Query psy14971
Match_columns 156
No_of_seqs 181 out of 1661
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 4.1E-27 9E-32 180.6 15.7 124 1-133 83-207 (209)
2 PF01135 PCMT: Protein-L-isoas 99.9 3.9E-26 8.4E-31 176.7 12.2 125 1-131 83-208 (209)
3 PRK13942 protein-L-isoaspartat 99.9 4.1E-21 9E-26 148.6 17.3 125 1-133 87-212 (212)
4 KOG1661|consensus 99.9 3.1E-21 6.7E-26 147.5 13.2 133 1-140 93-236 (237)
5 PRK13944 protein-L-isoaspartat 99.8 1E-19 2.2E-24 140.1 16.9 122 1-128 83-205 (205)
6 TIGR00080 pimt protein-L-isoas 99.8 2.6E-19 5.5E-24 138.6 17.2 124 1-132 88-212 (215)
7 PRK00312 pcm protein-L-isoaspa 99.8 3.3E-17 7.1E-22 126.3 17.0 121 1-131 89-210 (212)
8 COG2242 CobL Precorrin-6B meth 99.7 2E-17 4.3E-22 125.0 7.4 134 1-140 45-180 (187)
9 PRK13943 protein-L-isoaspartat 99.6 1.9E-14 4.1E-19 117.9 15.3 126 1-132 91-218 (322)
10 COG2519 GCD14 tRNA(1-methylade 99.5 4.7E-14 1E-18 111.1 5.4 125 1-146 105-232 (256)
11 COG4122 Predicted O-methyltran 99.4 4.2E-13 9E-18 104.4 8.3 91 2-95 71-168 (219)
12 COG2226 UbiE Methylase involve 99.4 7.4E-13 1.6E-17 104.3 9.3 90 1-95 62-158 (238)
13 PF01209 Ubie_methyltran: ubiE 99.4 7E-13 1.5E-17 104.2 7.7 90 1-94 58-154 (233)
14 PRK00377 cbiT cobalt-precorrin 99.4 1.2E-12 2.5E-17 100.1 7.1 136 1-142 51-193 (198)
15 PRK08287 cobalt-precorrin-6Y C 99.3 6.8E-12 1.5E-16 94.9 9.1 137 1-144 42-182 (187)
16 PLN02476 O-methyltransferase 99.3 4.5E-12 9.7E-17 101.9 8.0 91 1-94 129-229 (278)
17 PLN02781 Probable caffeoyl-CoA 99.3 7.5E-12 1.6E-16 98.4 8.5 91 1-94 79-179 (234)
18 PF01596 Methyltransf_3: O-met 99.3 1.6E-12 3.5E-17 100.4 4.6 91 1-94 56-156 (205)
19 TIGR00138 gidB 16S rRNA methyl 99.3 2.4E-11 5.2E-16 92.1 10.5 90 1-96 53-145 (181)
20 PF12847 Methyltransf_18: Meth 99.3 2.1E-11 4.5E-16 84.1 8.3 89 1-93 12-111 (112)
21 PLN02589 caffeoyl-CoA O-methyl 99.3 9.1E-12 2E-16 98.7 7.3 91 1-94 90-191 (247)
22 PRK00107 gidB 16S rRNA methylt 99.3 5.3E-11 1.1E-15 90.7 11.1 91 1-96 56-148 (187)
23 PF08704 GCD14: tRNA methyltra 99.2 1.4E-10 3.1E-15 91.9 10.1 92 1-96 51-149 (247)
24 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.7E-10 3.7E-15 92.1 10.3 91 2-96 83-202 (264)
25 PRK07402 precorrin-6B methylas 99.2 6.1E-11 1.3E-15 90.3 7.0 135 1-140 51-189 (196)
26 PF13847 Methyltransf_31: Meth 99.2 2.9E-10 6.3E-15 83.1 9.6 89 2-95 15-112 (152)
27 TIGR02469 CbiT precorrin-6Y C5 99.2 9.2E-10 2E-14 76.7 11.7 89 2-94 31-123 (124)
28 PLN02233 ubiquinone biosynthes 99.2 5.5E-10 1.2E-14 89.0 11.5 92 1-95 84-184 (261)
29 PRK14901 16S rRNA methyltransf 99.1 4.5E-10 9.7E-15 95.5 11.1 90 2-95 264-386 (434)
30 TIGR02752 MenG_heptapren 2-hep 99.1 9E-10 2E-14 85.5 11.9 89 2-94 57-152 (231)
31 PF05175 MTS: Methyltransferas 99.1 6.4E-10 1.4E-14 83.1 9.8 90 1-95 42-142 (170)
32 PRK14903 16S rRNA methyltransf 99.1 7.2E-10 1.6E-14 94.2 10.3 90 2-95 249-368 (431)
33 PRK11873 arsM arsenite S-adeno 99.1 1.2E-09 2.6E-14 87.0 10.6 88 2-93 89-183 (272)
34 PRK14904 16S rRNA methyltransf 99.0 2.4E-09 5.2E-14 91.3 11.5 90 2-96 262-380 (445)
35 PF08241 Methyltransf_11: Meth 99.0 1.4E-09 3E-14 72.0 7.9 81 2-91 8-95 (95)
36 PRK14902 16S rRNA methyltransf 99.0 3.5E-09 7.6E-14 90.2 11.5 90 2-95 262-381 (444)
37 PLN03075 nicotianamine synthas 99.0 2.2E-09 4.7E-14 87.1 9.4 86 7-94 142-234 (296)
38 PRK11933 yebU rRNA (cytosine-C 99.0 4.6E-09 1E-13 90.1 10.3 90 2-95 126-244 (470)
39 TIGR00563 rsmB ribosomal RNA s 98.9 9.1E-09 2E-13 87.3 11.2 91 2-96 250-371 (426)
40 PF13659 Methyltransf_26: Meth 98.9 2.3E-09 5E-14 74.4 6.2 90 1-94 11-116 (117)
41 PLN02244 tocopherol O-methyltr 98.9 1.3E-08 2.8E-13 84.0 11.7 87 2-93 130-223 (340)
42 PRK10901 16S rRNA methyltransf 98.9 1.4E-08 3E-13 86.3 11.7 87 2-94 256-373 (427)
43 TIGR00091 tRNA (guanine-N(7)-) 98.9 6.8E-09 1.5E-13 79.1 8.4 90 2-95 28-134 (194)
44 TIGR03533 L3_gln_methyl protei 98.9 1.7E-08 3.7E-13 81.5 11.1 91 1-95 132-253 (284)
45 KOG1663|consensus 98.9 5.1E-09 1.1E-13 81.6 7.6 91 1-94 84-184 (237)
46 KOG1540|consensus 98.9 1.7E-08 3.7E-13 79.9 10.2 92 1-93 111-214 (296)
47 PRK00121 trmB tRNA (guanine-N( 98.9 1.4E-08 3E-13 78.0 8.7 90 2-95 52-158 (202)
48 PRK11805 N5-glutamine S-adenos 98.9 2.9E-08 6.4E-13 81.0 10.8 90 2-95 145-265 (307)
49 PRK04457 spermidine synthase; 98.9 9.9E-09 2.2E-13 82.0 7.8 89 2-94 78-178 (262)
50 TIGR01177 conserved hypothetic 98.8 2.9E-08 6.3E-13 81.5 10.7 89 2-96 194-297 (329)
51 PRK15451 tRNA cmo(5)U34 methyl 98.8 2.6E-08 5.6E-13 78.7 9.7 87 2-93 68-164 (247)
52 COG2264 PrmA Ribosomal protein 98.8 1.6E-08 3.5E-13 82.0 8.0 87 1-92 173-262 (300)
53 TIGR00537 hemK_rel_arch HemK-r 98.8 5.9E-08 1.3E-12 72.8 10.6 85 2-95 31-142 (179)
54 PRK11036 putative S-adenosyl-L 98.8 2.1E-08 4.5E-13 79.4 8.4 87 2-94 56-150 (255)
55 PRK04266 fibrillarin; Provisio 98.8 5.4E-08 1.2E-12 76.2 10.6 84 2-92 84-175 (226)
56 PLN02232 ubiquinone biosynthes 98.8 1.7E-08 3.8E-13 74.8 7.5 75 18-95 1-83 (160)
57 COG0144 Sun tRNA and rRNA cyto 98.8 5.7E-08 1.2E-12 80.8 11.2 90 2-95 169-290 (355)
58 PRK11207 tellurite resistance 98.8 6.7E-08 1.4E-12 73.9 10.5 85 2-93 42-134 (197)
59 smart00828 PKS_MT Methyltransf 98.8 5.2E-08 1.1E-12 75.2 9.7 88 2-94 11-105 (224)
60 PRK14103 trans-aconitate 2-met 98.8 3.1E-08 6.8E-13 78.3 8.6 81 2-94 41-127 (255)
61 PRK15001 SAM-dependent 23S rib 98.8 1E-07 2.2E-12 79.9 11.2 88 1-93 239-340 (378)
62 PRK01683 trans-aconitate 2-met 98.8 7E-08 1.5E-12 76.1 9.6 82 2-93 43-130 (258)
63 TIGR03534 RF_mod_PrmC protein- 98.7 1.4E-07 3.1E-12 73.6 11.1 89 2-95 99-219 (251)
64 PLN02396 hexaprenyldihydroxybe 98.7 4.7E-08 1E-12 80.4 8.5 87 2-94 143-236 (322)
65 TIGR00406 prmA ribosomal prote 98.7 9.4E-08 2E-12 77.2 10.0 87 1-93 170-259 (288)
66 TIGR00536 hemK_fam HemK family 98.7 1.1E-07 2.5E-12 76.5 10.2 90 2-95 126-246 (284)
67 COG4106 Tam Trans-aconitate me 98.7 2E-08 4.3E-13 77.9 5.3 84 2-95 42-131 (257)
68 PRK00517 prmA ribosomal protei 98.7 9.4E-08 2E-12 75.6 9.1 80 2-93 131-213 (250)
69 PRK14967 putative methyltransf 98.7 1.4E-07 3E-12 73.3 9.7 87 2-95 48-161 (223)
70 PRK15128 23S rRNA m(5)C1962 me 98.7 4.8E-08 1E-12 82.3 7.5 90 1-95 231-341 (396)
71 PRK08317 hypothetical protein; 98.7 2.4E-07 5.2E-12 71.1 10.6 88 2-94 31-125 (241)
72 PRK09489 rsmC 16S ribosomal RN 98.7 2.4E-07 5.1E-12 76.8 10.9 87 1-94 207-304 (342)
73 TIGR03704 PrmC_rel_meth putati 98.7 2.2E-07 4.7E-12 73.8 10.3 87 2-95 98-218 (251)
74 TIGR00477 tehB tellurite resis 98.7 2.8E-07 6.1E-12 70.3 10.5 84 2-93 42-133 (195)
75 PF08242 Methyltransf_12: Meth 98.7 6.3E-09 1.4E-13 70.5 1.2 73 13-89 19-99 (99)
76 PF06325 PrmA: Ribosomal prote 98.7 4.5E-08 9.7E-13 79.5 6.1 84 1-92 172-258 (295)
77 COG4123 Predicted O-methyltran 98.7 1.1E-07 2.4E-12 75.4 7.9 90 2-94 56-171 (248)
78 TIGR00740 methyltransferase, p 98.7 3.1E-07 6.8E-12 71.8 10.4 86 2-93 65-161 (239)
79 PRK14121 tRNA (guanine-N(7)-)- 98.6 2.5E-07 5.4E-12 77.7 10.1 90 2-95 134-237 (390)
80 PF13649 Methyltransf_25: Meth 98.6 4.6E-08 1E-12 66.6 4.6 76 7-87 15-101 (101)
81 PLN02336 phosphoethanolamine N 98.6 3.1E-07 6.8E-12 78.6 10.7 86 2-94 278-370 (475)
82 PRK00216 ubiE ubiquinone/menaq 98.6 5E-07 1.1E-11 69.7 10.7 90 2-94 63-159 (239)
83 PTZ00098 phosphoethanolamine N 98.6 2.6E-07 5.6E-12 73.7 9.2 75 14-94 75-157 (263)
84 PTZ00146 fibrillarin; Provisio 98.6 4.4E-07 9.6E-12 73.5 10.6 86 2-93 144-237 (293)
85 PRK09328 N5-glutamine S-adenos 98.6 4.9E-07 1.1E-11 71.8 10.6 89 2-95 120-240 (275)
86 PRK12335 tellurite resistance 98.6 5.1E-07 1.1E-11 72.8 10.5 84 2-93 132-223 (287)
87 COG2813 RsmC 16S RNA G1207 met 98.6 6.8E-07 1.5E-11 72.5 10.9 87 2-94 170-267 (300)
88 PRK14966 unknown domain/N5-glu 98.6 7.3E-07 1.6E-11 75.5 11.5 89 2-95 263-383 (423)
89 PRK00811 spermidine synthase; 98.6 2.7E-07 5.8E-12 74.5 8.6 77 14-94 100-192 (283)
90 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2E-07 4.2E-12 83.8 8.6 90 1-95 549-658 (702)
91 PLN02490 MPBQ/MSBQ methyltrans 98.6 3.2E-07 7E-12 75.9 9.1 83 2-92 125-214 (340)
92 PRK10909 rsmD 16S rRNA m(2)G96 98.6 3.6E-07 7.8E-12 70.3 8.6 89 1-94 64-160 (199)
93 PF05401 NodS: Nodulation prot 98.6 1.7E-07 3.8E-12 71.8 6.7 83 2-94 55-147 (201)
94 TIGR02716 C20_methyl_CrtF C-20 98.5 9.5E-07 2.1E-11 71.6 10.6 86 2-93 161-254 (306)
95 COG2227 UbiG 2-polyprenyl-3-me 98.5 1.8E-07 3.9E-12 73.5 5.4 86 2-94 71-162 (243)
96 PRK13168 rumA 23S rRNA m(5)U19 98.5 6E-07 1.3E-11 76.6 9.0 117 1-127 308-430 (443)
97 smart00138 MeTrc Methyltransfe 98.5 5.3E-07 1.1E-11 72.1 8.1 78 14-94 132-243 (264)
98 PRK01544 bifunctional N5-gluta 98.5 1.4E-06 3E-11 75.7 11.2 90 1-94 149-270 (506)
99 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.3E-06 2.8E-11 66.7 9.8 87 2-94 51-144 (223)
100 PRK14968 putative methyltransf 98.5 2.4E-06 5.3E-11 63.6 11.1 89 2-95 35-150 (188)
101 PRK10258 biotin biosynthesis p 98.5 7.1E-07 1.5E-11 70.2 8.5 72 14-94 64-141 (251)
102 PRK11088 rrmA 23S rRNA methylt 98.5 1.2E-06 2.7E-11 70.0 10.0 84 2-95 97-183 (272)
103 TIGR02072 BioC biotin biosynth 98.5 8.1E-07 1.8E-11 68.3 8.6 85 2-94 46-136 (240)
104 PF02475 Met_10: Met-10+ like- 98.5 7E-07 1.5E-11 68.8 7.9 85 2-90 113-199 (200)
105 PRK06922 hypothetical protein; 98.5 1.2E-06 2.5E-11 77.7 10.1 88 2-94 430-538 (677)
106 COG1092 Predicted SAM-dependen 98.5 4.2E-07 9.1E-12 76.5 6.9 92 1-96 228-339 (393)
107 COG2520 Predicted methyltransf 98.5 9.2E-07 2E-11 73.1 8.6 90 2-95 200-291 (341)
108 COG2890 HemK Methylase of poly 98.4 1.4E-06 3E-11 70.4 9.3 89 1-95 121-240 (280)
109 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 2.8E-07 6E-12 74.5 5.2 89 2-94 98-220 (283)
110 PF02353 CMAS: Mycolic acid cy 98.4 9.2E-07 2E-11 71.2 8.2 85 2-94 74-167 (273)
111 PLN02366 spermidine synthase 98.4 1.7E-06 3.7E-11 70.8 9.1 78 14-94 115-207 (308)
112 KOG1122|consensus 98.4 2.5E-06 5.4E-11 71.8 10.1 89 2-94 254-372 (460)
113 PRK15068 tRNA mo(5)U34 methylt 98.4 2.7E-06 5.8E-11 69.9 10.2 86 1-92 133-225 (322)
114 TIGR00452 methyltransferase, p 98.4 2.7E-06 5.8E-11 69.8 10.1 86 2-93 133-225 (314)
115 COG1041 Predicted DNA modifica 98.4 1.9E-06 4.1E-11 71.1 9.1 87 2-94 209-311 (347)
116 TIGR00417 speE spermidine synt 98.4 1.3E-06 2.8E-11 69.9 7.7 78 14-94 96-187 (270)
117 PF10672 Methyltrans_SAM: S-ad 98.4 5.6E-07 1.2E-11 72.9 4.9 90 2-96 135-241 (286)
118 PRK01581 speE spermidine synth 98.4 1.6E-06 3.4E-11 72.4 7.6 79 13-94 173-269 (374)
119 cd02440 AdoMet_MTases S-adenos 98.3 6.4E-06 1.4E-10 53.8 9.2 76 13-92 20-103 (107)
120 PRK03522 rumB 23S rRNA methylu 98.3 2.7E-06 5.7E-11 69.6 8.5 115 2-128 185-303 (315)
121 PRK03612 spermidine synthase; 98.3 2.4E-06 5.2E-11 74.4 7.9 77 15-94 322-416 (521)
122 KOG2915|consensus 98.3 6.9E-06 1.5E-10 65.8 9.5 87 1-92 116-209 (314)
123 PRK04338 N(2),N(2)-dimethylgua 98.3 4.7E-06 1E-10 70.0 8.9 90 1-94 68-159 (382)
124 COG2521 Predicted archaeal met 98.3 5.5E-07 1.2E-11 70.8 3.1 91 2-97 146-249 (287)
125 PLN02823 spermine synthase 98.3 3.9E-06 8.5E-11 69.4 8.3 79 13-94 126-221 (336)
126 PRK11705 cyclopropane fatty ac 98.2 8.1E-06 1.7E-10 68.6 9.4 81 2-94 179-268 (383)
127 COG2230 Cfa Cyclopropane fatty 98.2 1.1E-05 2.3E-10 65.2 9.6 86 2-96 84-179 (283)
128 TIGR00479 rumA 23S rRNA (uraci 98.2 6.4E-06 1.4E-10 69.9 8.4 87 2-94 304-397 (431)
129 TIGR02085 meth_trns_rumB 23S r 98.2 8.9E-06 1.9E-10 68.1 9.0 88 2-95 245-336 (374)
130 PRK11188 rrmJ 23S rRNA methylt 98.2 1.1E-05 2.4E-10 62.4 8.4 78 2-94 63-166 (209)
131 TIGR01983 UbiG ubiquinone bios 98.2 1.5E-05 3.2E-10 61.4 8.8 87 2-94 57-150 (224)
132 PLN02672 methionine S-methyltr 98.2 1.4E-05 3.1E-10 74.5 10.0 66 2-71 130-212 (1082)
133 TIGR03438 probable methyltrans 98.1 2.4E-05 5.2E-10 63.6 10.1 78 14-94 88-178 (301)
134 KOG4300|consensus 98.1 1E-05 2.2E-10 62.6 7.3 78 13-94 98-183 (252)
135 TIGR03840 TMPT_Se_Te thiopurin 98.1 3E-05 6.5E-10 60.2 9.8 77 14-93 56-152 (213)
136 PF03059 NAS: Nicotianamine sy 98.1 1.2E-05 2.6E-10 64.8 7.2 85 7-93 139-230 (276)
137 PLN02336 phosphoethanolamine N 98.1 1.9E-05 4E-10 67.7 8.7 83 2-93 49-142 (475)
138 KOG1270|consensus 98.1 5.6E-06 1.2E-10 66.0 5.0 88 2-95 101-197 (282)
139 COG2263 Predicted RNA methylas 98.1 2.5E-05 5.5E-10 59.5 8.2 63 1-72 56-118 (198)
140 PF02390 Methyltransf_4: Putat 98.1 2.9E-05 6.4E-10 59.5 8.7 90 2-95 29-135 (195)
141 PRK05134 bifunctional 3-demeth 98.1 3.5E-05 7.5E-10 59.8 9.2 76 14-94 70-152 (233)
142 TIGR03587 Pse_Me-ase pseudamin 98.0 3.1E-05 6.7E-10 59.7 8.5 64 2-76 55-119 (204)
143 KOG2899|consensus 98.0 1E-05 2.2E-10 64.0 5.8 35 1-36 69-104 (288)
144 PRK05031 tRNA (uracil-5-)-meth 98.0 1.3E-05 2.9E-10 66.8 6.7 88 1-94 217-321 (362)
145 COG0421 SpeE Spermidine syntha 98.0 2.9E-05 6.3E-10 62.8 8.3 81 12-94 98-191 (282)
146 TIGR00095 RNA methyltransferas 98.0 4.2E-05 9E-10 58.3 8.2 90 1-94 60-160 (189)
147 PRK13256 thiopurine S-methyltr 98.0 4.7E-05 1E-09 59.7 8.6 79 12-94 63-164 (226)
148 COG0742 N6-adenine-specific me 98.0 8E-05 1.7E-09 56.8 9.3 90 1-94 54-155 (187)
149 TIGR02021 BchM-ChlM magnesium 98.0 8E-05 1.7E-09 57.4 9.5 81 2-91 67-156 (219)
150 PF01564 Spermine_synth: Sperm 98.0 9.8E-06 2.1E-10 64.2 4.5 78 14-94 100-192 (246)
151 PF03602 Cons_hypoth95: Conser 98.0 7.4E-06 1.6E-10 62.2 3.6 91 1-95 53-155 (183)
152 smart00650 rADc Ribosomal RNA 98.0 8E-05 1.7E-09 55.3 9.1 83 2-92 25-112 (169)
153 PRK00536 speE spermidine synth 97.9 9.1E-05 2E-09 59.4 9.8 88 2-95 82-173 (262)
154 TIGR02143 trmA_only tRNA (urac 97.9 3.4E-05 7.5E-10 64.1 7.5 88 1-94 208-312 (353)
155 COG0220 Predicted S-adenosylme 97.9 9.5E-05 2.1E-09 58.1 9.3 89 2-95 60-166 (227)
156 PLN02585 magnesium protoporphy 97.9 8.8E-05 1.9E-09 60.9 9.3 68 1-77 155-227 (315)
157 TIGR00308 TRM1 tRNA(guanine-26 97.9 6.8E-05 1.5E-09 62.9 8.2 89 2-94 56-148 (374)
158 PF01269 Fibrillarin: Fibrilla 97.9 7.2E-05 1.6E-09 58.5 7.8 85 4-94 88-179 (229)
159 TIGR00438 rrmJ cell division p 97.9 6.9E-05 1.5E-09 56.6 7.4 78 2-94 44-147 (188)
160 PRK06202 hypothetical protein; 97.9 0.00011 2.4E-09 57.2 8.7 69 2-77 72-144 (232)
161 PF13578 Methyltransf_24: Meth 97.9 1.6E-06 3.5E-11 59.4 -1.5 87 2-92 8-104 (106)
162 PF01170 UPF0020: Putative RNA 97.8 0.00013 2.9E-09 55.1 8.5 69 2-73 40-117 (179)
163 PF13489 Methyltransf_23: Meth 97.8 3.5E-05 7.6E-10 55.6 5.2 68 15-96 45-118 (161)
164 KOG1271|consensus 97.8 0.00015 3.3E-09 55.3 8.4 80 14-96 91-184 (227)
