RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1497
(127 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 33.3 bits (77), Expect = 0.012
Identities = 7/47 (14%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 25 TEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 71
+G I NG +++ + ++ ++ + ++VE+ + +L
Sbjct: 62 LKGEIIYNGV--PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY 106
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 33.1 bits (76), Expect = 0.013
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 25 TEGSITINGHERNLSQFRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGK 74
G+I ING + + R Y + + +TV + V +L
Sbjct: 56 YSGNIFING--MEVRKIRNYIRYSTNLPEAYEIGVTVND--IVYLYEELKG 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.029
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 37/112 (33%)
Query: 36 RNLSQFRKLSCYIMQDNQ-LHANLTVE-------EAMNVA------TALKL--------- 72
NL+Q ++ Y+ + N L A VE + + V+ L L
Sbjct: 342 SNLTQ-EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 73 GKDLTKA---ARKDVFSMRDCHFL------HLSGHLPRGTLLNLSGLWGIGV 115
G D ++ RK FS R FL H S L + L L V
Sbjct: 401 GLDQSRIPFSERKLKFSNR---FLPVASPFH-SHLLVPASDLINKDLVKNNV 448
Score = 26.9 bits (59), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 73 GKDL---TKAARKDVFSMRDCHFLHLSG 97
G DL +KAA+ DV++ D HF G
Sbjct: 1632 GMDLYKTSKAAQ-DVWNRADNHFKDTYG 1658
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 31.8 bits (73), Expect = 0.038
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 25 TEGSITINGHERNLSQFRKLSCYIMQ--DNQLHANLTVEE 62
T G + +G + + R+ Q ++Q A V +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFD 98
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 31.1 bits (71), Expect = 0.065
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 25 TEGSITINGHE------RNLSQFRKLSCYIMQDNQLHANL----TVEEAMNVATALKLGK 74
TEGS+ ++G E L++ R+ I Q H NL TV NVA L+L
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQ----HFNLLSSRTVFG--NVALPLELDN 134
Query: 75 DLTKAARK 82
K K
Sbjct: 135 -TPKDEVK 141
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 29.8 bits (68), Expect = 0.18
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 25 TEGSITINGH--ERNLSQFRKLSCYIMQDNQLHANLTVEE 62
+ G +T+ G + RKL Y+ ++ + N+ E
Sbjct: 68 SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE 107
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 26.8 bits (59), Expect = 2.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 5 FGSDIDKYLLQTSGRIKTSGTEGSITINGHERNLSQ 40
F S ID + R + T SI ++G E S+
Sbjct: 226 FLS-IDPSFVPEPLRRQGKRTYRSIAVDGEEVEFSE 260
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 146
Score = 26.1 bits (58), Expect = 2.9
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 13/46 (28%)
Query: 15 QTSGRIKTS--------GTEGSITINGHERNLSQF--RKLSCYIMQ 50
Q GR KT+ G G I +NG R L R L +++
Sbjct: 11 QVFGRKKTATAVAHCKRGN-GLIKVNG--RPLEMIEPRTLQYKLLE 53
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 25.3 bits (56), Expect = 5.7
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 45 SCYIMQ--DNQLHANLTVEEAMNVATALKLGKD-LTKAARKDVFS 86
S M +++ ++ EEA L + + D+ S
Sbjct: 131 SLAAMAVFEDKFRPDMEEEEAK------NLVSEAIAAGIFNDLGS 169
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 24.9 bits (55), Expect = 9.5
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 45 SCYIMQ--DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFS 86
S Y D +L VE+A ++A + + +A +D +S
Sbjct: 132 SVYAYGVMDRGYSYDLEVEQAYDLAR-----RAIYQATYRDAYS 170
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 24.5 bits (54), Expect = 9.9
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 45 SCYIMQ--DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVFS 86
S M ++ +LT EEA+ +A+ + D+ S
Sbjct: 131 SLAAMAVLESHWKQDLTKEEAIKLAS-----DAIQAGIWNDLGS 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,596
Number of extensions: 93912
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 24
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)