Score=48.36 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=18.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCc
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTE 26 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~ 26 (127)
-|++|||| |||+++|+++ ..+.+
T Consensus 32 ~G~nG~GK-stll~ai~~~-~~~~~ 54 (430)
T 1w1w_A 32 IGPNGSGK-SNMMDAISFV-LGVRS 54 (430)
T ss_dssp ECSTTSSH-HHHHHHHHHH-TTC--
T ss_pred ECCCCCCH-HHHHHHHHhh-hcccc
Confidence 37899999 9999999998 66654
No 194
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.81 E-value=0.0054 Score=42.61 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=18.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG 27 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G 27 (127)
|.+|+|| |||++.|+|. ..+.++
T Consensus 36 G~~g~GK-Stlin~l~g~-~~~~~~ 58 (239)
T 3lxx_A 36 GKTGAGK-SATGNSILGR-KVFHSG 58 (239)
T ss_dssp CCTTSSH-HHHHHHHHTS-CCSCC-
T ss_pred CCCCCCH-HHHHHHHcCC-CcCccC
Confidence 7899999 9999999997 444433
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.80 E-value=0.0026 Score=43.01 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.8
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.++|+++
T Consensus 7 ~G~~GsGK-STl~~~L~~~ 24 (204)
T 2if2_A 7 TGNIGCGK-STVAQMFREL 24 (204)
T ss_dssp EECTTSSH-HHHHHHHHHT
T ss_pred ECCCCcCH-HHHHHHHHHC
Confidence 37899999 9999999874
No 196
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.75 E-value=0.0043 Score=41.97 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=16.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 24 ~G~~GsGK-STla~~L~~~ 41 (202)
T 3t61_A 24 MGVSGSGK-SSVGEAIAEA 41 (202)
T ss_dssp ECSTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999876
No 197
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.75 E-value=0.0079 Score=40.50 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=23.2
Q ss_pred CCCCCChHHHHHHHHhCCC-------CCCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIK-------TSGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~-------~~~~~G~i~i~G~~ 35 (127)
|.+|+|| |||++.+.+-. ..++.+.+.++|..
T Consensus 32 G~~~vGK-SsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 32 GLDNAGK-TTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp EETTSSH-HHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred CCCCCCH-HHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 6789999 99999998731 12356677777754
No 198
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.62 E-value=0.0031 Score=47.23 Aligned_cols=29 Identities=7% Similarity=-0.083 Sum_probs=24.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITING 33 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G 33 (127)
|++|||| ||+++.++.. ..+..+.|.+.+
T Consensus 42 G~~G~GK-s~~~~~~~~~-~~~~~~~~~~~D 70 (392)
T 4ag6_A 42 AKPGAGK-SFTAKMLLLR-EYMQGSRVIIID 70 (392)
T ss_dssp CCTTSSH-HHHHHHHHHH-HHTTTCCEEEEE
T ss_pred cCCCCCH-HHHHHHHHHH-HHHCCCEEEEEe
Confidence 7899999 9999999987 567778887743
No 199
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.60 E-value=0.0053 Score=41.74 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 18 ~G~sGsGK-sTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGK-GTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999999876
No 200
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.59 E-value=0.0045 Score=44.03 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=16.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| |||++.++|.
T Consensus 10 G~~g~GK-TTL~n~l~g~ 26 (271)
T 3k53_A 10 GNPNVGK-TTIFNALTGL 26 (271)
T ss_dssp ECSSSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999998
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.58 E-value=0.0053 Score=40.43 Aligned_cols=18 Identities=0% Similarity=-0.038 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 9 ~G~~GsGK-ST~a~~La~~ 26 (178)
T 1qhx_A 9 NGGSSAGK-SGIVRCLQSV 26 (178)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 47899999 9999999875
No 202
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.54 E-value=0.013 Score=38.95 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCCCChHHHHHHHHhCCC----CCCCcc----eEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIK----TSGTEG----SITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~----~~~~~G----~i~i~G~~ 35 (127)
|..|+|| |||++.+.+-. ..|+.+ .+.++|..
T Consensus 27 G~~~vGK-SsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 27 GNLSSGK-SALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp CCTTSCH-HHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred CCCCCCH-HHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 7899999 99997655431 235666 56677754
No 203
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.52 E-value=0.0059 Score=41.34 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 31 ~G~~GsGK-sTl~~~La~~ 48 (199)
T 3vaa_A 31 TGYMGAGK-TTLGKAFARK 48 (199)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999865
No 204
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.50 E-value=0.0011 Score=53.48 Aligned_cols=46 Identities=13% Similarity=-0.006 Sum_probs=30.0
Q ss_pred CCCCCChHHHHHHHHhCCCCCC--CcceEEECCEecC---hhhhcceEEEEeeC
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG--TEGSITINGHERN---LSQFRKLSCYIMQD 51 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~--~~G~i~i~G~~~~---~~~~r~~ig~v~q~ 51 (127)
|.+|||| |||++.|++. ..+ ..|+| ++|..+. ..+.++.+++.+|.
T Consensus 16 G~~gaGK-TTLl~~L~~~-~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 16 GHAGSGK-TTLTEALLYK-TGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ESTTSSH-HHHHHHHHHH-TTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred CCCCChH-HHHHHHHHHh-cCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence 6789999 9999999976 443 67887 5665432 22334455555544
No 205
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.48 E-value=0.008 Score=40.16 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=22.5
Q ss_pred CCCCCChHHHHHHHHhCCC---C----CCCcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIK---T----SGTEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~---~----~~~~G~i~i~G~~ 35 (127)
|..|+|| |||++.+.+-. + .++.+.+.++|..
T Consensus 30 G~~~vGK-Ssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 30 GLDNAGK-TTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ESTTSSH-HHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred CCCCCCH-HHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 6899999 99999998721 1 2245566777754
No 206
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.48 E-value=0.005 Score=43.02 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=22.3
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI 31 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i 31 (127)
-|.+|||| ||+++.|+.. +.+ .+.+..
T Consensus 32 ~G~~GsGK-sT~~~~l~~~-l~~-~~~~~~ 58 (229)
T 4eaq_A 32 EGPEGSGK-TTVINEVYHR-LVK-DYDVIM 58 (229)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HTT-TSCEEE
T ss_pred EcCCCCCH-HHHHHHHHHH-Hhc-CCCcee
Confidence 37899999 9999999998 676 666654
No 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.44 E-value=0.0065 Score=40.71 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 6 ~G~~GsGK-sT~~~~L~~~ 23 (205)
T 2jaq_A 6 FGTVGAGK-STISAEISKK 23 (205)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCccCH-HHHHHHHHHh
Confidence 47899999 9999999984
No 208
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.43 E-value=0.0063 Score=45.55 Aligned_cols=17 Identities=18% Similarity=0.091 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|++|||| |||+++|.+
T Consensus 32 ~G~nG~GK-ttll~ai~~ 48 (359)
T 2o5v_A 32 YGENGAGK-TNLLEAAYL 48 (359)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCh-hHHHHHHHH
Confidence 37999999 999999997
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.40 E-value=0.01 Score=45.12 Aligned_cols=31 Identities=3% Similarity=-0.022 Sum_probs=22.6
Q ss_pred CCCCCChHHHHHHHHhCCC----------CCCCcceEEECCE
Q psy1497 3 KNFGSDIDKYLLQTSGRIK----------TSGTEGSITINGH 34 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~----------~~~~~G~i~i~G~ 34 (127)
|.+|+|| |||++.|+|.. ..|..|.|.+.+.
T Consensus 29 G~pnvGK-STL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 29 GLPNVGK-STFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSSH-HHHHHHHHC-------------CCSEEEEECCCH
T ss_pred CCCCCCH-HHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 6789999 99999999871 2456677776553
No 210
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.32 E-value=0.0072 Score=44.52 Aligned_cols=23 Identities=26% Similarity=-0.013 Sum_probs=18.4
Q ss_pred CCCCHHHHHHH------H----HhcCCceee--cC
Q psy1497 105 LNLSGLWGIGV------F----NVLSPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv------~----l~~~P~vl~--~~ 127 (127)
.+|||||||++ + ++.+|++|+ ||
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp 281 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEP 281 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 78999999965 3 346999988 87
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.31 E-value=0.011 Score=44.29 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=23.5
Q ss_pred CCCCCChHHHHHHHHhCCC----------CCCCcceEEECC
Q psy1497 3 KNFGSDIDKYLLQTSGRIK----------TSGTEGSITING 33 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~----------~~~~~G~i~i~G 33 (127)
|.+|+|| |||++.|++-. +.|+.|.+.+.+
T Consensus 9 G~pnvGK-STL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 9 GLPNVGK-STLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCTTSSH-HHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCCCCCH-HHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 6789999 99999999831 346778777765
No 212
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.30 E-value=0.0058 Score=47.89 Aligned_cols=33 Identities=6% Similarity=-0.094 Sum_probs=25.3
Q ss_pred CCCCCChHHHHHHHHhC-CCCCCCcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGR-IKTSGTEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g-l~~~~~~G~i~i~G~~~ 36 (127)
|++|||| ||++++|.. +....+.+++.+.+.|.
T Consensus 174 G~TGSGK-St~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 174 GTTGSGA-SVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp CCTTSSH-HHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred CCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 7899999 999998875 21556778888776664
No 213
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.24 E-value=0.0068 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=19.1
Q ss_pred CCC-CHHHHHHHH----HhcCC--ceee--cC
Q psy1497 105 LNL-SGLWGIGVF----NVLSP--LATY--EP 127 (127)
Q Consensus 105 ~~L-SgG~rqrv~----l~~~P--~vl~--~~ 127 (127)
.+| ||||+|||+ ++.+| ++|+ ||
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp 426 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEV 426 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 567 999999996 56799 8887 77
No 214
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.23 E-value=0.0084 Score=39.71 Aligned_cols=18 Identities=11% Similarity=-0.247 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+-.
T Consensus 9 ~G~~GsGK-sT~~~~L~~~ 26 (192)
T 1kht_A 9 TGVPGVGS-TTSSQLAMDN 26 (192)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999764
No 215
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.22 E-value=0.0084 Score=38.85 Aligned_cols=15 Identities=13% Similarity=-0.090 Sum_probs=13.8
Q ss_pred CCCCCCChHHHHHHHH
Q psy1497 2 RKNFGSDIDKYLLQTS 17 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l 17 (127)
-|.+|||| ||+.+.|
T Consensus 7 ~G~~GsGK-sT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGK-SEFAKLL 21 (179)
T ss_dssp ECCTTSCH-HHHHHHH
T ss_pred ECCCCCCH-HHHHHHH
Confidence 48899999 9999999
No 216
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.0038 Score=47.81 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=28.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
|.+|||| ||++..|++. +.+..++|.+.+.+.
T Consensus 105 G~~GsGK-TT~~~~LA~~-l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 105 GLQGSGK-TTTAAKLALY-YKGKGRRPLLVAADT 136 (425)
T ss_dssp CCTTSSH-HHHHHHHHHH-HHTTTCCEEEEECCS
T ss_pred CCCCCCH-HHHHHHHHHH-HHHcCCeEEEeeccc
Confidence 6789999 9999999999 788889999877774
No 217
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.18 E-value=0.0075 Score=42.80 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=16.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| |||++.++|.
T Consensus 8 G~~n~GK-STL~n~L~g~ 24 (256)
T 3iby_A 8 GNPNCGK-TTLFNALTNA 24 (256)
T ss_dssp ESTTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHHCC
Confidence 7899999 9999999997
No 218
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.17 E-value=0.0061 Score=42.99 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=22.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|.+|||| ||+.+.|+.. +. .+.+.+++-.
T Consensus 38 ~G~~GsGK-STla~~L~~~-l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 38 GGQSGAGK-TTIHRIKQKE-FQ--GNIVIIDGDS 67 (253)
T ss_dssp ESCGGGTT-HHHHHHHHHH-TT--TCCEEECGGG
T ss_pred ECCCCCCH-HHHHHHHHHh-cC--CCcEEEecHH
Confidence 47899999 9999999987 43 3456666643
No 219
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.15 E-value=0.009 Score=39.17 Aligned_cols=17 Identities=12% Similarity=-0.242 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+.
T Consensus 8 ~G~~GsGK-ST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGK-STWAREFIA 24 (181)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ecCCCCCH-HHHHHHHHh
Confidence 48999999 999999986
No 220
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.14 E-value=0.0091 Score=42.84 Aligned_cols=18 Identities=17% Similarity=-0.097 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||++.++|.
T Consensus 9 vG~~nvGK-STL~n~L~g~ 26 (272)
T 3b1v_A 9 IGNPNSGK-TSLFNLITGH 26 (272)
T ss_dssp ECCTTSSH-HHHHHHHHCC
T ss_pred ECCCCCCH-HHHHHHHHCC
Confidence 38999999 9999999996
No 221
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.09 E-value=0.006 Score=47.51 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCCCCChHHHHHHHHhCCC---------------------C----------------CCCcceEEECCEecChh---h-h
Q psy1497 3 KNFGSDIDKYLLQTSGRIK---------------------T----------------SGTEGSITINGHERNLS---Q-F 41 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~---------------------~----------------~~~~G~i~i~G~~~~~~---~-~ 41 (127)
|.+|||| |||+.+|..+. + ....+.++++|..+... . .
T Consensus 67 G~NGaGK-S~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~ 145 (517)
T 4ad8_A 67 GETGAGK-SIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA 145 (517)
T ss_dssp ESHHHHH-HHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred cCCCCCH-HHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence 7889999 99999994430 1 12345788888876542 2 2
Q ss_pred cceEEEEeeCccCCCC
Q psy1497 42 RKLSCYIMQDNQLHAN 57 (127)
Q Consensus 42 r~~ig~v~q~~~l~~~ 57 (127)
...+.+++|...+...
T Consensus 146 ~~li~i~~q~~~~~l~ 161 (517)
T 4ad8_A 146 QGRLTIHWQHSAVSLL 161 (517)
T ss_dssp TTTEEEESGGGGGTTT
T ss_pred hhheEEeCCchHHhcC
Confidence 3457888888666554
No 222
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.08 E-value=0.0096 Score=40.54 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|+||||| |||++.|..