165 PRK05785 hypothetical protein; 97.8 0.00018 3.8E-09 56.2 9.0 72 1-86 62-140 (226)
166 PF03848 TehB: Tellurite resis 97.8 0.00026 5.6E-09 54.3 9.0 73 15-93 53-133 (192)
167 PRK13255 thiopurine S-methyltr 97.7 0.00023 5E-09 55.4 8.8 76 13-91 58-153 (218)
168 PHA03411 putative methyltransf 97.7 0.00011 2.4E-09 59.3 7.0 63 1-73 75-137 (279)
169 PF02527 GidB: rRNA small subu 97.7 0.00014 3.1E-09 55.3 7.2 90 2-96 60-151 (184)
170 PF04816 DUF633: Family of unk 97.7 0.00012 2.7E-09 56.6 6.9 87 2-91 9-99 (205)
171 COG2265 TrmA SAM-dependent met 97.7 0.0002 4.3E-09 61.2 8.6 79 12-94 313-397 (432)
172 PRK07580 Mg-protoporphyrin IX 97.7 0.0004 8.8E-09 53.4 9.6 56 14-76 85-141 (230)
173 PHA03412 putative methyltransf 97.7 0.00034 7.4E-09 55.3 8.9 62 2-73 61-125 (241)
174 PF05958 tRNA_U5-meth_tr: tRNA 97.7 9E-05 1.9E-09 61.6 5.7 90 1-96 207-312 (352)
175 PF06962 rRNA_methylase: Putat 97.6 0.00019 4.1E-09 52.3 6.0 75 16-93 1-92 (140)
176 PF09445 Methyltransf_15: RNA 97.6 7.1E-05 1.5E-09 55.9 3.9 53 15-70 22-77 (163)
177 PRK10611 chemotaxis methyltran 97.5 0.00038 8.2E-09 56.5 7.4 78 15-94 148-263 (287)
178 PF07021 MetW: Methionine bios 97.5 0.0002 4.4E-09 54.8 5.4 83 2-95 23-111 (193)
179 COG4076 Predicted RNA methylas 97.5 0.00021 4.5E-09 54.9 5.3 83 1-91 43-133 (252)
180 KOG2904|consensus 97.5 0.0011 2.5E-08 53.4 9.8 89 2-94 160-286 (328)
181 PF08003 Methyltransf_9: Prote 97.5 0.00097 2.1E-08 54.5 9.2 87 2-93 127-219 (315)
182 KOG3420|consensus 97.4 0.00031 6.7E-09 51.8 5.0 66 2-73 60-125 (185)
183 PRK11727 23S rRNA mA1618 methy 97.4 0.0016 3.4E-08 53.7 9.6 59 13-73 137-200 (321)
184 PF00891 Methyltransf_2: O-met 97.4 0.0012 2.7E-08 51.5 8.3 79 2-94 112-200 (241)
185 PTZ00338 dimethyladenosine tra 97.3 0.001 2.3E-08 54.1 7.9 64 2-73 48-112 (294)
186 PF05724 TPMT: Thiopurine S-me 97.3 0.00066 1.4E-08 52.9 6.2 73 14-89 59-151 (218)
187 KOG1499|consensus 97.3 0.00095 2.1E-08 55.2 7.0 86 1-91 71-165 (346)
188 COG0116 Predicted N6-adenine-s 97.3 0.0011 2.4E-08 55.6 7.4 76 16-94 256-345 (381)
189 PRK00050 16S rRNA m(4)C1402 me 97.3 0.00043 9.3E-09 56.4 4.7 67 2-74 32-102 (296)
190 PF01739 CheR: CheR methyltran 97.2 0.0014 3E-08 50.4 7.2 77 15-94 65-176 (196)
191 PF05185 PRMT5: PRMT5 arginine 97.2 0.0011 2.3E-08 57.0 7.0 86 1-90 197-294 (448)
192 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0045 9.8E-08 55.9 10.6 79 15-96 257-350 (702)
193 KOG2730|consensus 97.1 0.00031 6.7E-09 55.0 2.3 54 15-71 117-174 (263)
194 PRK01544 bifunctional N5-gluta 97.1 0.0032 7E-08 54.9 8.8 90 2-95 359-464 (506)
195 PRK10742 putative methyltransf 97.1 0.0016 3.5E-08 51.8 6.3 69 1-74 99-176 (250)
196 COG1064 AdhP Zn-dependent alco 97.0 0.0021 4.6E-08 53.3 6.9 77 2-93 179-259 (339)
197 PF01861 DUF43: Protein of unk 97.0 0.011 2.4E-07 46.8 10.6 86 6-96 59-152 (243)
198 COG3963 Phospholipid N-methylt 97.0 0.0018 4E-08 48.7 5.5 78 6-93 66-156 (194)
199 COG1352 CheR Methylase of chem 97.0 0.0066 1.4E-07 48.9 9.0 81 14-94 129-242 (268)
200 COG0357 GidB Predicted S-adeno 97.0 0.0032 6.9E-08 49.1 6.9 88 2-94 79-169 (215)
201 PRK14896 ksgA 16S ribosomal RN 96.9 0.0092 2E-07 47.4 9.4 62 2-73 41-102 (258)
202 TIGR00755 ksgA dimethyladenosi 96.9 0.0084 1.8E-07 47.4 9.1 80 2-91 41-124 (253)
203 TIGR02081 metW methionine bios 96.9 0.0058 1.3E-07 46.2 7.6 70 14-94 36-110 (194)
204 KOG1500|consensus 96.9 0.0044 9.5E-08 51.6 7.2 88 1-94 188-283 (517)
205 COG2384 Predicted SAM-dependen 96.8 0.0071 1.5E-07 47.3 7.8 68 2-72 28-95 (226)
206 COG4262 Predicted spermidine s 96.8 0.0079 1.7E-07 50.6 8.2 81 14-96 313-410 (508)
207 TIGR00006 S-adenosyl-methyltra 96.8 0.0023 5E-08 52.4 5.0 66 2-73 33-103 (305)
208 TIGR00478 tly hemolysin TlyA f 96.8 0.0043 9.3E-08 48.8 6.3 85 1-95 86-173 (228)
209 COG1889 NOP1 Fibrillarin-like 96.8 0.012 2.6E-07 45.6 8.4 83 5-94 92-181 (231)
210 KOG1541|consensus 96.7 0.011 2.3E-07 46.6 7.6 75 13-96 71-163 (270)
211 PRK00274 ksgA 16S ribosomal RN 96.6 0.012 2.5E-07 47.2 7.6 63 1-72 53-115 (272)
212 TIGR01444 fkbM_fam methyltrans 96.4 0.014 3E-07 41.5 6.6 49 2-54 10-58 (143)
213 PF03291 Pox_MCEL: mRNA cappin 96.3 0.015 3.3E-07 48.1 7.0 82 14-96 85-189 (331)
214 KOG1596|consensus 96.3 0.013 2.7E-07 46.8 6.1 80 5-94 172-262 (317)
215 KOG1975|consensus 96.2 0.019 4.1E-07 47.5 6.6 82 15-96 141-240 (389)
216 PF04989 CmcI: Cephalosporin h 96.1 0.024 5.3E-07 43.9 6.6 81 7-93 53-147 (206)
217 PF05891 Methyltransf_PK: AdoM 96.0 0.011 2.4E-07 46.1 4.6 76 14-93 78-161 (218)
218 PF00107 ADH_zinc_N: Zinc-bind 96.0 0.025 5.4E-07 39.4 6.1 82 2-95 3-91 (130)
219 PF10294 Methyltransf_16: Puta 96.0 0.07 1.5E-06 39.9 8.8 89 2-95 57-158 (173)
220 PF02384 N6_Mtase: N-6 DNA Met 96.0 0.016 3.5E-07 46.9 5.6 78 13-94 76-184 (311)
221 PF12147 Methyltransf_20: Puta 95.9 0.085 1.8E-06 43.1 9.3 80 15-97 162-253 (311)
222 KOG2361|consensus 95.9 0.021 4.5E-07 45.4 5.5 74 14-92 97-182 (264)
223 COG0030 KsgA Dimethyladenosine 95.8 0.043 9.3E-07 44.0 7.1 63 2-72 42-105 (259)
224 COG0275 Predicted S-adenosylme 95.8 0.018 3.9E-07 47.1 5.0 67 2-73 36-107 (314)
225 KOG1709|consensus 95.8 0.091 2E-06 41.4 8.6 89 1-96 112-209 (271)
226 PF07279 DUF1442: Protein of u 95.8 0.054 1.2E-06 42.3 7.3 76 13-91 68-146 (218)
227 COG1063 Tdh Threonine dehydrog 95.7 0.013 2.8E-07 48.6 4.1 85 2-94 181-270 (350)
228 KOG2198|consensus 95.7 0.081 1.8E-06 44.3 8.6 78 14-95 183-298 (375)
229 KOG1562|consensus 95.6 0.019 4.2E-07 46.8 4.5 78 14-92 145-235 (337)
230 PRK04148 hypothetical protein; 95.5 0.11 2.3E-06 37.7 7.5 67 14-91 39-107 (134)
231 COG0500 SmtA SAM-dependent met 95.1 0.58 1.3E-05 31.1 10.0 77 15-95 73-157 (257)
232 PF01795 Methyltransf_5: MraW 95.1 0.029 6.4E-07 46.0 4.0 66 2-73 33-104 (310)
233 TIGR02987 met_A_Alw26 type II 95.1 0.15 3.3E-06 44.5 8.6 54 15-72 64-122 (524)
234 PF10354 DUF2431: Domain of un 95.0 0.16 3.4E-06 38.0 7.6 91 2-96 6-128 (166)
235 PF04445 SAM_MT: Putative SAM- 95.0 0.11 2.3E-06 41.1 6.8 68 5-74 90-163 (234)
236 KOG3010|consensus 94.9 0.024 5.2E-07 45.0 3.0 76 14-92 55-135 (261)
237 KOG2187|consensus 94.7 0.045 9.8E-07 47.6 4.3 78 14-95 405-491 (534)
238 PF13679 Methyltransf_32: Meth 94.6 0.23 5E-06 35.7 7.4 86 1-91 36-129 (141)
239 PF05219 DREV: DREV methyltran 94.6 0.17 3.7E-06 40.6 7.2 68 14-95 116-190 (265)
240 PF08123 DOT1: Histone methyla 94.6 0.11 2.5E-06 40.1 6.0 88 2-92 54-157 (205)
241 KOG2671|consensus 94.6 0.036 7.8E-07 46.2 3.3 60 8-71 226-293 (421)
242 COG0293 FtsJ 23S rRNA methylas 94.4 0.38 8.3E-06 37.3 8.5 75 5-94 61-160 (205)
243 KOG0820|consensus 94.4 0.29 6.3E-06 39.7 8.0 64 2-72 70-133 (315)
244 PF02005 TRM: N2,N2-dimethylgu 94.4 0.078 1.7E-06 44.7 4.9 80 12-94 72-155 (377)
245 PRK09880 L-idonate 5-dehydroge 94.3 0.17 3.8E-06 41.2 6.9 83 2-93 182-266 (343)
246 PF01728 FtsJ: FtsJ-like methy 94.3 0.013 2.7E-07 43.8 0.1 78 2-94 36-140 (181)
247 COG3897 Predicted methyltransf 94.2 0.095 2.1E-06 40.5 4.6 83 2-93 91-178 (218)
248 PF04672 Methyltransf_19: S-ad 94.1 0.27 5.8E-06 39.6 7.3 87 7-97 88-194 (267)
249 KOG3191|consensus 94.1 0.23 5E-06 38.1 6.5 91 2-98 55-173 (209)
250 cd08230 glucose_DH Glucose deh 94.1 0.2 4.4E-06 41.0 6.8 81 2-93 185-269 (355)
251 PF06080 DUF938: Protein of un 94.0 0.16 3.4E-06 39.4 5.6 76 15-93 50-141 (204)
252 COG4798 Predicted methyltransf 93.3 0.17 3.7E-06 39.3 4.6 88 2-93 60-166 (238)
253 KOG1253|consensus 93.1 0.2 4.3E-06 43.6 5.2 84 8-94 128-217 (525)
254 TIGR03439 methyl_EasF probable 92.9 0.83 1.8E-05 37.7 8.6 77 14-94 104-198 (319)
255 COG1568 Predicted methyltransf 92.5 0.25 5.5E-06 40.3 4.8 65 3-71 163-230 (354)
256 KOG3178|consensus 92.3 0.61 1.3E-05 38.8 7.0 78 6-94 191-276 (342)
257 PF00398 RrnaAD: Ribosomal RNA 92.2 0.61 1.3E-05 37.0 6.8 46 2-56 42-88 (262)
258 KOG0024|consensus 92.0 0.66 1.4E-05 38.5 6.7 83 2-93 182-273 (354)
259 KOG1269|consensus 92.0 0.26 5.7E-06 41.4 4.5 77 14-93 133-215 (364)
260 COG4976 Predicted methyltransf 91.9 0.041 8.9E-07 43.7 -0.3 75 15-98 148-230 (287)
261 PRK09424 pntA NAD(P) transhydr 91.2 2.5 5.4E-05 37.2 9.9 83 2-94 177-286 (509)
262 PRK11524 putative methyltransf 90.6 0.27 5.8E-06 39.6 3.2 49 46-94 9-81 (284)
263 TIGR02822 adh_fam_2 zinc-bindi 90.6 2 4.3E-05 34.9 8.3 70 7-92 184-253 (329)
264 TIGR01202 bchC 2-desacetyl-2-h 90.6 1.2 2.5E-05 35.9 6.9 73 2-92 157-230 (308)
265 KOG0023|consensus 90.4 0.52 1.1E-05 39.1 4.7 85 2-95 194-281 (360)
266 COG1867 TRM1 N2,N2-dimethylgua 90.3 1.2 2.5E-05 37.6 6.7 76 16-95 78-156 (380)
267 KOG2352|consensus 89.8 0.48 1E-05 41.1 4.2 81 13-97 318-420 (482)
268 cd08237 ribitol-5-phosphate_DH 89.7 1.6 3.6E-05 35.6 7.2 63 15-92 190-255 (341)
269 PF05148 Methyltransf_8: Hypot 89.5 0.61 1.3E-05 36.4 4.2 48 48-95 108-160 (219)
270 PHA01634 hypothetical protein 88.8 2.4 5.2E-05 30.8 6.5 60 2-70 40-100 (156)
271 KOG1501|consensus 88.6 1.2 2.7E-05 38.6 5.8 87 1-91 77-173 (636)
272 KOG1227|consensus 87.6 0.51 1.1E-05 38.8 2.8 84 2-91 206-295 (351)
273 cd08238 sorbose_phosphate_red 87.4 3.1 6.7E-05 34.9 7.5 84 7-94 195-289 (410)
274 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.0 0.54 1.2E-05 37.7 2.6 49 47-95 137-201 (256)
275 PF07942 N2227: N2227-like pro 86.7 0.92 2E-05 36.6 3.8 49 46-95 146-203 (270)
276 COG0286 HsdM Type I restrictio 86.3 5.3 0.00011 34.8 8.5 67 2-72 199-274 (489)
277 TIGR03366 HpnZ_proposed putati 86.1 1.5 3.3E-05 34.6 4.8 82 2-93 133-218 (280)
278 KOG2352|consensus 85.4 3.4 7.5E-05 36.0 6.8 76 14-94 71-162 (482)
279 PF05971 Methyltransf_10: Prot 85.2 3.8 8.3E-05 33.6 6.7 60 14-75 126-190 (299)
280 PF06859 Bin3: Bicoid-interact 84.6 0.24 5.1E-06 34.7 -0.5 32 62-93 1-44 (110)
281 PF09243 Rsm22: Mitochondrial 84.5 5.2 0.00011 32.1 7.2 62 12-77 56-117 (274)
282 cd05188 MDR Medium chain reduc 84.2 2.6 5.6E-05 32.1 5.2 76 7-94 153-233 (271)
283 cd08254 hydroxyacyl_CoA_DH 6-h 83.5 5.1 0.00011 31.9 6.8 76 7-92 184-262 (338)
284 PRK13699 putative methylase; P 83.4 0.99 2.1E-05 35.3 2.5 49 46-94 2-73 (227)
285 cd08242 MDR_like Medium chain 82.0 9.2 0.0002 30.4 7.7 69 8-91 175-243 (319)
286 cd08293 PTGR2 Prostaglandin re 81.6 3.2 7E-05 33.4 5.0 75 7-92 174-253 (345)
287 PF07091 FmrO: Ribosomal RNA m 81.6 5.7 0.00012 31.8 6.2 58 10-73 125-182 (251)
288 KOG3115|consensus 81.2 7.4 0.00016 30.6 6.5 89 2-94 70-184 (249)
289 COG0686 Ald Alanine dehydrogen 81.1 10 0.00022 31.7 7.6 114 12-134 189-308 (371)
290 TIGR02825 B4_12hDH leukotriene 80.8 9.2 0.0002 30.6 7.4 74 7-92 158-236 (325)
291 cd08281 liver_ADH_like1 Zinc-d 80.7 2.7 5.8E-05 34.7 4.3 79 7-93 210-290 (371)
292 PLN03154 putative allyl alcoho 80.0 11 0.00025 30.8 7.8 76 7-92 178-257 (348)
293 TIGR03451 mycoS_dep_FDH mycoth 79.6 2.8 6.1E-05 34.3 4.0 79 7-93 195-276 (358)
294 KOG1331|consensus 79.5 1.8 3.9E-05 35.3 2.7 72 13-94 64-144 (293)
295 KOG2940|consensus 79.5 2.3 5E-05 34.0 3.3 74 14-93 95-174 (325)
296 cd08239 THR_DH_like L-threonin 79.4 3.3 7.2E-05 33.3 4.4 77 7-93 182-262 (339)
297 PF05711 TylF: Macrocin-O-meth 79.2 1 2.3E-05 35.8 1.3 64 26-93 141-212 (248)
298 PRK11760 putative 23S rRNA C24 78.5 9.5 0.00021 32.0 6.8 49 14-73 233-281 (357)
299 PF14740 DUF4471: Domain of un 77.9 1.9 4.1E-05 35.2 2.5 48 46-93 202-254 (289)
300 PLN02514 cinnamyl-alcohol dehy 77.7 9.7 0.00021 31.2 6.7 76 7-92 199-274 (357)
301 PF05430 Methyltransf_30: S-ad 77.1 0.54 1.2E-05 33.5 -0.8 49 46-94 33-91 (124)
302 TIGR03201 dearomat_had 6-hydro 77.1 4.2 9.2E-05 33.1 4.4 80 2-92 179-271 (349)
303 PRK10309 galactitol-1-phosphat 76.0 5.6 0.00012 32.2 4.8 78 7-92 179-259 (347)
304 KOG3045|consensus 74.7 6 0.00013 32.2 4.4 51 46-96 212-267 (325)
305 PF04378 RsmJ: Ribosomal RNA s 74.7 2.9 6.3E-05 33.3 2.7 84 2-91 67-162 (245)
306 COG5379 BtaA S-adenosylmethion 74.6 4.5 9.8E-05 33.5 3.8 68 17-93 289-366 (414)
307 cd08285 NADP_ADH NADP(H)-depen 74.5 29 0.00064 28.0 8.7 76 7-93 185-266 (351)
308 PF11599 AviRa: RRNA methyltra 74.5 5.5 0.00012 31.4 4.1 34 2-35 63-98 (246)
309 PLN02178 cinnamyl-alcohol dehy 73.7 10 0.00022 31.5 5.9 75 7-92 197-272 (375)
310 COG4017 Uncharacterized protei 73.5 9.7 0.00021 29.7 5.1 69 6-90 59-127 (254)
311 cd00315 Cyt_C5_DNA_methylase C 73.2 11 0.00024 30.1 5.8 62 2-74 11-74 (275)
312 PF02153 PDH: Prephenate dehyd 73.1 6.6 0.00014 31.1 4.4 73 7-94 4-79 (258)
313 PLN02740 Alcohol dehydrogenase 72.9 17 0.00037 30.1 7.0 74 7-92 217-299 (381)
314 cd08291 ETR_like_1 2-enoyl thi 72.7 34 0.00073 27.3 8.6 74 7-93 163-242 (324)
315 PLN02586 probable cinnamyl alc 72.4 12 0.00025 30.9 5.9 31 62-92 247-277 (360)
316 cd05285 sorbitol_DH Sorbitol d 72.2 30 0.00064 27.8 8.2 76 7-92 181-264 (343)
317 TIGR00561 pntA NAD(P) transhyd 71.5 33 0.00072 30.3 8.7 80 8-97 183-288 (511)
318 cd08283 FDH_like_1 Glutathione 71.5 28 0.0006 28.8 8.0 79 7-93 203-306 (386)
319 PRK01747 mnmC bifunctional tRN 71.3 11 0.00024 33.8 6.0 49 46-94 149-207 (662)
320 PLN02827 Alcohol dehydrogenase 71.0 11 0.00024 31.3 5.5 76 7-92 212-294 (378)
321 cd08255 2-desacetyl-2-hydroxye 70.5 36 0.00078 26.3 8.1 74 7-93 116-190 (277)
322 cd08295 double_bond_reductase_ 69.6 34 0.00073 27.5 7.9 75 7-92 171-250 (338)
323 PRK11524 putative methyltransf 68.7 10 0.00022 30.4 4.6 33 2-36 220-252 (284)
324 TIGR02819 fdhA_non_GSH formald 68.6 16 0.00034 30.7 5.9 78 7-93 204-299 (393)
325 cd00401 AdoHcyase S-adenosyl-L 67.9 17 0.00038 31.1 6.1 63 14-92 225-288 (413)
326 TIGR00518 alaDH alanine dehydr 67.7 19 0.00041 30.2 6.2 75 15-97 191-271 (370)
327 COG0275 Predicted S-adenosylme 67.6 4 8.6E-05 33.6 2.0 29 65-93 213-244 (314)
328 KOG2360|consensus 66.9 12 0.00026 31.9 4.8 64 6-73 230-295 (413)
329 PF02254 TrkA_N: TrkA-N domain 66.7 33 0.00073 22.9 6.4 78 7-95 13-98 (116)
330 COG1189 Predicted rRNA methyla 66.2 27 0.00058 27.9 6.4 83 2-95 92-180 (245)
331 PRK08324 short chain dehydroge 66.0 27 0.00058 31.6 7.2 57 10-72 442-508 (681)
332 cd08294 leukotriene_B4_DH_like 65.8 13 0.00029 29.4 4.8 73 7-92 163-240 (329)
333 PF11899 DUF3419: Protein of u 65.3 7.5 0.00016 32.9 3.3 53 39-94 273-335 (380)
334 cd08231 MDR_TM0436_like Hypoth 64.5 43 0.00093 27.1 7.7 78 7-93 196-280 (361)
335 PF03141 Methyltransf_29: Puta 64.5 7.5 0.00016 34.1 3.3 35 60-94 179-220 (506)
336 cd08296 CAD_like Cinnamyl alco 63.9 23 0.00051 28.4 6.0 75 7-93 182-259 (333)
337 PRK15001 SAM-dependent 23S rib 63.6 57 0.0012 27.6 8.3 80 2-92 56-141 (378)
338 cd08277 liver_alcohol_DH_like 63.1 16 0.00035 29.9 4.9 77 7-93 203-286 (365)
