Query psy14970
Match_columns 137
No_of_seqs 108 out of 477
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 17:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bnba_ g.9.1.1 (A:) Beta-defe 24.7 7.9 0.00057 20.4 0.1 27 24-53 6-32 (38)
2 d1d0gr3 g.24.1.1 (R:102-128) D 24.7 12 0.00087 18.1 0.8 13 34-48 5-17 (27)
3 d1bdsa_ g.9.1.1 (A:) BDs-I def 21.6 17 0.0012 19.1 1.1 24 33-59 20-43 (43)
4 d1ea9c2 b.71.1.1 (C:504-583) M 20.8 54 0.004 18.7 3.7 52 40-98 27-78 (80)
5 d1wzla2 b.71.1.1 (A:503-585) M 11.3 35 0.0026 19.7 0.8 49 50-98 34-82 (83)
6 d3bmva2 b.3.1.1 (A:579-683) Cy 10.7 56 0.0041 19.8 1.7 34 96-130 5-39 (105)
7 d3b6oa1 c.55.3.5 (A:9-234) Thr 9.8 1.1E+02 0.0078 20.2 3.2 23 83-106 7-29 (226)
8 d1cyga2 b.3.1.1 (A:575-680) Cy 9.7 55 0.004 19.8 1.4 32 97-129 6-38 (106)
9 d2igia1 c.55.3.5 (A:1-180) Oli 9.4 1.3E+02 0.0097 18.2 3.4 26 82-108 7-32 (180)
10 d1y97a1 c.55.3.5 (A:1-228) Thr 9.2 1.6E+02 0.012 19.1 4.0 23 84-107 12-34 (228)
No 1
>d1bnba_ g.9.1.1 (A:) Beta-defensin, BD {Cow (Bos taurus), BD12 [TaxId: 9913]}
Probab=24.68 E-value=7.9 Score=20.44 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=20.5
Q ss_pred CCCCcccCCCCCCCCCceeecCCCCCCCce
Q psy14970 24 PDSSCYCPNNICSQPSGIRDLSPCKHGAPA 53 (137)
Q Consensus 24 p~n~cfC~~~~C~~p~Gl~nls~C~~g~Pv 53 (137)
--|+++|...-| |.-|-.++.|. |.||
T Consensus 6 ~~n~GiCvpirc--pg~mrQIGtCf-g~~V 32 (38)
T d1bnba_ 6 GRNGGVCIPIRC--PVPMRQIGTCF-GRPV 32 (38)
T ss_dssp TTTTSEEEESSC--CTTSEEEEEET-TTTE
T ss_pred EcCCeEEEeeeC--CcCceeeeeee-CCcc
Confidence 356788866668 57888899996 8776
No 2
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.67 E-value=12 Score=18.07 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=11.4
Q ss_pred CCCCCCceeecCCCC
Q psy14970 34 ICSQPSGIRDLSPCK 48 (137)
Q Consensus 34 ~C~~p~Gl~nls~C~ 48 (137)
.| |+|++.++.|.
T Consensus 5 gc--prg~vkv~dct 17 (27)
T d1d0gr3 5 GC--PRGMVKVGDCT 17 (27)
T ss_dssp SC--CTTCEEEECCB
T ss_pred CC--CCcceEeccCc
Confidence 47 69999999997
No 3
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=21.58 E-value=17 Score=19.14 Aligned_cols=24 Identities=33% Similarity=0.694 Sum_probs=16.9
Q ss_pred CCCCCCCceeecCCCCCCCceeeccCC
Q psy14970 33 NICSQPSGIRDLSPCKHGAPAYLSFPH 59 (137)
Q Consensus 33 ~~C~~p~Gl~nls~C~~g~Pv~~S~PH 59 (137)
+.| |.|---.|.|+ .-|-+-..||
T Consensus 20 gtc--pggygytsncy-kwpniccyph 43 (43)
T d1bdsa_ 20 GTC--PGGYGYTSNCY-KWPNICCYPH 43 (43)
T ss_dssp SSC--CTTTCCCCEEE-ETTEEEECCC
T ss_pred ccc--CCCcccccccc-cCCcccccCC
Confidence 346 46766677886 6787777777
No 4
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Probab=20.82 E-value=54 Score=18.72 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=35.5
Q ss_pred ceeecCCCCCCCceeeccCCccCCCCCccccccccCCCCCCCceeEeeeecCCccceee
Q psy14970 40 GIRDLSPCKHGAPAYLSFPHFYQGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIPLQVN 98 (137)
Q Consensus 40 Gl~nls~C~~g~Pv~~S~PHF~~~dp~l~~~v~Gl~Pd~e~H~~~i~iEP~TG~pL~~~ 98 (137)
=++|.| +.|.-+++| .++..+.+.+.|=.-..+.-...+.+.|+.+..|++.
T Consensus 27 Vv~N~S----~~~~tv~lp---~~~~~~~~l~~g~~~~~~~~~~tltLpp~~~~il~a~ 78 (80)
T d1ea9c2 27 VVMNND----KAGHTLTLP---VRHAQWTHLWQDDVLTAAHGQLTVKLPAYGFAVLKAS 78 (80)
T ss_dssp EEEECS----SSCEEEEEE---CCSSSCCEEBSTTCCEECCCSSEEEEEECSSCCCEEC
T ss_pred EEEECC----CCCEEEEec---CCCCeEEEeecCceeeccCCcEEEEECCccEEEEEEe
Confidence 356665 467778888 2466777777774333333445789999999998875
No 5
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Probab=11.31 E-value=35 Score=19.66 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=28.2
Q ss_pred CCceeeccCCccCCCCCccccccccCCCCCCCceeEeeeecCCccceee
Q psy14970 50 GAPAYLSFPHFYQGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIPLQVN 98 (137)
Q Consensus 50 g~Pv~~S~PHF~~~dp~l~~~v~Gl~Pd~e~H~~~i~iEP~TG~pL~~~ 98 (137)
..|.-+++|=...++..+.+.+.|=.-..+.-...+.+.|+.|..|...