T Consensus 7 ~GPSG~GK-~Tl~~~L~~ 23 (186)
T 1ex7_A 7 SGPSGTGK-STLLKKLFA 23 (186)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 48999999 999988863
No 223
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.08 E-value=0.011 Score=44.31 Aligned_cols=22 Identities=14% Similarity=-0.224 Sum_probs=18.7
Q ss_pred CCCHHHHHHHH----Hh---------cCCceee--cC
Q psy1497 106 NLSGLWGIGVF----NV---------LSPLATY--EP 127 (127)
Q Consensus 106 ~LSgG~rqrv~----l~---------~~P~vl~--~~ 127 (127)
.||+||||+++ |+ .+|+||+ ||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp 301 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDF 301 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCG
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCc
Confidence 79999999995 46 7999988 65
No 224
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.06 E-value=0.01 Score=38.71 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=13.8
Q ss_pred CCCCCChHHHHHHHHh
Q psy1497 3 KNFGSDIDKYLLQTSG 18 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~ 18 (127)
|++|||| ||++.+|.
T Consensus 30 G~NGsGK-Stil~Ai~ 44 (149)
T 1f2t_A 30 GQNGSGK-SSLLDAIL 44 (149)
T ss_dssp CCTTSSH-HHHHHHHH
T ss_pred CCCCCCH-HHHHHHHH
Confidence 7899999 99999886
No 225
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.05 E-value=0.0086 Score=39.67 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 7 ~G~~GsGK-sT~~~~L~~~ 24 (194)
T 1nks_A 7 TGIPGVGK-STVLAKVKEI 24 (194)
T ss_dssp EECTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999865
No 226
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.03 E-value=0.007 Score=47.25 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=25.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-|++|+|| |||+++|++. .. .+.|.+++.++
T Consensus 70 ~GppGtGK-TtLaraIa~~-~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 70 VGPPGVGK-THLARAVAGE-AR--VPFITASGSDF 100 (499)
T ss_dssp ECSSSSSH-HHHHHHHHHH-TT--CCEEEEEGGGG
T ss_pred ECCCCCCH-HHHHHHHHHH-hC--CCEEEEehhHH
Confidence 48999999 9999999998 53 67888887653
No 227
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.03 E-value=0.011 Score=39.08 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=15.8
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 10 ~G~~GsGK-sTla~~La~~ 27 (175)
T 1via_A 10 IGFMGSGK-STLARALAKD 27 (175)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999865
No 228
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.00 E-value=0.011 Score=39.19 Aligned_cols=16 Identities=6% Similarity=-0.199 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
-|..|||| ||+.+.|+
T Consensus 10 ~G~~GsGK-ST~~~~La 25 (186)
T 3cm0_A 10 LGPPGAGK-GTQASRLA 25 (186)
T ss_dssp ECCTTSCH-HHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHH
Confidence 47899999 99999998
No 229
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.99 E-value=0.0033 Score=44.43 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=20.0
Q ss_pred CCCCCChHHHHHHHHh---CCCCCCCcceE
Q psy1497 3 KNFGSDIDKYLLQTSG---RIKTSGTEGSI 29 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~---gl~~~~~~G~i 29 (127)
|++|||| ||+.+.|+ |+ ...+.|.+
T Consensus 16 G~~GsGK-sTla~~la~~lg~-~~~d~g~~ 43 (233)
T 3r20_A 16 GPAGTGK-SSVSRGLARALGA-RYLDTGAM 43 (233)
T ss_dssp CCTTSSH-HHHHHHHHHHHTC-EEEEHHHH
T ss_pred CCCCCCH-HHHHHHHHHHhCC-CcccCCcH
Confidence 7899999 99999998 55 44566655
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.96 E-value=0.0088 Score=40.55 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=21.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|.+|||| |||++.+++ .+..+.++++..+
T Consensus 26 ~G~~GsGK-Ttl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 26 YGPYASGK-TTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp ECSTTSSH-HHHHHHHHH---HHCSEEEEEESSC
T ss_pred ECCCCCCH-HHHHHHHHH---HcCCcEEEEECCC
Confidence 37899999 999999998 2334455565443
No 231
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.012 Score=37.75 Aligned_cols=17 Identities=12% Similarity=-0.167 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 10 G~~~~GK-ssli~~l~~~ 26 (172)
T 2erx_A 10 GAGGVGK-SSLVLRFVKG 26 (172)
T ss_dssp CCTTSSH-HHHHHHHHTC
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999874
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.88 E-value=0.012 Score=42.72 Aligned_cols=17 Identities=12% Similarity=-0.185 Sum_probs=16.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|.|.
T Consensus 15 G~~nvGK-STLln~L~g~ 31 (301)
T 1ega_A 15 GRPNVGK-STLLNKLLGQ 31 (301)
T ss_dssp CSSSSSH-HHHHHHHHTC
T ss_pred CCCCCCH-HHHHHHHHCC
Confidence 7899999 9999999997
No 233
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.87 E-value=0.012 Score=41.74 Aligned_cols=17 Identities=6% Similarity=-0.165 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|+|| |||++.++|.
T Consensus 12 G~~nvGK-TsL~n~l~g~ 28 (258)
T 3a1s_A 12 GCPNVGK-TSLFNALTGT 28 (258)
T ss_dssp CCTTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHHCC
Confidence 8899999 9999999996
No 234
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.84 E-value=0.0099 Score=42.25 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.++|++.
T Consensus 54 ~G~~GsGK-STl~~~La~~ 71 (250)
T 3nwj_A 54 VGMMGSGK-TTVGKIMARS 71 (250)
T ss_dssp ECSTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999999884
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.83 E-value=0.012 Score=40.11 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+.+
T Consensus 10 ~G~~GSGK-ST~~~~L~~l 27 (218)
T 1vht_A 10 TGGIGSGK-STVANAFADL 27 (218)
T ss_dssp ECCTTSCH-HHHHHHHHHT
T ss_pred ECCCCCCH-HHHHHHHHHc
Confidence 37899999 9999999864
No 236
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.82 E-value=0.014 Score=43.57 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=13.8
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
-|++|||| ||++.+|.
T Consensus 31 ~G~NGaGK-T~ileAI~ 46 (371)
T 3auy_A 31 IGENGSGK-SSIFEAVF 46 (371)
T ss_dssp EECTTSSH-HHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHH
Confidence 37899999 99998875
No 237
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.78 E-value=0.011 Score=42.24 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| |||++.++|.
T Consensus 10 G~~n~GK-STLin~l~g~ 26 (274)
T 3i8s_A 10 GNPNSGK-TTLFNQLTGS 26 (274)
T ss_dssp ECTTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999996
No 238
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.78 E-value=0.011 Score=39.27 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 11 ~G~~GsGK-ST~~~~L~~~ 28 (193)
T 2rhm_A 11 TGHPATGK-TTLSQALATG 28 (193)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999754
No 239
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.78 E-value=0.013 Score=38.71 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
-|.+|||| ||+.+.|+
T Consensus 17 ~G~~GsGK-st~~~~l~ 32 (180)
T 3iij_A 17 TGTPGVGK-TTLGKELA 32 (180)
T ss_dssp ECSTTSSH-HHHHHHHH
T ss_pred EeCCCCCH-HHHHHHHH
Confidence 37899999 99999998
No 240
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.76 E-value=0.011 Score=37.90 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++.
T Consensus 9 G~~~~GK-Ssli~~l~~~ 25 (166)
T 3q72_A 9 GAPGVGK-SALARIFGGV 25 (166)
T ss_dssp ESTTSSH-HHHHHHHCCC
T ss_pred CCCCCCH-HHHHHHHcCc
Confidence 7899999 9999999886
No 241
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.76 E-value=0.013 Score=38.98 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=15.8
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+-.
T Consensus 6 ~G~~GsGK-sT~~~~L~~~ 23 (197)
T 2z0h_A 6 EGIDGSGK-STQIQLLAQY 23 (197)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999865
No 242
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.73 E-value=0.011 Score=37.87 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 12 G~~~~GK-ssl~~~l~~~ 28 (168)
T 1z2a_A 12 GNGAVGK-SSMIQRYCKG 28 (168)
T ss_dssp CSTTSSH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999999865
No 243
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.71 E-value=0.0039 Score=45.44 Aligned_cols=32 Identities=6% Similarity=-0.070 Sum_probs=27.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
|..|+|| ||++..|++. +.+..++|.+.+.+.
T Consensus 105 G~~G~GK-TT~~~~la~~-~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 105 GVQGTGK-TTTAGKLAYF-YKKKGFKVGLVGADV 136 (297)
T ss_dssp CSSCSST-THHHHHHHHH-HHHTTCCEEEEECCC
T ss_pred CCCCCCH-HHHHHHHHHH-HHHCCCeEEEEecCC
Confidence 6789999 9999999998 777888998876664
No 244
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.011 Score=39.12 Aligned_cols=17 Identities=18% Similarity=-0.121 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| |||++.+++-
T Consensus 55 G~~g~GK-Ssll~~l~~~ 71 (193)
T 2ged_A 55 GPQNSGK-TSLLTLLTTD 71 (193)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999987
No 245
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.70 E-value=0.015 Score=37.60 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 11 G~~~vGK-Ssl~~~l~~~ 27 (175)
T 2nzj_A 11 GDPGVGK-TSLASLFAGK 27 (175)
T ss_dssp CCTTSSH-HHHHHHHHCC
T ss_pred CCCCccH-HHHHHHHhcC
Confidence 7899999 9999999886
No 246
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.69 E-value=0.0098 Score=37.88 Aligned_cols=17 Identities=12% Similarity=-0.236 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| |||++.+.+-
T Consensus 10 G~~~~GK-ssl~~~l~~~ 26 (166)
T 2ce2_X 10 GAGGVGK-SALTIQLIQN 26 (166)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 6799999 9999999765
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.68 E-value=0.014 Score=38.58 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 11 ~G~~GsGK-st~a~~La~~ 28 (185)
T 3trf_A 11 IGLMGAGK-TSVGSQLAKL 28 (185)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999754
No 248
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.65 E-value=0.015 Score=37.70 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=15.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 16 G~~~~GK-ssl~~~l~~~ 32 (181)
T 3tw8_B 16 GDSGVGK-SSLLLRFADN 32 (181)
T ss_dssp CCTTSCH-HHHHHHHCSC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 249
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.63 E-value=0.012 Score=37.53 Aligned_cols=17 Identities=12% Similarity=-0.285 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 11 G~~~~GK-ssl~~~l~~~ 27 (168)
T 1u8z_A 11 GSGGVGK-SALTLQFMYD 27 (168)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999865
No 250
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.62 E-value=0.016 Score=37.60 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.+-
T Consensus 15 G~~~~GK-ssl~~~l~~~ 31 (178)
T 2lkc_A 15 GHVDHGK-TTLLDAIRHS 31 (178)
T ss_dssp SCTTTTH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999874
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.62 E-value=0.015 Score=39.12 Aligned_cols=18 Identities=11% Similarity=-0.226 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 10 ~G~~GsGK-sT~~~~L~~~ 27 (213)
T 2plr_A 10 EGIDGSGK-SSQATLLKDW 27 (213)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999875
No 252
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.59 E-value=0.013 Score=37.42 Aligned_cols=17 Identities=6% Similarity=-0.162 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 8 G~~~~GK-Ssli~~l~~~ 24 (161)
T 2dyk_A 8 GRPNVGK-SSLFNRLLKK 24 (161)
T ss_dssp CCTTSSH-HHHHHHHHHC
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999876
No 253
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.58 E-value=0.013 Score=38.74 Aligned_cols=17 Identities=0% Similarity=-0.187 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 30 G~~~~GK-Ssli~~l~~~ 46 (195)
T 1svi_A 30 GRSNVGK-SSFINSLINR 46 (195)
T ss_dssp EBTTSSH-HHHHHHHHTC
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999886
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.58 E-value=0.012 Score=41.13 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=22.1
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|++|+|| |||.+++++. .... -+.+++.+
T Consensus 51 ~G~~GtGK-T~la~~la~~-~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 51 VGPPGTGK-TLLAKAIAGE-AKVP--FFTISGSD 80 (257)
T ss_dssp ECCTTSCH-HHHHHHHHHH-HTCC--EEEECSCS
T ss_pred ECcCCCCH-HHHHHHHHHH-cCCC--EEEEeHHH
Confidence 38899999 9999999987 4321 35666554
No 255
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.56 E-value=0.014 Score=38.50 Aligned_cols=17 Identities=12% Similarity=-0.156 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| |||++.+.+-
T Consensus 30 G~~~~GK-Ssli~~l~~~ 46 (195)
T 3pqc_A 30 GRSNVGK-SSLLNALFNR 46 (195)
T ss_dssp EBTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 9999999886
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.56 E-value=0.0034 Score=46.76 Aligned_cols=62 Identities=11% Similarity=-0.030 Sum_probs=34.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcceE-EECCEecChhhhcceEEEEeeCccCCCCCCHHHHHHH
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G~i-~i~G~~~~~~~~r~~ig~v~q~~~l~~~ltv~e~l~~ 66 (127)
|++|||| |||...++.. .....|.+ +++..........+.+|+.+++..++...++.+.+..
T Consensus 68 G~pGsGK-TtLal~la~~-~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 68 GPESSGK-TTVALHAVAN-AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp ESTTSSH-HHHHHHHHHH-HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH-HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 6899999 9998777654 33344554 4444332112222345555555444444567666554
No 257
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.53 E-value=0.018 Score=37.10 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++.