339 PRK08306 dipicolinate synthase 63.0 22 0.00047 28.9 5.5 67 14-93 175-241 (296)
340 PRK05786 fabG 3-ketoacyl-(acyl 62.3 64 0.0014 24.1 8.8 78 10-93 25-135 (238)
341 cd08298 CAD2 Cinnamyl alcohol 61.9 70 0.0015 25.3 8.4 70 7-92 186-255 (329)
342 TIGR00692 tdh L-threonine 3-de 61.7 13 0.00027 30.0 4.0 33 61-93 229-261 (340)
343 cd08233 butanediol_DH_like (2R 61.6 14 0.00031 29.8 4.3 78 8-93 192-272 (351)
344 PRK08945 putative oxoacyl-(acy 61.3 28 0.00061 26.4 5.7 59 10-72 32-102 (247)
345 COG0604 Qor NADPH:quinone redu 61.1 9.8 0.00021 31.3 3.3 85 2-96 156-244 (326)
346 cd08300 alcohol_DH_class_III c 60.4 25 0.00054 28.8 5.6 77 7-93 205-288 (368)
347 cd05565 PTS_IIB_lactose PTS_II 59.5 16 0.00035 24.9 3.6 65 25-94 15-79 (99)
348 TIGR02818 adh_III_F_hyde S-(hy 59.0 15 0.00032 30.3 4.0 82 2-93 198-287 (368)
349 PF09960 DUF2194: Uncharacteri 58.6 36 0.00077 30.6 6.5 77 17-96 57-139 (585)
350 cd08232 idonate-5-DH L-idonate 58.5 28 0.0006 27.8 5.5 76 7-93 184-262 (339)
351 KOG2539|consensus 58.3 47 0.001 29.1 6.9 77 14-94 226-316 (491)
352 cd05278 FDH_like Formaldehyde 57.6 20 0.00043 28.7 4.5 75 7-92 186-266 (347)
353 PRK13699 putative methylase; P 56.7 25 0.00055 27.3 4.8 33 2-36 175-207 (227)
354 cd08261 Zn_ADH7 Alcohol dehydr 55.3 22 0.00047 28.5 4.3 77 7-92 178-257 (337)
355 cd08286 FDH_like_ADH2 formalde 54.8 1.1E+02 0.0024 24.5 8.6 78 7-92 185-265 (345)
356 PF03269 DUF268: Caenorhabditi 54.2 11 0.00024 28.4 2.2 17 78-94 96-112 (177)
357 cd08301 alcohol_DH_plants Plan 52.6 55 0.0012 26.7 6.4 78 7-93 206-289 (369)
358 PF06690 DUF1188: Protein of u 52.3 1.2E+02 0.0026 24.3 7.8 67 6-88 56-122 (252)
359 PRK07806 short chain dehydroge 51.3 1E+02 0.0022 23.2 8.6 81 9-94 25-135 (248)
360 COG1062 AdhC Zn-dependent alco 51.2 24 0.00052 29.7 3.9 79 8-94 205-286 (366)
361 KOG0822|consensus 50.8 29 0.00063 31.0 4.6 75 11-90 392-475 (649)
362 PRK06940 short chain dehydroge 50.1 1.1E+02 0.0023 24.0 7.4 62 7-73 17-87 (275)
363 PF13602 ADH_zinc_N_2: Zinc-bi 50.0 3.1 6.8E-05 28.5 -1.2 33 60-93 17-51 (127)
364 KOG2798|consensus 49.4 20 0.00042 30.0 3.1 46 46-91 240-294 (369)
365 PRK09422 ethanol-active dehydr 49.4 27 0.00059 27.8 4.0 70 15-93 188-261 (338)
366 TIGR01963 PHB_DH 3-hydroxybuty 48.7 88 0.0019 23.5 6.7 59 9-72 20-88 (255)
367 PRK07831 short chain dehydroge 48.2 79 0.0017 24.2 6.4 60 10-72 38-107 (262)
368 PF00072 Response_reg: Respons 47.9 30 0.00065 22.4 3.5 73 17-95 1-80 (112)
369 COG1023 Gnd Predicted 6-phosph 47.7 1.5E+02 0.0032 24.1 7.7 87 8-98 17-123 (300)
370 PRK12939 short chain dehydroge 47.4 1.2E+02 0.0026 22.7 8.1 57 11-72 28-94 (250)
371 cd05564 PTS_IIB_chitobiose_lic 46.7 36 0.00078 22.7 3.7 65 25-94 14-78 (96)
372 cd08278 benzyl_alcohol_DH Benz 46.7 34 0.00074 28.0 4.3 75 7-93 205-285 (365)
373 cd05281 TDH Threonine dehydrog 46.3 1.3E+02 0.0028 24.0 7.6 32 61-92 230-261 (341)
374 PRK05599 hypothetical protein; 46.1 1.3E+02 0.0027 23.0 7.2 56 13-72 22-87 (246)
375 cd08245 CAD Cinnamyl alcohol d 46.0 1.5E+02 0.0032 23.4 8.1 74 8-93 182-256 (330)
376 PRK06914 short chain dehydroge 45.9 1.1E+02 0.0023 23.7 6.8 61 9-72 22-91 (280)
377 cd08235 iditol_2_DH_like L-idi 45.4 30 0.00065 27.6 3.7 76 7-94 184-266 (343)
378 PRK06125 short chain dehydroge 45.1 1.3E+02 0.0027 23.0 7.1 59 10-72 27-91 (259)
379 PF03721 UDPG_MGDP_dh_N: UDP-g 45.1 24 0.00051 26.6 2.9 31 1-31 8-40 (185)
380 PF05050 Methyltransf_21: Meth 44.9 47 0.001 23.3 4.4 25 9-33 18-42 (167)
381 KOG0022|consensus 44.8 34 0.00073 28.7 3.9 75 8-92 212-293 (375)
382 PLN02702 L-idonate 5-dehydroge 44.4 1.2E+02 0.0027 24.5 7.3 77 7-92 200-284 (364)
383 PRK07024 short chain dehydroge 44.3 1E+02 0.0022 23.6 6.4 57 10-72 22-88 (257)
384 COG0745 OmpR Response regulato 43.6 24 0.00053 27.5 2.8 62 16-84 2-66 (229)
385 cd05283 CAD1 Cinnamyl alcohol 43.0 1.7E+02 0.0037 23.3 8.0 69 15-93 194-263 (337)
386 cd08243 quinone_oxidoreductase 42.4 84 0.0018 24.4 5.8 75 7-92 162-237 (320)
387 PRK12429 3-hydroxybutyrate deh 42.0 1.5E+02 0.0032 22.3 8.7 59 9-72 23-91 (258)
388 PRK05808 3-hydroxybutyryl-CoA 41.9 46 0.001 26.3 4.3 73 14-94 26-119 (282)
389 PRK05854 short chain dehydroge 41.5 1.7E+02 0.0036 23.5 7.5 60 10-72 34-103 (313)
390 PF11968 DUF3321: Putative met 41.2 33 0.00072 26.9 3.2 35 60-94 102-150 (219)
391 PRK06194 hypothetical protein; 41.2 1.4E+02 0.003 23.1 6.9 59 10-73 26-94 (287)
392 TIGR00745 apbA_panE 2-dehydrop 41.1 1.5E+02 0.0033 23.1 7.1 33 60-92 57-92 (293)
393 PRK08217 fabG 3-ketoacyl-(acyl 41.0 1.5E+02 0.0032 22.2 6.9 58 10-72 25-92 (253)
394 PTZ00357 methyltransferase; Pr 40.9 1.2E+02 0.0026 28.5 6.9 77 10-88 724-830 (1072)
395 PLN03209 translocon at the inn 40.5 1E+02 0.0023 27.7 6.5 68 2-72 90-169 (576)
396 PRK08340 glucose-1-dehydrogena 40.5 1.5E+02 0.0032 22.7 6.8 57 10-72 20-86 (259)
397 PRK08703 short chain dehydroge 40.5 1.5E+02 0.0032 22.2 6.8 59 10-72 26-97 (239)
398 cd08263 Zn_ADH10 Alcohol dehyd 40.4 45 0.00097 27.2 4.1 33 61-93 255-287 (367)
399 TIGR00853 pts-lac PTS system, 40.4 44 0.00096 22.3 3.4 65 25-94 18-82 (95)
400 cd05279 Zn_ADH1 Liver alcohol 40.2 56 0.0012 26.7 4.6 83 2-93 196-285 (365)
401 TIGR00006 S-adenosyl-methyltra 40.1 25 0.00054 28.9 2.5 16 78-93 225-240 (305)
402 PRK10083 putative oxidoreducta 39.9 1.2E+02 0.0025 24.2 6.4 70 15-92 187-258 (339)
403 cd05286 QOR2 Quinone oxidoredu 39.6 39 0.00086 26.0 3.5 73 8-93 157-235 (320)
404 PRK06139 short chain dehydroge 39.5 1.1E+02 0.0025 24.9 6.3 58 10-72 27-94 (330)
405 COG0771 MurD UDP-N-acetylmuram 39.2 83 0.0018 27.4 5.6 59 6-73 22-80 (448)
406 PF09857 DUF2084: Uncharacteri 38.6 80 0.0017 21.0 4.2 34 75-109 6-39 (85)
407 PF08351 DUF1726: Domain of un 38.3 55 0.0012 21.9 3.5 35 61-95 10-47 (92)
408 PF07993 NAD_binding_4: Male s 38.0 55 0.0012 25.3 4.1 68 1-72 5-97 (249)
409 KOG3201|consensus 37.4 66 0.0014 24.5 4.1 81 12-95 52-142 (201)
410 PRK05476 S-adenosyl-L-homocyst 37.3 1.7E+02 0.0038 25.2 7.2 63 14-92 235-298 (425)
411 PRK07109 short chain dehydroge 36.9 1.4E+02 0.003 24.2 6.4 58 10-72 28-95 (334)
412 PRK05708 2-dehydropantoate 2-r 36.9 2.2E+02 0.0048 22.9 7.6 74 14-92 25-103 (305)
413 PRK01438 murD UDP-N-acetylmura 36.5 2.5E+02 0.0054 24.0 8.2 51 13-73 38-89 (480)
414 PRK08277 D-mannonate oxidoredu 36.4 1.5E+02 0.0032 22.9 6.3 57 10-71 30-96 (278)
415 PRK05867 short chain dehydroge 36.3 1.6E+02 0.0035 22.3 6.5 58 10-72 29-96 (253)
416 KOG4058|consensus 36.1 1.1E+02 0.0023 23.1 5.0 73 15-92 96-171 (199)
417 COG3320 Putative dehydrogenase 35.9 1.5E+02 0.0033 25.3 6.5 70 1-74 9-99 (382)
418 PRK13394 3-hydroxybutyrate deh 35.6 1.5E+02 0.0032 22.5 6.1 59 9-72 26-94 (262)
419 PLN02668 indole-3-acetate carb 35.6 42 0.0009 28.6 3.1 14 81-94 225-238 (386)
420 cd05284 arabinose_DH_like D-ar 35.4 70 0.0015 25.4 4.4 75 7-92 186-265 (340)
421 COG2130 Putative NADP-dependen 35.2 98 0.0021 25.8 5.1 77 7-92 170-248 (340)
422 PRK06522 2-dehydropantoate 2-r 35.2 2.2E+02 0.0048 22.3 7.7 73 14-92 23-99 (304)
423 PRK13771 putative alcohol dehy 34.8 1.2E+02 0.0025 24.1 5.6 73 8-93 183-255 (334)
424 PRK08594 enoyl-(acyl carrier p 34.6 2.1E+02 0.0046 22.0 8.7 59 10-72 29-97 (257)
425 PRK13687 hypothetical protein; 34.4 1E+02 0.0022 20.5 4.2 33 76-109 7-39 (85)
426 cd08289 MDR_yhfp_like Yhfp put 34.3 1.5E+02 0.0032 23.3 6.1 75 7-93 166-243 (326)
427 cd08236 sugar_DH NAD(P)-depend 34.2 78 0.0017 25.3 4.5 33 61-93 226-258 (343)
428 PRK07523 gluconate 5-dehydroge 34.0 2.1E+02 0.0045 21.7 6.8 59 9-72 29-97 (255)
429 PF08468 MTS_N: Methyltransfer 33.9 70 0.0015 23.5 3.8 46 46-94 56-106 (155)
430 PF12682 Flavodoxin_4: Flavodo 33.8 30 0.00064 25.3 1.8 40 59-98 70-114 (156)
431 KOG3924|consensus 33.6 1.1E+02 0.0025 26.3 5.4 91 2-94 204-309 (419)
432 PRK09496 trkA potassium transp 33.6 2E+02 0.0043 24.1 7.0 51 13-72 253-307 (453)
433 PRK05396 tdh L-threonine 3-deh 33.4 77 0.0017 25.3 4.4 34 61-94 231-264 (341)
434 PRK06949 short chain dehydroge 33.4 1.6E+02 0.0034 22.2 6.0 58 10-72 29-96 (258)
435 PRK07478 short chain dehydroge 33.2 2.1E+02 0.0046 21.6 7.0 58 10-72 26-93 (254)
436 PRK07102 short chain dehydroge 32.9 2E+02 0.0044 21.5 6.4 59 10-72 21-86 (243)
437 PRK07326 short chain dehydroge 32.6 1.8E+02 0.004 21.5 6.2 57 10-72 26-92 (237)
438 PRK14106 murD UDP-N-acetylmura 32.6 2.6E+02 0.0057 23.5 7.6 56 9-73 23-79 (450)
439 PRK07832 short chain dehydroge 32.5 2.3E+02 0.0049 21.8 6.8 59 10-72 20-88 (272)
440 PRK07097 gluconate 5-dehydroge 32.5 2.3E+02 0.0049 21.7 7.1 59 9-72 29-97 (265)
441 PF02737 3HCDH_N: 3-hydroxyacy 32.4 83 0.0018 23.4 4.1 23 14-36 22-44 (180)
442 PRK05866 short chain dehydroge 32.4 2.5E+02 0.0055 22.1 7.2 58 10-72 60-127 (293)
443 cd08265 Zn_ADH3 Alcohol dehydr 32.3 84 0.0018 25.9 4.5 76 7-92 222-306 (384)
444 PTZ00075 Adenosylhomocysteinas 32.2 1.1E+02 0.0023 27.0 5.1 66 12-93 275-341 (476)
445 PRK08339 short chain dehydroge 32.1 2E+02 0.0044 22.1 6.5 59 10-72 28-95 (263)
446 PRK07890 short chain dehydroge 32.0 2.1E+02 0.0045 21.6 6.4 58 10-72 25-92 (258)
447 PRK06482 short chain dehydroge 31.7 2.1E+02 0.0047 21.9 6.5 56 9-72 21-86 (276)
448 KOG1197|consensus 31.7 1.2E+02 0.0027 24.8 5.1 76 7-92 166-244 (336)
449 PRK09489 rsmC 16S ribosomal RN 31.7 82 0.0018 26.1 4.3 35 61-95 75-114 (342)
450 cd08297 CAD3 Cinnamyl alcohol 31.6 2.6E+02 0.0057 22.1 8.5 77 7-93 185-265 (341)
451 PLN02662 cinnamyl-alcohol dehy 31.5 1.8E+02 0.0039 22.8 6.2 67 2-72 14-86 (322)
452 PRK07774 short chain dehydroge 31.1 2.3E+02 0.0049 21.2 7.3 58 10-72 26-93 (250)
453 PRK08213 gluconate 5-dehydroge 31.1 2.4E+02 0.0051 21.4 6.8 58 10-72 32-99 (259)
454 cd08248 RTN4I1 Human Reticulon 31.0 1.4E+02 0.0031 23.7 5.6 32 61-93 226-257 (350)
455 PF01558 POR: Pyruvate ferredo 30.9 72 0.0016 23.2 3.5 47 46-94 40-87 (173)
456 TIGR01746 Thioester-redct thio 30.9 2.7E+02 0.0058 22.0 7.9 67 2-72 9-98 (367)
457 PF01262 AlaDh_PNT_C: Alanine 30.8 12 0.00026 27.4 -0.7 75 8-93 39-138 (168)
458 PF09957 DUF2191: Uncharacteri 30.6 51 0.0011 19.2 2.1 17 18-34 3-19 (47)
459 PRK07201 short chain dehydroge 30.4 2.1E+02 0.0045 25.3 6.9 66 2-72 10-87 (657)
460 PRK06172 short chain dehydroge 29.9 2.3E+02 0.0049 21.4 6.3 59 9-72 26-94 (253)
461 PRK08267 short chain dehydroge 29.6 2.2E+02 0.0048 21.6 6.2 57 10-73 21-88 (260)
462 cd05195 enoyl_red enoyl reduct 29.5 87 0.0019 23.6 3.9 32 61-93 178-209 (293)
463 PRK06853 indolepyruvate oxidor 29.1 1.6E+02 0.0034 22.1 5.2 32 61-94 67-98 (197)
464 cd08256 Zn_ADH2 Alcohol dehydr 29.1 91 0.002 25.1 4.1 75 7-92 193-273 (350)
465 COG3437 Response regulator con 29.0 1.1E+02 0.0024 25.8 4.5 70 15-88 15-88 (360)
466 smart00448 REC cheY-homologous 29.0 55 0.0012 16.3 2.0 49 16-71 2-53 (55)
467 PRK03659 glutathione-regulated 29.0 3.6E+02 0.0077 24.2 8.1 78 7-95 415-500 (601)
468 PRK05650 short chain dehydroge 28.9 1.9E+02 0.0042 22.1 5.8 59 9-72 19-87 (270)
469 cd05288 PGDH Prostaglandin deh 28.9 1.5E+02 0.0033 23.3 5.3 76 7-92 165-243 (329)
470 PRK08265 short chain dehydroge 28.9 2.7E+02 0.0058 21.3 8.3 55 10-72 26-90 (261)
471 cd08287 FDH_like_ADH3 formalde 28.9 1.4E+02 0.0029 23.9 5.1 75 7-92 187-267 (345)
472 PRK10840 transcriptional regul 28.6 1.9E+02 0.0041 21.4 5.6 56 15-74 4-61 (216)
473 PRK15057 UDP-glucose 6-dehydro 28.4 78 0.0017 26.7 3.7 32 2-33 9-41 (388)
474 PRK09135 pteridine reductase; 28.3 2.5E+02 0.0054 20.8 6.4 59 10-72 26-95 (249)
475 COG3129 Predicted SAM-dependen 28.2 1.8E+02 0.0039 23.5 5.4 61 15-77 103-168 (292)
476 TIGR00936 ahcY adenosylhomocys 28.2 1.8E+02 0.0039 24.9 5.8 63 14-92 218-281 (406)
477 KOG4589|consensus 28.2 1E+02 0.0022 24.1 3.9 73 7-95 87-186 (232)
478 COG2813 RsmC 16S RNA G1207 met 28.1 1.2E+02 0.0026 25.0 4.5 33 62-94 37-74 (300)
479 PRK09291 short chain dehydroge 27.8 2E+02 0.0043 21.7 5.7 59 9-72 21-83 (257)
480 PRK09390 fixJ response regulat 27.3 1.1E+02 0.0025 21.4 4.0 56 14-75 3-60 (202)
481 PRK11064 wecC UDP-N-acetyl-D-m 27.3 2E+02 0.0043 24.5 5.9 29 2-30 12-42 (415)
482 PRK08251 short chain dehydroge 26.9 2.7E+02 0.0059 20.8 7.4 60 10-72 22-91 (248)
483 cd08244 MDR_enoyl_red Possible 26.8 83 0.0018 24.6 3.4 75 7-94 162-242 (324)
484 PRK07062 short chain dehydroge 26.6 2.9E+02 0.0063 21.0 7.0 60 10-72 28-97 (265)
485 PF10237 N6-adenineMlase: Prob 26.3 92 0.002 23.1 3.3 36 61-96 85-126 (162)
486 cd05289 MDR_like_2 alcohol deh 26.2 2.9E+02 0.0064 20.9 7.3 32 61-93 207-238 (309)
487 COG0054 RibH Riboflavin syntha 26.0 88 0.0019 23.2 3.1 48 21-72 25-81 (152)
488 PF08532 Glyco_hydro_42M: Beta 26.0 2.9E+02 0.0063 20.8 6.3 51 33-93 38-91 (207)
489 COG2961 ComJ Protein involved 25.7 2.3E+02 0.0051 23.0 5.6 80 6-91 102-193 (279)
490 PRK05855 short chain dehydroge 25.6 2.9E+02 0.0063 23.6 6.8 58 10-72 335-402 (582)
491 PRK09242 tropinone reductase; 25.5 3E+02 0.0065 20.8 7.0 60 10-72 29-98 (257)
492 cd08270 MDR4 Medium chain dehy 25.5 3.2E+02 0.0069 21.1 8.9 70 8-93 153-222 (305)
493 PRK06197 short chain dehydroge 25.4 3.4E+02 0.0073 21.3 7.7 60 10-72 36-105 (306)
494 PRK06181 short chain dehydroge 25.3 3E+02 0.0066 20.8 7.3 58 10-72 21-88 (263)
495 COG0270 Dcm Site-specific DNA 25.3 2E+02 0.0044 23.5 5.5 62 4-75 16-80 (328)
496 PRK15181 Vi polysaccharide bio 25.2 2.1E+02 0.0045 23.2 5.6 70 1-73 24-101 (348)
497 PRK07231 fabG 3-ketoacyl-(acyl 25.1 2.4E+02 0.0053 21.0 5.7 57 10-72 25-91 (251)
498 cd08240 6_hydroxyhexanoate_dh_ 25.1 1.4E+02 0.0031 23.9 4.6 31 62-92 243-273 (350)
499 PRK07814 short chain dehydroge 24.9 3.2E+02 0.0069 20.9 6.5 58 10-72 30-97 (263)
500 KOG4609|consensus 24.6 1.7E+02 0.0036 23.4 4.5 61 61-128 217-279 (284)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-27 Score=180.65 Aligned_cols=124 Identities=33% Similarity=0.411 Sum_probs=113.9
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+||.| +||++++ +|+++|+++++++.|++|++. +|+.| |.+++||+..+|++.+|||+|+++++.+++|+.|
T Consensus 83 sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~-lg~~n---V~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L 155 (209)
T COG2518 83 SGYQAAVLARLVG---RVVSIERIEELAEQARRNLET-LGYEN---VTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL 155 (209)
T ss_pred chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHH-cCCCc---eEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH
Confidence 47777 5688874 999999999999999999999 69999 9999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISL 133 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~ 133 (156)
