RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14970
         (137 letters)



>d1p4pa_ b.76.1.1 (A:) Outer surface protein B {Lyme disease
           spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 140

 Score = 28.2 bits (63), Expect = 0.18
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 89  KNTGIPLQVNARLQINILLRKIKDLEGLTEGTVTLGSY 126
           K TG      + L I+   +K KDL  LT+GT+T+  Y
Sbjct: 78  KKTGKWEDSTSTLTISADSKKTKDLVFLTDGTITVQQY 115


>d1ospo_ b.76.1.1 (O:) Outer surface protein A {Lyme disease
           spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 251

 Score = 26.7 bits (59), Expect = 0.89
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 89  KNTGIPLQVNARLQINILLRKIKDLEGLTEGTVTLGSY 126
           K T       + L I +  +K KDL    E T+T+  Y
Sbjct: 189 KKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQY 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,737
Number of extensions: 22485
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)