RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1497
(127 letters)
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 63.3 bits (155), Expect = 2e-13
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 17 SGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71
+GR G G + ING + FRK+ Y+ QD+ LH LTV E + A L+
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 57.4 bits (139), Expect = 9e-11
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 27 GSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82
GS+ +NG + + R +S Y+ QD+ LTV E + L++ + +TK ++
Sbjct: 83 GSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR 138
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 56.1 bits (136), Expect = 1e-10
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 13 LLQT-SGRIKTSG-TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70
LL SGR++ G T G I NG R QF+K Y+ QD+ L LTV E + L
Sbjct: 49 LLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL 108
Query: 71 KLGKDLTKAARK---DVFSMRDCHFLHLSGHLPRGTLLNLSG 109
+L + + A RK + +RD + G+L +G +SG
Sbjct: 109 RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG----ISG 146
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 38.7 bits (90), Expect = 3e-04
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 6 GSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMN 65
GS L +GRI+ + G+I N + Q K + ++ QD+ L+ +LTV E +
Sbjct: 104 GSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQILKRTGFVTQDDILYPHLTVRETLV 162
Query: 66 VATALKLGKDLTK 78
+ L+L K LTK
Sbjct: 163 FCSLLRLPKSLTK 175
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 37.3 bits (87), Expect = 8e-04
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 17 SGRIKTSGTEGSITINGHE--RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74
+G +K T G I + G++ + ++ R+ Y+ Q+ L+ LTV E + L
Sbjct: 52 AGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109
Query: 75 DLTKAAR 81
R
Sbjct: 110 KEEAEER 116
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 36.1 bits (84), Expect = 0.002
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 17 SGRIKTSGT-EGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAM 64
+GR KT+G G I ING + + F++ + Y+ Q + NLTV EA+
Sbjct: 54 AGR-KTAGVITGEILINGRPLDKN-FQRSTGYVEQQDVHSPNLTVREAL 100
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid
transport, and lantibiotic immunity. In bacteria and
archaea, these transporters usually include an
ATP-binding protein and one or two integral membrane
proteins. Eukaryotic systems of the ABCA subfamily
display ABC domains that are quite similar to this
family. The ATP-binding domain shows the highest
similarity between all members of the ABC transporter
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 25 TEGSITINGHE--RNLSQFRKLSCYIMQDNQLHANLTVEE 62
G I + G + + + ++ Y+ ++ L+ NLTV E
Sbjct: 53 DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 35.7 bits (83), Expect = 0.003
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 25 TEGSITING--------HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76
+ G I ++G +R + + Q L ++TVEE NVA LK+ K L
Sbjct: 58 SSGEILLDGEDITDVPPEKRPI-------GMVFQSYALFPHMTVEE--NVAFGLKVRKKL 108
Query: 77 TKAARK 82
KA K
Sbjct: 109 KKAEIK 114
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 34.9 bits (81), Expect = 0.005
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 25 TEGSITINGHE--RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71
+ G+I I+G + + + R+ Y+ Q+ ++ N TV E ++ LK
Sbjct: 52 SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 33.6 bits (78), Expect = 0.013
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 25 TEGSITINGHE--RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71
T G+ ING+ + R+ Y Q + L LTV E + LK
Sbjct: 55 TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 33.9 bits (78), Expect = 0.014
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 17 SGRIKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLH-ANLTVEEAMNVATALKLG 73
+ R T+G T G +NG + S F++ Y+ Q LH TV E++ + L+
Sbjct: 810 AER-VTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQ-QDLHLPTSTVRESLRFSAYLRQP 866
Query: 74 KDLTKAARKD 83
K ++K+ + +
Sbjct: 867 KSVSKSEKME 876
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 34.1 bits (78), Expect = 0.014
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 17 SGRIKTSG-TEGSITINGHERNLSQFRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGK 74
+GR KT G EG I I+G + F ++S Y Q N +H+ +TV E++ + L+L K
Sbjct: 927 AGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQ-NDIHSPQVTVRESLIYSAFLRLPK 984
Query: 75 DLTK 78
+++K
Sbjct: 985 EVSK 988
Score = 32.5 bits (74), Expect = 0.045
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 13 LLQTSGRIKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHAN-LTVEEAMN 65
LL +G++ S G IT NG+ N RK S YI Q N +H +TV+E ++
Sbjct: 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQ-NDVHVGVMTVKETLD 261
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 32.7 bits (75), Expect = 0.015
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 21 KTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 76