.+|||+|||||+|++..+ .|.+..++|.+++.+..+.+++++|+||.+...|
T Consensus 156 l~QL~~gGrlv~PvG~~~--~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~~~ 207 (209)
T COG2518 156 LDQLKPGGRLVIPVGSGP--AQRLLRITKDGDGNFERRDLFNVRFVPLVGGDGF 207 (209)
T ss_pred HHhcccCCEEEEEEccCC--cEEEEEEEEcCCCcEEEeeeccceeeecCCcccc
Confidence 999999999999999544 5999999998788899999999999999986554
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.94 E-value=3.9e-26 Score=176.65 Aligned_cols=125 Identities=32% Similarity=0.410 Sum_probs=107.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.||+|. +|+++++.++|+++|+++++++.|++|++. ++..| |++++||+..++++.+|||+|+++++++++|..|
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~n---v~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l 158 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDN---VEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEAL 158 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHS---EEEEES-GGGTTGGG-SEEEEEESSBBSS--HHH
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCc---eeEEEcchhhccccCCCcCEEEEeeccchHHHHH
Confidence 488885 688899999999999999999999999999 58889 9999999999999889999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
.+||++|||||+|++. +. .|.+..++|.+++.++.+.++.|+|+||.+..
T Consensus 159 ~~qL~~gGrLV~pi~~-~~-~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 159 LEQLKPGGRLVAPIGQ-GG-SQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp HHTEEEEEEEEEEESS-SS-SEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHhcCCCcEEEEEEcc-CC-ceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 9999999999999997 43 69999999997789999999999999998753
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.88 E-value=4.1e-21 Score=148.65 Aligned_cols=125 Identities=29% Similarity=0.400 Sum_probs=111.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+|+++. +++++++.++|+++|+++++++.|++|++. .+.+| ++++.+|+.++++..++||+|+++++.+++|+.+
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-~g~~~---v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l 162 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-LGYDN---VEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPL 162 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC---eEEEECCcccCCCcCCCcCEEEECCCcccchHHH
Confidence 478885 577778889999999999999999999998 58888 9999999988777778999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISL 133 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~ 133 (156)
.++|||||+|+++.++. .+.+..++|. ++.++.+.++.++|+||.+..++
T Consensus 163 ~~~LkpgG~lvi~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~ 212 (212)
T PRK13942 163 IEQLKDGGIMVIPVGSY---SQELIRVEKD-NGKIIKKKLGEVAFVPLIGKNGF 212 (212)
T ss_pred HHhhCCCcEEEEEEcCC---CcEEEEEEEE-CCEEEEEEeccEEEEecccCCCC
Confidence 99999999999999864 4788889997 46799999999999999987653
No 4
>KOG1661|consensus
Probab=99.87 E-value=3.1e-21 Score=147.52 Aligned_cols=133 Identities=33% Similarity=0.444 Sum_probs=115.1
Q ss_pred CchHHH-HHHhcCCCCEE-EEEeCCHHHHHHHHHHHhhhcC---------CCCccceEEEEccCCCCCCCCCCcCEEEEc
Q psy14971 1 MGDLNV-IVGIKGERALV-LILNHYMKVKSKNQNNKKLNIK---------QNRKSFKNVSVKDGSKGHAEEGPYDIIHLG 69 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V-~avD~~~~~~~~A~~~l~~~~g---------~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~ 69 (156)
+|||+. ++.++++.|.+ ++||..+++++.+++|++.+.. ..+ +.++.||+..++++..+||+|+++
T Consensus 93 SGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~---l~ivvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 93 SGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE---LSIVVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred ccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc---eEEEeCCccccCCccCCcceEEEc
Confidence 589985 56688887765 9999999999999999987421 124 899999999999999999999999
Q ss_pred cCCCchHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 70 AACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 70 ~~~~~i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
++.+++|+.++++|++||+|++|.+.... .|.+.++.|..++.+..+.+|.+.++|+.+..+ |.++|
T Consensus 170 Aaa~~~pq~l~dqL~~gGrllip~~~~~~-~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~---q~~~~ 236 (237)
T KOG1661|consen 170 AAASELPQELLDQLKPGGRLLIPVGQDGG-TQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRES---QPSRF 236 (237)
T ss_pred cCccccHHHHHHhhccCCeEEEeecccCc-eeEEEeecccccCceeeeEeeceEEEecccccc---ccCCC
Confidence 99999999999999999999999997555 688889999888999999999999999997655 44444
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.85 E-value=1e-19 Score=140.05 Aligned_cols=122 Identities=22% Similarity=0.214 Sum_probs=105.7
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++ ++++++++.++|+++|+++++++.|++|+++ .++.++ ++++.+|+.++++..++||+|+++++..++|+.+
T Consensus 83 sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~~~~--v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l 159 (205)
T PRK13944 83 SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGV--VEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSAL 159 (205)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCc--EEEEECCcccCCccCCCccEEEEccCcchhhHHH
Confidence 37777 4677887778999999999999999999998 476533 9999999988776667999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLG 128 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~ 128 (156)
.++|+|||+|++++.... .|.+..++|. ++.++.+.++.|+|+||.
T Consensus 160 ~~~L~~gG~lvi~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 160 VRQLKDGGVLVIPVEEGV--GQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred HHhcCcCcEEEEEEcCCC--ceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 999999999999997654 4788889996 457999999999999984
No 6
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.84 E-value=2.6e-19 Score=138.58 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=109.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++. ++++.++.++|+++|+++++++.|++|+++ .+++| ++++.+|+.+.++...+||+|+++++.+.+++.+
T Consensus 88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~g~~~---v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~ 163 (215)
T TIGR00080 88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-LGLDN---VIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEAL 163 (215)
T ss_pred ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCC---eEEEECCcccCCcccCCCCEEEEcCCcccccHHH
Confidence 377775 577777778999999999999999999999 58888 9999999988766667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLIS 132 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~ 132 (156)
.++|+|||+|+++++. . .+.+..++|. ++.+..+.++.+.|+||.+...
T Consensus 164 ~~~L~~gG~lv~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~ 212 (215)
T TIGR00080 164 IDQLKEGGILVMPVGE-Y--LQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEG 212 (215)
T ss_pred HHhcCcCcEEEEEEcC-C--ceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCcc
Confidence 9999999999999986 3 5888888886 5679999999999999987654
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.77 E-value=3.3e-17 Score=126.29 Aligned_cols=121 Identities=26% Similarity=0.272 Sum_probs=103.8
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++.+ +.+. ++|+++|+++++++.|++++++ .++.| ++++.+|+.+.++..++||+|++++++..+++.+
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l 161 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ-LGLHN---VSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRAL 161 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH-CCCCc---eEEEECCcccCCCcCCCcCEEEEccCchhhhHHH
Confidence 3777764 4443 5899999999999999999998 58888 9999999987776667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
.++|+|||+|+++.+. ++ .+.+..++|. ++.+..+.+++++|+|+.++.
T Consensus 162 ~~~L~~gG~lv~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 162 LEQLKEGGILVAPVGG-EE-QQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE 210 (212)
T ss_pred HHhcCCCcEEEEEEcC-CC-ceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence 9999999999999983 33 4778888885 567999999999999998754
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=2e-17 Score=125.01 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=109.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
+|.+++-+.+++|.++|+|+|.+++.++..++|+++ +|++| ++++.||+.+.+++...||+||++++.. .+.+.
T Consensus 45 tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~-fg~~n---~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~ 120 (187)
T COG2242 45 TGSITIEWALAGPSGRVIAIERDEEALELIERNAAR-FGVDN---LEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEA 120 (187)
T ss_pred ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH-hCCCc---EEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHH
Confidence 478888777999999999999999999999999999 69999 9999999998777656799999999832 45678
Q ss_pred HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
+++.||||||||+...+.++ ...+....+..++. +...+.-.+..++.++..|...++.+
T Consensus 121 ~~~~l~~ggrlV~naitlE~-~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~~~~~~nPv~ 180 (187)
T COG2242 121 AWERLKPGGRLVANAITLET-LAKALEALEQLGGR-EIVQVQISRGKPLGGGTMFRPVNPVF 180 (187)
T ss_pred HHHHcCcCCeEEEEeecHHH-HHHHHHHHHHcCCc-eEEEEEeecceeccCeeEeecCCCEE
Confidence 89999999999999887654 33333222332443 77777888888999999988888763
No 9
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=1.9e-14 Score=117.92 Aligned_cols=126 Identities=22% Similarity=0.269 Sum_probs=103.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|++++ +++..+..+.|+++|+++++++.|+++++. .|.+| ++++.+|+.+..++.++||+|+++.+.+++|+.+
T Consensus 91 tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~g~~n---V~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~ 166 (322)
T PRK13943 91 TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-LGIEN---VIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETW 166 (322)
T ss_pred ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEeCChhhcccccCCccEEEECCchHHhHHHH
Confidence 377775 566666667999999999999999999998 58888 9999999887766667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccC-CCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLH-NGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLIS 132 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~ 132 (156)
.++|+|||+++++.... .. .+.....+|. ++.++...+++++|++..|..+
T Consensus 167 ~~~LkpgG~Lvv~~~~~l~~-~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg 218 (322)
T PRK13943 167 FTQLKEGGRVIVPINLKLSR-RQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLG 218 (322)
T ss_pred HHhcCCCCEEEEEeCCccCC-CCceEEEEec-CCCceEEEEEEeeEEcccchHH
Confidence 99999999999988643 12 3556667776 4568999999999998866433
No 10
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.7e-14 Score=111.08 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=97.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
+|.||+ ||..+++.|+|+++|++++.++.|++|++. +++.|+ |++..+|..+...+. .||+||++.+-+ ++-+.
T Consensus 105 SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~--v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~ 180 (256)
T COG2519 105 SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDR--VTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEH 180 (256)
T ss_pred chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccc--eEEEecccccccccc-ccCEEEEcCCChHHHHHH
Confidence 477775 788899999999999999999999999999 488766 999999998876554 899999998765 56678
Q ss_pred HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCC-CcEEEEEeeceEeeecCCCCCccccchhhhhhccc
Q psy14971 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN-GTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQG 146 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~-~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~~~ 146 (156)
+.+.|+|||++++...+.+ |....+++..+ | +.+.+.++.+.++|+++-++
T Consensus 181 ~~~~Lkpgg~~~~y~P~ve---Qv~kt~~~l~~~g--------------~~~ie~~E~l~R~~~v~~~~ 232 (256)
T COG2519 181 VSDALKPGGVVVVYSPTVE---QVEKTVEALRERG--------------FVDIEAVETLVRRWEVRKEA 232 (256)
T ss_pred HHHHhCCCcEEEEEcCCHH---HHHHHHHHHHhcC--------------ccchhhheeeeheeeecccc
Confidence 8999999999999988653 33332222211 2 34555777777888776554
No 11
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=4.2e-13 Score=104.39 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=77.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccCCCCCCC--CCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDGSKGHAE--EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~~~~~~~--~~~fD~I~i~~~~~~i~~ 77 (156)
||-|+ ||..+...++++++|+++++++.|++|+++ .|+.++ |+++. ||+.+.+.. .++||.||+++....+|+
T Consensus 71 GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~--i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 71 GYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDR--IELLLGGDALDVLSRLLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcce--EEEEecCcHHHHHHhccCCCccEEEEeCChhhCHH
Confidence 77775 677777689999999999999999999999 498775 88888 588765543 589999999999998885
Q ss_pred ---HHHhhCCCCcEEEEEecc
Q psy14971 78 ---EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~~~~ 95 (156)
.+.++|+|||.+|+...-
T Consensus 148 ~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 148 YLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHHHHHhCCCcEEEEeecc
Confidence 568899999999997653
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=7.4e-13 Score=104.25 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=77.9
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
+|++|+ +++.+| .++|+++|+++.|++.|++++.. .+..+ +++++||+.+..-++.+||++.+..+.++++
T Consensus 62 TGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~-~~~~~---i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 62 TGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK-KGVQN---VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred ccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc-cCccc---eEEEEechhhCCCCCCccCEEEeeehhhcCCCHH
Confidence 488887 467777 79999999999999999999998 58888 9999999988655678999999999998766
Q ss_pred ---HHHHhhCCCCcEEEEEecc
Q psy14971 77 ---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~~ 95 (156)
.++.+.|||||++++..-.