T Consensus 9 G~~~~GK-Ssli~~l~~~ 25 (169)
T 3q85_A 9 GESGVGK-STLAGTFGGL 25 (169)
T ss_dssp CSTTSSH-HHHHHHHHCC
T ss_pred CCCCCCH-HHHHHHHHhc
Confidence 7899999 9999999875
No 258
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.49 E-value=0.017 Score=37.66 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 8 ~G~~GsGK-sT~a~~La~~ 25 (173)
T 1e6c_A 8 VGARGCGM-TTVGRELARA 25 (173)
T ss_dssp ESCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999754
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.0029 Score=46.38 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=20.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI 29 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i 29 (127)
-|++|+|| ||+++++++. +.+..+.+
T Consensus 52 ~Gp~G~GK-Ttla~~la~~-l~~~~~~~ 77 (340)
T 1sxj_C 52 YGPPGTGK-TSTIVALARE-IYGKNYSN 77 (340)
T ss_dssp ECSSSSSH-HHHHHHHHHH-HHTTSHHH
T ss_pred ECCCCCCH-HHHHHHHHHH-HcCCCccc
Confidence 38999999 9999999998 55555543
No 260
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.45 E-value=0.018 Score=38.16 Aligned_cols=18 Identities=11% Similarity=-0.193 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 6 ~G~~GsGK-sT~~~~L~~~ 23 (195)
T 2pbr_A 6 EGIDGSGK-TTQAKKLYEY 23 (195)
T ss_dssp ECSTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999753
No 261
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.45 E-value=0.017 Score=38.71 Aligned_cols=18 Identities=6% Similarity=-0.389 Sum_probs=16.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 10 ~G~~GsGK-sT~~~~L~~~ 27 (204)
T 2v54_A 10 EGLDKSGK-TTQCMNIMES 27 (204)
T ss_dssp ECCTTSSH-HHHHHHHHHT
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999977
No 262
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.44 E-value=0.014 Score=37.19 Aligned_cols=17 Identities=12% Similarity=-0.261 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.+-
T Consensus 10 G~~~~GK-Ssli~~l~~~ 26 (167)
T 1kao_A 10 GSGGVGK-SALTVQFVTG 26 (167)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999988754
No 263
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.43 E-value=0.018 Score=38.46 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 16 ~G~~GsGK-STv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGK-TSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999998754
No 264
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.43 E-value=0.015 Score=37.27 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 10 G~~~~GK-ssli~~l~~~ 26 (167)
T 1c1y_A 10 GSGGVGK-SALTVQFVQG 26 (167)
T ss_dssp CSTTSSH-HHHHHHHHHC
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999764
No 265
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.42 E-value=0.015 Score=41.42 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|.+-
T Consensus 15 G~~g~GK-STLin~L~~~ 31 (274)
T 3t5d_A 15 GESGLGK-STLINSLFLT 31 (274)
T ss_dssp ECTTSSH-HHHHHHHSSS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999998876
No 266
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.40 E-value=0.019 Score=37.33 Aligned_cols=18 Identities=11% Similarity=-0.202 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 6 ~G~~GsGK-sT~a~~L~~~ 23 (168)
T 2pt5_A 6 IGFMCSGK-STVGSLLSRS 23 (168)
T ss_dssp ESCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999763
No 267
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.39 E-value=0.019 Score=40.34 Aligned_cols=17 Identities=6% Similarity=-0.232 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|+|-
T Consensus 28 G~~g~GK-SSlin~l~~~ 44 (247)
T 3lxw_A 28 GRTGAGK-SATGNSILGQ 44 (247)
T ss_dssp SSTTSSH-HHHHHHHHTS
T ss_pred CCCCCcH-HHHHHHHhCC
Confidence 7899999 9999999987
No 268
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.38 E-value=0.015 Score=38.38 Aligned_cols=17 Identities=0% Similarity=-0.171 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.+-
T Consensus 14 G~~~~GK-Ssli~~l~~~ 30 (208)
T 3clv_A 14 GESSVGK-SSIVLRLTKD 30 (208)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999876
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.38 E-value=0.0081 Score=41.39 Aligned_cols=31 Identities=13% Similarity=-0.122 Sum_probs=19.2
Q ss_pred CCCCCCChHHHHH-HHHhCCCCCCCcceEEECCE
Q psy1497 2 RKNFGSDIDKYLL-QTSGRIKTSGTEGSITINGH 34 (127)
Q Consensus 2 ~~~~GsGK~STLl-~~l~gl~~~~~~G~i~i~G~ 34 (127)
-|++|||| |||+ +++.+. .....+.+++...
T Consensus 29 ~G~~GsGK-Ttl~~~~~~~~-~~~~~~v~~~~~e 60 (247)
T 2dr3_A 29 SGGPGTGK-TIFSQQFLWNG-LKMGEPGIYVALE 60 (247)
T ss_dssp EECTTSSH-HHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred ECCCCCCH-HHHHHHHHHHH-HhcCCeEEEEEcc
Confidence 37899999 9995 455554 3444444555543
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.37 E-value=0.013 Score=42.27 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=20.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITING 33 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G 33 (127)
-|.+|||| ||+.+.|+.. .. .+.+.+++
T Consensus 39 ~G~sGsGK-STla~~L~~~-~~--~~~~~Is~ 66 (287)
T 1gvn_B 39 GGQPGSGK-TSLRSAIFEE-TQ--GNVIVIDN 66 (287)
T ss_dssp ECCTTSCT-HHHHHHHHHH-TT--TCCEEECT
T ss_pred ECCCCCCH-HHHHHHHHHH-hC--CCeEEEec
Confidence 48999999 9999999764 32 35566654
No 271
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.34 E-value=0.016 Score=38.74 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| ||+.+.|+..
T Consensus 15 G~~GsGK-ST~~~~La~~ 31 (203)
T 1uf9_A 15 GNIGSGK-STVAALLRSW 31 (203)
T ss_dssp ECTTSCH-HHHHHHHHHT
T ss_pred CCCCCCH-HHHHHHHHHC
Confidence 6899999 9999999853
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.34 E-value=0.0061 Score=41.29 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=16.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|.+|||| ||+++.|+.. +.
T Consensus 6 ~G~~GsGK-sTl~~~L~~~-l~ 25 (214)
T 1gtv_A 6 EGVDGAGK-RTLVEKLSGA-FR 25 (214)
T ss_dssp EEEEEEEH-HHHHHHHHHH-HH
T ss_pred EcCCCCCH-HHHHHHHHHH-HH
Confidence 37899999 9999999876 44
No 273
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.34 E-value=0.017 Score=37.97 Aligned_cols=17 Identities=6% Similarity=-0.181 Sum_probs=15.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 8 G~~~~GK-Ssli~~l~~~ 24 (190)
T 2cxx_A 8 GRSNVGK-STLIYRLTGK 24 (190)
T ss_dssp EBTTSSH-HHHHHHHHSC
T ss_pred CCCCCCH-HHHHHHHhCc
Confidence 6899999 9999999886
No 274
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.34 E-value=0.016 Score=37.26 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 13 G~~~~GK-Ssli~~l~~~ 29 (170)
T 1z0j_A 13 GDTGVGK-SSIMWRFVED 29 (170)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999999876
No 275
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.016 Score=37.14 Aligned_cols=17 Identities=0% Similarity=-0.253 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 10 G~~~~GK-ssli~~l~~~ 26 (170)
T 1ek0_A 10 GEAAVGK-SSIVLRFVSN 26 (170)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999998765
No 276
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.32 E-value=0.019 Score=38.51 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 8 ~G~~GsGK-st~~~~la~~ 25 (208)
T 3ake_A 8 DGPSASGK-SSVARRVAAA 25 (208)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999999774
No 277
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.23 E-value=0.017 Score=37.11 Aligned_cols=17 Identities=6% Similarity=-0.281 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 13 G~~~~GK-ssli~~l~~~ 29 (170)
T 1z08_A 13 GEGCVGK-TSLVLRYCEN 29 (170)
T ss_dssp CCTTSCH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999999865
No 278
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.23 E-value=0.017 Score=41.48 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|+|.
T Consensus 31 G~~~~GK-STlln~l~g~ 47 (315)
T 1jwy_B 31 GSQSSGK-SSVLENIVGR 47 (315)
T ss_dssp ECSSSSH-HHHHHHHHTS
T ss_pred cCCCCCH-HHHHHHHHCC
Confidence 6899999 9999999998
No 279
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.22 E-value=0.017 Score=37.48 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 14 G~~~~GK-Ssli~~l~~~ 30 (177)
T 1wms_A 14 GDGGVGK-SSLMNRYVTN 30 (177)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999865
No 280
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.19 E-value=0.018 Score=38.85 Aligned_cols=18 Identities=6% Similarity=-0.367 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 16 ~G~~GsGK-ST~~~~L~~~ 33 (212)
T 2wwf_A 16 EGLDRSGK-STQSKLLVEY 33 (212)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 36899999 9999999753
No 281
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.17 E-value=0.021 Score=38.99 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.8
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
-|++|||| ||++.+|.
T Consensus 29 ~G~NgsGK-Stil~ai~ 44 (203)
T 3qks_A 29 IGQNGSGK-SSLLDAIL 44 (203)
T ss_dssp ECCTTSSH-HHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHH
Confidence 37899999 99998774
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.15 E-value=0.022 Score=38.70 Aligned_cols=17 Identities=6% Similarity=-0.269 Sum_probs=14.8
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+.
T Consensus 6 ~G~~GsGK-sT~a~~L~~ 22 (216)
T 3fb4_A 6 MGLPGAGK-GTQAEQIIE 22 (216)
T ss_dssp ECSTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 48899999 999999954
No 283
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.12 E-value=0.018 Score=37.36 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| |||++.+.+-
T Consensus 15 G~~~~GK-Ssli~~l~~~ 31 (182)
T 1ky3_A 15 GDSGVGK-TSLMHRYVND 31 (182)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999988765
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.10 E-value=0.023 Score=38.12 Aligned_cols=17 Identities=12% Similarity=-0.158 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||+..|...
T Consensus 11 G~sGsGK-TTl~~~L~~~ 27 (169)
T 1xjc_A 11 GYKHSGK-TTLMEKWVAA 27 (169)
T ss_dssp CCTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHh
Confidence 6789999 9999888776
No 285
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.10 E-value=0.019 Score=37.91 Aligned_cols=17 Identities=12% Similarity=-0.236 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++-
T Consensus 28 G~~~~GK-Ssli~~l~~~ 44 (190)
T 3con_A 28 GAGGVGK-SALTIQLIQN 44 (190)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999999765
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.08 E-value=0.023 Score=37.58 Aligned_cols=17 Identities=6% Similarity=-0.236 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+.
T Consensus 9 ~G~~GsGK-sT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGK-GTQCARIVE 25 (196)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 47899999 999998864
No 287
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.08 E-value=0.016 Score=37.63 Aligned_cols=17 Identities=12% Similarity=-0.216 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 16 G~~~~GK-ssli~~l~~~ 32 (181)
T 2fn4_A 16 GGGGVGK-SALTIQFIQS 32 (181)
T ss_dssp ECTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 6889999 9999998865
No 288
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.08 E-value=0.019 Score=37.60 Aligned_cols=17 Identities=12% Similarity=-0.222 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 11 G~~~~GK-Ssli~~l~~~ 27 (189)
T 4dsu_A 11 GADGVGK-SALTIQLIQN 27 (189)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999865
No 289
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.07 E-value=0.016 Score=37.18 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 10 G~~~~GK-ssli~~l~~~ 26 (170)
T 1g16_A 10 GDSGVGK-SCLLVRFVED 26 (170)
T ss_dssp ESTTSSH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 6899999 9999999865
No 290
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.06 E-value=0.015 Score=39.11 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=19.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSI 29 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i 29 (127)
-|++|+|| |||++.++.. .......+
T Consensus 60 ~G~~GtGK-T~la~~i~~~-~~~~~~~~ 85 (202)
T 2w58_A 60 HGSFGVGK-TYLLAAIANE-LAKRNVSS 85 (202)
T ss_dssp ECSTTSSH-HHHHHHHHHH-HHTTTCCE
T ss_pred ECCCCCCH-HHHHHHHHHH-HHHcCCeE
Confidence 47899999 9999999886 44333344
No 291
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.05 E-value=0.02 Score=36.71 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 13 G~~~~GK-ssli~~l~~~ 29 (170)
T 1r2q_A 13 GESAVGK-SSLVLRFVKG 29 (170)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999998863
No 292
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.00 E-value=0.024 Score=36.76 Aligned_cols=17 Identities=12% Similarity=-0.124 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 13 G~~~~GK-ssl~~~l~~~ 29 (178)
T 2hxs_A 13 GDGASGK-TSLTTCFAQE 29 (178)
T ss_dssp CCTTSSH-HHHHHHHHGG
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 7899999 9999999875
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.98 E-value=0.021 Score=37.67 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHHhCCC---CCCCcc----eEEECCE
Q psy1497 3 KNFGSDIDKYLLQTSGRIK---TSGTEG----SITINGH 34 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~---~~~~~G----~i~i~G~ 34 (127)
|..|+|| |||++.+.+-. +.|+.| .+.+++.
T Consensus 23 G~~~vGK-SsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 23 GLDNAGK-TTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp ESTTSSH-HHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred CCCCCCH-HHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 6789999 99999999862 134556 4555544
No 294
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.94 E-value=0.021 Score=36.96 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 22 G~~~~GK-Ssli~~l~~~ 38 (179)
T 1z0f_A 22 GDMGVGK-SCLLHQFTEK 38 (179)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999865
No 295
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.92 E-value=0.015 Score=41.59 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=21.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSIT 30 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~ 30 (127)
-|++|+|| ||+.++++.. ..+..+.+.
T Consensus 53 ~G~~GtGK-t~la~~la~~-~~~~~~~~~ 79 (311)
T 4fcw_A 53 LGPTGVGK-TELAKTLAAT-LFDTEEAMI 79 (311)
T ss_dssp ESCSSSSH-HHHHHHHHHH-HHSCGGGEE
T ss_pred ECCCCcCH-HHHHHHHHHH-HcCCCcceE
Confidence 48999999 9999999998 666666443
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.91 E-value=0.027 Score=36.77 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=15.0
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|..|||| ||+-+.|+.
T Consensus 13 ~G~~GsGK-STva~~La~ 29 (168)
T 1zuh_A 13 IGFMGSGK-SSLAQELGL 29 (168)
T ss_dssp ESCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 37899999 999999975
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.91 E-value=0.022 Score=37.88 Aligned_cols=18 Identities=11% Similarity=-0.176 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 15 ~G~~GsGK-sT~~~~La~~ 32 (196)
T 2c95_A 15 VGGPGSGK-GTQCEKIVQK 32 (196)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999753
No 298
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.89 E-value=0.022 Score=37.35 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 18 G~~~~GK-Ssli~~l~~~ 34 (195)
T 3bc1_A 18 GDSGVGK-TSVLYQYTDG 34 (195)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999864
No 299
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.88 E-value=0.022 Score=36.64 Aligned_cols=17 Identities=12% Similarity=-0.181 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 14 G~~~~GK-ssl~~~l~~~ 30 (171)
T 1upt_A 14 GLDGAGK-TTILYRLQVG 30 (171)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999754
No 300
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.88 E-value=0.026 Score=38.32 Aligned_cols=18 Identities=6% Similarity=-0.333 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 6 ~G~~GsGK-sT~a~~L~~~ 23 (216)
T 3dl0_A 6 MGLPGAGK-GTQGERIVEK 23 (216)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48899999 9999999643
No 301
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.86 E-value=0.023 Score=38.37 Aligned_cols=16 Identities=0% Similarity=-0.384 Sum_probs=14.4
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|..|||| ||+.+.|+-
T Consensus 16 G~~GsGK-sT~~~~L~~ 31 (215)
T 1nn5_A 16 GVDRAGK-STQSRKLVE 31 (215)
T ss_dssp ESTTSSH-HHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHH
Confidence 6899999 999999984
No 302
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.86 E-value=0.029 Score=36.82 Aligned_cols=17 Identities=6% Similarity=-0.166 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 25 G~~~~GK-ssl~~~l~~~ 41 (186)
T 1ksh_A 25 GLDNAGK-TTILKKFNGE 41 (186)
T ss_dssp CSTTSSH-HHHHHHHTTC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999875
No 303
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.86 E-value=0.023 Score=40.46 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=15.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|+|.
