RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14970
         (137 letters)



>gnl|CDD|216316 pfam01130, CD36, CD36 family.  The CD36 family is thought to be a
           novel class of scavenger receptors. There is also
           evidence suggesting a possible role in signal
           transduction. CD36 is involved in cell adhesion.
          Length = 460

 Score =  150 bits (382), Expect = 1e-44
 Identities = 57/116 (49%), Positives = 73/116 (62%)

Query: 2   VHDLSGTLFVADKSVFDNGTQCPDSSCYCPNNICSQPSGIRDLSPCKHGAPAYLSFPHFY 61
            + + G  +V    VFDNGT  P++ C+C  N    PSG+ D+S C +GAP +LSFPHFY
Sbjct: 284 YNGIPGYRYVGPPDVFDNGTNNPENECFCVKNQDCLPSGLLDVSKCYYGAPIFLSFPHFY 343

Query: 62  QGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIPLQVNARLQINILLRKIKDLEGLT 117
             DPS   AV GL+PNK +HE  I +E  TG PLQ   RLQINIL+ K+K +  L 
Sbjct: 344 GADPSLLEAVEGLNPNKEKHETFIDIEPTTGTPLQAAKRLQINILVEKVKGISILK 399


>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase
          Superfamily (AAK), AK-Ectoine; this CD includes the
          N-terminal catalytic domain of the aspartokinase of the
          ectoine (1,4,5,6-tetrahydro-2-methyl
          pyrimidine-4-carboxylate) biosynthetic pathway found in
          Methylomicrobium alcaliphilum, Vibrio cholerae, and
          other various halotolerant or halophilic bacteria.
          Bacteria exposed to hyperosmotic stress accumulate
          organic solutes called 'compatible solutes'  of which
          ectoine, a heterocyclic amino acid, is one. Apart from
          its osmotic function, ectoine also exhibits a
          protective effect on proteins, nucleic acids and
          membranes against a variety of stress factors. de novo
          synthesis of ectoine starts with the phosphorylation of
          L-aspartate and shares its first two enzymatic steps
          with the biosynthesis of amino acids of the aspartate
          family: aspartokinase and L-aspartate-semialdehyde
          dehydrogenase. The M. alcaliphilum and the V. cholerae
          aspartokinases are encoded on the ectABCask operon.
          Length = 304

 Score = 30.9 bits (70), Expect = 0.18
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 2  VHDLSGTLFVADKSVFDNGTQCPDSSCYCPNNICSQPSGIRD--LSPCKHGAPAYLSFPH 59
          V  + GT   A  +V DN    PDS  Y    + S  SG+ +  L   K GAP    + H
Sbjct: 3  VEKIGGTSMSAFGAVLDNIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGI--YQH 60

Query: 60 FYQGDPSYSNAVRGL 74
          F   D ++  A+  L
Sbjct: 61 FVDADEAWREALSAL 75


>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
           5-phosphatases.  Inositol polyphosphate 5-phosphatases
           (5-phosphatases) are signal-modifying enzymes, which
           hydrolyze the 5-phosphate from the inositol ring of
           specific 5-position phosphorylated phosphoinositides
           (PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
           PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
           These enzymes are Mg2+-dependent, and belong to the
           large EEP (exonuclease/endonuclease/phosphatase)
           superfamily that contains functionally diverse enzymes
           that share a common catalytic mechanism of cleaving
           phosphodiester bonds. In addition to this INPP5c domain,
           5-phosphatases often contain additional domains and
           motifs, such as the SH2 domain, the Sac-1 domain, the
           proline-rich domain (PRD), CAAX, RhoGAP
           (RhoGTPase-activating protein), and SKICH [SKIP
           (skeletal muscle- and kidney-enriched inositol
           phosphatase) carboxyl homology] domains, that are
           important for protein-protein interactions and/or for
           the subcellular localization of these enzymes.
           5-phosphatases incorporate into large signaling
           complexes, and regulate diverse cellular processes
           including postsynaptic vesicular trafficking, insulin
           signaling, cell growth and survival, and endocytosis.
           Loss or gain of function of 5-phosphatases is implicated
           in certain human diseases. This family also contains a
           functionally unrelated nitric oxide transport protein,
           Cimex lectularius (bedbug) nitrophorin, which catalyzes
           a heme-assisted S-nitrosation of a proximal thiolate;
           the heme however binds at a site distinct from the
           active site of the 5-phosphatases.
          Length = 299

 Score = 26.5 bits (59), Expect = 5.1
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 23/102 (22%)

Query: 42  RDLSPCKHGAPAYLSFPH---FYQGD-----PSYSNAVRGLSPNKSQHEFSIVLEKNTGI 93
             L   +        F H   F+ GD      S  + VR L    SQ +   +LEK+   
Sbjct: 161 SKLKFYRGDPAIDSIFDHDVVFWFGDLNYRIDSTDDEVRKLI---SQGDLDDLLEKD--- 214

Query: 94  PLQVNARLQINILLRKIKDLEGLTEGTVTLG-SYRPEIGERR 134
                   Q+     K K  +G  E  +T   +Y+ + G   
Sbjct: 215 --------QLKKQKEKGKVFDGFQELPITFPPTYKFDPGTDE 248


>gnl|CDD|239027 cd02109, arch_bact_SO_family_Moco, bacterial and archael members of
           the sulfite oxidase (SO) family of molybdopterin binding
           domains. This molybdopterin cofactor (Moco) binding
           domain is found in a variety of oxidoreductases, main
           members of this family are nitrate reductase (NR) and
           sulfite oxidase (SO). Common features of all known
           members of this family are that they contain one single
           pterin cofactor and part of the coordination of the
           metal (Mo) is a cysteine ligand of the protein and that
           they catalyze the transfer of an oxygen to or from a
           lone pair of electrons on the substrate.  The specific
           function of this subgroup is unknown.
          Length = 180

 Score = 26.1 bits (58), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query: 42  RDLSPCKHGAPAYLSFPHFY 61
             L P +HG PA L  PH Y
Sbjct: 123 EPLPP-EHGGPARLVVPHLY 141


>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase.  Members of
           this family contain a sensor histidine kinase domain
           (pfam00512) and a domain found in bacterial signal
           proteins (pfam00672). This group is separated
           phylogenetically from related proteins with similar
           architecture and contains a number of proteins
           associated with heavy metal resistance efflux systems
           for copper, silver, cadmium, and/or zinc.
          Length = 457

 Score = 26.2 bits (58), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 46  PCKHGAPAYLS--FPHFYQGDPSYSNAVRG 73
           P     P +LS  F  FY+ DP+ SN+  G
Sbjct: 393 PGPGIPPEHLSRLFDRFYRVDPARSNSGEG 422


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,826,607
Number of extensions: 581866
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 7
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)