T Consensus 137 ~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 137 KALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred HHHHHHHHhhcCCeEEEEEEcC
Confidence 3678999999999987643
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.41 E-value=7e-13 Score=104.23 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=67.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
+|+++. +++.+++.++|+++|++++|++.|+++++. .+..| |+++++|+.+....+.+||+|++..+.++++
T Consensus 58 tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-~~~~~---i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~ 133 (233)
T PF01209_consen 58 TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-EGLQN---IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE 133 (233)
T ss_dssp TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-TT--S---EEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHH
T ss_pred hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-hCCCC---eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH
Confidence 488886 567788899999999999999999999998 47778 9999999987544568899999999998776
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
.++.+.|||||++++..-
T Consensus 134 ~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEeec
Confidence 367899999999998653
No 14
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.38 E-value=1.2e-12 Score=100.13 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch--
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i-- 75 (156)
.|.+++. +..+++.++|+++|+++++++.|++|++. +++ ++ ++++.+|..+.++. .+.||+||++.....+
T Consensus 51 tG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~~~~---v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~ 126 (198)
T PRK00377 51 TGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGVLNN---IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKE 126 (198)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCC---eEEEEechhhhHhhcCCCCCEEEECCCcccHHH
Confidence 3777765 45667778999999999999999999998 484 67 99999998764433 3579999997765444
Q ss_pred -HHHHHhhCCCCcEEEEEeccCCCcceEEE-EEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhh
Q psy14971 76 -PKEILAQLKPGGRLVFHKGLHNGHYQSLA-YIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKV 142 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~ 142 (156)
.+.+.+.|+|||++++...+.+. ...+. .+++. +-......++..+-.++.+...|..+++.+-+
T Consensus 127 ~l~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~~ 193 (198)
T PRK00377 127 IISASWEIIKKGGRIVIDAILLET-VNNALSALENI-GFNLEITEVIIAKGMKTKVGTAMMTRNPIFII 193 (198)
T ss_pred HHHHHHHHcCCCcEEEEEeecHHH-HHHHHHHHHHc-CCCeEEEEEehhhcccccCCcEeecCCCEEEE
Confidence 34667899999999986554322 22332 22232 22456666666667778888888877776544
No 15
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.34 E-value=6.8e-12 Score=94.89 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=98.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
+|.+++.+....+.++|+++|+++++++.|++|+++ .++.+ ++++.+|+.... ...||+|++++....++ +
T Consensus 42 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~---i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~ 115 (187)
T PRK08287 42 TGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGN---IDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIID 115 (187)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCC---eEEEecCchhhc--CcCCCEEEECCCccCHHHHHH
Confidence 477887655556778999999999999999999988 47777 999999975433 25799999987655443 4
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceE-EEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhhhc
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQS-LAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQL 144 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~ 144 (156)
.+.+.|+|||++++.....+. ... ...+.+.+-..+.........+.++.++..|...++.|-+..
T Consensus 116 ~~~~~Lk~gG~lv~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK08287 116 WSLAHLHPGGRLVLTFILLEN-LHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIISC 182 (187)
T ss_pred HHHHhcCCCeEEEEEEecHhh-HHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEEE
Confidence 567899999999987532222 222 223333322235555666677888999999988888875543
No 16
>PLN02476 O-methyltransferase
Probab=99.33 E-value=4.5e-12 Score=101.92 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.|+ +|..+++.|+|+++|.+++.++.|++|+++ .|+.++ |+++.||+.+.++. .++||+||+++...
T Consensus 129 tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~-aGl~~~--I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 129 TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL-AGVSHK--VNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR 205 (278)
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH
Confidence 488887 566677789999999999999999999999 488644 99999999764432 35899999999998
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
.+++ .+.+.|+|||.+++...
T Consensus 206 ~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 206 MYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecC
Confidence 7764 56889999999999754
No 17
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=7.5e-12 Score=98.38 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.++ ++..+++.++|+++|+++++++.|++|++++ |+.++ ++++.||+.+.++. .++||+||+++..+
T Consensus 79 ~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~--i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 79 TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GVDHK--INFIQSDALSALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH
Confidence 367654 5666777899999999999999999999994 87654 99999999764331 36899999999877
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
.++ +.+.+.|+|||.+++...
T Consensus 156 ~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 156 NYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcC
Confidence 655 456889999999998643
No 18
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.31 E-value=1.6e-12 Score=100.38 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=74.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.||-|+ ||..++++++|+++|++++.++.|+++++++ |+.++ |+++.||+.+.++. .++||.||+++...
T Consensus 56 ~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g~~~~--I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~ 132 (205)
T PF01596_consen 56 TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-GLDDR--IEVIEGDALEVLPELANDGEEGQFDFVFIDADKR 132 (205)
T ss_dssp TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-TGGGG--EEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGG
T ss_pred cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-CCCCc--EEEEEeccHhhHHHHHhccCCCceeEEEEccccc
Confidence 477785 6777888899999999999999999999994 87554 99999999753321 25899999999999
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
++++ .+.+.|+|||.+++...
T Consensus 133 ~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 133 NYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp GHHHHHHHHHHHEEEEEEEEEETT
T ss_pred chhhHHHHHhhhccCCeEEEEccc
Confidence 8774 45789999999999754
No 19
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=2.4e-11 Score=92.07 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=73.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
.|.+++.+...++.++|+++|+++++++.+++++++ .+++| ++++.+|+.+. ...++||.|++++ ...++ +
T Consensus 53 tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-~~~~~---i~~i~~d~~~~-~~~~~fD~I~s~~-~~~~~~~~~ 126 (181)
T TIGR00138 53 AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-LGLNN---VEIVNGRAEDF-QHEEQFDVITSRA-LASLNVLLE 126 (181)
T ss_pred CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-hCCCC---eEEEecchhhc-cccCCccEEEehh-hhCHHHHHH
Confidence 477887766677778999999999999999999998 48888 99999998763 4457899999987 54444 4
Q ss_pred HHHhhCCCCcEEEEEeccC
Q psy14971 78 EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.|+|||++++..+..
T Consensus 127 ~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 127 LTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred HHHHhcCCCCEEEEEcCCC
Confidence 5678999999999987643
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=2.1e-11 Score=84.11 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=66.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV--- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i--- 75 (156)
.|.+++.+....+..+|+++|+++++++.|++++... +. ++ ++++++|+........+||+|++.. ....+
T Consensus 12 ~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~---i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~ 87 (112)
T PF12847_consen 12 TGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-GLSDR---ITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPL 87 (112)
T ss_dssp TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTT---EEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHH
T ss_pred CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCC---eEEEECccccCcccCCCCCEEEECCCccccccch
Confidence 3666665544446799999999999999999999552 44 45 9999999821233356799999999 44322
Q ss_pred ------HHHHHhhCCCCcEEEEEe
Q psy14971 76 ------PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~ 93 (156)
-+.+.+.|+|||+|++..
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 245788999999999864
No 21
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=9.1e-12 Score=98.72 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=75.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~ 72 (156)
.||-|+ ||..++++|+|+++|++++.++.|++++++ .|+.++ |+++.||+.+.++. .++||+||+++..
T Consensus 90 ~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-ag~~~~--I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 90 TGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-AGVAHK--IDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCc--eEEEeccHHHHHHHHHhccccCCcccEEEecCCH
Confidence 367775 677778889999999999999999999999 487554 99999999764432 2689999999999
Q ss_pred CchHH---HHHhhCCCCcEEEEEec
Q psy14971 73 IEVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
..+++ .+.++|+|||.+++...
T Consensus 167 ~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 167 DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 88775 45789999999998754
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.28 E-value=5.3e-11 Score=90.74 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=73.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC--CchHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC--IEVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~--~~i~~~ 78 (156)
.|++++......+.++|+++|+++++++.|+++++. .++++ ++++.+|+.+... .++||+|++++.. ..+...
T Consensus 56 tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-~~l~~---i~~~~~d~~~~~~-~~~fDlV~~~~~~~~~~~l~~ 130 (187)
T PRK00107 56 AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-LGLKN---VTVVHGRAEEFGQ-EEKFDVVTSRAVASLSDLVEL 130 (187)
T ss_pred CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-cCCCC---EEEEeccHhhCCC-CCCccEEEEccccCHHHHHHH
Confidence 477777655556679999999999999999999999 48888 9999999877444 5689999997642 234457
Q ss_pred HHhhCCCCcEEEEEeccC
Q psy14971 79 ILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~ 96 (156)
+.+.|+|||++++..+..
T Consensus 131 ~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 131 CLPLLKPGGRFLALKGRD 148 (187)
T ss_pred HHHhcCCCeEEEEEeCCC
Confidence 789999999999987653
No 23
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=1.4e-10 Score=91.87 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=75.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCC-CCCCC--CCCcCEEEEccCCCc-
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGS-KGHAE--EGPYDIIHLGAACIE- 74 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~-~~~~~--~~~fD~I~i~~~~~~- 74 (156)
.|.||+ +++.++|.|+|+++|++++.++.|++|++.+ |+. | |++.++|.. ++... ...+|+||+|.+.+.
T Consensus 51 SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl~~~---v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~ 126 (247)
T PF08704_consen 51 SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GLDDN---VTVHHRDVCEEGFDEELESDFDAVFLDLPDPWE 126 (247)
T ss_dssp TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TCCTT---EEEEES-GGCG--STT-TTSEEEEEEESSSGGG
T ss_pred cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CCCCC---ceeEecceecccccccccCcccEEEEeCCCHHH
Confidence 478885 6889999999999999999999999999994 885 6 999999984 45532 367999999998874
Q ss_pred hHHHHHhhC-CCCcEEEEEeccC
Q psy14971 75 VPKEILAQL-KPGGRLVFHKGLH 96 (156)
Q Consensus 75 i~~~l~~~L-~pGGrLv~~~~~~ 96 (156)
.-+.+.+.| ++||++++....-
T Consensus 127 ~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 127 AIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp GHHHHHHHE-EEEEEEEEEESSH
T ss_pred HHHHHHHHHhcCCceEEEECCCH
Confidence 556788899 8999999987643
No 24
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=1.7e-10 Score=92.10 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=72.3
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|..+ .++.++++.+.|+++|+++.+++.+++|+++ .|+.| ++++.+|+.......+.||+|+++++|+..
T Consensus 83 G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~g~~~---v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~ 158 (264)
T TIGR00446 83 GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-CGVLN---VAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRK 158 (264)
T ss_pred hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-cCCCc---EEEecCCHHHhhhhccCCCEEEEcCCCCCCccccc
Confidence 5555 4677887778999999999999999999999 59888 999999986533334569999999987632
Q ss_pred -----------------------HHHHHhhCCCCcEEEEEeccC
Q psy14971 76 -----------------------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -----------------------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+...+.|||||+||...++.
T Consensus 159 ~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 159 DPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred ChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 124467899999999987643
No 25
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.18 E-value=6.1e-11 Score=90.33 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=88.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC--chHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI--EVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~--~i~~ 77 (156)
+|.+++.+....+.++|+++|+++++++.|++|+++ ++.++ ++++.+|+.+.+.. ...+|.+++++... .+.+
T Consensus 51 ~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-~~~~~---v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~ 126 (196)
T PRK07402 51 TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-FGVKN---VEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQ 126 (196)
T ss_pred CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCC---eEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHH
Confidence 477777554456678999999999999999999998 58878 99999998653332 23479998876532 4446
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceEEE-EEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQSLA-YIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
.+.+.|+|||++++....... ...+. .+++.....+...........++.+...|.++++.+
T Consensus 127 ~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 189 (196)
T PRK07402 127 AVWQYLKPGGRLVATASSLEG-LYAISEGLAQLQARNIEVVQAAVNRLETRGFSQVFAAVDPIF 189 (196)
T ss_pred HHHHhcCCCeEEEEEeecHHH-HHHHHHHHHhcCCCCceEEEEEhhhcccccCcCeeecCCCEE
Confidence 778899999999998764321 11111 122211112444444433344566666666666543
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.16 E-value=2.9e-10 Score=83.09 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=73.5
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--CCcCEEEEccCCCchH--
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--GPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~~fD~I~i~~~~~~i~-- 76 (156)
|.++.. +..+++.++|+++|+++++++.|++++++ .+++| ++++++|..+ ++.. ..||.|++......++
T Consensus 15 G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-~~~~n---i~~~~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 15 GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-LGLDN---IEFIQGDIED-LPQELEEKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-TTSTT---EEEEESBTTC-GCGCSSTTEEEEEEESTGGGTSHH
T ss_pred cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-ccccc---cceEEeehhc-cccccCCCeeEEEEcCchhhccCH
Confidence 666654 44778889999999999999999999998 58888 9999999988 5532 6899999998876543
Q ss_pred ----HHHHhhCCCCcEEEEEecc
Q psy14971 77 ----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.|++||++++....
T Consensus 90 ~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 90 EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECC
Confidence 3578999999999987653
No 27
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.16 E-value=9.2e-10 Score=76.69 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc---hHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE---VPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~---i~~ 77 (156)
|.+++.+....+.++|+++|+++.+++.|+++++. .+..+ ++++.+|+..... ....||.|+++.+... +.+
T Consensus 31 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~ 106 (124)
T TIGR02469 31 GSITIEAARLVPNGRVYAIERNPEALRLIERNARR-FGVSN---IVIVEGDAPEALEDSLPEPDRVFIGGSGGLLQEILE 106 (124)
T ss_pred CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-hCCCc---eEEEeccccccChhhcCCCCEEEECCcchhHHHHHH
Confidence 66665433333448999999999999999999998 47777 9999999764322 2358999999886654 456
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++.+-
T Consensus 107 ~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 107 AIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHcCCCCEEEEEec
Confidence 77899999999998753
No 28
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.15 E-value=5.5e-10 Score=89.02 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=71.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh--cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN--IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~--~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~- 76 (156)
.|.++. +++..++.++|+++|++++|++.|+++.... ....+ ++++++|+.+.....++||+|++..+.++++
T Consensus 84 tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~---i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 84 SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKN---IEWIEGDATDLPFDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCC---eEEEEcccccCCCCCCCEeEEEEecccccCCC
Confidence 367775 4566677789999999999999999876421 12356 9999999876433456899999998887664
Q ss_pred -----HHHHhhCCCCcEEEEEecc
Q psy14971 77 -----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~~ 95 (156)
.++.+.|||||++++..-.
T Consensus 161 ~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 161 RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred HHHHHHHHHHHcCcCcEEEEEECC
Confidence 3678999999999987643
No 29
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=4.5e-10 Score=95.47 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=71.9
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCch-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~i- 75 (156)
|..+ .++.++++.++|+++|+++.+++.+++|+++ +|++| |+++.+|+.... ...+.||+|+++++|+..
T Consensus 264 G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r-~g~~~---v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G 339 (434)
T PRK14901 264 GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR-LGLKS---IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLG 339 (434)
T ss_pred chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-cCCCe---EEEEeCChhhcccccccccccCCEEEEeCCCCccc
Confidence 5555 4677777789999999999999999999999 59988 999999987643 123579999999887521
Q ss_pred ---------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.|||||+||..+++
T Consensus 340 ~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 340 TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 12457899999999987764
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.14 E-value=9e-10 Score=85.46 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=71.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++..++.++|+++|+++++++.|+++++. .+.++ ++++.+|+.+.....++||.|+++...+.++
T Consensus 57 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 132 (231)
T TIGR02752 57 ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-AGLHN---VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQ 132 (231)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-cCCCc---eEEEEechhcCCCCCCCccEEEEecccccCCCHHH
Confidence 56554 566778889999999999999999999987 47777 9999999876433457899999988776543
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 133 ~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 133 VLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred HHHHHHHHcCcCeEEEEEEC
Confidence 356789999999998654
No 31
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.12 E-value=6.4e-10 Score=83.15 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=72.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
.|.+++.+...++..+|+++|+++.+++.|++|++.+ ++++ ++++.+|..+..+ ..+||.|+++.+...-
T Consensus 42 ~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-~~~~---v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~ 116 (170)
T PF05175_consen 42 SGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-GLEN---VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGL 116 (170)
T ss_dssp TSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-TCTT---EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHH
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-Cccc---ccccccccccccc-ccceeEEEEccchhcccccch
Confidence 4889988878888789999999999999999999995 8888 9999999987655 5789999999876421
Q ss_pred ------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-....+.|+|||+|++....
T Consensus 117 ~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 117 DLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHhccCCCEEEEEeec
Confidence 12457899999999887653
No 32
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=7.2e-10 Score=94.24 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=72.1
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCch----
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i---- 75 (156)
|..| .++.++++.++|+++|+++.+++.+++|+++ +|+++ ++++.+|+.... ...++||+|+++++|+..
T Consensus 249 Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~g~~~---v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~ 324 (431)
T PRK14903 249 GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-LKLSS---IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTAR 324 (431)
T ss_pred cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCe---EEEEECchhhhhhhhhccCCEEEECCCCCCCcccc
Confidence 5555 4677888889999999999999999999999 59888 999999987532 124679999999988421
Q ss_pred --H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 --P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +...+.|||||+||..+++
T Consensus 325 ~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 325 NHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 2346889999999998874
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.08 E-value=1.2e-09 Score=87.02 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=70.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|..++ ++...++.++|+++|+++++++.|+++.+. .++++ ++++.+|..+.....+.||.|+++......
T Consensus 89 G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-~g~~~---v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~ 164 (272)
T PRK11873 89 GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-AGYTN---VEFRLGEIEALPVADNSVDVIISNCVINLSPDKER 164 (272)
T ss_pred CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-cCCCC---EEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHH
Confidence 55554 456678888999999999999999999988 58878 999999986533234689999998765433
Q ss_pred -HHHHHhhCCCCcEEEEEe
Q psy14971 76 -PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|||||+|++..
T Consensus 165 ~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred HHHHHHHHcCCCcEEEEEE
Confidence 346789999999999853
No 34
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.4e-09 Score=91.31 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|..+ .++++++..++|+++|+++++++.+++|+++ .|++| |+++.+|+.... ...+||+|+++++|+.
T Consensus 262 G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~~~---v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r 336 (445)
T PRK14904 262 GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA-LGITI---IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGR 336 (445)
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hCCCe---EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhc
Confidence 5555 4677777778999999999999999999999 59888 999999987643 3467999999987632
Q ss_pred ----------------------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 ----------------------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 ----------------------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.....+.|||||+|++.+++.
T Consensus 337 ~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 337 RAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1224567899999999988744
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.04 E-value=1.4e-09 Score=72.01 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=62.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|..+. ++.. +..+|+++|+++++++.++++... .+ ++++.+|..+....+..||.|++......++
T Consensus 8 G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~----~~---~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 8 GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN----EG---VSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT----ST---EEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc----cC---chheeehHHhCccccccccccccccceeeccCHHH
Confidence 44443 3444 568999999999999999998865 24 7899999887644568999999999887663
Q ss_pred --HHHHhhCCCCcEEEE
Q psy14971 77 --KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~ 91 (156)
.++.+.|||||++++
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 367899999999986
No 36
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=3.5e-09 Score=90.19 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----- 74 (156)
|..++ ++..+++.++|+++|+++++++.+++|+++ .|+++ ++++++|+.+.... ...||+|++++++..
T Consensus 262 G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-~g~~~---v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 262 GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR-LGLTN---IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe---EEEEeCCcccccchhcccCCEEEEcCCCCCCeeec
Confidence 66664 567777779999999999999999999999 59888 99999998764321 257999999987642
Q ss_pred -----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.....+.|||||+||...++
T Consensus 338 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 338 RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 112346789999999987654
No 37
>PLN03075 nicotianamine synthase; Provisional
Probab=99.01 E-value=2.2e-09 Score=87.07 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=67.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-------chHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------~i~~~l 79 (156)
+++...|+++++++|+++++++.||+++++..++.++ |+|+.+|+.+.....+.||.||+.+-.. .+-+.+
T Consensus 142 laa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r--V~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l 219 (296)
T PLN03075 142 LAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR--MFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHL 219 (296)
T ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC--cEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHH
Confidence 4556678899999999999999999999531366554 9999999987544457899999994221 233577
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
.+.|+|||.|++-..
T Consensus 220 ~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 220 GKHMAPGALLMLRSA 234 (296)
T ss_pred HHhcCCCcEEEEecc
Confidence 899999999999753
No 38
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.97 E-value=4.6e-09 Score=90.14 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=73.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i----- 75 (156)
|..+.+|.+++..|.|+|.|+++..++..++|+++ +|+.| +.+...|+..... ....||+|++|++|+..