T Consensus 34 ~~~~~v~lp~~~~~~~~~~dllsg~~~~~~~g~l~ltL~p~~~~IL~~~ 82 (83)
T d1wzla2 34 GEKQTVLLQVPESGGKTWLDCLTGEEVHGKQGQLKLTLRPYQGMILWNG 82 (83)
T ss_dssp SSCEEEEEECCGGGCSEEEETTTCCEEECBTTEEEEEECTTCEEEEECC
T ss_pred CccEEEEEcCccccceeeEEccCCcEEEecCCeEEEEECCCEEEEEEcC
Confidence 3555566664444455566655553222233445688888888887643
No 6
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=10.70 E-value=56 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=23.2
Q ss_pred eeeeeeeEe-EEeeccCCcccccCceeecccccccc
Q psy14970 96 QVNARLQIN-ILLRKIKDLEGLTEGTVTLGSYRPEI 130 (137)
Q Consensus 96 ~~~~RlQiN-i~v~~~~~~~~~~~~~~~~~~~~~~~ 130 (137)
++..+|++| ........+...++. ..||++-|+=
T Consensus 5 ~v~V~F~v~~~~t~~Gq~v~vvGs~-~~LG~W~~~~ 39 (105)
T d3bmva2 5 QICVRFVVNNASTVYGENVYLTGNV-AELGNWDTSK 39 (105)
T ss_dssp EEEEEEEEESCCCCTTCEEEEEESS-GGGTTTCGGG
T ss_pred EEEEEEEEcccccCCCCEEEEEeCc-HHHCCCCHHH
Confidence 356677776 356666667777776 7788887753
No 7
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.83 E-value=1.1e+02 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=16.4
Q ss_pred eeEeeeecCCccceeeeeeeEeEE
Q psy14970 83 FSIVLEKNTGIPLQVNARLQINIL 106 (137)
Q Consensus 83 ~~i~iEP~TG~pL~~~~RlQiNi~ 106 (137)
+++|+| +||.+-.-..-+|+-+.
T Consensus 7 v~~D~E-TTGl~~~~~~Iieia~i 29 (226)
T d3b6oa1 7 IFLDLE-ATGLPSSRPEVTELCLL 29 (226)
T ss_dssp EEEEEE-ESSCGGGCCCEEEEEEE
T ss_pred EEEEEE-CCCCCCCCCceEEEEEE
Confidence 468899 68987666666777654
No 8
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.71 E-value=55 Score=19.82 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=22.3
Q ss_pred eeeeeeEe-EEeeccCCcccccCceeeccccccc
Q psy14970 97 VNARLQIN-ILLRKIKDLEGLTEGTVTLGSYRPE 129 (137)
Q Consensus 97 ~~~RlQiN-i~v~~~~~~~~~~~~~~~~~~~~~~ 129 (137)
+..|||++ ........+.+.++. ..||++-|+
T Consensus 6 v~V~F~v~~~~t~~Gq~v~vvGs~-~~LG~W~~~ 38 (106)
T d1cyga2 6 VSVRFVVNNATTNLGQNIYIVGNV-YELGNWDTS 38 (106)
T ss_dssp EEEEEEEESCCCCSSCEEEEEESS-GGGBTTCGG
T ss_pred EEEEEEEcceEcCCCCEEEEEcCH-HHHCCCCHH
Confidence 45677875 455666677777776 788888776
No 9
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}
Probab=9.38 E-value=1.3e+02 Score=18.21 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=17.7
Q ss_pred ceeEeeeecCCccceeeeeeeEeEEee
Q psy14970 82 EFSIVLEKNTGIPLQVNARLQINILLR 108 (137)
Q Consensus 82 ~~~i~iEP~TG~pL~~~~RlQiNi~v~ 108 (137)
-.|+|+| +||.--....=+||=+.+-
T Consensus 7 lv~lD~E-TTGLdp~~d~IIeIaaV~~ 32 (180)
T d2igia1 7 LIWIDLE-MTGLDPERDRIIEIATLVT 32 (180)
T ss_dssp EEEEEEE-ESSSCTTTCCEEEEEEEEE
T ss_pred EEEEEEE-CCCCCCCCCeEEEEEEEEE
Confidence 3578999 8887555566777765443
No 10
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.21 E-value=1.6e+02 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=14.7
Q ss_pred eEeeeecCCccceeeeeeeEeEEe
Q psy14970 84 SIVLEKNTGIPLQVNARLQINILL 107 (137)
Q Consensus 84 ~i~iEP~TG~pL~~~~RlQiNi~v 107 (137)
++|+| +||..-.-..-+|+-+..
T Consensus 12 ~~D~E-TTGl~~~~~~Iieia~i~ 34 (228)
T d1y97a1 12 FLDLE-ATGLPSVEPEIAELSLFA 34 (228)
T ss_dssp EEEEE-ESSCGGGCCCEEEEEEEE
T ss_pred EEEEe-cCCcCCCCCCeEEEEEEE
Confidence 48888 778765555556665543
Done!