RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14970
         (137 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.23
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 27/85 (31%)

Query: 41  IRDLSP--CKHGAPAYLS-FPHFYQGDPS------YSN----------AVRGLSPNKSQH 81
            +DL         P  LS      +   +      + N          ++  L P + + 
Sbjct: 315 PQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 82  ---EFSIVLEKNTGIPLQVNARLQI 103
                S+    +  IP  +   L +
Sbjct: 374 MFDRLSV-FPPSAHIPTIL---LSL 394



 Score = 26.7 bits (58), Expect = 2.9
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 58  PHFYQGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIPLQV 97
           P+    DP Y   V  +     + E +++  K T + L++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI 570


>1p4p_A OSPB, outer surface protein B; intermolecular beta sheet, extended
           beta sheet, membrane protein; 2.00A {Borrelia
           burgdorferi} SCOP: b.76.1.1 PDB: 1rjl_C
          Length = 145

 Score = 28.2 bits (62), Expect = 0.59
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 89  KNTGIPLQVNARLQINILLRKIKDLEGLTEGTVTLGSY 126
           K TG      + L I+   +K KDL  LT+GT+T+  Y
Sbjct: 83  KKTGKWEDSTSTLTISADSKKTKDLVFLTDGTITVQQY 120


>2i5v_O Outer surface protein A; beta-sheet, de novo protein; HET: PG4;
           1.10A {Borrelia burgdorferi} PDB: 2g8c_O* 2pi3_O 2oyb_O
           2i5z_O* 2ol6_O 2oy5_O 3aum_O 2ol7_A 1osp_O 1fj1_E 3ckg_A
           2ol8_O 2oy1_O 3ckf_A
          Length = 251

 Score = 27.4 bits (60), Expect = 1.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 89  KNTGIPLQVNARLQINILLRKIKDLEGLTEGTVTLGSY 126
           K T       + L I +  +K KDL   +  T+T+  Y
Sbjct: 189 KKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQY 226


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 1.6
 Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 6/22 (27%)

Query: 108 RKIKDLEGLTEGTVTLGSYRPE 129
           + +K L+       +L  Y  +
Sbjct: 20  QALKKLQA------SLKLYADD 35


>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
           {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
          Length = 195

 Score = 26.6 bits (59), Expect = 2.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 19  NGTQCPDSSCYCPNNICSQPSGIRDLSPCKHGA 51
           +  Q   SS   P++I  +P    DL P ++  
Sbjct: 138 SVAQATSSSGEAPDSITWKPYDAADLDPTENPF 170


>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
           hyperthermophIle, GAPDH, hyperthermophilic dehydrog
           oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
           c.2.1.3 d.81.1.1
          Length = 340

 Score = 27.0 bits (59), Expect = 2.1
 Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 5/72 (6%)

Query: 46  PCKHGAPAYLSFPHFYQGDPSYSNAVRGLSPNKSQHEFSIVLEKNTGIPLQVNARLQINI 105
           P  H         +        + AV   +     H  +I L+        + + L+   
Sbjct: 190 PSHHAKDVNSVIRNL----DIATMAVIAPTTLMHMHFINITLKDKVEKK-DILSVLENTP 244

Query: 106 LLRKIKDLEGLT 117
            +  I       
Sbjct: 245 RIVLISSKYDAE 256


>3cji_A Polyprotein; virus capsid protein structure, ATP-binding,
           cytoplasm, cytoplasmic vesicle, helicase, hydrolase,
           membrane, nucleotide-binding; 2.30A {Seneca valley
           virus}
          Length = 263

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 57  FPHFYQGDPSYSNAVRGLSPNK 78
            P  + G    S+A RGL  + 
Sbjct: 191 LPVRWGGASKLSSATRGLPAHA 212


>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
           dimer, enzyme complex with COFA product, oxidoreductase;
           HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
           a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
          Length = 436

 Score = 26.0 bits (58), Expect = 4.5
 Identities = 3/23 (13%), Positives = 8/23 (34%), Gaps = 1/23 (4%)

Query: 95  LQVNARLQINILLRKIKDLEGLT 117
           ++ N+  Q+      I   +   
Sbjct: 294 MRSNSN-QVQKAFDLITSHDTRK 315


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,063,857
Number of extensions: 110559
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 22
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)