T Consensus 126 gKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-~G~~n---v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk 201 (470)
T PRK11933 126 SKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-CGVSN---VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRK 201 (470)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe---EEEEeCchhhhhhhchhhcCeEEEcCCCCCCccccc
Confidence 45567888998889999999999999999999999 69999 9999999865221 13569999999999731
Q ss_pred -H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 -P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +...+.|||||+||..+++
T Consensus 202 ~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 202 DPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2 1236789999999998775
No 39
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=9.1e-09 Score=87.27 Aligned_cols=91 Identities=26% Similarity=0.317 Sum_probs=67.0
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch---
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i--- 75 (156)
|..+ .++++++ .++|+++|+++++++.+++|+++ .|++.. +++..+|...... ...+||+|+++++|+..
T Consensus 250 G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r-~g~~~~--v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 250 GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKR-LGLTIK--AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred cHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHH-cCCCeE--EEEeccccccccccccccccCEEEEcCCCCCCccc
Confidence 5555 4566666 68999999999999999999999 586422 5557777654222 34679999999876521
Q ss_pred ---H----------------------HHHHhhCCCCcEEEEEeccC
Q psy14971 76 ---P----------------------KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 ---~----------------------~~l~~~L~pGGrLv~~~~~~ 96 (156)
| ....+.|||||+||+.+++-
T Consensus 326 ~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 326 RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 23567899999999987743
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.94 E-value=2.3e-09 Score=74.41 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=67.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCch---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i--- 75 (156)
.|.+.+.+...+ ..+|+++|+++..++.|+.|++. .+...+ ++++.+|..+.. ....+||.|+.+.+....
T Consensus 11 ~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~--~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~ 86 (117)
T PF13659_consen 11 SGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NGLDDR--VEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGD 86 (117)
T ss_dssp TCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CTTTTT--EEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT-
T ss_pred hHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-ccCCce--EEEEECchhhchhhccCceeEEEEECCCCcccccc
Confidence 366666655556 68999999999999999999998 476433 999999986643 235789999999876421
Q ss_pred -----------HHHHHhhCCCCcEEEEEec
Q psy14971 76 -----------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -----------~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||++++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 87 KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ---GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2356899999999999764
No 41
>PLN02244 tocopherol O-methyltransferase
Probab=98.94 E-value=1.3e-08 Score=84.00 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=67.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.. +++|+++|+++.+++.|+++.+.. +..++ ++++.+|+.+.....+.||+|++..+..+++
T Consensus 130 G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~-g~~~~--v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~ 204 (340)
T PLN02244 130 GGSSRYLARKY--GANVKGITLSPVQAARANALAAAQ-GLSDK--VSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK 204 (340)
T ss_pred CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-CCCCc--eEEEEcCcccCCCCCCCccEEEECCchhccCCHHH
Confidence 55554 34444 479999999999999999998873 66422 9999999876433457899999988876654
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 205 ~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 205 FVQELARVAAPGGRIIIVT 223 (340)
T ss_pred HHHHHHHHcCCCcEEEEEE
Confidence 36789999999999865
No 42
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=1.4e-08 Score=86.27 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=66.6
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCc----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~---- 74 (156)
|..++. ++.. +.++|+++|+++++++.+++|+++ .|+ + ++++.+|+.+.. ....+||+|+++++|..
T Consensus 256 G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~-~g~-~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~ 329 (427)
T PRK10901 256 GGKTAHILELA-PQAQVVALDIDAQRLERVRENLQR-LGL-K---ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVI 329 (427)
T ss_pred ChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-cCC-C---eEEEEcCcccchhhcccCCCCEEEECCCCCccccc
Confidence 666654 4444 348999999999999999999999 576 4 789999987532 22467999999998752
Q ss_pred ------------------------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ------------------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ------------------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.+.|||||+|++.++
T Consensus 330 ~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 330 RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12345678999999998775
No 43
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.91 E-value=6.8e-09 Score=79.14 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=69.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~----- 73 (156)
|.+++......|.+.|+++|+++++++.|+++++. .++.| ++++.+|+.+.. ...+.+|.|+++.+.+
T Consensus 28 G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~-~~l~n---i~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~ 103 (194)
T TIGR00091 28 GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK-LGLKN---LHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKR 103 (194)
T ss_pred cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-hCCCC---EEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCC
Confidence 55665333446778999999999999999999988 48888 999999986432 2335799999987543
Q ss_pred ---------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|||||+|++....
T Consensus 104 h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 104 HNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred ccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 1335678999999999987654
No 44
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.91 E-value=1.7e-08 Score=81.45 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++......+..+|+++|+++++++.|++|++.+ ++.++ ++++.+|..+..+ ...||.|+++.+...
T Consensus 132 sG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~~~~--i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~ 207 (284)
T TIGR03533 132 SGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GLEDR--VTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMAD 207 (284)
T ss_pred hhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEECchhhccC-CCCccEEEECCCCCCccchhh
Confidence 3666665545556789999999999999999999984 77433 9999999876554 357999999854210
Q ss_pred -------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|+|||++++-++.
T Consensus 208 l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 208 LPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 112346799999999998764
No 45
>KOG1663|consensus
Probab=98.91 E-value=5.1e-09 Score=81.60 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=75.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~ 73 (156)
.||-++ +|..+.++|+|+++|++++-++.+.+-.+.+ |+... |++++|++.+.+. +.+.||.+|+++-..
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-gv~~K--I~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~ 160 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-GVDHK--ITFIEGPALESLDELLADGESGTFDFAFVDADKD 160 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-cccce--eeeeecchhhhHHHHHhcCCCCceeEEEEccchH
Confidence 367675 4777888999999999999999999888884 87544 9999999976542 247899999999887
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
++- +.+.++||+||.|++...
T Consensus 161 nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 161 NYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred HHHHHHHHHHhhcccccEEEEecc
Confidence 654 678899999999999763
No 46
>KOG1540|consensus
Probab=98.89 E-value=1.7e-08 Score=79.94 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred CchHHH-HHHhcCCC-----CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc
Q psy14971 1 MGDLNV-IVGIKGER-----ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 1 ~G~la~-la~l~g~~-----g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 74 (156)
+||+|+ +...+... ++|+.+|++|+|++.++++..+ .++.....+.+++||+.+...++..||+..+..+.++
T Consensus 111 TGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN 189 (296)
T KOG1540|consen 111 TGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRN 189 (296)
T ss_pred cchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceec
Confidence 488887 46666653 8999999999999999999866 3442211289999999876556788999999998876
Q ss_pred hH------HHHHhhCCCCcEEEEEe
Q psy14971 75 VP------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~------~~l~~~L~pGGrLv~~~ 93 (156)
.+ .+..+.||||||+.+..
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 54 35689999999998754
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.86 E-value=1.4e-08 Score=77.97 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=67.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCCC--CCCCCcCEEEEccCCC-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
|.++.......+..+|+++|+++++++.|+++++.. +..| ++++.+|+ .... ...++||.|++..+.+
T Consensus 52 G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~ 127 (202)
T PRK00121 52 GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-GLTN---LRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKR 127 (202)
T ss_pred CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-CCCC---EEEEecCHHHHHHHHcCccccceEEEECCCCCCCcc
Confidence 666654333346689999999999999999999884 7778 99999998 3211 2246799999976432
Q ss_pred ---------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+-..+.+.|||||++++....
T Consensus 128 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 128 HHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred ccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1235678899999999997643
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.85 E-value=2.9e-08 Score=80.98 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+++......+..+|+++|+++++++.|++|++.+ ++.++ ++++++|..+..+ ..+||.|+++.+..
T Consensus 145 G~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l~~~--i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l 220 (307)
T PRK11805 145 GCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GLEDR--VTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADL 220 (307)
T ss_pred hHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCc--EEEEECchhhhCC-CCCccEEEECCCCCCccchhhc
Confidence 666665544556789999999999999999999984 76433 9999999876554 35799999985321
Q ss_pred -----------------------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----------------------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----------------------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|+|||++++-++.
T Consensus 221 ~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 221 PAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0112346789999999998764
No 49
>PRK04457 spermidine synthase; Provisional
Probab=98.85 E-value=9.9e-09 Score=81.97 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCC-CCCcCEEEEccCCC-ch---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI-EV--- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~-~i--- 75 (156)
|.++.......|..+|+++|+++++++.|++++... +. ++ ++++.+|+.+.... ..+||.|++++-.. .+
T Consensus 78 G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~r---v~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~ 153 (262)
T PRK04457 78 GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-ENGER---FEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDA 153 (262)
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-CCCCc---eEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccc
Confidence 666654433446789999999999999999998642 33 45 99999998654332 35799999986321 22
Q ss_pred ------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||++++...
T Consensus 154 l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 154 LCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred cCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2456789999999999754
No 50
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=2.9e-08 Score=81.49 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+.+.+... +..|+++|++++|++.|++|++. .|+.+ +.++.+|+.+.......||.|+++.+..
T Consensus 194 G~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~-~g~~~---i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~ 267 (329)
T TIGR01177 194 GGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEH-YGIED---FFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGD 267 (329)
T ss_pred CHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHH-hCCCC---CeEEecchhcCCcccCCCCEEEECCCCcCcccccCC
Confidence 5565555554 47999999999999999999999 58888 9999999976433346899999986531
Q ss_pred -------chHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 -------EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 -------~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.+.+.|+|||++++.+.+.
T Consensus 268 ~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 268 GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 11235678999999999987653
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=2.6e-08 Score=78.66 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred chHHH-HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++.+ .++++|+++|++++|++.|+++++. .+..++ ++++.+|+.+. + ...+|.|+++...+.++
T Consensus 68 G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~--v~~~~~d~~~~-~-~~~~D~vv~~~~l~~l~~~~ 142 (247)
T PRK15451 68 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTP--VDVIEGDIRDI-A-IENASMVVLNFTLQFLEPSE 142 (247)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC--eEEEeCChhhC-C-CCCCCEEehhhHHHhCCHHH
Confidence 55553 34433 5778999999999999999999987 465432 99999998753 2 24599999987765442
Q ss_pred -----HHHHhhCCCCcEEEEEe
Q psy14971 77 -----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 143 ~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 143 RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 46789999999999964
No 52
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.6e-08 Score=82.03 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=66.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---chHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i~~ 77 (156)
+|.||+.|..+|. .+|+|+|+||..++.|++|.+.+ +++.. +.....+..+ .+..++||.|+.+--.. .+.+
T Consensus 173 SGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N-~v~~~--~~~~~~~~~~-~~~~~~~DvIVANILA~vl~~La~ 247 (300)
T COG2264 173 SGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN-GVELL--VQAKGFLLLE-VPENGPFDVIVANILAEVLVELAP 247 (300)
T ss_pred hhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc-CCchh--hhcccccchh-hcccCcccEEEehhhHHHHHHHHH
Confidence 5899999999996 88999999999999999999986 65431 2233334333 23447999999987332 3446
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
.+.+.|||||++++.
T Consensus 248 ~~~~~lkpgg~lIlS 262 (300)
T COG2264 248 DIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHcCCCceEEEE
Confidence 778999999999995
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.82 E-value=5.9e-08 Score=72.79 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.++..+...++ +|+++|+++++++.|++|++.+ +. + ++++.+|..+.. .++||.|+++.+....
T Consensus 31 G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~ 101 (179)
T TIGR00537 31 GLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NV-G---LDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR 101 (179)
T ss_pred hHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CC-c---eEEEEccccccc--CCcccEEEECCCCCCCcchhcc
Confidence 566655444443 8999999999999999999873 65 6 899999987643 3589999998764211
Q ss_pred ---------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 102 GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 23456899999999997654
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=2.1e-08 Score=79.35 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++...... +.+|+++|++++|++.|+++++. .|+ ++ ++++++|+.+..+ ..++||.|++....+.++
T Consensus 56 G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~-~g~~~~---v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~ 129 (255)
T PRK11036 56 GQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEA-KGVSDN---MQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPK 129 (255)
T ss_pred hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh-cCCccc---eEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH
Confidence 5555433222 47999999999999999999988 476 45 9999999865321 246899999988765442
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEEE
Confidence 467899999999988653
No 55
>PRK04266 fibrillarin; Provisional
Probab=98.81 E-value=5.4e-08 Score=76.24 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=63.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i-- 75 (156)
|.++. ++..++ .++|+++|++++|++.++++++. . .| +.++.+|+.... .-..+||+|+++.+.+..
T Consensus 84 G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-~--~n---v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~ 156 (226)
T PRK04266 84 GTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-R--KN---IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAE 156 (226)
T ss_pred CHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-c--CC---cEEEECCCCCcchhhhccccCCEEEECCCChhHHH
Confidence 66664 566776 68999999999999988888765 2 57 999999986521 112469999998765432
Q ss_pred --HHHHHhhCCCCcEEEEE
Q psy14971 76 --PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~ 92 (156)
-..+.+.|||||++++.
T Consensus 157 ~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 157 IAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 34667899999999995
No 56
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.81 E-value=1.7e-08 Score=74.76 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=58.3
Q ss_pred EEEeCCHHHHHHHHHHHhhh-cC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCcEE
Q psy14971 18 LILNHYMKVKSKNQNNKKLN-IK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGRL 89 (156)
Q Consensus 18 ~avD~~~~~~~~A~~~l~~~-~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGGrL 89 (156)
+|+|++++|++.|+++.+.. .+ ..+ ++++++|+.+.....++||+|++..+.++++ .++.+.|||||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~---i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKC---IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCc---eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 47999999999998876531 11 246 9999999976433456899999998887654 3678999999999
Q ss_pred EEEecc
Q psy14971 90 VFHKGL 95 (156)
Q Consensus 90 v~~~~~ 95 (156)
++..-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 987543
No 57
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.7e-08 Score=80.82 Aligned_cols=90 Identities=26% Similarity=0.314 Sum_probs=72.1
Q ss_pred chHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNVIVGIKGE-RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~la~l~g~-~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i-- 75 (156)
|..+.+|+++.. ++.|+++|+++..++..++|+++ +|+.| +.++..|+... ++...+||+|+++++|+..
T Consensus 169 GKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-lG~~n---v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ 244 (355)
T COG0144 169 GKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-LGVRN---VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGV 244 (355)
T ss_pred CHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-cCCCc---eEEEecccccccccccccCcCcEEEECCCCCCCcc
Confidence 667888988875 45679999999999999999999 69999 99999987532 2223369999999999732
Q ss_pred ----H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 ----P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ----~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +..++.|||||+||..+++
T Consensus 245 irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 1 1346889999999998873
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.80 E-value=6.7e-08 Score=73.89 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=63.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..... .+.+|+++|+++++++.|+++.+.. ++.+ ++++.+|..+... ..+||.|++......++
T Consensus 42 G~~a~~La~--~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~---v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~ 114 (197)
T PRK11207 42 GRNSLYLAA--NGFDVTAWDKNPMSIANLERIKAAE-NLDN---LHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIP 114 (197)
T ss_pred CHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCc---ceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHH
Confidence 555543222 2469999999999999999999884 7777 9999999865322 35799999988765432
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 115 ~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 115 GLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 35678999999965543
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.79 E-value=5.2e-08 Score=75.22 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.. +..+|+++|+++++++.|+++++. .|+.++ ++++.+|.... +..++||.|++.....+++
T Consensus 11 G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~--i~~~~~d~~~~-~~~~~fD~I~~~~~l~~~~~~~~ 85 (224)
T smart00828 11 GSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-LGLQGR--IRIFYRDSAKD-PFPDTYDLVFGFEVIHHIKDKMD 85 (224)
T ss_pred CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-cCCCcc--eEEEecccccC-CCCCCCCEeehHHHHHhCCCHHH
Confidence 44444 34433 457999999999999999999988 476543 99999998553 2235799999877665443
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 86 ~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 86 LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHcCCCCEEEEEEc
Confidence 467889999999998653
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.79 E-value=3.1e-08 Score=78.28 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|+++|+++|+++.|++.|+++ + ++++.+|+.+. ...++||+|+++...+.+++
T Consensus 41 G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~---~~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~d~~~~ 108 (255)
T PRK14103 41 GNLTRYLARRWPGAVIEALDSSPEMVAAARER--------G---VDARTGDVRDW-KPKPDTDVVVSNAALQWVPEHADL 108 (255)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------C---CcEEEcChhhC-CCCCCceEEEEehhhhhCCCHHHH
Confidence 66665433334678999999999999998642 3 77889998653 34578999999998876653
Q ss_pred --HHHhhCCCCcEEEEEec
Q psy14971 78 --EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|||||++++.+.
T Consensus 109 l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 109 LVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHhCCCCcEEEEEcC
Confidence 56788999999998653
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.76 E-value=1e-07 Score=79.87 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=69.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC---CCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ---NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE--- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~---~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~--- 74 (156)
.|.+++.+....|..+|+++|+++.+++.|++|++.+ +. .+ ++++.+|+....+ ...||.|+++.+.+.
T Consensus 239 tGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~---v~~~~~D~l~~~~-~~~fDlIlsNPPfh~~~~ 313 (378)
T PRK15001 239 NGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDR---CEFMINNALSGVE-PFRFNAVLCNPPFHQQHA 313 (378)
T ss_pred ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CcccCce---EEEEEccccccCC-CCCEEEEEECcCcccCcc
Confidence 3778877666678899999999999999999999874 43 35 8999999876543 357999999877542
Q ss_pred --------hHHHHHhhCCCCcEEEEEe
Q psy14971 75 --------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 --------i~~~l~~~L~pGGrLv~~~ 93 (156)
+.....+.|+|||+|+++.
T Consensus 314 ~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 314 LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1234578999999999985
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.75 E-value=7e-08 Score=76.14 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......+.++|+++|++++|++.|++++ .+ ++++.+|+.+.. ...+||+|+++.+.+.++
T Consensus 43 G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~---~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~ 112 (258)
T PRK01683 43 GNSTELLVERWPAARITGIDSSPAMLAEARSRL------PD---CQFVEADIASWQ-PPQALDLIFANASLQWLPDHLEL 112 (258)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CC---CeEEECchhccC-CCCCccEEEEccChhhCCCHHHH
Confidence 666654333345689999999999999998764 34 788999986533 345899999999887654
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 113 l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 113 FPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHhcCCCcEEEEEC
Confidence 35788999999999865
No 63
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.74 E-value=1.4e-07 Score=73.62 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++.......+...|+++|+++.+++.|+++++. .++.+ ++++.+|..+..+ ..+||.|+++.+...
T Consensus 99 G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~---~~~~~~d~~~~~~-~~~fD~Vi~npPy~~~~~~~~~ 173 (251)
T TIGR03534 99 GAIALALAKERPDARVTAVDISPEALAVARKNAAR-LGLDN---VTFLQSDWFEPLP-GGKFDLIVSNPPYIPEADIHLL 173 (251)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCe---EEEEECchhccCc-CCceeEEEECCCCCchhhhhhc
Confidence 56665444444567999999999999999999988 48877 9999999876443 468999999754321
Q ss_pred -------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+.+.+.|+|||++++..+.
T Consensus 174 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 113456789999999998764
No 64
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.74 E-value=4.7e-08 Score=80.36 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=66.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++..... .++.|++||.++++++.|+++.+.. +. .+ ++++++|+.+.....+.||+|++....++++
T Consensus 143 G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~-~~~~~---i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~ 216 (322)
T PLN02396 143 GLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMD-PVTST---IEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAE 216 (322)
T ss_pred CHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhc-Ccccc---eeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHH
Confidence 666653333 3479999999999999999987652 33 36 9999999865333456899999998877664
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 217 ~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 217 FCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHcCCCcEEEEEEC
Confidence 357899999999998764
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.74 E-value=9.4e-08 Score=77.22 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---HH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---PK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~ 77 (156)
.|.+++.+...|. .+|+++|+++.+++.|++|++.+ ++.++ +.+..++... . ...+||+|+++.....+ ..