T Consensus 33 G~~~~GK-SSLln~l~g~ 49 (299)
T 2aka_B 33 GGQSAGK-SSVLENFVGR 49 (299)
T ss_dssp EBTTSCH-HHHHHHHHTS
T ss_pred eCCCCCH-HHHHHHHHCC
Confidence 6799999 9999999997
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.83 E-value=0.018 Score=37.88 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=11.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 11 ~G~~GsGK-ST~a~~La~~ 28 (183)
T 2vli_A 11 NGPFGVGK-THTAHTLHER 28 (183)
T ss_dssp ECCC-----CHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 47899999 9999999743
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.83 E-value=0.026 Score=39.80 Aligned_cols=18 Identities=6% Similarity=-0.243 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||-+.|+..
T Consensus 7 ~G~~GSGK-STla~~La~~ 24 (253)
T 2ze6_A 7 YGPTCSGK-TDMAIQIAQE 24 (253)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCcCH-HHHHHHHHhc
Confidence 48999999 9999999865
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.82 E-value=0.028 Score=37.16 Aligned_cols=18 Identities=11% Similarity=-0.088 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+-+.|+..
T Consensus 8 ~G~~GsGK-sT~a~~La~~ 25 (184)
T 2iyv_A 8 VGLPGSGK-STIGRRLAKA 25 (184)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999998753
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.81 E-value=0.01 Score=45.52 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=26.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEec
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHER 36 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~~ 36 (127)
-|.+|||| ||++..|+.. +.+..++|.+-+.+.
T Consensus 103 vG~~GsGK-TTt~~kLA~~-l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 103 VGVQGSGK-TTTAGKLAYF-YKKRGYKVGLVAADV 135 (433)
T ss_dssp CCCTTSCH-HHHHHHHHHH-HHHTTCCEEEEEECC
T ss_pred ECCCCCCH-HHHHHHHHHH-HHHcCCeEEEEecCc
Confidence 37899999 9999999988 677788888765553
No 308
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.80 E-value=0.023 Score=36.92 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 19 G~~~~GK-Ssli~~l~~~ 35 (181)
T 2efe_B 19 GDVGAGK-SSLVLRFVKD 35 (181)
T ss_dssp CCTTSCH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999998865
No 309
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.77 E-value=0.023 Score=37.35 Aligned_cols=17 Identities=12% Similarity=-0.433 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+.
T Consensus 21 G~~~~GK-ssL~~~l~~~ 37 (198)
T 3t1o_A 21 GPGLSGK-TTNLKWIYSK 37 (198)
T ss_dssp CSTTSSH-HHHHHHHHHT
T ss_pred CCCCCCH-HHHHHHHHhh
Confidence 7889999 9999999987
No 310
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.77 E-value=0.029 Score=40.76 Aligned_cols=17 Identities=12% Similarity=-0.142 Sum_probs=15.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|.|.
T Consensus 17 G~~nvGK-STLin~l~g~ 33 (308)
T 3iev_A 17 GKPNVGK-STLLNNLLGT 33 (308)
T ss_dssp CSTTSSH-HHHHHHHHTS
T ss_pred CCCCCcH-HHHHHHHhCC
Confidence 7899999 9999999996
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.75 E-value=0.024 Score=37.74 Aligned_cols=18 Identities=11% Similarity=-0.210 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 18 ~G~~GsGK-sT~a~~L~~~ 35 (199)
T 2bwj_A 18 IGGPGSGK-GTQCEKLVEK 35 (199)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999754
No 312
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.024 Score=36.83 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 17 G~~~~GK-ssli~~l~~~ 33 (180)
T 2g6b_A 17 GDSGVGK-TCLLVRFKDG 33 (180)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 7899999 9999998865
No 313
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.72 E-value=0.024 Score=37.48 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 32 G~~~~GK-SsLi~~l~~~ 48 (193)
T 2oil_A 32 GESGVGK-TNLLSRFTRN 48 (193)
T ss_dssp SSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999999875
No 314
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.72 E-value=0.031 Score=38.32 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.+-
T Consensus 36 G~~~vGK-SsLin~l~~~ 52 (228)
T 2qu8_A 36 GAPNVGK-SSFMNIVSRA 52 (228)
T ss_dssp CSTTSSH-HHHHHHHTTT
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999886
No 315
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.72 E-value=0.024 Score=36.92 Aligned_cols=17 Identities=12% Similarity=-0.285 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 25 G~~~~GK-Ssli~~l~~~ 41 (187)
T 2a9k_A 25 GSGGVGK-SALTLQFMYD 41 (187)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhhC
Confidence 7899999 9999999864
No 316
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.66 E-value=0.026 Score=36.12 Aligned_cols=17 Identities=6% Similarity=-0.300 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 7 G~~~~GK-ssl~~~l~~~ 23 (164)
T 1r8s_A 7 GLDAAGK-TTILYKLKLG 23 (164)
T ss_dssp CSTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999998753
No 317
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.62 E-value=0.027 Score=37.73 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++.
T Consensus 30 G~~~vGK-SsLi~~l~~~ 46 (195)
T 3cbq_A 30 GESGVGK-STLAGTFGGL 46 (195)
T ss_dssp CSTTSSH-HHHHHHTCCE
T ss_pred CCCCCCH-HHHHHHHHhc
Confidence 7899999 9999999764
No 318
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.61 E-value=0.022 Score=36.86 Aligned_cols=17 Identities=6% Similarity=-0.242 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 21 G~~~~GK-ssli~~l~~~ 37 (179)
T 2y8e_A 21 GEQSVGK-TSLITRFMYD 37 (179)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 9999999754
No 319
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.61 E-value=0.03 Score=41.21 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=13.4
Q ss_pred CCCCCChHHHHHHHHh
Q psy1497 3 KNFGSDIDKYLLQTSG 18 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~ 18 (127)
|++|||| ||++.+|.
T Consensus 30 G~NGsGK-S~lleAi~ 44 (339)
T 3qkt_A 30 GQNGSGK-SSLLDAIL 44 (339)
T ss_dssp CCTTSSH-HHHHHHHH
T ss_pred CCCCCCH-HHHHHHHH
Confidence 7899999 99999763
No 320
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.59 E-value=0.026 Score=38.15 Aligned_cols=17 Identities=18% Similarity=-0.121 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 19 G~~g~GK-Tsl~~~l~~~ 35 (218)
T 1nrj_B 19 GPQNSGK-TSLLTLLTTD 35 (218)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 321
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.58 E-value=0.028 Score=37.12 Aligned_cols=18 Identities=17% Similarity=-0.180 Sum_probs=15.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 12 ~G~~GsGK-sT~~~~L~~~ 29 (194)
T 1qf9_A 12 LGGPGSGK-GTQCANIVRD 29 (194)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998743
No 322
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.55 E-value=0.029 Score=39.29 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|.|-
T Consensus 29 G~~g~GK-Stl~n~l~~~ 45 (260)
T 2xtp_A 29 GKTGTGK-SAAGNSILRK 45 (260)
T ss_dssp ECTTSCH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999876
No 323
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.55 E-value=0.033 Score=37.00 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 33 G~~~~GK-SsLi~~l~~~ 49 (192)
T 2il1_A 33 GSRGVGK-TSLMERFTDD 49 (192)
T ss_dssp CSTTSSH-HHHHHHHCC-
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 324
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.54 E-value=0.034 Score=36.74 Aligned_cols=17 Identities=6% Similarity=-0.140 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 24 G~~~~GK-Ssl~~~l~~~ 40 (199)
T 4bas_A 24 GLDNSGK-TTIINQVKPA 40 (199)
T ss_dssp CCTTSCH-HHHHHHHSCC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999885
No 325
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.51 E-value=0.027 Score=37.44 Aligned_cols=17 Identities=12% Similarity=-0.285 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 21 G~~~~GK-Ssli~~l~~~ 37 (206)
T 2bov_A 21 GSGGVGK-SALTLQFMYD 37 (206)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999764
No 326
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.50 E-value=0.021 Score=37.30 Aligned_cols=16 Identities=13% Similarity=-0.108 Sum_probs=14.4
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|..|+|| |||++.+.+
T Consensus 25 G~~~~GK-ssli~~l~~ 40 (183)
T 1moz_A 25 GLDGAGK-TTILYRLQI 40 (183)
T ss_dssp EETTSSH-HHHHHHTCC
T ss_pred CCCCCCH-HHHHHHHhc
Confidence 6789999 999999985
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.49 E-value=0.034 Score=37.40 Aligned_cols=18 Identities=6% Similarity=-0.234 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 26 ~G~~GsGK-ST~a~~La~~ 43 (201)
T 2cdn_A 26 LGPPGAGK-GTQAVKLAEK 43 (201)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999998753
No 328
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.48 E-value=0.034 Score=40.33 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.|-
T Consensus 14 G~~nvGK-STLln~l~g~ 30 (301)
T 1wf3_A 14 GKPNVGK-STLLNNLLGV 30 (301)
T ss_dssp CSTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999986
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.48 E-value=0.034 Score=37.31 Aligned_cols=17 Identities=6% Similarity=-0.154 Sum_probs=14.7
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|..|||| ||+.+.|+.
T Consensus 21 ~G~~GsGK-sT~~~~L~~ 37 (203)
T 1ukz_A 21 LGGPGAGK-GTQCEKLVK 37 (203)
T ss_dssp ECSTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 37899999 999998874
No 330
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.47 E-value=0.025 Score=37.35 Aligned_cols=17 Identities=6% Similarity=-0.179 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 28 G~~~~GK-Ssli~~l~~~ 44 (190)
T 2h57_A 28 GLDNSGK-TTIINKLKPS 44 (190)
T ss_dssp ECTTSSH-HHHHHHTSCG
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6789999 9999999876
No 331
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.46 E-value=0.033 Score=41.21 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+++.
T Consensus 174 G~~gvGK-STLin~L~~~ 190 (357)
T 2e87_A 174 GHPNVGK-STLLKALTTA 190 (357)
T ss_dssp CSTTSSH-HHHHHHHCSS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999997
No 332
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.44 E-value=0.03 Score=39.63 Aligned_cols=17 Identities=6% Similarity=-0.212 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|.+-
T Consensus 46 G~~g~GK-SSLin~l~~~ 62 (270)
T 1h65_A 46 GKGGVGK-SSTVNSIIGE 62 (270)
T ss_dssp ESTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6899999 9999999986
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.43 E-value=0.029 Score=38.55 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 13 ~G~~GsGK-sT~a~~La~~ 30 (227)
T 1zd8_A 13 MGAPGSGK-GTVSSRITTH 30 (227)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999843
No 334
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.42 E-value=0.038 Score=36.83 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-Ssli~~l~~~ 31 (203)
T 1zbd_A 15 GNSSVGK-TSFLFRYADD 31 (203)
T ss_dssp CSTTSSH-HHHHHHHHTC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 335
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.41 E-value=0.029 Score=37.43 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-Ssli~~l~~~ 31 (207)
T 1vg8_A 15 GDSGVGK-TSLMNQYVNK 31 (207)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999998875
No 336
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.40 E-value=0.013 Score=39.76 Aligned_cols=17 Identities=0% Similarity=-0.179 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.+-
T Consensus 36 G~~~~GK-Sslin~l~~~ 52 (223)
T 4dhe_A 36 GRSNAGK-STAINVLCNQ 52 (223)
T ss_dssp ESCHHHH-HHHHHHHTTC
T ss_pred cCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999987
No 337
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.36 E-value=0.03 Score=36.93 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 23 G~~~~GK-Ssli~~l~~~ 39 (196)
T 3tkl_A 23 GDSGVGK-SCLLLRFADD 39 (196)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 7899999 9999999875
No 338
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.025 Score=37.41 Aligned_cols=17 Identities=12% Similarity=-0.167 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-Ssli~~l~~~ 31 (199)
T 2gf0_A 15 GAGGVGK-SSLVLRFVKG 31 (199)
T ss_dssp ECTTSSH-HHHHHHHHHS
T ss_pred CCCCCcH-HHHHHHHHcC
Confidence 6889999 9999999864
No 339
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.33 E-value=0.031 Score=36.91 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 29 G~~~~GK-Ssli~~l~~~ 45 (189)
T 2gf9_A 29 GNSSVGK-TSFLFRYADD 45 (189)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999875
No 340
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.31 E-value=0.039 Score=35.86 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 49 ~G~~G~GK-T~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGK-TAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999988765
No 341
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.30 E-value=0.038 Score=38.27 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=15.1
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.++|++
T Consensus 22 ~G~~gsGK-st~~~~l~~ 38 (236)
T 1q3t_A 22 DGPASSGK-STVAKIIAK 38 (236)
T ss_dssp ECSSCSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 37899999 999999985
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.28 E-value=0.032 Score=38.14 Aligned_cols=18 Identities=6% Similarity=-0.285 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 11 ~G~~GsGK-sT~~~~La~~ 28 (222)
T 1zak_A 11 SGAPASGK-GTQCELIKTK 28 (222)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998743
No 343
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.035 Score=36.56 Aligned_cols=17 Identities=6% Similarity=-0.246 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 23 G~~~~GK-ssl~~~l~~~ 39 (187)
T 1zj6_A 23 GLDNAGK-TTILYQFSMN 39 (187)
T ss_dssp ESTTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6789999 9999999854
No 344
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.26 E-value=0.04 Score=39.24 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=16.8
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG 27 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G 27 (127)
|.+|+|| |||++.|.|. .....|
T Consensus 106 G~~~vGK-Sslin~l~~~-~~~~~~ 128 (262)
T 3cnl_A 106 GVPNTGK-STIINKLKGK-RASSVG 128 (262)
T ss_dssp ESTTSSH-HHHHHHHHTT-CC----
T ss_pred CCCCCCH-HHHHHHHhcc-cccccC
Confidence 6799999 9999999997 443333
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.25 E-value=0.027 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 17 G~~~~GK-Ssli~~l~~~ 33 (186)
T 2bme_A 17 GNAGTGK-SCLLHQFIEK 33 (186)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 9999998765
No 346
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.22 E-value=0.033 Score=36.30 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 12 G~~~~GK-ssl~~~l~~~ 28 (186)
T 1mh1_A 12 GDGAVGK-TCLLISYTTN 28 (186)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999888753
No 347
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.22 E-value=0.032 Score=36.80 Aligned_cols=17 Identities=6% Similarity=-0.267 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 27 G~~~~GK-Ssli~~l~~~ 43 (189)
T 1z06_A 27 GDSNVGK-TCLTYRFCAG 43 (189)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999998754
No 348
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.22 E-value=0.042 Score=37.06 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 32 G~~~~GK-SsLi~~l~~~ 48 (217)
T 2f7s_A 32 GDSGVGK-TTFLYRYTDN 48 (217)
T ss_dssp SCTTSSH-HHHHHHHHCS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 349
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.17 E-value=0.031 Score=36.68 Aligned_cols=17 Identities=6% Similarity=-0.246 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 28 G~~~~GK-Ssli~~l~~~ 44 (181)
T 2h17_A 28 GLDNAGK-TTILYQFSMN 44 (181)
T ss_dssp EETTSSH-HHHHHHHHTT
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6789999 9999999875
No 350
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.15 E-value=0.034 Score=39.62 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| ||+.+++++.
