Query psy14970
Match_columns 137
No_of_seqs 108 out of 477
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:13:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 1.9E-39 4.1E-44 278.5 9.0 126 1-130 287-416 (467)
2 KOG3776|consensus 100.0 5.2E-38 1.1E-42 272.8 8.1 119 1-120 293-413 (507)
3 PF00686 CBM_20: Starch bindin 28.5 39 0.00084 22.6 1.5 33 97-130 2-34 (96)
4 smart00218 ZU5 Domain present 26.7 72 0.0016 22.6 2.7 21 35-62 67-87 (104)
5 PF14560 Ubiquitin_2: Ubiquiti 24.6 17 0.00037 24.1 -0.8 43 84-129 30-73 (87)
6 PF11367 DUF3168: Protein of u 23.5 1.6E+02 0.0036 19.6 4.0 49 61-110 6-65 (121)
7 PF11271 DUF3068: Protein of u 23.4 60 0.0013 26.7 2.0 22 84-105 219-240 (301)
8 PF06903 VirK: VirK protein; 20.3 1.2E+02 0.0026 21.5 2.8 19 85-104 64-82 (100)
9 PF15160 SASRP1: Spermatogenes 16.8 1.5E+02 0.0031 24.0 2.8 55 38-94 149-205 (244)
10 PF13553 FIIND: Function to fi 16.4 73 0.0016 26.2 1.1 62 38-100 49-122 (255)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=1.9e-39 Score=278.53 Aligned_cols=126 Identities=44% Similarity=0.831 Sum_probs=118.0
Q ss_pred CcCCeeeEEEecCCCCccCCCCCCCCCcccCCCC----CCCCCceeecCCCCCCCceeeccCCccCCCCCccccccccCC
Q psy14970 1 MVHDLSGTLFVADKSVFDNGTQCPDSSCYCPNNI----CSQPSGIRDLSPCKHGAPAYLSFPHFYQGDPSYSNAVRGLSP 76 (137)
Q Consensus 1 ~~~GI~~~Ry~~~~~~f~~~~~~p~n~cfC~~~~----C~~p~Gl~nls~C~~g~Pv~~S~PHF~~~dp~l~~~v~Gl~P 76 (137)
+++||+++||++++++|++++.+|+|+|||.+.. |+ |+|++|+|+|++|+|+++|+||||+|||+++++|+||+|
T Consensus 287 ~~~Gi~~~rf~~~~~~f~~~~~~~~n~c~C~~~~~~~~c~-p~G~~~ls~C~~g~Pi~~S~PHF~~adp~~~~~v~Gl~P 365 (467)
T PF01130_consen 287 TVKGIPAYRFVLPPNVFDNGSNNPENKCFCPKNSDECNCL-PSGLLNLSPCQFGAPIFVSFPHFYNADPSLLEAVEGLNP 365 (467)
T ss_pred ecCCeEEEEEEEChhHhcCcCcCccccccCCCCCcccccC-CcceEechhhcCCCCccccCcccccCChhhhhcCCCCCC
Confidence 3689999999999999999999999999997643 99 999999999988999999999999999999999999999
Q ss_pred CCCCCceeEeeeecCCccceeeeeeeEeEEeeccCCcccccCceeecccccccc
Q psy14970 77 NKSQHEFSIVLEKNTGIPLQVNARLQINILLRKIKDLEGLTEGTVTLGSYRPEI 130 (137)
Q Consensus 77 d~e~H~~~i~iEP~TG~pL~~~~RlQiNi~v~~~~~~~~~~~~~~~~~~~~~~~ 130 (137)
|+|+|++|++|||.||+||++++|+|+|+.|++.+.+++++++. ..|+|-+
T Consensus 366 d~~~H~~~~~iEP~tG~~l~~~~rlQ~N~~v~~~~~~~~~~~~~---~~~~Pl~ 416 (467)
T PF01130_consen 366 DPEKHETYIDIEPTTGIPLQAAKRLQINLLVRPTDGISIYKNLP---NVIFPLF 416 (467)
T ss_pred CcccceeEEEeecccCeeeeeeEeeeeeEEecCccccccccCCC---cEEEeeE
Confidence 99999999999999999999999999999999999999998874 5666643
No 2
>KOG3776|consensus
Probab=100.00 E-value=5.2e-38 Score=272.83 Aligned_cols=119 Identities=43% Similarity=0.797 Sum_probs=114.2
Q ss_pred CcCCeeeEEEecCCCCccCCCCCCCCCcccCC--CCCCCCCceeecCCCCCCCceeeccCCccCCCCCccccccccCCCC
Q psy14970 1 MVHDLSGTLFVADKSVFDNGTQCPDSSCYCPN--NICSQPSGIRDLSPCKHGAPAYLSFPHFYQGDPSYSNAVRGLSPNK 78 (137)
Q Consensus 1 ~~~GI~~~Ry~~~~~~f~~~~~~p~n~cfC~~--~~C~~p~Gl~nls~C~~g~Pv~~S~PHF~~~dp~l~~~v~Gl~Pd~ 78 (137)
+++||++|||+++.+.|+++..+|++.|||.+ ..|+ ++|++|+|+|++|+|+++|+||||.|||+|+++|+||+|++
T Consensus 293 ~~~Gi~~~rf~~p~~~~d~~~~~~~~~Cy~~~~~~~Cl-p~G~~niS~C~~~~pv~~S~PHFy~adp~~~~~v~Gl~P~~ 371 (507)
T KOG3776|consen 293 TVNGIPAYRFVVPEDSFDNTLDNPDGFCYCTEKKPNCL-PSGVLNISQCQGGAPVYLSFPHFYLADPVLVEAVEGLNPNK 371 (507)