T G+I ++G + RK + QD QL LTV E N+ L+ +
Sbjct: 10 LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE--NLFFGLRDKEAD 67
Query: 77 TKAARKDVFSMRDCHFLHLSGHLPRGTL 104
+A + P GTL
Sbjct: 68 ARAEEA----LERVGLPDFLDREPVGTL 91
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 33.4 bits (77), Expect = 0.016
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 26 EGSITINGHE------RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 79
EGS+ + G E + L Q R+ YI Q + L LT + NV AL+L +L+
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQ--NVQMALELQPNLSYQ 116
Query: 80 ARKD 83
++
Sbjct: 117 EARE 120
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 33.3 bits (77), Expect = 0.016
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 25 TEGSITING-----HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70
GSI I+G E L R+ + QD L +LTV E N+A L
Sbjct: 53 DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE--NIALGL 101
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 33.0 bits (76), Expect = 0.025
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 25 TEGSITINGHE------RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 72
+ G + I G + R L R+ + QD +L + TV E NVA L++
Sbjct: 55 SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYE--NVALPLEV 106
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 32.8 bits (76), Expect = 0.026
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 25 TEGSITINGHE-RNLSQFRKLS---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 80
GSI +G + L + Y+ + ++ LTVEE + + A + KA
Sbjct: 53 RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-AYARRRAKRKAR 111
Query: 81 RKDVFSM 87
+ V+ +
Sbjct: 112 LERVYEL 118
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 32.3 bits (74), Expect = 0.043
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 25 TEGSITINGH---ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81
T G I I+G + + + R+ Y++Q L +LTV E N+AT KL K
Sbjct: 54 TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE--NIATVPKL-LGWDKERI 110
Query: 82 KD 83
K
Sbjct: 111 KK 112
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 31.6 bits (72), Expect = 0.084
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 27 GSITINGHERNLSQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 84
G I ING + S + + Q+N L A+LTV + N+ L G L R+ V
Sbjct: 54 GEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQ--NIGLGLSPGLKLNAEQREKV 110
>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
gtfA in Streptococcus gordonii, where it plays a role in
the O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 372
Score = 31.4 bits (72), Expect = 0.085
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 5 FGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQ-FRKLSCYIMQDNQLHANLTVEEA 63
+G ++ L+ I+ G E + + G+ R+L + ++K ++ L++ EA
Sbjct: 241 YGYGDEEEKLKE--LIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEA 298
Query: 64 MN 65
++
Sbjct: 299 LS 300
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 31.5 bits (72), Expect = 0.100
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 8 DIDKY-LLQTSGRIKTSGTEGSITINGHERNLSQ 40
DID +LQ S +T+G E S+TI G LS+
Sbjct: 472 DIDANGILQVSATDRTTGREQSVTIQGAS-TLSE 504
>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine
protease. This model describes a rhomboid-like
intramembrane serine protease. Its species distribution
closely matches model TIGR03501, GlyGly-CTERM, which
describes a protein targeting domain analogous to LPXTG
and PEP-CTERM. In a number of species (Ralstonia
eutropha ,R. metallidurans, R. solanacearum,
Marinobacter aquaeolei, etc) with just one GlyGly-CTERM
protein (i.e., a dedicated system), the rhombosortase
and GlyGly-CTERM genes are adjacent.
Length = 154
Score = 29.1 bits (66), Expect = 0.41
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 91 HFLHLSG-HLPRGTLLNLSGLWGIG 114
HF+HL+ HL L+NL+GL +
Sbjct: 23 HFVHLNWWHL----LMNLAGLLLLW 43
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 29.2 bits (66), Expect = 0.42
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 13 LLQTSGRIKTSGTEGSITINGHE------RNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 66
LL+ R+ + GSI + G + + L + R+ I Q L LTV E NV
Sbjct: 44 LLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLE--NV 100
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 29.1 bits (66), Expect = 0.54
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Query: 25 TEGSITINGHERN---LSQFRKLSCYIMQDNQL------------HANLTVEEAMNVA 67
+G I ++G + N L+ R+ Y++QD L + T EE + A
Sbjct: 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA 583
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 29.0 bits (66), Expect = 0.61
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 13 LLQT-SGRIKTSGTEGSITING--------HERNLSQFRKLSCYIMQDNQLHANLTVEEA 63
LL+T G ++ G I +G HER R Y+ + ++ LTVEE
Sbjct: 45 LLKTIMGLVRP--RSGRIIFDGEDITGLPPHER----ARLGIAYVPEGRRIFPRLTVEE- 97
Query: 64 MNVATALKLGKDLTKAARK--DVFSM 87
N+ +D R +V+ +
Sbjct: 98 -NLLLGAYARRDKEAQERDLEEVYEL 122
>gnl|CDD|177769 PLN00174, PLN00174, predicted protein; Provisional.