T Consensus 60 ~Gp~GtGK-T~la~~la~~ 77 (297)
T 3b9p_A 60 FGPPGNGK-TLLARAVATE 77 (297)
T ss_dssp ESSSSSCH-HHHHHHHHHH
T ss_pred ECcCCCCH-HHHHHHHHHH
Confidence 48999999 9999999976
No 351
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.13 E-value=0.046 Score=41.39 Aligned_cols=23 Identities=17% Similarity=-0.244 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHH----h----cCCceee--cC
Q psy1497 105 LNLSGLWGIGVFN----V----LSPLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l----~----~~P~vl~--~~ 127 (127)
..|||||||+++| + .+|++++ ||
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp 364 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEV 364 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESST
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCC
Confidence 5699999999963 4 4688877 66
No 352
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.12 E-value=0.042 Score=37.81 Aligned_cols=18 Identities=11% Similarity=-0.285 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+-.
T Consensus 6 ~G~~GsGK-sT~a~~La~~ 23 (223)
T 2xb4_A 6 FGPNGSGK-GTQGNLVKDK 23 (223)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999998743
No 353
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.10 E-value=0.042 Score=37.33 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 58 ~G~~G~GK-T~la~~l~~~ 75 (242)
T 3bos_A 58 WGPVKSGR-THLIHAACAR 75 (242)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999998765
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.08 E-value=0.041 Score=38.83 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=15.0
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+.
T Consensus 10 ~G~pGSGK-STla~~La~ 26 (260)
T 3a4m_A 10 TGLPGVGK-STFSKNLAK 26 (260)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHH
Confidence 47899999 999999875
No 355
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.08 E-value=0.039 Score=36.98 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 32 G~~~~GK-SsLi~~l~~~ 48 (200)
T 2o52_A 32 GSAGTGK-SCLLHQFIEN 48 (200)
T ss_dssp ESTTSSH-HHHHHHHHC-
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 6889999 9999999865
No 356
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.07 E-value=0.034 Score=40.10 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=22.4
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGH 34 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~ 34 (127)
-|++|+|| |||.+++++. .. .+-+.+++.
T Consensus 55 ~Gp~GtGK-T~la~ala~~-~~--~~~i~v~~~ 83 (301)
T 3cf0_A 55 YGPPGCGK-TLLAKAIANE-CQ--ANFISIKGP 83 (301)
T ss_dssp ECSSSSSH-HHHHHHHHHH-TT--CEEEEECHH
T ss_pred ECCCCcCH-HHHHHHHHHH-hC--CCEEEEEhH
Confidence 48999999 9999999987 43 455666643
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.06 E-value=0.043 Score=37.47 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 10 ~G~~GsGK-sT~a~~La~~ 27 (220)
T 1aky_A 10 IGPPGAGK-GTQAPNLQER 27 (220)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998754
No 358
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.05 E-value=0.036 Score=36.66 Aligned_cols=17 Identities=6% Similarity=-0.267 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 29 G~~~~GK-Ssli~~l~~~ 45 (188)
T 1zd9_A 29 GLQYSGK-TTFVNVIASG 45 (188)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999854
No 359
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.04 E-value=0.03 Score=37.43 Aligned_cols=17 Identities=6% Similarity=-0.363 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 31 G~~~~GK-Ssli~~l~~~ 47 (201)
T 3oes_A 31 GYRCVGK-TSLAHQFVEG 47 (201)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCcCH-HHHHHHHHhC
Confidence 6789999 9999999876
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.02 E-value=0.045 Score=35.69 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 25 G~~~~GK-Ssl~~~l~~~ 41 (183)
T 3kkq_A 25 GDGGVGK-SALTIQFFQK 41 (183)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999998864
No 361
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.01 E-value=0.037 Score=35.97 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-ssl~~~~~~~ 31 (182)
T 3bwd_D 15 GDGAVGK-TCLLISYTSN 31 (182)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999998764
No 362
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.00 E-value=0.037 Score=36.62 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 28 G~~~~GK-Ssli~~l~~~ 44 (191)
T 2a5j_A 28 GDTGVGK-SCLLLQFTDK 44 (191)
T ss_dssp SSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999999865
No 363
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.97 E-value=0.038 Score=37.59 Aligned_cols=17 Identities=6% Similarity=-0.423 Sum_probs=14.7
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|..|||| ||+.+.|+-
T Consensus 6 ~G~~GsGK-sT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGK-GTQAQFIME 22 (214)
T ss_dssp EESTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 37899999 999999865
No 364
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.97 E-value=0.049 Score=36.22 Aligned_cols=17 Identities=6% Similarity=-0.166 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 27 G~~~~GK-ssl~~~l~~~ 43 (201)
T 2q3h_A 27 GDGAVGK-TSLVVSYTTN 43 (201)
T ss_dssp CSTTSSH-HHHHHHHHC-
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999865
No 365
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.94 E-value=0.038 Score=36.61 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 30 G~~~~GK-Ssl~~~l~~~ 46 (194)
T 3reg_A 30 GDGAVGK-TCLLLAFSKG 46 (194)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999998875
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.92 E-value=0.032 Score=36.69 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 14 G~~~vGK-Ssli~~l~~~ 30 (184)
T 1m7b_A 14 GDSQCGK-TALLHVFAKD 30 (184)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999998865
No 367
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.032 Score=37.03 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 30 G~~~~GK-Ssli~~l~~~ 46 (192)
T 2fg5_A 30 GDTGVGK-SSIVCRFVQD 46 (192)
T ss_dssp ECTTSSH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 6889999 9999999765
No 368
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.91 E-value=0.041 Score=38.83 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.|-
T Consensus 43 G~~g~GK-SSLin~l~~~ 59 (262)
T 3def_A 43 GKGGVGK-SSTVNSLIGE 59 (262)
T ss_dssp ECTTSSH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999986
No 369
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=92.88 E-value=0.06 Score=40.07 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=21.1
Q ss_pred CCCCCCChHHHHH-HHHhCCCCCCCcceEEEC
Q psy1497 2 RKNFGSDIDKYLL-QTSGRIKTSGTEGSITIN 32 (127)
Q Consensus 2 ~~~~GsGK~STLl-~~l~gl~~~~~~G~i~i~ 32 (127)
-|+.|||| ||++ +.|... +. ..|.|.+.
T Consensus 18 EG~~GaGK-TT~~~~~L~~~-l~-~~g~vv~t 46 (341)
T 1osn_A 18 DGAYGIGK-TTAAEEFLHHF-AI-TPNRILLI 46 (341)
T ss_dssp EESSSSCT-THHHHHHHHTT-TT-SGGGEEEE
T ss_pred eCCCCCCH-HHHHHHHHHHH-Hh-hCCcEEEE
Confidence 47899999 9999 999987 44 44545443
No 370
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.039 Score=36.66 Aligned_cols=17 Identities=12% Similarity=-0.134 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 35 G~~~vGK-Ssli~~l~~~ 51 (196)
T 2atv_A 35 GRAGVGK-SALVVRFLTK 51 (196)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999998765
No 371
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.85 E-value=0.037 Score=41.51 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|++.
T Consensus 8 G~pnvGK-STL~n~L~~~ 24 (368)
T 2dby_A 8 GLPNVGK-STLFNALTRA 24 (368)
T ss_dssp CCSSSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999875
No 372
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.035 Score=36.75 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 30 G~~~~GK-Ssli~~l~~~ 46 (191)
T 3dz8_A 30 GNSSVGK-TSFLFRYADD 46 (191)
T ss_dssp ESTTSSH-HHHHHHHHHH
T ss_pred CCCCcCH-HHHHHHHhcC
Confidence 6789999 9999999875
No 373
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.77 E-value=0.046 Score=36.42 Aligned_cols=17 Identities=6% Similarity=-0.289 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 27 G~~~vGK-TsLi~~l~~~ 43 (196)
T 3llu_A 27 GLRRSGK-SSIQKVVFHK 43 (196)
T ss_dssp ESTTSSH-HHHHHHHHSC
T ss_pred CCCCCCH-HHHHHHHHhc
Confidence 6789999 9999999985
No 374
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.75 E-value=0.042 Score=36.64 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 35 G~~~~GK-Ssli~~l~~~ 51 (199)
T 2p5s_A 35 GDAAVGK-SSFLMRLCKN 51 (199)
T ss_dssp SSTTSSH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 7899999 9999999865
No 375
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.042 Score=36.11 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 22 G~~~~GK-ssli~~l~~~ 38 (195)
T 1x3s_A 22 GESGVGK-SSLLLRFTDD 38 (195)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 7899999 9999999865
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.74 E-value=0.036 Score=37.59 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| |||++.+++-
T Consensus 37 G~~g~GK-TTl~~~l~~~ 53 (221)
T 2wsm_A 37 GAIGSGK-TLLIERTIER 53 (221)
T ss_dssp ECTTSCH-HHHHHHHHHH
T ss_pred cCCCCCH-HHHHHHHHHH
Confidence 6789999 9999888764
No 377
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.71 E-value=0.05 Score=38.85 Aligned_cols=17 Identities=12% Similarity=-0.242 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+.
T Consensus 8 ~G~~GsGK-ST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGK-STWAREFIA 24 (301)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 48899999 999999985
No 378
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.71 E-value=0.051 Score=38.02 Aligned_cols=17 Identities=12% Similarity=-0.171 Sum_probs=14.8
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+.+.|+-
T Consensus 35 ~G~~GsGK-sT~a~~L~~ 51 (243)
T 3tlx_A 35 LGAPGSGK-GTQSLNLKK 51 (243)
T ss_dssp ECCTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 47899999 999999974
No 379
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.70 E-value=0.056 Score=37.84 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=16.3
Q ss_pred CCCCCCCChHHHHHHHHhCC
Q psy1497 1 MRKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl 20 (127)
+-|++|+|| |||.+.++..
T Consensus 49 l~G~~GtGK-T~la~~la~~ 67 (268)
T 2r62_A 49 LVGPPGTGK-TLLAKAVAGE 67 (268)
T ss_dssp CBCSSCSSH-HHHHHHHHHH
T ss_pred EECCCCCcH-HHHHHHHHHH
Confidence 358999999 9999999864
No 380
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.70 E-value=0.043 Score=38.07 Aligned_cols=18 Identities=6% Similarity=0.052 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 8 ~G~~g~GK-tt~~~~l~~~ 25 (241)
T 2ocp_A 8 EGNIAVGK-STFVKLLTKT 25 (241)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999865
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.69 E-value=0.051 Score=38.03 Aligned_cols=17 Identities=6% Similarity=-0.146 Sum_probs=15.0
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|.+|||| ||+-+.|+.
T Consensus 28 ~G~~GSGK-ST~a~~L~~ 44 (252)
T 1uj2_A 28 SGGTASGK-SSVCAKIVQ 44 (252)
T ss_dssp ECSTTSSH-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 37899999 999999876
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.66 E-value=0.054 Score=36.81 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 18 tG~~GSGK-STva~~L~~~ 35 (192)
T 2grj_A 18 TGKIGTGK-STVCEILKNK 35 (192)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999999754
No 383
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.036 Score=37.25 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 32 G~~~~GK-Ssli~~l~~~ 48 (207)
T 2fv8_A 32 GDGACGK-TCLLIVFSKD 48 (207)
T ss_dssp ECTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 6899999 9999999875
No 384
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.61 E-value=0.027 Score=40.73 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=12.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| ||+.+.|...
T Consensus 11 tG~sGSGK-STva~~L~~~ 28 (290)
T 1a7j_A 11 TGSSGAGT-STVKHTFDQI 28 (290)
T ss_dssp ESCC---C-CTHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47999999 9999998864
No 385
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.60 E-value=0.038 Score=36.97 Aligned_cols=17 Identities=24% Similarity=0.057 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-Ssli~~l~~~ 31 (206)
T 2bcg_Y 15 GNSGVGK-SCLLLRFSDD 31 (206)
T ss_dssp ESTTSSH-HHHHHHHHHC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6899999 9999999865
No 386
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.58 E-value=0.049 Score=36.91 Aligned_cols=17 Identities=18% Similarity=-0.023 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 41 G~~~vGK-Ssli~~l~~~ 57 (214)
T 2j1l_A 41 GDGGCGK-TSLLMVFADG 57 (214)
T ss_dssp ECTTSSH-HHHHHHHHC-
T ss_pred CcCCCCH-HHHHHHHHcC
Confidence 6889999 9999999874
No 387
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.56 E-value=0.055 Score=38.22 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||.+.++..
T Consensus 57 ~G~~GtGK-T~la~~la~~ 74 (285)
T 3h4m_A 57 YGPPGTGK-TLLAKAVATE 74 (285)
T ss_dssp ESSSSSSH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 48999999 9999999876
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.52 E-value=0.035 Score=36.11 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++-
T Consensus 14 G~~~vGK-Tsli~~l~~~ 30 (178)
T 2iwr_A 14 GDARSGK-SSLIHRFLTG 30 (178)
T ss_dssp CCGGGCH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7889999 9999988865
No 389
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.51 E-value=0.047 Score=36.53 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 27 G~~~~GK-Ssli~~l~~~ 43 (213)
T 3cph_A 27 GDSGVGK-SCLLVRFVED 43 (213)
T ss_dssp CSTTSSH-HHHHHHHHHC
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999865
No 390
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.48 E-value=0.047 Score=36.72 Aligned_cols=17 Identities=12% Similarity=-0.220 Sum_probs=15.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 14 G~~~~GK-Tsli~~l~~~ 30 (214)
T 2fh5_B 14 GLCDSGK-TLLFVRLLTG 30 (214)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999998864
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.46 E-value=0.048 Score=36.40 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|.+|+|| |||++.+.|
T Consensus 13 G~~~vGK-SsL~~~~~~ 28 (192)
T 2cjw_A 13 GEQGVGK-STLANIFAG 28 (192)
T ss_dssp CSTTSSH-HHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHhc
Confidence 7899999 999999986
No 392
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.40 E-value=0.057 Score=39.03 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||++.++..