T ss_pred EECCccceeeccchhhcCCCCCCCCccccCccccCCCC-ccCceeehhhcCCCcceecCchhccCCHhHHhcCCCCCCCh
Confidence 37899999999999999999999999999975 3599 99999999999999999999999999999999999999999
Q ss_pred CCCceeEeeeecCCccceeeeeeeEeEEeeccCCcccccCce
Q psy14970 79 SQHEFSIVLEKNTGIPLQVNARLQINILLRKIKDLEGLTEGT 120 (137)
Q Consensus 79 e~H~~~i~iEP~TG~pL~~~~RlQiNi~v~~~~~~~~~~~~~ 120 (137)
|+|++|++|||.||+||++++|+|+|+.|++.+++..++++-
T Consensus 372 e~He~~~dieP~tG~plq~~~RlQiNl~v~~~~~~~~~~~~~ 413 (507)
T KOG3776|consen 372 EKHETYFDIEPKTGTPLQAAKRLQINLPVEPVKGIRSMSNLP 413 (507)
T ss_pred hhCceEEEeccCCCCeeEEeEEEEEEEEecccCCcccccccc
Confidence 999999999999999999999999999999999999988874
No 3
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=28.48 E-value=39 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=24.5
Q ss_pred eeeeeeEeEEeeccCCcccccCceeecccccccc
Q psy14970 97 VNARLQINILLRKIKDLEGLTEGTVTLGSYRPEI 130 (137)
Q Consensus 97 ~~~RlQiNi~v~~~~~~~~~~~~~~~~~~~~~~~ 130 (137)
+..+|+++..+.....+.+.++. ..||++-|+=
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~-~~LG~W~~~~ 34 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSC-PELGNWDPKK 34 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESS-GGGTTTSGGG
T ss_pred EEEEEEEEeECCCCCEEEEEECc-HHhCCCChHh
Confidence 56788888888888888888887 8899888853
No 4
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=26.69 E-value=72 Score=22.56 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=15.8
Q ss_pred CCCCCceeecCCCCCCCceeeccCCccC
Q psy14970 35 CSQPSGIRDLSPCKHGAPAYLSFPHFYQ 62 (137)
Q Consensus 35 C~~p~Gl~nls~C~~g~Pv~~S~PHF~~ 62 (137)
|- |.|+. +-.||++++||+-.
T Consensus 67 cG-P~G~~------f~~PViL~vPHcA~ 87 (104)
T smart00218 67 CG-PHGAL------FLRPVILEVPHCAS 87 (104)
T ss_pred EC-CCCCe------EcCCEEEecccccC
Confidence 55 66654 46899999999964
No 5
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=24.61 E-value=17 Score=24.07 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=24.7
Q ss_pred eEeeeecCCccceeeeeeeEeEE-eeccCCcccccCceeeccccccc
Q psy14970 84 SIVLEKNTGIPLQVNARLQINIL-LRKIKDLEGLTEGTVTLGSYRPE 129 (137)
Q Consensus 84 ~i~iEP~TG~pL~~~~RlQiNi~-v~~~~~~~~~~~~~~~~~~~~~~ 129 (137)
--.+|+.+|++-+ ..|+-+. -.....+..+.+-..+||+|=-+
T Consensus 30 K~kl~~~~Gi~~~---~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 30 KQKLEKLTGIPPS---DMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp HHHHHHHHTS-TT---TEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred HHHHHHHhCCCcc---cEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 3457888999844 3344333 23444455566677888888543
No 6
>PF11367 DUF3168: Protein of unknown function (DUF3168); InterPro: IPR021508 This family of proteins has no known function. ; PDB: 2LFP_A.
Probab=23.51 E-value=1.6e+02 Score=19.61 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=21.9
Q ss_pred cCCCCCccccccc---cCCCCCCCceeEeeeecCCccc--------eeeeeeeEeEEeecc
Q psy14970 61 YQGDPSYSNAVRG---LSPNKSQHEFSIVLEKNTGIPL--------QVNARLQINILLRKI 110 (137)
Q Consensus 61 ~~~dp~l~~~v~G---l~Pd~e~H~~~i~iEP~TG~pL--------~~~~RlQiNi~v~~~ 110 (137)
|.+|+.+...|.+ ..|+. .--.|+.+.+.++.+. ....++||.+.-+..