Length = 160
Score = 28.5 bits (63), Expect = 0.69
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 7/28 (25%)
Query: 91 HFLHLSGHLPRGTLLNLSGLWGIGVFNV 118
H LS + G W +G N
Sbjct: 64 HLF-LSI------AFVIRGWWIVGFLNF 84
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 28.6 bits (64), Expect = 0.73
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 25 TEGSITINGHERNLSQF--RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82
G + ING + + R +S + Q+N L A+LTVE+ NV L G LT R+
Sbjct: 51 QSGRVLINGVDVTAAPPADRPVS-MLFQENNLFAHLTVEQ--NVGLGLSPGLKLTAEDRQ 107
Query: 83 DV 84
+
Sbjct: 108 AI 109
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 25 TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE 62
G+I ++G + + + Y+ N + LTV E
Sbjct: 55 AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 27.6 bits (62), Expect = 1.4
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 24 GTEGSITINGHE--RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71
EG I NG ++ Y+ +++ LTV E ++ A K
Sbjct: 62 SVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111
>gnl|CDD|180731 PRK06852, PRK06852, aldolase; Validated.
Length = 304
Score = 27.6 bits (62), Expect = 1.9
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 8 DIDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA----NLTVEEA 63
D +++L Q +I SG G N RN+ Q + L + N ++A + +VEEA
Sbjct: 242 DPEEFLKQLYEQIHISGASG----NATGRNIHQ-KPLDEAVRMCNAIYAITVEDKSVEEA 296
Query: 64 MNV 66
+ +
Sbjct: 297 LKI 299
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 27.5 bits (62), Expect = 2.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 25 TEGSITINGHERN------LSQFRKLSCYIMQDNQLHANLTVEEAMNV 66
T GS+ I+G + N L Q R+ I Q L L+V E NV
Sbjct: 54 TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLE--NV 99
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 26.9 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 9/43 (20%)
Query: 26 EGSITINGHE------RNLSQFRKLSCYIMQDNQLHANLTVEE 62
G ITI+G E + L++ KLS + Q+N +++ LTV +
Sbjct: 55 SGEITIDGLELTSTPSKELAK--KLSI-LKQENHINSRLTVRD 94
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific
groups of GAPs that enhance the rate of GTP hydrolysis
by several orders of magnitude.
Length = 187
Score = 26.2 bits (58), Expect = 5.3
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 9 IDKYLLQTSGRIKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68
++K L G + SG NL+ +KL + D +L + + E ++V T
Sbjct: 27 VEKRGLDVDGIYRVSG------------NLAVIQKLRFAVDHDEKLDLDDSKWEDIHVIT 74
Query: 69 -ALKL 72
ALKL
Sbjct: 75 GALKL 79
>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional.
Length = 183
Score = 25.9 bits (57), Expect = 6.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 29 ITINGHERNLSQFRKLSCYI 48
I I+G LS+F+ I
Sbjct: 26 IDIDGQLVQLSKFKGKKAII 45
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and
an outer membrane protein (OMP). For the HlyA
transporter complex, HlyB (ABC transporter) and HlyD
(MFP) reside in the inner membrane of E. coli. The OMP
component is TolC, which is thought to interact with
the MFP to form a continuous channel across the
periplasm from the cytoplasm to the exterior. HlyB
belongs to the family of ABC transporters, which are
ubiquitous, ATP-dependent transmembrane pumps or
channels. The spectrum of transport substrates ranges
from inorganic ions, nutrients such as amino acids,
sugars, or peptides, hydrophobic drugs, to large
polypeptides, such as HlyA.
