Query psy14970
Match_columns 137
No_of_seqs 108 out of 477
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:14:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxr_A Tight junction protein 39.1 18 0.00061 25.2 2.3 19 49-69 77-95 (118)
2 2kxs_A Tight junction protein 14.5 41 0.0014 24.3 0.3 19 49-69 91-109 (146)
3 4doo_A Chalcone-flavanone isom 13.2 54 0.0019 24.2 0.7 43 86-129 5-51 (205)
4 2z0b_A GDE5, KIAA1434, putativ 11.6 1E+02 0.0035 21.1 1.6 36 93-129 5-40 (131)
5 4a04_A T-box transcription fac 11.3 78 0.0027 23.7 1.0 27 65-92 47-73 (203)
6 3le4_A Microprocessor complex 10.5 1.9E+02 0.0065 18.6 2.5 24 38-62 30-62 (79)
7 1ac0_A Glucoamylase; hydrolase 9.2 1.6E+02 0.0056 19.0 2.0 32 98-130 8-39 (108)
8 1xbr_A Protein (T protein); co 8.2 1.3E+02 0.0045 22.1 1.2 27 65-92 33-59 (184)
9 2vqp_A Matrix protein; viral p 8.2 3.8E+02 0.013 20.7 3.9 27 82-112 3-29 (257)
10 1jb7_B Telomere-binding protei 7.9 84 0.0029 23.8 0.0 68 54-134 44-129 (260)
No 1
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=39.15 E-value=18 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=14.5
Q ss_pred CCCceeeccCCccCCCCCccc
Q psy14970 49 HGAPAYLSFPHFYQGDPSYSN 69 (137)
Q Consensus 49 ~g~Pv~~S~PHF~~~dp~l~~ 69 (137)
+..|+++++||+ |.+.|.+
T Consensus 77 F~~PViL~iPHc--a~~~W~~ 95 (118)
T 2kxr_A 77 FLKPVELRLPHC--DPKTWQN 95 (118)
T ss_dssp EEEEEEEEECCC--CTTSSCS
T ss_pred CcCCEEEEcCCC--Cccchhh
Confidence 346999999999 4666654
No 2
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=14.53 E-value=41 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=14.4
Q ss_pred CCCceeeccCCccCCCCCccc
Q psy14970 49 HGAPAYLSFPHFYQGDPSYSN 69 (137)
Q Consensus 49 ~g~Pv~~S~PHF~~~dp~l~~ 69 (137)
+..|+++++||+ |...|.+
T Consensus 91 F~kPViL~iPHc--A~~~W~~ 109 (146)
T 2kxs_A 91 FLKPVELRLPHC--DPKTWQN 109 (146)
T ss_dssp EEEEEEEEECCC--CGGGGSC
T ss_pred CcCCEEEEcCcC--CCcCCEE
Confidence 356999999998 4566654
No 3
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=13.24 E-value=54 Score=24.21 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred eeeecCCccceeeee--eeEeEE-eeccCCccc-ccCceeeccccccc
Q psy14970 86 VLEKNTGIPLQVNAR--LQINIL-LRKIKDLEG-LTEGTVTLGSYRPE 129 (137)
Q Consensus 86 ~iEP~TG~pL~~~~R--lQiNi~-v~~~~~~~~-~~~~~~~~~~~~~~ 129 (137)
.+||.||+..-.... +|+|=. ++...-+.+ .=++ .++|.|+++
T Consensus 5 ~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikv-Ya~GlYl~~ 51 (205)
T 4doo_A 5 VVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDV-YAFGVYADC 51 (205)
T ss_dssp EECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEE-EEEEEEEEH
T ss_pred cccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEE-EEEEEEeCH
Confidence 578888887765543 333322 222221110 1135 678999887
No 4
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=11.60 E-value=1e+02 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=23.4
Q ss_pred ccceeeeeeeEeEEeeccCCcccccCceeeccccccc
Q psy14970 93 IPLQVNARLQINILLRKIKDLEGLTEGTVTLGSYRPE 129 (137)
Q Consensus 93 ~pL~~~~RlQiNi~v~~~~~~~~~~~~~~~~~~~~~~ 129 (137)
..-.+..+|+++........+.+.++. .+||++-|+
T Consensus 5 s~~~v~V~F~v~~~~~~ge~v~vvGs~-~~LG~W~p~ 40 (131)
T 2z0b_A 5 SSGPSQVAFEIRGTLLPGEVFAICGSC-DALGNWNPQ 40 (131)
T ss_dssp -CCCEEEEEEEECCCCTTCEEEEEESS-GGGTTTCGG
T ss_pred CCCeEEEEEEEeeecCCCCEEEEEeCC-CcCCCCCcc
Confidence 333456666666655555666677776 778888885
No 5
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=11.28 E-value=78 Score=23.71 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=20.8
Q ss_pred CCccccccccCCCCCCCceeEeeeecCC
Q psy14970 65 PSYSNAVRGLSPNKSQHEFSIVLEKNTG 92 (137)
Q Consensus 65 p~l~~~v~Gl~Pd~e~H~~~i~iEP~TG 92 (137)
|.+.=.|.||.|+ .+..+.++++|...
T Consensus 47 P~l~~~vsGLdp~-~~Y~~~l~~~~~D~ 73 (203)
T 4a04_A 47 PTFQVKLFGMDPM-ADYMLLMDFVPVDD 73 (203)
T ss_dssp SCEEEEEESCCTT-SEEEEEEEEEESCS
T ss_pred CceEEEEeCCCcc-cCcEEEEEEEEccC
Confidence 3455689999998 56788899998764
No 6
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=10.45 E-value=1.9e+02 Score=18.62 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=18.9
Q ss_pred CCceeecCCCCCCCceee---------ccCCccC
Q psy14970 38 PSGIRDLSPCKHGAPAYL---------SFPHFYQ 62 (137)
Q Consensus 38 p~Gl~nls~C~~g~Pv~~---------S~PHF~~ 62 (137)
|.|-+-++--. |.|+|+ |.|.|+.
