BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14971
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 139 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 197
Query: 110 PNGT 113
+G+
Sbjct: 198 QDGS 201
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN 111
DG KG+ PY+ IH+GAA + P E++ QL GGRL+ G +G Q + D+ N
Sbjct: 153 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG-PDGGSQYMQQYDKDAN 211
Query: 112 G 112
G
Sbjct: 212 G 212
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 46 KNVSV--KDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSL 103
KNV V DGSKG + PYD+I + A ++P+ ++ QLK GG+L+ G ++ +Q L
Sbjct: 140 KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH-LWQEL 198
Query: 104 AYIDRLPNGTYLREKSG 120
+ + +G ++ G
Sbjct: 199 LEVRKTKDGIKIKNHGG 215
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
DG G E PYD+I + EVP+ QLK GGR++
Sbjct: 134 DGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVI 172
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 47 NVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94
NVS + DG +G P+D I + AA E+P ++ QL GG LV G
Sbjct: 126 NVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG 175
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 48 VSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94
V V DG+ G+ PYD I+ AA ++P+ ++ QLK GG+L+ G
Sbjct: 132 VIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG 178
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 59 EEGPYDIIHLGAACIEVPKEILAQLKPGGRLVF 91
E G +D IH+GA+ E+P+ ++ L G+L+
Sbjct: 159 ELGLFDAIHVGASASELPEILVDLLAENGKLII 191
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN 111
DG+ G+ EE PYD + + A + + QLK GG + G+ G Q L + + N
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIGV--GRVQKLYKVIKKGN 181
Query: 112 GTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQ 145
L E G +GGL + D+ + ++
Sbjct: 182 SPSL-ENLGEVXFGRIGGLYGFYDDYDDIEFRVN 214
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 59 EEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHN-GHYQSLAYIDRLPNGTYLR 116
E P D+ A IE+P +L GGR G N G +S A I + T LR
Sbjct: 9 ERLPSDLARRATAIIEMPDGVLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLR 67
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 25.8 bits (55), Expect = 9.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMD 138
I A++ +V +G G + S +D L TY +S I +GG I E+
Sbjct: 563 IAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSA 622
Query: 139 EYKVQLQGKYTKYHQIPI 156
EY L G++ + H P+
Sbjct: 623 EY---LSGRWAEVHGYPL 637
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,758,799
Number of Sequences: 62578
Number of extensions: 191610
Number of successful extensions: 358
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 11
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)