Length = 173
Score = 25.6 bits (57), Expect = 6.2
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 25 TEGSITING---HERNLSQFRKLSCYIMQDNQL 54
T G + ++G + + ++ Y+ QD++L
Sbjct: 55 TSGRVRLDGADISQWDPNELGDHVGYLPQDDEL 87
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 25.7 bits (57), Expect = 7.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 27 GSITING--HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 82
GS+T+NG H R +S + Q+N L ++LTV + N+ L G L A R+
Sbjct: 54 GSLTLNGQDHTTTPPSRRPVS-MLFQENNLFSHLTVAQ--NIGLGLNPGLKLNAAQRE 108
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic
protection ABC transporter, ATP-binding subunit. Model
TIGR03731 represents the family of all lantibiotics
related to gallidermin, including epidermin, mutatin,
and nisin. This protein family describes the
ATP-binding subunit of a gallidermin/epidermin class
lantibiotic protection transporter. It is largely
restricted to gallidermin-family lantibiotic
biosynthesis and export cassettes, but also occurs in
orphan transporter cassettes in species that lack
candidate lantibiotic precursor and synthetase genes.
Length = 223
Score = 25.8 bits (57), Expect = 7.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 25 TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 70
T G I +GH K+ I + L+ NLT E + V T L
Sbjct: 53 TSGEIIFDGHPWTRKDLHKIGSLI-ESPPLYENLTARENLKVHTTL 97
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1
and is thought to have a role in resistance to
oxidative stress. Interestingly, subfamily B is more
closely related to the carboxyl-terminal component of
subfamily C than the two halves of ABCC molecules are
with one another.
Length = 238
Score = 25.6 bits (57), Expect = 8.2
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 25 TEGSITINGH---ERNLSQFRKLSCYIMQDNQLHANLTVEE 62
T G I ++G + NL R + Q+ L T+ E
Sbjct: 56 TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG-TIAE 95
>gnl|CDD|132281 TIGR03237, dnd_assoc_2, DNA phosphorothioation-dependent restriction
protein DptH. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 1256
Score = 25.6 bits (56), Expect = 9.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 29 ITINGHERN-----LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 74
+ HE +S ++ + Y + L L++ E + VA + L
Sbjct: 1019 VGSKDHESREKLGIISAYKFVLAYFEHSDILWVPLSLAEVIRVAGNVGLKM 1069
>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized
glutathione is regenerated by glutathione reductase.
Together these components compose the glutathione
system. Glutaredoxins utilize the CXXC motif common to
thioredoxins and are involved in multiple cellular
processes including protection from redox stress,
reduction of critical enzymes such as ribonucleotide
reductase and the generation of reduced sulfur for iron
sulfur cluster formation. Glutaredoxins are capable of
reduction of mixed disulfides of glutathione as well as
the formation of glutathione mixed disulfides. This
model represents eukaryotic glutaredoxins and includes
sequences from fungi, plants and metazoans as well as
viruses.
Length = 84
Score = 24.5 bits (54), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 2 RKNFGSDIDKYLLQTSGRIKTSGTEGSITINGH 34
+ + GS+I YL + +G+ T +I ING
Sbjct: 35 QLSNGSEIQDYLEEITGQ----RTVPNIFINGK 63
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 25.0 bits (56), Expect = 9.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 25 TEGSITINGH---ERNLSQFRKLSCYIMQDNQL 54
T G I I+G + +L RK Y+ QD L
Sbjct: 55 TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL 87
>gnl|CDD|202669 pfam03495, Binary_toxB, Clostridial binary toxin B/anthrax toxin
PA. The N-terminal region of this family contains a
calcium-binding motif that may be an EF-hand.
Length = 406
Score = 25.5 bits (56), Expect = 9.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 15 QTSGRIKTSGTEGSITINGHE 35
Q G T + G+I ++G+
Sbjct: 266 QVYGNYATYNSNGNIVVDGNN 286
>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR
synthetase) [Nucleotide transport and metabolism].
Length = 375
Score = 25.3 bits (56), Expect = 10.0
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 72 LGKDLTKAARKDVFSMRDCHFLHLSG 97
LG D+ K V ++ H LH G
Sbjct: 310 LGDDVPPDDVKAVLALPGAH-LHWYG 334
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,127,579
Number of extensions: 504573
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 58
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)