T Consensus 43 ~G~~GtGK-T~la~~i~~~ 60 (324)
T 1l8q_A 43 YGSVGTGK-THLLQAAGNE 60 (324)
T ss_dssp ECSSSSSH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 48899999 9999999976
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.33 E-value=0.054 Score=35.26 Aligned_cols=16 Identities=6% Similarity=-0.309 Sum_probs=14.2
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|..|+|| |||++.+.+
T Consensus 13 G~~~~GK-Ssli~~l~~ 28 (181)
T 3t5g_A 13 GYRSVGK-SSLTIQFVE 28 (181)
T ss_dssp ESTTSSH-HHHHHHHHH
T ss_pred CcCCCCH-HHHHHHHHc
Confidence 6789999 999999883
No 394
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.31 E-value=0.048 Score=35.46 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 49 ~G~~G~GK-T~la~~~~~~ 66 (187)
T 2p65_A 49 LGDPGVGK-TAIVEGLAIK 66 (187)
T ss_dssp ESCGGGCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999988765
No 395
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.23 E-value=0.053 Score=35.88 Aligned_cols=17 Identities=12% Similarity=-0.166 Sum_probs=14.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 28 G~~~vGK-TsLi~~l~~~ 44 (187)
T 3c5c_A 28 GRRGAGK-SALTVKFLTK 44 (187)
T ss_dssp CCTTSSH-HHHHHHHHHS
T ss_pred CCCCCcH-HHHHHHHHhC
Confidence 7899999 9999888754
No 396
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.21 E-value=0.045 Score=36.95 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=14.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 33 G~~~vGK-SsLi~~l~~~ 49 (201)
T 2ew1_A 33 GNAGVGK-TCLVRRFTQG 49 (201)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHHhC
Confidence 6789999 9999988754
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.20 E-value=0.055 Score=38.76 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=14.3
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
-|.+|||| ||+.+.|+
T Consensus 81 ~G~~GSGK-STva~~La 96 (281)
T 2f6r_A 81 TGISGSGK-SSVAQRLK 96 (281)
T ss_dssp EECTTSCH-HHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHH
Confidence 37899999 99999997
No 398
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.10 E-value=0.059 Score=35.83 Aligned_cols=17 Identities=6% Similarity=-0.300 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 36 G~~~vGK-SsLi~~l~~~ 52 (192)
T 2b6h_A 36 GLDAAGK-TTILYKLKLG 52 (192)
T ss_dssp ESTTSSH-HHHHHHHCSS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 6789999 9999999764
No 399
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.08 E-value=0.048 Score=36.89 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 35 G~~~vGK-SsLi~~l~~~ 51 (205)
T 1gwn_A 35 GDSQCGK-TALLHVFAKD 51 (205)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6889999 9999999876
No 400
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.05 E-value=0.037 Score=36.12 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=4.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 15 G~~~~GK-ssl~~~l~~~ 31 (183)
T 2fu5_C 15 GDSGVGK-TCVLFRFSED 31 (183)
T ss_dssp CCCCC-------------
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999998865
No 401
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.03 E-value=0.058 Score=44.32 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=22.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
-|++|||| |||.++|++. .... -+.+++.+
T Consensus 244 ~Gp~GtGK-TtLarala~~-l~~~--~i~v~~~~ 273 (806)
T 1ypw_A 244 YGPPGTGK-TLIARAVANE-TGAF--FFLINGPE 273 (806)
T ss_dssp CSCTTSSH-HHHHHHHHHT-TTCE--EEEEEHHH
T ss_pred ECcCCCCH-HHHHHHHHHH-cCCc--EEEEEchH
Confidence 48999999 9999999998 5432 35665543
No 402
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.03 E-value=0.073 Score=35.76 Aligned_cols=18 Identities=6% Similarity=-0.068 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 51 ~G~~G~GK-T~l~~~~~~~ 68 (250)
T 1njg_A 51 SGTRGVGK-TSIARLLAKG 68 (250)
T ss_dssp ECSTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999988754
No 403
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.03 E-value=0.07 Score=37.01 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| ||+.+.++..
T Consensus 45 ~G~~GtGK-T~la~~la~~ 62 (262)
T 2qz4_A 45 LGPPGCGK-TLLAKAVATE 62 (262)
T ss_dssp ESCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48899999 9999999875
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.01 E-value=0.06 Score=36.78 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| ||+.+.|+..
T Consensus 12 G~~GsGK-sT~a~~La~~ 28 (217)
T 3be4_A 12 GAPGSGK-GTQCEFIKKE 28 (217)
T ss_dssp ECTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 7889999 9999999754
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.98 E-value=0.071 Score=36.81 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+-.
T Consensus 22 ~G~~GsGK-sT~a~~La~~ 39 (233)
T 1ak2_A 22 LGPPGAGK-GTQAPKLAKN 39 (233)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999754
No 406
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.96 E-value=0.05 Score=36.36 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 32 G~~~~GK-Ssli~~l~~~ 48 (201)
T 2gco_A 32 GDGACGK-TCLLIVFSKD 48 (201)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 6889999 9999999874
No 407
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.90 E-value=0.03 Score=37.82 Aligned_cols=17 Identities=6% Similarity=-0.177 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 18 G~~~~GK-Ssli~~l~~~ 34 (218)
T 4djt_A 18 GDGGVGK-TTYINRVLDG 34 (218)
T ss_dssp CCTTSSH-HHHHCBCTTC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999998865
No 408
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.88 E-value=0.042 Score=38.68 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|+..
T Consensus 30 eG~~GsGK-ST~~~~L~~~ 47 (263)
T 1p5z_B 30 EGNIAAGK-STFVNILKQL 47 (263)
T ss_dssp ECSTTSSH-HHHHTTTGGG
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999999876
No 409
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.82 E-value=0.048 Score=35.89 Aligned_cols=17 Identities=6% Similarity=-0.314 Sum_probs=14.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 29 G~~~~GK-ssli~~l~~~ 45 (189)
T 2x77_A 29 GLDNAGK-TSILYRLHLG 45 (189)
T ss_dssp EETTSSH-HHHHHHTCCS
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 9999999654
No 410
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.78 E-value=0.1 Score=42.15 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=16.4
Q ss_pred CCCCCChHHHHHHHHhCCC
Q psy1497 3 KNFGSDIDKYLLQTSGRIK 21 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~ 21 (127)
|.+|+|| |||+|.|+|..
T Consensus 76 G~~naGK-SSLlNaLlg~~ 93 (695)
T 2j69_A 76 GDMKRGK-STFLNALIGEN 93 (695)
T ss_dssp CCTTSCH-HHHHHHHHTSS
T ss_pred CCCCCCH-HHHHHHHhCCC
Confidence 7899999 99999999973
No 411
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.64 E-value=0.056 Score=39.91 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|||| |||++.|+|.
T Consensus 38 G~~~~GK-SSLln~L~g~ 54 (353)
T 2x2e_A 38 GGQSAGK-SSVLENFVGR 54 (353)
T ss_dssp CBTTSSH-HHHHHTTTTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999997
No 412
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.57 E-value=0.059 Score=35.60 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 25 G~~~~GK-ssli~~l~~~ 41 (194)
T 2atx_A 25 GDGAVGK-TCLLMSYAND 41 (194)
T ss_dssp ECTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6789999 9999998864
No 413
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.56 E-value=0.065 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||++++++.
T Consensus 136 ~Gp~G~GK-TtLa~aia~~ 153 (440)
T 2z4s_A 136 YGGVGLGK-THLLQSIGNY 153 (440)
T ss_dssp ECSSSSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48899999 9999999986
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.39 E-value=0.092 Score=36.23 Aligned_cols=18 Identities=6% Similarity=-0.208 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|...
T Consensus 12 eG~~gsGK-sT~~~~l~~~ 29 (213)
T 4edh_A 12 EGPEGAGK-STNRDYLAER 29 (213)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998765
No 415
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.37 E-value=0.1 Score=37.56 Aligned_cols=17 Identities=6% Similarity=-0.111 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||+|.|.|.
T Consensus 127 G~~nvGK-SsliN~l~~~ 143 (282)
T 1puj_A 127 GIPNVGK-STLINRLAKK 143 (282)
T ss_dssp ESTTSSH-HHHHHHHHTS
T ss_pred ecCCCch-HHHHHHHhcC
Confidence 6789999 9999999997
No 416
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.35 E-value=0.037 Score=36.79 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 27 G~~~~GK-ssli~~l~~~ 43 (208)
T 2yc2_C 27 GEATVGK-SALISMFTSK 43 (208)
T ss_dssp ------------------
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7889999 9999988765
No 417
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.33 E-value=0.072 Score=38.98 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=21.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCC--cceEEEC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGT--EGSITIN 32 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~--~G~i~i~ 32 (127)
-|+.|+|| |||++.+++. ..+. ..-+.++
T Consensus 50 ~G~~G~GK-Ttl~~~l~~~-~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 50 LGRPGTGK-TVTLRKLWEL-YKDKTTARFVYIN 80 (389)
T ss_dssp ECCTTSSH-HHHHHHHHHH-HTTSCCCEEEEEE
T ss_pred ECCCCCCH-HHHHHHHHHH-HhhhcCeeEEEEe
Confidence 47899999 9999999987 5544 2344554
No 418
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.098 Score=35.84 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.|.
T Consensus 44 G~~~vGK-SSLl~r~~~~ 60 (211)
T 2g3y_A 44 GEQGVGK-STLANIFAGV 60 (211)
T ss_dssp CCTTSSH-HHHHHHHHCC
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999999874
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.28 E-value=0.081 Score=35.90 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++-++.-
T Consensus 45 G~~gvGK-Ttl~~~l~~~ 61 (226)
T 2hf9_A 45 GAIGSGK-TLLIEKLIDN 61 (226)
T ss_dssp ESTTSSH-HHHHHHHHHH
T ss_pred cCCCCCH-HHHHHHHHHH
Confidence 6789999 9999877754
No 420
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.23 E-value=0.077 Score=39.43 Aligned_cols=23 Identities=35% Similarity=0.160 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHH----------hcC-Cceee--cC
Q psy1497 105 LNLSGLWGIGVFN----------VLS-PLATY--EP 127 (127)
Q Consensus 105 ~~LSgG~rqrv~l----------~~~-P~vl~--~~ 127 (127)
..||+||+||++| +.+ |++|+ ||
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp 314 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEP 314 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEST
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 6899999999842 457 89877 76
No 421
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.23 E-value=0.098 Score=34.73 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=15.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 44 ~G~~G~GK-T~l~~~l~~~ 61 (226)
T 2chg_A 44 SGPPGTGK-TATAIALARD 61 (226)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999988764
No 422
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.08 Score=35.99 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 20 G~~~vGK-Ssli~~l~~~ 36 (223)
T 3cpj_B 20 GDSGVGK-SNLLSRFTKN 36 (223)
T ss_dssp SCTTSSH-HHHHHHHHHC
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999999875
No 423
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.14 E-value=0.077 Score=40.53 Aligned_cols=17 Identities=0% Similarity=-0.167 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|+|-
T Consensus 30 G~~nvGK-STL~n~l~~~ 46 (456)
T 4dcu_A 30 GRPNVGK-STIFNRIAGE 46 (456)
T ss_dssp CSSSSSH-HHHHHHHEEE
T ss_pred CCCCCcH-HHHHHHHhCC
Confidence 7899999 9999999985
No 424
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.10 E-value=0.082 Score=41.61 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||+|.|.|.
T Consensus 72 G~~n~GK-STLIN~Llg~ 88 (550)
T 2qpt_A 72 GQYSTGK-TSFIQYLLEQ 88 (550)
T ss_dssp EBTTSCH-HHHHHHHHTS
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999987
No 425
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.09 E-value=0.077 Score=41.13 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=16.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||.+++++.
T Consensus 55 ~GppGtGK-T~Laraia~~ 72 (476)
T 2ce7_A 55 VGPPGTGK-TLLARAVAGE 72 (476)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48999999 9999999986
No 426
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.06 E-value=0.084 Score=35.80 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 34 G~~~vGK-SsL~~~l~~~ 50 (214)
T 3q3j_B 34 GDVQCGK-TAMLQVLAKD 50 (214)
T ss_dssp CSTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhcC
Confidence 7899999 9999988764
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.04 E-value=0.1 Score=35.33 Aligned_cols=18 Identities=0% Similarity=-0.132 Sum_probs=15.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 9 ~G~~gsGk-st~~~~l~~~ 26 (219)
T 2h92_A 9 DGPAAAGK-STIAKRVASE 26 (219)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 37899999 9999998764
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.99 E-value=0.082 Score=39.63 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.++|++.
T Consensus 30 ~G~~G~GK-TTl~~~la~~ 47 (359)
T 2ga8_A 30 VGSPGSGK-STIAEELCQI 47 (359)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 37899999 9999999885
No 429
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.97 E-value=0.073 Score=35.66 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 36 G~~~vGK-Ssli~~l~~~ 52 (201)
T 2hup_A 36 GDASVGK-TCVVQRFKTG 52 (201)
T ss_dssp ECTTSSH-HHHHHHHHHS
T ss_pred CcCCCCH-HHHHHHHhhC
Confidence 6789999 9999998765
No 430
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.83 E-value=0.021 Score=43.75 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=24.3
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcc-eEEECCEecCh
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSGTEG-SITINGHERNL 38 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~~~G-~i~i~G~~~~~ 38 (127)
|.+|+|| |||+..+++. ..+..| .|.+.+.+...
T Consensus 210 G~pG~GK-Ttl~l~ia~~-~~~~~g~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 210 ARPSVGK-TAFALNIAQN-VATKTNENVAIFSLEMSA 244 (454)
T ss_dssp CCTTSCH-HHHHHHHHHH-HHHHSSCCEEEEESSSCH
T ss_pred CCCCCCH-HHHHHHHHHH-HHHhCCCcEEEEECCCCH
Confidence 7899999 9999888887 554445 67665555443
No 431
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.80 E-value=0.074 Score=38.68 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.+++.
T Consensus 51 ~G~~G~GK-Ttl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGK-TAVVKFVLSK 68 (386)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999986
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.72 E-value=0.12 Score=36.13 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|...
T Consensus 27 ~G~~g~GK-st~~~~l~~~ 44 (223)
T 3ld9_A 27 EGIDGSGK-TTQSHLLAEY 44 (223)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998865
No 433
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.65 E-value=0.12 Score=36.43 Aligned_cols=18 Identities=11% Similarity=-0.175 Sum_probs=15.8
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||.+.++..