T Consensus 6 L~ada~l~~lv~~iyd~~P~~-~~~Pyi~~~~~~~~~~~~~~~~~~~~~~~~qIdvws~~~ 65 (121)
T PF11367_consen 6 LRADAALAALVGGIYDYAPDG-APYPYIVIGEVSSVPDSTKDGEGGGDRVRVQIDVWSRTY 65 (121)
T ss_dssp ----TTTTTT-S-EESS--TT-S-SSEEEEE--TT-S-SS---SSS---EEEEEEEE--S-
T ss_pred cccHHHHHHhcCcccccCCCC-CCCeEEEEEEeeeeeccccCCCCcceEEEEEEEEEECCc
Confidence 5567777666665 34544 4567899999888776 237788888875533
No 7
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=23.39 E-value=60 Score=26.67 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=16.6
Q ss_pred eEeeeecCCccceeeeeeeEeE
Q psy14970 84 SIVLEKNTGIPLQVNARLQINI 105 (137)
Q Consensus 84 ~i~iEP~TG~pL~~~~RlQiNi 105 (137)
.+-|||.||++++.....+.=+
T Consensus 219 ~lwVeP~TG~iV~~~e~~~~~~ 240 (301)
T PF11271_consen 219 TLWVEPVTGVIVDVEEDQHDYY 240 (301)
T ss_pred EEEEcCCCCcEEeeEEEEEEEE
Confidence 4779999999998776654433
No 8
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=20.28 E-value=1.2e+02 Score=21.45 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=14.0
Q ss_pred EeeeecCCccceeeeeeeEe
Q psy14970 85 IVLEKNTGIPLQVNARLQIN 104 (137)
Q Consensus 85 i~iEP~TG~pL~~~~RlQiN 104 (137)
+-++.. |.|+..-.|.|++
T Consensus 64 fTv~~~-g~Pi~qf~rY~i~ 82 (100)
T PF06903_consen 64 FTVDND-GKPIQQFIRYQIR 82 (100)
T ss_pred EEECCC-CCceEeEEEEEEc
Confidence 335533 9999999998875
No 9
>PF15160 SASRP1: Spermatogenesis-associated serine-rich protein 1
Probab=16.79 E-value=1.5e+02 Score=23.99 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=40.5
Q ss_pred CCceeecCCCC--CCCceeeccCCccCCCCCccccccccCCCCCCCceeEeeeecCCcc
Q psy14970 38 PSGIRDLSPCK--HGAPAYLSFPHFYQGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIP 94 (137)
Q Consensus 38 p~Gl~nls~C~--~g~Pv~~S~PHF~~~dp~l~~~v~Gl~Pd~e~H~~~i~iEP~TG~p 94 (137)
.+|+-.++++- |.+|=+ -+-|+.+...+---.-|+.|-+.+-++||-+||+.-+|
T Consensus 149 RNgIpkltPGDnpY~~pEq--S~~FhK~GST~P~VnF~l~pyekk~dTfIPleplp~~p 205 (244)
T PF15160_consen 149 RNGIPKLTPGDNPYMSPEQ--SKDFHKAGSTLPPVNFSLVPYEKKFDTFIPLEPLPQIP 205 (244)
T ss_pred CCCCCccCCCCCCccCccc--CchhhhccCcCCceeecccccccccccccccCcCCCCC
Confidence 46777777774 234432 36687777777655668899999999999999998776
No 10
>PF13553 FIIND: Function to find
Probab=16.35 E-value=73 Score=26.18 Aligned_cols=62 Identities=29% Similarity=0.450 Sum_probs=36.6
Q ss_pred CCc-eeecCCCCCCCceeeccCCccCC-----CCCcc--cccc--cc--CCCCCCCceeEeeeecCCccceeeee
Q psy14970 38 PSG-IRDLSPCKHGAPAYLSFPHFYQG-----DPSYS--NAVR--GL--SPNKSQHEFSIVLEKNTGIPLQVNAR 100 (137)
Q Consensus 38 p~G-l~nls~C~~g~Pv~~S~PHF~~~-----dp~l~--~~v~--Gl--~Pd~e~H~~~i~iEP~TG~pL~~~~R 100 (137)
+-| ++|+ .|-.|++..+=+|||+.- |.+.. ..+. || .+..+-..+++.+|=-++.|+..-.|
T Consensus 49 ~aGPLFdI-k~e~g~v~ai~LPH~l~L~~~~vd~~~f~VaH~k~~~~~le~p~~v~~~h~vl~~psfSp~Gvvlr 122 (255)
T PF13553_consen 49 VAGPLFDI-KCEPGAVVAIHLPHFLCLQEGHVDTSLFQVAHFKDEGMELEPPTRVEPTHAVLENPSFSPFGVVLR 122 (255)
T ss_pred EecceEEE-EeCCCceEEEECCeEEEecCCCCChhheEEEEEeCCceEEeccceeceeEEEEcCCCCCcceEEEE
Confidence 444 7788 666699999999999643 11111 1222 33 33334445667777777766665543
Done!