T Consensus 170 sG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~~~~~--~~~~~~~~~~-~-~~~~fDlVvan~~~~~l~~ll~ 243 (288)
T TIGR00406 170 SGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-QVSDR--LQVKLIYLEQ-P-IEGKADVIVANILAEVIKELYP 243 (288)
T ss_pred hhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CCCcc--eEEEeccccc-c-cCCCceEEEEecCHHHHHHHHH
Confidence 3778876666664 69999999999999999999885 66543 7777776332 2 24689999998765533 34
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|||||+|++.-
T Consensus 244 ~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 244 QFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHHHcCCCcEEEEEe
Confidence 6789999999999853
No 66
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.73 E-value=1.1e-07 Score=76.50 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=67.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+++......+..+|+++|+++++++.|++|++. .++.++ ++++.+|..+..+. .+||+|+++.+.-
T Consensus 126 G~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~-~~~~~~--v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~ 201 (284)
T TIGR00536 126 GCIALALAYEFPNAEVIAVDISPDALAVAEENAEK-NQLEHR--VEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADL 201 (284)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEECchhccCcC-CCccEEEECCCCCCcchhhcC
Confidence 66776555555668999999999999999999998 477543 99999998775433 3799999974321
Q ss_pred -----c------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----E------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----~------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +.....+.|+|||+|++-++.
T Consensus 202 ~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 202 PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 0 112345789999999998875
No 67
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.72 E-value=2e-08 Score=77.94 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|..+-+...--|.+.|+|+|.|++|++.|++++ .| .+|..+|..+ |....+.|.+|.++..+.+|+
T Consensus 42 GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~---~~f~~aDl~~-w~p~~~~dllfaNAvlqWlpdH~~l 111 (257)
T COG4106 42 GNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PD---ATFEEADLRT-WKPEQPTDLLFANAVLQWLPDHPEL 111 (257)
T ss_pred CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CC---CceecccHhh-cCCCCccchhhhhhhhhhccccHHH
Confidence 445544444457799999999999999997665 35 7899999876 666688999999999987774
Q ss_pred --HHHhhCCCCcEEEEEecc
Q psy14971 78 --EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~~ 95 (156)
.|+.+|+|||.|.+-+..
T Consensus 112 l~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 112 LPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred HHHHHHhhCCCceEEEECCC
Confidence 688999999999998763
No 68
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.71 E-value=9.4e-08 Score=75.63 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---HHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---PKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~~ 78 (156)
|.+++.+...+. .+|+++|+++.+++.|++|++.+ ++... +.+..+|. +||.|+++.....+ .+.
T Consensus 131 G~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~~~~--~~~~~~~~--------~fD~Vvani~~~~~~~l~~~ 198 (250)
T PRK00517 131 GILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GVELN--VYLPQGDL--------KADVIVANILANPLLELAPD 198 (250)
T ss_pred HHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CCCce--EEEccCCC--------CcCEEEEcCcHHHHHHHHHH
Confidence 677776666665 47999999999999999999884 65221 55544432 79999987654433 346
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
+.+.|||||++++.-
T Consensus 199 ~~~~LkpgG~lilsg 213 (250)
T PRK00517 199 LARLLKPGGRLILSG 213 (250)
T ss_pred HHHhcCCCcEEEEEE
Confidence 788999999999963
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=98.70 E-value=1.4e-07 Score=73.30 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=64.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.+++.+...+ .++|+++|+++++++.|++|++.. +. + ++++.+|..+..+ ..+||+|+++.+...
T Consensus 48 G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-~~-~---~~~~~~d~~~~~~-~~~fD~Vi~npPy~~~~~~~~~ 120 (223)
T PRK14967 48 GALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-GV-D---VDVRRGDWARAVE-FRPFDVVVSNPPYVPAPPDAPP 120 (223)
T ss_pred HHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-CC-e---eEEEECchhhhcc-CCCeeEEEECCCCCCCCccccc
Confidence 55665544444 369999999999999999999884 65 5 8999999876433 468999999854211
Q ss_pred --------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 --------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+...+.|||||++++...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 121 SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 112356899999999987654
No 70
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.70 E-value=4.8e-08 Score=82.32 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=67.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCC----CCCCcCEEEEccCCC-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~- 73 (156)
.|.+++.+.. +...+|+++|+++.+++.|++|++.+ |++ + ++++.+|+.+.+. ...+||.|+++.+.-
T Consensus 231 tG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~N-gl~~~~---v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 231 TGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELN-KLDLSK---AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV 305 (396)
T ss_pred CCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCc---EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 3666665443 43469999999999999999999985 764 6 9999999876432 235799999997641
Q ss_pred ----chH----------HHHHhhCCCCcEEEEEecc
Q psy14971 74 ----EVP----------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ----~i~----------~~l~~~L~pGGrLv~~~~~ 95 (156)
.+. ....+.|+|||.|+...+.
T Consensus 306 ~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 306 ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 111 1346899999999986653
No 71
>PRK08317 hypothetical protein; Provisional
Probab=98.69 E-value=2.4e-07 Score=71.13 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=66.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.++. ++...++.++|+++|+++++++.|+++... ...+ ++++.+|........+.||.|++......+
T Consensus 31 G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~ 105 (241)
T PRK08317 31 GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPN---VEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPAR 105 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCc---eEEEecccccCCCCCCCceEEEEechhhccCCHHH
Confidence 55554 566666778999999999999999998443 2356 999999976532234689999998776543
Q ss_pred -HHHHHhhCCCCcEEEEEec
Q psy14971 76 -PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||++++...
T Consensus 106 ~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 106 ALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHHhcCCcEEEEEec
Confidence 3467899999999998653
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.68 E-value=2.4e-07 Score=76.78 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=67.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++.+....+..+|+++|+++.+++.|++|++.+ ++ . .+++.+|+.... .++||.|+++.+.+.
T Consensus 207 ~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l-~---~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~ 279 (342)
T PRK09489 207 AGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GL-E---GEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSL 279 (342)
T ss_pred cCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-C---CEEEEccccccc--CCCccEEEECCCccCCccccH
Confidence 3777776555567789999999999999999999985 65 3 577888876533 468999999987653
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|||||+|+++..
T Consensus 280 ~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 280 DAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred HHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 12345788999999988764
No 73
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.68 E-value=2.2e-07 Score=73.79 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=63.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~----- 74 (156)
|.+++......+..+|+++|+++++++.|++|++.+ + ++++.+|..+..+. .+.||.|+++.+...
T Consensus 98 G~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~----~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~ 170 (251)
T TIGR03704 98 GAVGAALAAALDGIELHAADIDPAAVRCARRNLADA----G---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIA 170 (251)
T ss_pred HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----C---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhh
Confidence 666765433344579999999999999999999873 3 57899998764432 257999999976421
Q ss_pred ---------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ---------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ---------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+...+.|+|||++++..+.
T Consensus 171 ~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 171 LMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred cCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 011235789999999998864
No 74
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.67 E-value=2.8e-07 Score=70.33 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=61.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..+... +.+|+++|+++++++.++++.+.. ++ + +++..+|.... +...+||.|++......++
T Consensus 42 G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-~~-~---v~~~~~d~~~~-~~~~~fD~I~~~~~~~~~~~~~~~ 113 (195)
T TIGR00477 42 GRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-NL-P---LRTDAYDINAA-ALNEDYDFIFSTVVFMFLQAGRVP 113 (195)
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-CC-C---ceeEeccchhc-cccCCCCEEEEecccccCCHHHHH
Confidence 6677654433 379999999999999999998773 65 4 77788886542 2235799999987765432
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 114 ~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 114 EIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred HHHHHHHHHhCCCcEEEEEE
Confidence 35678999999966654
No 75
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.67 E-value=6.3e-09 Score=70.46 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCchH------HHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEVP------KEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i~------~~l~~~L~ 84 (156)
+..+++++|+++.|++.|++++.. .+..+ ......+..+.... ..+||.|++....++++ ..+.+.||
T Consensus 19 ~~~~~~~~D~s~~~l~~a~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 19 PDARYTGVDISPSMLERARERLAE-LGNDN---FERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLK 94 (99)
T ss_dssp -EEEEEEEESSSSTTSTTCCCHHH-CT------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-T
T ss_pred CCCEEEEEECCHHHHHHHHHHhhh-cCCcc---eeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcC
Confidence 679999999999999999999988 35444 44555444332222 25899999999988764 25678999
Q ss_pred CCcEE
Q psy14971 85 PGGRL 89 (156)
Q Consensus 85 pGGrL 89 (156)
|||+|
T Consensus 95 pgG~l 99 (99)
T PF08242_consen 95 PGGIL 99 (99)
T ss_dssp SS-EE
T ss_pred CCCCC
Confidence 99986
No 76
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.66 E-value=4.5e-08 Score=79.55 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=62.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---hHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE---VPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~---i~~ 77 (156)
+|.|++.|.++|. .+|+|+|+||..++.|++|++.+ |+.++ +.+. ...+ .. ..+||.|+.+--..- +.+
T Consensus 172 SGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~~~~--~~v~--~~~~-~~-~~~~dlvvANI~~~vL~~l~~ 243 (295)
T PF06325_consen 172 SGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GVEDR--IEVS--LSED-LV-EGKFDLVVANILADVLLELAP 243 (295)
T ss_dssp TSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T-TTC--EEES--CTSC-TC-CS-EEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CCCee--EEEE--Eecc-cc-cccCCEEEECCCHHHHHHHHH
Confidence 5899999999986 78999999999999999999987 76553 5443 2111 22 278999999765542 335
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
.+.+.|+|||+|++.
T Consensus 244 ~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 244 DIASLLKPGGYLILS 258 (295)
T ss_dssp HCHHHEEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEc
Confidence 677899999999995
No 77
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=75.35 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i---- 75 (156)
|.+++++..-.+..+|++||++++++++|++|++.+ ++..+ |+++++|..+.... ...||.|+++-+.-..
T Consensus 56 G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~r--i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~ 132 (248)
T COG4123 56 GALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEER--IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRL 132 (248)
T ss_pred CHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhc--eeEehhhHHHhhhcccccccCEEEeCCCCCCCcccc
Confidence 677776555434499999999999999999999985 66444 99999998764432 3469999998764211
Q ss_pred ----------------HH----HHHhhCCCCcEEEEEec
Q psy14971 76 ----------------PK----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----------------~~----~l~~~L~pGGrLv~~~~ 94 (156)
.+ .....|||||++.++..
T Consensus 133 ~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 133 NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 01 23578999999999865
No 78
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.65 E-value=3.1e-07 Score=71.85 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=65.6
Q ss_pred chHHH-HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNV-IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~-la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~-- 76 (156)
|.++. ++... .|.++|+++|++++|++.|+++++. .+.. + ++++.+|..+... ..+|+|++..+.+.++
T Consensus 65 G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~ 138 (239)
T TIGR00740 65 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIP---VEILCNDIRHVEI--KNASMVILNFTLQFLPPE 138 (239)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC---eEEEECChhhCCC--CCCCEEeeecchhhCCHH
Confidence 55543 44443 4678999999999999999999987 3543 5 9999999876322 3589999988876653
Q ss_pred ------HHHHhhCCCCcEEEEEe
Q psy14971 77 ------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEee
Confidence 35678999999999864
No 79
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.64 E-value=2.5e-07 Score=77.72 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=70.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~----- 74 (156)
|..++..+...|...++|+|+++++++.|.+++.. .+++| +.++.+|+... ....+.+|.|++..+.+.
T Consensus 134 G~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-~gL~N---V~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrH 209 (390)
T PRK14121 134 GRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-LNLKN---LLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPH 209 (390)
T ss_pred cHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEECCHHHhhhhCCCCceeEEEEeCCCCccccch
Confidence 55555444445789999999999999999999988 48889 99999998643 123578999999987652
Q ss_pred -------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
....+.+.|+|||.+.+....
T Consensus 210 RRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 210 RRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 234668999999999997653
No 80
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.63 E-value=4.6e-08 Score=66.62 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=55.5
Q ss_pred HHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC-CCchH-------
Q psy14971 7 IVGIK--GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEVP------- 76 (156)
Q Consensus 7 la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i~------- 76 (156)
++... ++..+++++|++++|++.|+++... .+. + ++++++|+.+.....++||+|++.+. ...+.
T Consensus 15 l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~-~---~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 15 LARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGP-K---VRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp HHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTT-T---SEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHH
T ss_pred HHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCC-c---eEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHH
Confidence 34444 4458999999999999999999987 365 6 99999999773334679999999544 55443
Q ss_pred -HHHHhhCCCCc
Q psy14971 77 -KEILAQLKPGG 87 (156)
Q Consensus 77 -~~l~~~L~pGG 87 (156)
+.+.+.|+|||
T Consensus 90 l~~~~~~l~pgG 101 (101)
T PF13649_consen 90 LRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHHHhCCCC
Confidence 35678899987
No 81
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.63 E-value=3.1e-07 Score=78.62 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.+++ ++... +.+|+++|+++++++.|++|... .+ .+ ++++.+|........++||.|++.....+++
T Consensus 278 G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~-~~-~~---v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~ 350 (475)
T PLN02336 278 GGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG-RK-CS---VEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPA 350 (475)
T ss_pred CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc-CC-Cc---eEEEEcCcccCCCCCCCEEEEEECCcccccCCHHH
Confidence 55554 44444 46999999999999999998764 23 35 9999999876433346899999988876554
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 351 ~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 351 LFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 467899999999998653
No 82
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.62 E-value=5e-07 Score=69.67 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=66.2
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. +...++..+|+++|+++.+++.|++++... +..+. ++++.+|..+.....++||+|++......++
T Consensus 63 G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~ 139 (239)
T PRK00216 63 GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-GLSGN--VEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDK 139 (239)
T ss_pred CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-ccccC--eEEEecccccCCCCCCCccEEEEecccccCCCHHH
Confidence 555543 444433689999999999999999998762 44322 8999999876443456899999887655432
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 140 ~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 140 ALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred HHHHHHHhccCCcEEEEEEe
Confidence 456789999999988643
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.62 E-value=2.6e-07 Score=73.73 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHhhCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILAQLKP 85 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~~L~p 85 (156)
.++|+++|+++++++.|+++... .++ ++++.+|+.+.....++||+|++..+..+++ ..+.+.|||
T Consensus 75 ~~~v~giD~s~~~~~~a~~~~~~---~~~---i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP 148 (263)
T PTZ00098 75 GAHVHGVDICEKMVNIAKLRNSD---KNK---IEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP 148 (263)
T ss_pred CCEEEEEECCHHHHHHHHHHcCc---CCc---eEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999998754 246 9999999875333347899999965543332 356799999
Q ss_pred CcEEEEEec
Q psy14971 86 GGRLVFHKG 94 (156)
Q Consensus 86 GGrLv~~~~ 94 (156)
||++++...
T Consensus 149 GG~lvi~d~ 157 (263)
T PTZ00098 149 NGILLITDY 157 (263)
T ss_pred CcEEEEEEe
Confidence 999998653
No 84
>PTZ00146 fibrillarin; Provisional
Probab=98.62 E-value=4.4e-07 Score=73.53 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C-CCCCcCEEEEccCCCchH-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A-EEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~-~~~~fD~I~i~~~~~~i~- 76 (156)
|+++ .+|.++++.++|+++|+++++.+...+..+. . .| |.++.+|+.... . ....||+||++.+.++-.
T Consensus 144 G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r--~N---I~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pdq~~ 217 (293)
T PTZ00146 144 GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-R--PN---IVPIIEDARYPQKYRMLVPMVDVIFADVAQPDQAR 217 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-c--CC---CEEEECCccChhhhhcccCCCCEEEEeCCCcchHH
Confidence 5555 5788999999999999999866554444333 1 47 999999986532 1 124799999999755422
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++.+
T Consensus 218 il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred HHHHHHHHhccCCCEEEEEE
Confidence 24567899999999954
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.61 E-value=4.9e-07 Score=71.77 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=64.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------i 75 (156)
|.+++......+..+|+++|+++++++.|++|++. ....+ ++++.+|..+... .++||.|+++.+... +
T Consensus 120 G~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~~~~---i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~ 194 (275)
T PRK09328 120 GAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GLGAR---VEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLL 194 (275)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CCCCc---EEEEEccccCcCC-CCceeEEEECCCcCCcchhhhC
Confidence 55665444444668999999999999999999983 13356 9999999876543 468999999754321 0
Q ss_pred --------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 --------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-..+.+.|+|||++++.++.
T Consensus 195 ~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 195 QPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred CchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 11234899999999998764
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.60 E-value=5.1e-07 Score=72.78 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|..++.+... +.+|+++|+++++++.++++.+.. ++ + +++..+|...... ..+||.|++......++
T Consensus 132 G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l-~---v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~ 203 (287)
T PRK12335 132 GRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NL-N---IRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIP 203 (287)
T ss_pred CHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CC-c---eEEEEechhcccc-cCCccEEEEcchhhhCCHHHHH
Confidence 5555443333 479999999999999999999883 76 6 8999999765322 46899999988765332
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 204 ~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 204 AIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 35678999999977644
No 87
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=6.8e-07 Score=72.48 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=73.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.|++.+....|..+|+-+|++...++.||+|++.+ +.++ ..+...|..+...+ .||.|+++-+.+.
T Consensus 170 Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-~~~~---~~v~~s~~~~~v~~--kfd~IisNPPfh~G~~v~~~ 243 (300)
T COG2813 170 GVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-GVEN---TEVWASNLYEPVEG--KFDLIISNPPFHAGKAVVHS 243 (300)
T ss_pred cHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-CCCc---cEEEEecccccccc--cccEEEeCCCccCCcchhHH
Confidence 789988878888999999999999999999999986 7777 67888888776554 8999999998763
Q ss_pred ----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+-....+.|++||.|.++..
T Consensus 244 ~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 244 LAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHHHHHHhhccCCEEEEEEc
Confidence 22345789999999999875
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.59 E-value=7.3e-07 Score=75.50 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=65.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~~~~fD~I~i~~~~~~------ 74 (156)
|.+++......+..+|+++|+++++++.|++|++. .+. + ++++.+|..+. .+...+||.|+++.+.-.
T Consensus 263 G~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~-~g~-r---V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l 337 (423)
T PRK14966 263 GAVAVTVALERPDAFVRASDISPPALETARKNAAD-LGA-R---VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHL 337 (423)
T ss_pred hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC-c---EEEEEcchhccccccCCCccEEEECCCCCCcchhhh
Confidence 66666544445678999999999999999999988 464 6 99999998653 223457999999875310
Q ss_pred h-------H------------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 V-------P------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i-------~------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
. | +.+.+.|+|||++++-++.
T Consensus 338 ~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 338 LQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred cchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 0 1 1235689999999987764
No 89
>PRK00811 spermidine synthase; Provisional
Probab=98.59 E-value=2.7e-07 Score=74.48 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch----------HH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV----------PK 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i----------~~ 77 (156)
..+|+++|+++++++.|++++.. ++ -++ ++++.+|+.+.... .++||+|+++..-+.- -+
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~-~~~~~~~d~r---v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~ 175 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPE-IAGGAYDDPR---VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYE 175 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHH-hccccccCCc---eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHH
Confidence 46999999999999999999875 22 134 99999998764332 4689999998754421 13
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++..+
T Consensus 176 ~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 176 NCKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHHhcCCCcEEEEeCC
Confidence 56789999999998654
No 90
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.59 E-value=2e-07 Score=83.76 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=68.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCCC-CCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---- 73 (156)
+|.+++.+..-| ..+|+++|+++.+++.|++|++.+ |++ + ++++.+|+.+.+.. ..+||.|+++.+.-
T Consensus 549 tG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n-g~~~~~---v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~ 623 (702)
T PRK11783 549 TGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN-GLSGRQ---HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSK 623 (702)
T ss_pred CCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCCccc---eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCC
Confidence 477887766544 357999999999999999999986 764 5 99999998653321 35799999997631
Q ss_pred ---c----------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---E----------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---~----------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +.....+.|+|||.|++....
T Consensus 624 ~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 624 RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 123457789999999887654
No 91
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.58 E-value=3.2e-07 Score=75.91 Aligned_cols=83 Identities=20% Similarity=0.124 Sum_probs=63.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.++ ..+|+++|.+++|++.|+++... .+ ++++.+|+.+.....+.||+|++.......+
T Consensus 125 G~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~---i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~ 196 (340)
T PLN02490 125 GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KE---CKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 196 (340)
T ss_pred cHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cC---CeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHH
Confidence 55554 344443 47999999999999999998642 36 8899999876333356899999988776543
Q ss_pred --HHHHhhCCCCcEEEEE
Q psy14971 77 --KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~ 92 (156)
+.+.+.|+|||++++.
T Consensus 197 ~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLI 214 (340)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 4678999999999875
No 92
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.58 E-value=3.6e-07 Score=70.34 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCC-CchHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAAC-IEVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~-~~i~~~ 78 (156)
.|.+++.+...+ .++|+++|++++.++.|++|++.+ +++| ++++.+|+.+.++. ..+||.||++.+. ..+.+.