T Consensus 70 ~G~~GtGK-T~la~~ia~~ 87 (272)
T 1d2n_A 70 EGPPHSGK-TALAAKIAEE 87 (272)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 48899999 9999999865
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.65 E-value=0.082 Score=35.45 Aligned_cols=17 Identities=6% Similarity=-0.166 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 16 G~~~~GK-Tsli~~l~~~ 32 (212)
T 2j0v_A 16 GDGAVGK-TCMLICYTSN 32 (212)
T ss_dssp ESTTSSH-HHHHHHHHHS
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 6889999 9999988754
No 435
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.64 E-value=0.11 Score=37.49 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| ||+++.++..
T Consensus 64 ~G~~G~GK-T~la~~la~~ 81 (353)
T 1sxj_D 64 YGPPGTGK-TSTILALTKE 81 (353)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48899999 9999999876
No 436
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.61 E-value=0.12 Score=37.35 Aligned_cols=17 Identities=12% Similarity=-0.162 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|+.|+|| |||++.+.+-
T Consensus 10 G~~~vGK-SSLi~~l~~~ 26 (307)
T 3r7w_A 10 GRSGSGK-SSMRSIIFSN 26 (307)
T ss_dssp CCTTSSH-HHHHHHHHSC
T ss_pred CCCCCCH-HHHHHHHHhC
Confidence 7899999 9999997664
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.58 E-value=0.09 Score=36.76 Aligned_cols=18 Identities=17% Similarity=-0.187 Sum_probs=12.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|...
T Consensus 31 eG~~GsGK-sT~~~~l~~~ 48 (227)
T 3v9p_A 31 EGIDGAGK-TTHLQWFCDR 48 (227)
T ss_dssp ECCC---C-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998765
No 438
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.48 E-value=0.13 Score=35.25 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.-|||| ||+++.|.-.
T Consensus 9 G~dGsGK-sTq~~~L~~~ 25 (205)
T 4hlc_A 9 GPEGSGK-TTVINEVYHR 25 (205)
T ss_dssp CCTTSCH-HHHHHHHHHH
T ss_pred CCCCCcH-HHHHHHHHHH
Confidence 6789999 9999999876
No 439
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.44 E-value=0.098 Score=39.04 Aligned_cols=17 Identities=0% Similarity=-0.248 Sum_probs=15.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||+|.|.+.
T Consensus 169 G~~nvGK-StliN~L~~~ 185 (369)
T 3ec1_A 169 GCTNVGK-STFINRIIEE 185 (369)
T ss_dssp CCTTSSH-HHHHHHHHHH
T ss_pred cCCCCch-HHHHHHHHhh
Confidence 7899999 9999999975
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.39 E-value=0.11 Score=34.84 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=13.8
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|..|+|| |||++.+.+
T Consensus 37 G~~~~GK-SsLi~~l~~ 52 (204)
T 4gzl_A 37 GDGAVGK-TCLLISYTT 52 (204)
T ss_dssp ESTTSSH-HHHHHHHHH
T ss_pred CcCCCCH-HHHHHHHHh
Confidence 6789999 999988874
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.37 E-value=0.14 Score=32.71 Aligned_cols=18 Identities=6% Similarity=-0.210 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |++.+.|...
T Consensus 30 ~G~~GtGK-t~lA~~i~~~ 47 (145)
T 3n70_A 30 YGAPGTGR-MTGARYLHQF 47 (145)
T ss_dssp ESSTTSSH-HHHHHHHHHS
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 47899999 9999999876
No 442
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.34 E-value=0.13 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|+++|+..
T Consensus 158 ~G~~GtGK-T~La~aia~~ 175 (308)
T 2qgz_A 158 YGDMGIGK-SYLLAAMAHE 175 (308)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48999999 9999998875
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.33 E-value=0.12 Score=38.12 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|+..
T Consensus 86 G~~G~GK-STl~~~L~~~ 102 (355)
T 3p32_A 86 GVPGVGK-STAIEALGMH 102 (355)
T ss_dssp CCTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 6899999 9999988754
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.27 E-value=0.13 Score=36.45 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |++.+.++..
T Consensus 56 ~G~~GtGK-T~la~~la~~ 73 (310)
T 1ofh_A 56 IGPTGVGK-TEIARRLAKL 73 (310)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48899999 9999999876
No 445
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.26 E-value=0.11 Score=39.19 Aligned_cols=17 Identities=0% Similarity=-0.052 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+++|| |||++.|++-
T Consensus 7 G~pnvGK-STL~n~L~~~ 23 (397)
T 1wxq_A 7 GKPNVGK-STFFSAATLV 23 (397)
T ss_dssp ECTTSSH-HHHHHHHHC-
T ss_pred CCCCCCH-HHHHHHHHCC
Confidence 6789999 9999999986
No 446
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=90.22 E-value=0.14 Score=38.54 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=15.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|++.
T Consensus 15 G~~~~GK-STLi~~L~~~ 31 (403)
T 3sjy_A 15 GHVDHGK-TTLVQAITGI 31 (403)
T ss_dssp CSTTSSH-HHHHHHHHSC
T ss_pred CCCCCCH-HHHHHHHhCc
Confidence 6789999 9999999985
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.19 E-value=0.099 Score=39.58 Aligned_cols=18 Identities=11% Similarity=-0.128 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|.+|||| ||+.+.|+..
T Consensus 264 ~G~pGSGK-STla~~L~~~ 281 (416)
T 3zvl_A 264 VGFPGAGK-STFIQEHLVS 281 (416)
T ss_dssp ESCTTSSH-HHHHHHHTGG
T ss_pred ECCCCCCH-HHHHHHHHHh
Confidence 48899999 9999998754
No 448
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.17 E-value=0.12 Score=37.22 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+.|+..
T Consensus 42 ~GppGtGK-T~la~aiA~~ 59 (293)
T 3t15_A 42 WGGKGQGK-SFQCELVFRK 59 (293)
T ss_dssp EECTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999865
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.12 E-value=0.14 Score=37.34 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=16.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |+|.+.++..
T Consensus 51 ~GppGtGK-T~la~ala~~ 68 (322)
T 1xwi_A 51 FGPPGTGK-SYLAKAVATE 68 (322)
T ss_dssp ESSSSSCH-HHHHHHHHHH
T ss_pred ECCCCccH-HHHHHHHHHH
Confidence 48999999 9999999976
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.10 E-value=0.12 Score=36.30 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|||| ||+.+.|...
T Consensus 33 eG~~GsGK-sT~~~~l~~~ 50 (236)
T 3lv8_A 33 EGLEGAGK-STAIQVVVET 50 (236)
T ss_dssp EESTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999998765
No 451
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.51 E-value=0.058 Score=36.05 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=14.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|..|+|| |||++.+.+-
T Consensus 36 ~G~~~~GK-Ssli~~l~~~ 53 (204)
T 3th5_A 36 VGDGAVGK-TCLLISYTTN 53 (204)
Confidence 37889999 9999888754
No 452
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.91 E-value=0.15 Score=37.03 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+.++..
T Consensus 57 ~GppGtGK-T~la~aia~~ 74 (322)
T 3eie_A 57 YGPPGTGK-SYLAKAVATE 74 (322)
T ss_dssp ECSSSSCH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 48999999 9999999876
No 453
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=89.90 E-value=0.14 Score=37.84 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=15.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|+-|||| ||+++.|+-. +.
T Consensus 10 EG~dGsGK-TT~~~~La~~-L~ 29 (331)
T 1e2k_A 10 DGPHGMGK-TTTTQLLVAL-GS 29 (331)
T ss_dssp CSCTTSSH-HHHHHHHTC----
T ss_pred ECCCCCCH-HHHHHHHHHH-hh
Confidence 47889999 9999999987 44
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.89 E-value=0.13 Score=35.73 Aligned_cols=21 Identities=0% Similarity=-0.357 Sum_probs=17.5
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~ 24 (127)
-|..|||| ||+.+.|... +..
T Consensus 11 eG~~g~GK-st~~~~l~~~-l~~ 31 (216)
T 3tmk_A 11 EGLDRTGK-TTQCNILYKK-LQP 31 (216)
T ss_dssp EECSSSSH-HHHHHHHHHH-HCS
T ss_pred ECCCCCCH-HHHHHHHHHH-hcc
Confidence 37899999 9999999887 544
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.88 E-value=0.13 Score=35.52 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|||| ||+.+.|...
T Consensus 10 G~~gsGK-sT~~~~l~~~ 26 (213)
T 4tmk_A 10 GLEGAGK-TTARNVVVET 26 (213)
T ss_dssp ECTTSCH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 6889999 9999998876
No 456
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=89.88 E-value=0.14 Score=37.88 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=19.9
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcceEEE
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITI 31 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~~~G~i~i 31 (127)
-|+-|||| ||+++.|+-. +.. .+.|.+
T Consensus 13 EG~dGaGK-TT~~~~La~~-L~~-~~~v~~ 39 (334)
T 1p6x_A 13 DGVYGIGK-STTGRVMASA-ASG-GSPTLY 39 (334)
T ss_dssp ECSTTSSH-HHHHHHHHSG-GGC-SSCEEE
T ss_pred ECCCCCCH-HHHHHHHHHH-hcc-CCcEEE
Confidence 37889999 9999999987 543 343433
No 457
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=35.13 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=12.7
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
.+.+|||| ||++.++.
T Consensus 82 ~g~TGsGK-Tt~~~~~~ 97 (235)
T 3llm_A 82 RGATGCGK-TTQVPQFI 97 (235)
T ss_dssp ECCTTSSH-HHHHHHHH
T ss_pred EeCCCCCc-HHhHHHHH
Confidence 46899999 99877654
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.74 E-value=0.086 Score=38.77 Aligned_cols=17 Identities=6% Similarity=-0.189 Sum_probs=14.7
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
.|.||+|| ||+...+..
T Consensus 150 ~G~sG~GK-St~a~~l~~ 166 (314)
T 1ko7_A 150 TGDSGIGK-SETALELIK 166 (314)
T ss_dssp EESTTSSH-HHHHHHHHH
T ss_pred EeCCCCCH-HHHHHHHHh
Confidence 57999999 999888876
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.68 E-value=0.1 Score=35.37 Aligned_cols=16 Identities=6% Similarity=-0.296 Sum_probs=12.9
Q ss_pred CCCCCCChHHHHHHHHh
Q psy1497 2 RKNFGSDIDKYLLQTSG 18 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~ 18 (127)
.|.+|+|| |||...+.
T Consensus 22 ~G~SGaGK-Stlal~L~ 37 (181)
T 3tqf_A 22 TGEANIGK-SELSLALI 37 (181)
T ss_dssp EESSSSSH-HHHHHHHH
T ss_pred EcCCCCCH-HHHHHHHH
Confidence 58999999 98876654
No 460
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.64 E-value=0.13 Score=36.60 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=15.2
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| ||+.+.++..
T Consensus 73 ~G~~GtGK-T~la~~la~~ 90 (309)
T 3syl_A 73 TGNPGTGK-TTVALKMAGL 90 (309)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999877765
No 461
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.52 E-value=0.13 Score=39.48 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+++++.
T Consensus 221 yGPPGTGK-TllAkAiA~e 238 (434)
T 4b4t_M 221 YGPPGTGK-TLLARACAAQ 238 (434)
T ss_dssp ESCTTSSH-HHHHHHHHHH
T ss_pred ECcCCCCH-HHHHHHHHHH
Confidence 48999999 9999999986
No 462
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.48 E-value=0.15 Score=37.05 Aligned_cols=18 Identities=11% Similarity=-0.116 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 50 ~G~~G~GK-T~l~~~~~~~ 67 (387)
T 2v1u_A 50 YGLTGTGK-TAVARLVLRR 67 (387)
T ss_dssp CBCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999875
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.13 Score=39.35 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=16.4
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+++++-
T Consensus 212 ~GPPGtGK-T~lakAiA~~ 229 (428)
T 4b4t_K 212 YGPPGTGK-TMLVKAVANS 229 (428)
T ss_dssp ESCTTTTH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48999999 9999999976
No 464
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.31 E-value=0.18 Score=34.22 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=14.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.-|||| ||.++.|.-.
T Consensus 7 G~DGsGK-sTq~~~L~~~ 23 (197)
T 3hjn_A 7 GIDGSGK-STQIQLLAQY 23 (197)
T ss_dssp CSTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 6789999 9999998865
No 465
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.29 E-value=0.034 Score=37.12 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+.+-
T Consensus 40 G~~~~GK-Ssli~~l~~~ 56 (199)
T 3l0i_B 40 GDSGVGK-SCLLLRFADD 56 (199)
T ss_dssp CCTTSCC-TTTTTSSBCC
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999876
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.14 Score=39.35 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+++++-
T Consensus 221 ~GPPGtGK-TllAkAiA~e 238 (437)
T 4b4t_L 221 YGPPGTGK-TLLAKAVAAT 238 (437)
T ss_dssp ESCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 48999999 9999999986
No 467
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=89.19 E-value=0.18 Score=39.24 Aligned_cols=17 Identities=12% Similarity=-0.214 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..|+|| |||++.+++-
T Consensus 48 G~~~vGK-SSLl~~l~~~ 64 (535)
T 3dpu_A 48 GDGMAGK-TSLLKQLIGE 64 (535)
T ss_dssp SSSCSSH-HHHHHHHHC-
T ss_pred CCCCCCH-HHHHHHHhcC
Confidence 7899999 9999999986
No 468
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.17 E-value=0.12 Score=39.87 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|++.
T Consensus 231 G~~nvGK-SSLln~L~~~ 247 (462)
T 3geh_A 231 GRPNVGK-SSLLNAWSQS 247 (462)
T ss_dssp ECTTSSH-HHHHHHHHHH
T ss_pred cCCCCCH-HHHHHHHhCC
Confidence 6799999 9999999874
No 469
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.12 E-value=0.17 Score=37.74 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=14.0
Q ss_pred CCCCCChHHHHHHHHhC
Q psy1497 3 KNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~g 19 (127)
|+.|||| ||+++.+--
T Consensus 40 G~~~SGK-ST~~kq~~i 55 (362)
T 1zcb_A 40 GAGESGK-STFLKQMRI 55 (362)
T ss_dssp CSTTSSH-HHHHHHHHH
T ss_pred CCCCCcH-HHHHHHHHH
Confidence 7899999 999998853
No 470
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=89.06 E-value=0.12 Score=38.56 Aligned_cols=17 Identities=0% Similarity=-0.195 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||+|.|.+.
