RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1497
         (127 letters)



>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
           domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 239

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 25  TEGSITINGHERN-LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 83
           TEG I     +   L    +    + Q   +  ++TV E  N+A  LK+ K       K 
Sbjct: 59  TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKR 116

Query: 84  VFSMRDCHFLHLSGHLPR 101
           V    +   L +   L R
Sbjct: 117 VRWAAE--LLQIEELLNR 132


>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
           MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 253

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 25  TEGSITINGH---ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 81
            EG I ++GH   E  L+  R     + Q+  L  +          T     + + +AAR
Sbjct: 68  DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR 127

Query: 82  KDVFSMRDCHFLHLSGHLPRG--TLL-----NLSG 109
                    + +     +  G  T++      LSG
Sbjct: 128 M-------AYAMDFINKMDNGLDTIIGENGVLLSG 155


>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
           regulator, CFTR, nucleotide-binding domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 281

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 25  TEGSITINGHERNLSQFRKL-SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 83
           +EG I  +G     SQF  +    I ++     +       +V  A +L +D+TK A +D
Sbjct: 89  SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 148

Query: 84  VFSMRDCHFLHLSG 97
             ++     + LSG
Sbjct: 149 -NTVLGEGGVTLSG 161


>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
           permease {Salmonella typhimurium [TaxId: 90371]}
          Length = 258

 Score = 26.0 bits (57), Expect = 1.4
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 18/75 (24%)

Query: 25  TEGSITINGHE----------------RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVAT 68
           +EG+I +NG                    L   R     + Q   L +++TV E  NV  
Sbjct: 55  SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--NVME 112

Query: 69  ALKLGKDLTKAARKD 83
           A      L+K   ++
Sbjct: 113 APIQVLGLSKHDARE 127


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
           [TaxId: 10754]}
          Length = 554

 Score = 24.2 bits (52), Expect = 6.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 7/37 (18%)

Query: 85  FSMRDCHFLHL-SGHLPRG------TLLNLSGLWGIG 114
           F  R CHF  +   + P G      T  NLSG WG G
Sbjct: 170 FLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKG 206


>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 159

 Score = 23.6 bits (50), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 59  TVEEAMNVATALKLGKDLTKAARKDVFSMRDCHFLH-LSGHLPR 101
            +++A+ +    +LGK L     +++ +     FLH LSG  PR
Sbjct: 103 ELKDAVAIMGNAQLGKQLAPDDVENIVA-----FLHSLSGKQPR 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,254
Number of extensions: 16791
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 7
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)