T Consensus 30 PeGW~~v~H~S-GmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 30 PDGWIMTFHNS-GVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CTTEEEEECTT-SSEEEEETTTTEEESSCCCCCT
T ss_pred CCccEEEEecC-CceEEEeccceEEeccCCeEec
Confidence 89999887776 999764 7777763
No 7
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=9.25 E-value=1.6e+02 Score=18.99 Aligned_cols=32 Identities=6% Similarity=0.025 Sum_probs=20.6
Q ss_pred eeeeeEeEEeeccCCcccccCceeecccccccc
Q psy14970 98 NARLQINILLRKIKDLEGLTEGTVTLGSYRPEI 130 (137)
Q Consensus 98 ~~RlQiNi~v~~~~~~~~~~~~~~~~~~~~~~~ 130 (137)
..+|+++........+.+.++. .+||++-|+-
T Consensus 8 ~V~F~v~~~t~~Ge~v~vvGs~-~~LG~W~~~~ 39 (108)
T 1ac0_A 8 AVTFDLTATTTYGENIYLVGSI-SQLGDWETSD 39 (108)
T ss_dssp CEEEEEECCCCSSCCEECCCSS-STTCSSSGGG
T ss_pred EEEEEEeeECCCCCEEEEEeCc-HHHCCCCHHH
Confidence 4455555555555666677766 7788887753
No 8
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=8.25 E-value=1.3e+02 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.0
Q ss_pred CCccccccccCCCCCCCceeEeeeecCC
Q psy14970 65 PSYSNAVRGLSPNKSQHEFSIVLEKNTG 92 (137)
Q Consensus 65 p~l~~~v~Gl~Pd~e~H~~~i~iEP~TG 92 (137)
|.+.=.|.||.|+ .+..+.++++|...
T Consensus 33 P~l~~~v~GLdp~-~~Y~v~l~~~~~D~ 59 (184)
T 1xbr_A 33 PVLKVSMSGLDPN-AMYTVLLDFVAADN 59 (184)
T ss_dssp SCCEEEEECSCTT-SEEEEEEEEEESSS
T ss_pred CccEEEEeCCCcc-cCeEEEEEEEEccC
Confidence 3455688999998 55677888888653
No 9
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=8.22 E-value=3.8e+02 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=18.9
Q ss_pred ceeEeeeecCCccceeeeeeeEeEEeeccCC
Q psy14970 82 EFSIVLEKNTGIPLQVNARLQINILLRKIKD 112 (137)
Q Consensus 82 ~~~i~iEP~TG~pL~~~~RlQiNi~v~~~~~ 112 (137)
++|+ ++-+-|+|--|. +|+|+. ++++.
T Consensus 3 EsY~-~~~y~GvpYTAA--VQ~~lv-EKd~~ 29 (257)
T 2vqp_A 3 ETYV-NKLHEGSTYTAA--VQYNVL-EKDDD 29 (257)
T ss_dssp EEEE-EECCCCSSEEEE--EEEEEE-ESSSS
T ss_pred hHhH-hHhccCCceeeE--EEeeee-eccCC
Confidence 4555 788899997665 799984 44443
No 10
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B 1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Probab=7.88 E-value=84 Score=23.81 Aligned_cols=68 Identities=25% Similarity=0.426 Sum_probs=36.0
Q ss_pred eeccCCccCCCCCcc-------ccccccC---CC---CCCCceeEeeeecCCccceeeeeeeEeEEeecc---CCccccc
Q psy14970 54 YLSFPHFYQGDPSYS-------NAVRGLS---PN---KSQHEFSIVLEKNTGIPLQVNARLQINILLRKI---KDLEGLT 117 (137)
Q Consensus 54 ~~S~PHF~~~dp~l~-------~~v~Gl~---Pd---~e~H~~~i~iEP~TG~pL~~~~RlQiNi~v~~~---~~~~~~~ 117 (137)
--|+|||+-.|-... ++|.-++ |+ -+.|+--|.|.-- ++.++++ +-+..+.
T Consensus 44 kesyphflvtdgyffv~p~ftkeav~efh~kfpnvnivdl~dkvivin~w-------------slelrrvnsaevftsya 110 (260)
T 1jb7_B 44 KESYPHFLVTDGYFFVAPYFTKEAVNEFHAKFPNVNIVDLTDKVIVINNW-------------SLELRRVNSAEVFTSYA 110 (260)
T ss_dssp EECSSSCEEESSSEEECEEECHHHHHHHHHHCTTCCGGGCTTCEEEEEEE-------------EEEEEECCTTTCSSCBT
T ss_pred hccCCceEEecceEEeeccccHHHHHHHHhhCCCCceEeccccEEEEecc-------------eeeeeecchHHHhHhhh
Confidence 459999998776542 3333221 33 3455555444322 2333333 4445555
Q ss_pred Cceee--cccccccccccc
Q psy14970 118 EGTVT--LGSYRPEIGERR 134 (137)
Q Consensus 118 ~~~~~--~~~~~~~~~~~~ 134 (137)
|+--. .-+|-|.+.||-
T Consensus 111 nlearlivhsfkpnlqerl 129 (260)
T 1jb7_B 111 NLEARLIVHSFKPNLQERL 129 (260)
T ss_dssp TEEEEEEEEEEEEETTCCC
T ss_pred chhheeeeeccCcchHhhc
Confidence 55433 357778777764
Done!