T Consensus 167 G~~nvGK-StliN~L~~~ 183 (368)
T 3h2y_A 167 GCTNVGK-STFINRMIKE 183 (368)
T ss_dssp EBTTSSH-HHHHHHHHHH
T ss_pred cCCCCCh-hHHHHHHHhh
Confidence 6789999 9999999885
No 471
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.15 Score=38.87 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+++++-
T Consensus 188 ~GPPGTGK-TllAkAiA~e 205 (405)
T 4b4t_J 188 YGPPGTGK-TLLARAVAHH 205 (405)
T ss_dssp ESCSSSSH-HHHHHHHHHH
T ss_pred eCCCCCCH-HHHHHHHHHh
Confidence 48999999 9999999986
No 472
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=89.03 E-value=0.18 Score=37.97 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHhCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTS 23 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~ 23 (127)
-|+-|||| ||+++.|.-. +.
T Consensus 55 EG~dGsGK-TT~~~~Lae~-L~ 74 (376)
T 1of1_A 55 DGPHGMGK-TTTTQLLVAL-GS 74 (376)
T ss_dssp CSSTTSSH-HHHHHHHHC----
T ss_pred ECCCCCCH-HHHHHHHHHH-hh
Confidence 47889999 9999999987 44
No 473
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.94 E-value=0.15 Score=40.57 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=15.9
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||+|.|+|.
T Consensus 45 G~pnvGK-StLiN~L~g~ 61 (592)
T 1f5n_A 45 GLYRTGK-SYLMNKLAGK 61 (592)
T ss_dssp EBTTSSH-HHHHHHHTTC
T ss_pred CCCCCCH-HHHHHhHcCC
Confidence 6899999 9999999997
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.80 E-value=0.19 Score=37.31 Aligned_cols=18 Identities=11% Similarity=-0.147 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||.+.|+..
T Consensus 13 ~GptgSGK-Ttla~~La~~ 30 (340)
T 3d3q_A 13 VGPTASGK-TELSIEVAKK 30 (340)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECCCcCcH-HHHHHHHHHH
Confidence 37899999 9999998876
No 475
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.75 E-value=0.32 Score=33.94 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |++.+.+...
T Consensus 35 ~G~~GtGK-t~la~~i~~~ 52 (265)
T 2bjv_A 35 IGERGTGK-ELIASRLHYL 52 (265)
T ss_dssp ECCTTSCH-HHHHHHHHHT
T ss_pred ECCCCCcH-HHHHHHHHHh
Confidence 48899999 9999999877
No 476
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.74 E-value=0.2 Score=36.99 Aligned_cols=18 Identities=6% Similarity=-0.123 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||.+.++..
T Consensus 123 ~GppGtGK-T~la~aia~~ 140 (357)
T 3d8b_A 123 FGPPGTGK-TLIGKCIASQ 140 (357)
T ss_dssp ESSTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999876
No 477
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.70 E-value=0.19 Score=36.91 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=16.3
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |++.+.|+..
T Consensus 57 ~GppGtGK-T~la~~ia~~ 74 (363)
T 3hws_A 57 IGPTGSGK-TLLAETLARL 74 (363)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 48999999 9999999976
No 478
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=88.68 E-value=0.15 Score=39.52 Aligned_cols=17 Identities=18% Similarity=-0.087 Sum_probs=14.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+++-
T Consensus 240 G~~nvGK-SSLln~L~~~ 256 (476)
T 3gee_A 240 GKPNAGK-STLLNTLLGQ 256 (476)
T ss_dssp CCTTSSH-HHHHHHCC--
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999886
No 479
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.59 E-value=0.2 Score=36.15 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||.+.++..
T Consensus 61 ~G~~GtGK-T~la~~ia~~ 78 (338)
T 3pfi_A 61 SGPAGLGK-TTLANIISYE 78 (338)
T ss_dssp ECSTTSSH-HHHHHHHHHH
T ss_pred ECcCCCCH-HHHHHHHHHH
Confidence 48999999 9999999865
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.52 E-value=0.21 Score=36.83 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|||| |||-+.|+..
T Consensus 11 ~GptGsGK-Ttla~~La~~ 28 (323)
T 3crm_A 11 MGPTAAGK-TDLAMALADA 28 (323)
T ss_dssp ECCTTSCH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999876
No 481
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.46 E-value=0.17 Score=38.39 Aligned_cols=17 Identities=0% Similarity=-0.167 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.|+|-
T Consensus 10 G~~nvGK-StL~n~l~~~ 26 (436)
T 2hjg_A 10 GRPNVGK-STIFNRIAGE 26 (436)
T ss_dssp CSTTSSH-HHHHHHHEEE
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 7899999 9999999986
No 482
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.43 E-value=0.2 Score=38.32 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.0
Q ss_pred CCCCCCChHHHHHHHHhCCCCCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRIKTSG 24 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~~~~ 24 (127)
-|++|+|| |||.++|+.. ...
T Consensus 56 ~GppGtGK-TtlAr~ia~~-~~~ 76 (447)
T 3pvs_A 56 WGPPGTGK-TTLAEVIARY-ANA 76 (447)
T ss_dssp ECSTTSSH-HHHHHHHHHH-TTC
T ss_pred ECCCCCcH-HHHHHHHHHH-hCC
Confidence 48999999 9999999987 544
No 483
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.34 E-value=0.23 Score=34.06 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=14.6
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| +|.-+.|+-.
T Consensus 7 GpPGsGK-gTqa~~La~~ 23 (206)
T 3sr0_A 7 GPPGAGK-GTQAKRLAKE 23 (206)
T ss_dssp CSTTSSH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 7899999 9998888754
No 484
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.19 E-value=0.23 Score=36.69 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |+|.+.++..
T Consensus 90 ~GppGtGK-T~la~ala~~ 107 (355)
T 2qp9_X 90 YGPPGTGK-SYLAKAVATE 107 (355)
T ss_dssp ECSTTSCH-HHHHHHHHHH
T ss_pred ECCCCCcH-HHHHHHHHHH
Confidence 47899999 9999999876
No 485
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=88.14 E-value=0.15 Score=37.67 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=15.1
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.++||| |||++.|++-
T Consensus 165 G~~nvGK-STLln~L~~~ 181 (342)
T 1lnz_A 165 GFPSVGK-STLLSVVSSA 181 (342)
T ss_dssp SSTTSSH-HHHHHHSEEE
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 9999999865
No 486
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.13 E-value=0.22 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| ||+.+.++..
T Consensus 78 ~Gp~GtGK-T~la~~la~~ 95 (376)
T 1um8_A 78 IGPTGSGK-TLMAQTLAKH 95 (376)
T ss_dssp ECCTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 38899999 9999999876
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.05 E-value=0.24 Score=37.59 Aligned_cols=17 Identities=6% Similarity=-0.220 Sum_probs=15.7
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+|+|| |||++.+.|-
T Consensus 182 G~~nvGK-SSLin~l~~~ 198 (436)
T 2hjg_A 182 GRPNVGK-SSLVNAMLGE 198 (436)
T ss_dssp CSTTSSH-HHHHHHHHTS
T ss_pred cCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999986
No 488
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.01 E-value=0.1 Score=35.32 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=13.4
Q ss_pred CCCCCChHHHHHHH-HhC
Q psy1497 3 KNFGSDIDKYLLQT-SGR 19 (127)
Q Consensus 3 ~~~GsGK~STLl~~-l~g 19 (127)
|..|+|| |||++. +.+
T Consensus 22 G~~~~GK-Ssli~~~~~~ 38 (221)
T 3gj0_A 22 GDGGTGK-TTFVKRHLTG 38 (221)
T ss_dssp ECTTSSH-HHHHTTBHHH
T ss_pred CCCCCCH-HHHHHHHHcC
Confidence 6789999 999998 544
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.84 E-value=0.21 Score=36.48 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=16.0
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |||.+.++..
T Consensus 76 ~GppGtGK-T~la~~la~~ 93 (368)
T 3uk6_A 76 AGQPGTGK-TAIAMGMAQA 93 (368)
T ss_dssp EESTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 47899999 9999999876
No 490
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.67 E-value=0.31 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=21.1
Q ss_pred CCCCCCChHHHHHHHHhCCC-CCC-----CcceEEECCEe
Q psy1497 2 RKNFGSDIDKYLLQTSGRIK-TSG-----TEGSITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl~-~~~-----~~G~i~i~G~~ 35 (127)
-|.+|||| |||+..++... .++ ..+.++|+...
T Consensus 128 ~G~~GsGK-Ttla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 128 FGEFRTGK-TQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp ECCTTCTH-HHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred ECCCCCCH-HHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 37899999 99998777631 221 23455666554
No 491
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.66 E-value=0.046 Score=40.56 Aligned_cols=32 Identities=3% Similarity=-0.165 Sum_probs=19.1
Q ss_pred CCCCCCChHHHHH-HHHhCCCCCC-Ccc-eEEECCEe
Q psy1497 2 RKNFGSDIDKYLL-QTSGRIKTSG-TEG-SITINGHE 35 (127)
Q Consensus 2 ~~~~GsGK~STLl-~~l~gl~~~~-~~G-~i~i~G~~ 35 (127)
-|++|+|| |||. .+++.. ... ..| -++|+++.
T Consensus 34 ~G~pGsGK-TtL~Lq~~~~~-~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 34 AGPSKSFK-SNFGLTMVSSY-MRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EESSSSSH-HHHHHHHHHHH-HHHCTTCEEEEEESSC
T ss_pred ECCCCCCH-HHHHHHHHHHH-HhcCCCceEEEEeccc
Confidence 37899999 8885 555544 221 134 44666654
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.57 E-value=0.21 Score=41.02 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=22.1
Q ss_pred CCCCCCCChHHHHHHHHhCCCCCCCcceEEECCEe
Q psy1497 1 MRKNFGSDIDKYLLQTSGRIKTSGTEGSITINGHE 35 (127)
Q Consensus 1 ~~~~~GsGK~STLl~~l~gl~~~~~~G~i~i~G~~ 35 (127)
+-|++|+|| |||.++|++. .. .+-+.+++.+
T Consensus 516 L~GppGtGK-T~Lakala~~-~~--~~~i~v~~~~ 546 (806)
T 1ypw_A 516 FYGPPGCGK-TLLAKAIANE-CQ--ANFISIKGPE 546 (806)
T ss_dssp CBCCTTSSH-HHHHHHHHHH-HT--CCCCCCCCSS
T ss_pred EECCCCCCH-HHHHHHHHHH-hC--CCEEEEechH
Confidence 358999999 9999999987 43 2344444433
No 493
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.49 E-value=0.27 Score=34.04 Aligned_cols=17 Identities=12% Similarity=-0.154 Sum_probs=14.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|++|||| +|.-+.|+-.
T Consensus 36 GpPGsGK-gTqa~~L~~~ 52 (217)
T 3umf_A 36 GGPGSGK-GTQCEKLVQK 52 (217)
T ss_dssp CCTTCCH-HHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHH
Confidence 7899999 9998888743
No 494
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=87.48 E-value=0.16 Score=38.21 Aligned_cols=17 Identities=12% Similarity=-0.171 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|.+.+|| |||+|.|+|-
T Consensus 79 G~PNvGK-STL~n~Lt~~ 95 (376)
T 4a9a_A 79 GFPSVGK-STLLSKLTGT 95 (376)
T ss_dssp CCCCHHH-HHHHHHHHSB
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 5678999 9999999997
No 495
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.44 E-value=0.24 Score=35.43 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=14.6
Q ss_pred CCCCCCChHHHHHHHHhC
Q psy1497 2 RKNFGSDIDKYLLQTSGR 19 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~g 19 (127)
-|+.|+|| |||.+.++.
T Consensus 44 ~G~~GtGK-T~la~~i~~ 60 (324)
T 1hqc_A 44 FGPPGLGK-TTLAHVIAH 60 (324)
T ss_dssp ECCTTCCC-HHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHH
Confidence 47899999 999998854
No 496
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.09 E-value=0.3 Score=35.50 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCCCCChHHHHHHHHhCCCCCC------CcceEEECCEe
Q psy1497 3 KNFGSDIDKYLLQTSGRIKTSG------TEGSITINGHE 35 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl~~~~------~~G~i~i~G~~ 35 (127)
|.+|||| |||...++.....+ ..+.++|+...
T Consensus 114 G~~GsGK-T~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 114 GEFGSGK-TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ESTTSSH-HHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCH-hHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 6899999 99987776531233 23445665544
No 497
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.97 E-value=0.21 Score=38.68 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=16.6
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|++|+|| |+|.+++++.
T Consensus 249 yGPPGTGK-TlLAkAiA~e 266 (467)
T 4b4t_H 249 YGPPGTGK-TLCARAVANR 266 (467)
T ss_dssp CSCTTSSH-HHHHHHHHHH
T ss_pred eCCCCCcH-HHHHHHHHhc
Confidence 58999999 9999999986
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.88 E-value=0.25 Score=36.09 Aligned_cols=18 Identities=6% Similarity=-0.132 Sum_probs=15.5
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |||++.++..
T Consensus 51 ~G~~G~GK-T~la~~l~~~ 68 (384)
T 2qby_B 51 LGLTGTGK-TFVSKYIFNE 68 (384)
T ss_dssp EECTTSSH-HHHHHHHHHH
T ss_pred ECCCCCCH-HHHHHHHHHH
Confidence 37899999 9999999864
No 499
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=86.84 E-value=0.31 Score=36.62 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHhCC
Q psy1497 3 KNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 3 ~~~GsGK~STLl~~l~gl 20 (127)
|..++|| |||++.|+|.
T Consensus 17 G~~~~GK-STLi~~L~g~ 33 (410)
T 1kk1_A 17 GHVDHGK-TTLTKALTGV 33 (410)
T ss_dssp CSTTSSH-HHHHHHHHTC
T ss_pred CCCCCCH-HHHHHHHhCC
Confidence 6789999 9999999975
No 500
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.75 E-value=0.15 Score=32.52 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.9
Q ss_pred CCCCCCChHHHHHHHHhCC
Q psy1497 2 RKNFGSDIDKYLLQTSGRI 20 (127)
Q Consensus 2 ~~~~GsGK~STLl~~l~gl 20 (127)
-|+.|+|| |++.+.+...
T Consensus 33 ~G~~GtGK-t~lA~~i~~~ 50 (143)
T 3co5_A 33 TGEAGSPF-ETVARYFHKN 50 (143)
T ss_dssp EEETTCCH-HHHHGGGCCT
T ss_pred ECCCCccH-HHHHHHHHHh
Confidence 47899999 9999999876
Done!