T Consensus 64 sG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~-~~~~---v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~ 138 (199)
T PRK10909 64 SGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATL-KAGN---ARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEE 138 (199)
T ss_pred ccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh-CCCc---EEEEEchHHHHHhhcCCCceEEEECCCCCCChHHH
Confidence 367776443333 379999999999999999999994 8878 99999998764432 3469999999994 343332
Q ss_pred H----Hh--hCCCCcEEEEEec
Q psy14971 79 I----LA--QLKPGGRLVFHKG 94 (156)
Q Consensus 79 l----~~--~L~pGGrLv~~~~ 94 (156)
+ .+ .|+|++.+++-..
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEec
Confidence 2 22 3688888887654
No 93
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.57 E-value=1.7e-07 Score=71.76 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=59.1
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.|+.. |... .+++++|+++..++.||+++.. .++ |+++.+|..+.+|+ +.||.|++.....-+
T Consensus 55 G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~---~~~---V~~~~~dvp~~~P~-~~FDLIV~SEVlYYL~~~~~ 124 (201)
T PF05401_consen 55 GVLTERLAPRC---DRLLAVDISPRALARARERLAG---LPH---VEWIQADVPEFWPE-GRFDLIVLSEVLYYLDDAED 124 (201)
T ss_dssp SHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SS---EEEEES-TTT---S-S-EEEEEEES-GGGSSSHHH
T ss_pred cHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC---CCC---eEEEECcCCCCCCC-CCeeEEEEehHhHcCCCHHH
Confidence 555543 3332 6999999999999999999976 367 99999999886664 789999998765433
Q ss_pred ----HHHHHhhCCCCcEEEEEec
Q psy14971 76 ----PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||.||+-..
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEe
Confidence 2356789999999999743
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.54 E-value=9.5e-07 Score=71.63 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.+++.+....|..+|+++|. +++++.|++|++. .|+.++ ++++.+|..+... +.+|.|++....+..
T Consensus 161 G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~gl~~r--v~~~~~d~~~~~~--~~~D~v~~~~~lh~~~~~~~~ 234 (306)
T TIGR02716 161 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KGVADR--MRGIAVDIYKESY--PEADAVLFCRILYSANEQLST 234 (306)
T ss_pred hHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh-CCccce--EEEEecCccCCCC--CCCCEEEeEhhhhcCChHHHH
Confidence 666664444467789999997 8999999999998 487544 9999999875222 347999987765533
Q ss_pred --HHHHHhhCCCCcEEEEEe
Q psy14971 76 --PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|+|||+|++..
T Consensus 235 ~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 235 IMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 235678999999999974
No 95
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.51 E-value=1.8e-07 Score=73.53 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=66.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.|+.-.+..| +.|+++|+++++++.|+.+.... |+ + +........+.....++||+|++--.+.++|+
T Consensus 71 G~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv-~---i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~ 143 (243)
T COG2227 71 GILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GV-N---IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESF 143 (243)
T ss_pred cHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cc-c---ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHH
Confidence 55665444555 89999999999999999998874 54 3 55666665554444479999999998888873
Q ss_pred --HHHhhCCCCcEEEEEec
Q psy14971 78 --EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.+||||++++...
T Consensus 144 ~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 144 LRACAKLVKPGGILFLSTI 162 (243)
T ss_pred HHHHHHHcCCCcEEEEecc
Confidence 46889999999999744
No 96
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.51 E-value=6e-07 Score=76.59 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=76.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCCchH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIEVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~i~ 76 (156)
.|.+++.+...+ .+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ..+||+|+++.+.....
T Consensus 308 tG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~ 381 (443)
T PRK13168 308 LGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN-GLDN---VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA 381 (443)
T ss_pred CCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH
Confidence 366766433322 79999999999999999999984 8888 99999998654321 35799999998876555
Q ss_pred HH--HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeec
Q psy14971 77 KE--ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPL 127 (156)
Q Consensus 77 ~~--l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL 127 (156)
+. ....++|++.+++...+. .....+.......|..+.+..+..-|-
T Consensus 382 ~~~~~l~~~~~~~ivyvSCnp~----tlaRDl~~L~~~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 382 EVMQALAKLGPKRIVYVSCNPA----TLARDAGVLVEAGYRLKRAGMLDMFPH 430 (443)
T ss_pred HHHHHHHhcCCCeEEEEEeChH----HhhccHHHHhhCCcEEEEEEEeccCCC
Confidence 32 334568888777766432 122211111112266666665555443
No 97
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.50 E-value=5.3e-07 Score=72.10 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh--c-C----------------------C-CCccceEEEEccCCCCCCCCCCcCEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN--I-K----------------------Q-NRKSFKNVSVKDGSKGHAEEGPYDIIH 67 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~--~-g----------------------~-~n~~~v~~~~gD~~~~~~~~~~fD~I~ 67 (156)
..+|+|+|+++++++.|++..-.. + + + ++ |+|..+|..+..+..++||.|+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~---V~F~~~dl~~~~~~~~~fD~I~ 208 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKER---VRFAKHNLLAESPPLGDFDLIF 208 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCc---CEEeeccCCCCCCccCCCCEEE
Confidence 579999999999999999864100 0 0 1 24 8999999987555467899999
Q ss_pred EccCCCch--------HHHHHhhCCCCcEEEEEec
Q psy14971 68 LGAACIEV--------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 68 i~~~~~~i--------~~~l~~~L~pGGrLv~~~~ 94 (156)
+......+ ...+.+.|+|||.|++-..
T Consensus 209 crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 209 CRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred echhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 97765443 2357889999999998554
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.50 E-value=1.4e-06 Score=75.67 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++.....-+.++|+++|+++++++.|++|++.+ ++.++ ++++.+|..+..+ ..+||.|+++.+.-.
T Consensus 149 sG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l~~~--v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~ 224 (506)
T PRK01544 149 SGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EVTDR--IQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSE 224 (506)
T ss_pred hhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CCccc--eeeeecchhhhCc-CCCccEEEECCCCCCchhhhh
Confidence 3667764333335689999999999999999999884 76433 9999999866443 357999999764210
Q ss_pred --------hH------------------HHHHhhCCCCcEEEEEec
Q psy14971 75 --------VP------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --------i~------------------~~l~~~L~pGGrLv~~~~ 94 (156)
-| +.+.+.|+|||++++-++
T Consensus 225 l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 225 MAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred cCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01 123568999999999765
No 99
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.50 E-value=1.3e-06 Score=66.73 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=64.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...+..++++++|+++++++.+++++.. . .+ ++++.+|..+.....++||+|++....+.++
T Consensus 51 G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--~-~~---i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~ 124 (223)
T TIGR01934 51 GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--P-LN---IEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK 124 (223)
T ss_pred ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--C-CC---ceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHH
Confidence 55554 344443337999999999999999998762 2 35 8999999876433346899999987665433
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|+|||++++...
T Consensus 125 ~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 125 ALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHHHHcCCCcEEEEEEe
Confidence 467889999999998543
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=98.50 E-value=2.4e-06 Score=63.65 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++...... ..+|+++|+++++++.++++++.. +..+ ..+.++.+|..+...+ ..||.|+++.+...
T Consensus 35 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~-~~~~-~~~~~~~~d~~~~~~~-~~~d~vi~n~p~~~~~~~~~~ 109 (188)
T PRK14968 35 GIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN-NIRN-NGVEVIRSDLFEPFRG-DKFDVILFNPPYLPTEEEEEW 109 (188)
T ss_pred CHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc-CCCC-cceEEEeccccccccc-cCceEEEECCCcCCCCchhhh
Confidence 5555433333 489999999999999999999873 5432 0167888998765543 37999998764321
Q ss_pred --------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 --------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|+|||.+++....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 110 DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 224567899999999887654
No 101
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.49 E-value=7.1e-07 Score=70.20 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------HHHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------PKEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------~~~l~~~L~pGG 87 (156)
+.+|+++|++++|++.|+++... ..++.+|+........+||+|+++.+.... ...+.+.|+|||
T Consensus 64 ~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 64 GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG 134 (251)
T ss_pred CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence 47999999999999999987532 457888986533335689999998876543 246788999999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
++++...
T Consensus 135 ~l~~~~~ 141 (251)
T PRK10258 135 VVAFTTL 141 (251)
T ss_pred EEEEEeC
Confidence 9999753
No 102
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.49 E-value=1.2e-06 Score=69.96 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=62.2
Q ss_pred chHHH-HHHhcCCC--CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHH
Q psy14971 2 GDLNV-IVGIKGER--ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~--g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
|+++. ++..+... ..|+++|+++++++.|+++. .+ +++..+|+.+.....++||.|+...+ +...+.
T Consensus 97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~---~~~~~~d~~~lp~~~~sfD~I~~~~~-~~~~~e 166 (272)
T PRK11088 97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQ---VTFCVASSHRLPFADQSLDAIIRIYA-PCKAEE 166 (272)
T ss_pred CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CC---CeEEEeecccCCCcCCceeEEEEecC-CCCHHH
Confidence 55554 45454332 47999999999999997653 35 88899998764334578999998765 344567
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|||||++++....
T Consensus 167 ~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 167 LARVVKPGGIVITVTPG 183 (272)
T ss_pred HHhhccCCCEEEEEeCC
Confidence 89999999999997654
No 103
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.49 E-value=8.1e-07 Score=68.35 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.++......++..+|+++|+++++++.+++++. ++ ++++.+|..+......+||+|++....+.+
T Consensus 46 G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~---~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~ 117 (240)
T TIGR02072 46 GYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----EN---VQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQA 117 (240)
T ss_pred cHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CC---CeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHH
Confidence 5555443334567889999999999999987653 25 889999987644345689999999877543
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||++++...
T Consensus 118 l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 118 LSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHcCCCcEEEEEeC
Confidence 2467889999999998653
No 104
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.48 E-value=7e-07 Score=68.81 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|++++.+...+...+|+|+|++|+.++..++|++.+ ++.++ +.++.+|+.+-.+ ...||+|+++-+.. +..+..
T Consensus 113 G~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv~~~--i~~~~~D~~~~~~-~~~~drvim~lp~~~~~fl~~~ 188 (200)
T PF02475_consen 113 GPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-KVENR--IEVINGDAREFLP-EGKFDRVIMNLPESSLEFLDAA 188 (200)
T ss_dssp TTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-T-TTT--EEEEES-GGG----TT-EEEEEE--TSSGGGGHHHH
T ss_pred cHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-CCCCe--EEEEcCCHHHhcC-ccccCEEEECChHHHHHHHHHH
Confidence 788887666566689999999999999999999987 77665 9999999987555 67899999988754 344677
Q ss_pred HhhCCCCcEEE
Q psy14971 80 LAQLKPGGRLV 90 (156)
Q Consensus 80 ~~~L~pGGrLv 90 (156)
...+++||.+-
T Consensus 189 ~~~~~~~g~ih 199 (200)
T PF02475_consen 189 LSLLKEGGIIH 199 (200)
T ss_dssp HHHEEEEEEEE
T ss_pred HHHhcCCcEEE
Confidence 88899998874
No 105
>PRK06922 hypothetical protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=77.74 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=64.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i---- 75 (156)
|.++.......|.+.|+++|+++.|++.|+++... .+ .+ +.++++|+.+.. ...++||.|+++...+++
T Consensus 430 G~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g-~~---ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syI 504 (677)
T PRK06922 430 GVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EG-RS---WNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYI 504 (677)
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cC-CC---eEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhc
Confidence 55554333334679999999999999999999866 24 35 889999986532 234689999987654432
Q ss_pred ---------------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ---------------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ---------------~~~l~~~L~pGGrLv~~~~ 94 (156)
-..+.+.|||||++++..+
T Consensus 505 p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 505 EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1356789999999999754
No 106
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=76.46 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCC----CCCcCEEEEccCCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACI-- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~-- 73 (156)
+|-.|+.|.+-| ..+|++||.+...++.|++|++.+ |++ .+ +.++.+|+.+-+.. ...||+|+++.+.=
T Consensus 228 TGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN-g~~~~~--~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r 303 (393)
T COG1092 228 TGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN-GLDGDR--HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFAR 303 (393)
T ss_pred CcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc-CCCccc--eeeehhhHHHHHHHHHhcCCcccEEEECCccccc
Confidence 355667776655 369999999999999999999987 652 22 88999999764432 34899999997631
Q ss_pred ---c----------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 ---E----------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 ---~----------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
. +.....+.|+|||.+++..+..
T Consensus 304 ~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 304 SKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 1 1235688999999999987754
No 107
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=9.2e-07 Score=73.09 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=73.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|++|+..+..+. .+|+|+|++|+.++..++|++.+ ++.++ |+.++||+.+..+..+.+|+|+++.... +.-+..
T Consensus 200 Gpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN-~v~~~--v~~i~gD~rev~~~~~~aDrIim~~p~~a~~fl~~A 275 (341)
T COG2520 200 GPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLN-KVEGR--VEPILGDAREVAPELGVADRIIMGLPKSAHEFLPLA 275 (341)
T ss_pred ccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhc-Cccce--eeEEeccHHHhhhccccCCEEEeCCCCcchhhHHHH
Confidence 788887666664 33999999999999999999987 77665 8999999988666557899999998764 344566
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
.+.|++||++.+..-.
T Consensus 276 ~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 276 LELLKDGGIIHYYEFV 291 (341)
T ss_pred HHHhhcCcEEEEEecc
Confidence 7899999999997653
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.4e-06 Score=70.38 Aligned_cols=89 Identities=27% Similarity=0.350 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--c----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--E---- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~---- 74 (156)
+|.+++......+...|+++|++++.++.|++|++.+ |+.+ +.++.+|..+... ++||.|+++.+.- +
T Consensus 121 SG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l~~---~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~ 194 (280)
T COG2890 121 SGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GLVR---VLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPEL 194 (280)
T ss_pred hHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CCcc---EEEEeeecccccC--CceeEEEeCCCCCCCccccc
Confidence 4777876666677789999999999999999999995 8766 7888888776555 3899999987531 1
Q ss_pred h-------H------------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 V-------P------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i-------~------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
. | ..+.+.|+|||.+++-++.
T Consensus 195 ~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 195 LPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred ChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 1 1 1346789999999998874
No 109
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.45 E-value=2.8e-07 Score=74.49 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=71.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i---- 75 (156)
|..+.+|+++...|.|++.|+++..++..++|+++ +|..| +.+...|+....+ ....||+|+++++|+..
T Consensus 98 gKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-~g~~~---v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~ 173 (283)
T PF01189_consen 98 GKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-LGVFN---VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIR 173 (283)
T ss_dssp HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-TT-SS---EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTT
T ss_pred CceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-cCCce---EEEEeeccccccccccccccchhhcCCCccchhhhh
Confidence 55678899998889999999999999999999999 69989 9999888765422 22359999999998742
Q ss_pred --H----------------------HHHHhhC----CCCcEEEEEec
Q psy14971 76 --P----------------------KEILAQL----KPGGRLVFHKG 94 (156)
Q Consensus 76 --~----------------------~~l~~~L----~pGGrLv~~~~ 94 (156)
| +...+.| ||||+||..++
T Consensus 174 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 174 RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 1 1346788 99999999987
No 110
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.45 E-value=9.2e-07 Score=71.15 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=61.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|-+++ +|+.-| .+|+++.++++.++.|++++++ .|+.++ +++..+|..+ ++ .+||+|++-.+..++.
T Consensus 74 G~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-~gl~~~--v~v~~~D~~~-~~--~~fD~IvSi~~~Ehvg~~~~ 145 (273)
T PF02353_consen 74 GGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-AGLEDR--VEVRLQDYRD-LP--GKFDRIVSIEMFEHVGRKNY 145 (273)
T ss_dssp SHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-STSSST--EEEEES-GGG------S-SEEEEESEGGGTCGGGH
T ss_pred cHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-cCCCCc--eEEEEeeccc-cC--CCCCEEEEEechhhcChhHH
Confidence 55554 344444 7999999999999999999998 588665 9999999654 23 3899999988877652
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 146 ~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 146 PAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp HHHHHHHHHHSETTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEec
Confidence 356789999999998643
No 111
>PLN02366 spermidine synthase
Probab=98.41 E-value=1.7e-06 Score=70.76 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=58.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch----------HHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i----------~~~ 78 (156)
..+|+.+|+|+++++.|++.+... .++ ++ ++++.+|+.+-... .+.||+|+++...+.- -+.
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpR---v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~ 191 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPR---VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFES 191 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCc---eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHH
Confidence 478999999999999999998652 012 34 99999998653322 3579999999866432 235
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||+++...+
T Consensus 192 ~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 192 VARALRPGGVVCTQAE 207 (308)
T ss_pred HHHhcCCCcEEEECcC
Confidence 6789999999987543
No 112
>KOG1122|consensus
Probab=98.41 E-value=2.5e-06 Score=71.81 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=73.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc--hH-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE--VP- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~--i~- 76 (156)
|..+.+|.++...|.|+|.|.+...+...++|+.+ +|++| -.+...|+.+.... .+.||+|+++|+|+. +.
T Consensus 254 GKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-lGv~n---tiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~ 329 (460)
T KOG1122|consen 254 GKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-LGVTN---TIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVIS 329 (460)
T ss_pred chHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-hCCCc---eEEEccCcccccccccCcccceeeecCCCCCCcccc
Confidence 67789999999999999999999999999999999 69999 78888888752111 237999999999975 21
Q ss_pred -------------------------HHHHhhCCCCcEEEEEec
Q psy14971 77 -------------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -------------------------~~l~~~L~pGGrLv~~~~ 94 (156)
....+.+++||.||..++
T Consensus 330 K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 330 KDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 123578999999999876
No 113
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.41 E-value=2.7e-06 Score=69.93 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=61.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
.|+++......++ ..|+++|.++.++..++...+. .+. .+ +.++.+|..+. +....||.|++.+...++.
T Consensus 133 ~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~-~~~~~~---i~~~~~d~e~l-p~~~~FD~V~s~~vl~H~~dp~ 206 (322)
T PRK15068 133 NGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL-LGNDQR---AHLLPLGIEQL-PALKAFDTVFSMGVLYHRRSPL 206 (322)
T ss_pred CcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh-cCCCCC---eEEEeCCHHHC-CCcCCcCEEEECChhhccCCHH
Confidence 3666654333354 4799999999999766544332 222 36 99999998653 3357899999988776543
Q ss_pred ---HHHHhhCCCCcEEEEE
Q psy14971 77 ---KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~ 92 (156)
..+.+.|+|||++++.
T Consensus 207 ~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 4678999999999985
No 114
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.40 E-value=2.7e-06 Score=69.79 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=59.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|+++..+...++ ..|+++|.++.|+..++..-+. .+ ..+ +.+..++..+. +....||.|++.+...+++
T Consensus 133 G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~-~~~~~~---v~~~~~~ie~l-p~~~~FD~V~s~gvL~H~~dp~~ 206 (314)
T TIGR00452 133 GYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKL-LDNDKR---AILEPLGIEQL-HELYAFDTVFSMGVLYHRKSPLE 206 (314)
T ss_pred cHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHH-hccCCC---eEEEECCHHHC-CCCCCcCEEEEcchhhccCCHHH
Confidence 666544333444 5899999999999876543322 12 234 78888876553 3345799999998876553
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||+||+..
T Consensus 207 ~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLET 225 (314)
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 46789999999999853
No 115
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=1.9e-06 Score=71.10 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=68.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|-+.+.|.++| ++|+|.|++..|++-|+.|++. ++++. ..+..+ |+.........+|+|.++.+.-.
T Consensus 209 GgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~-y~i~~---~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~ 282 (347)
T COG1041 209 GGILIEAGLMG--ARVIGSDIDERMVRGAKINLEY-YGIED---YPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKG 282 (347)
T ss_pred cHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhh-hCcCc---eeEEEecccccCCCCCCccceEEecCCCCccccccc
Confidence 55556688887 8999999999999999999999 68877 666666 98764333336999999976421
Q ss_pred ---------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ---------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ---------i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.+.|++||++|++..
T Consensus 283 ~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 283 EGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 12456899999999999876
No 116
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.39 E-value=1.3e-06 Score=69.95 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc----------hHHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----------VPKEI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----------i~~~l 79 (156)
..+|+++|+++++++.|++++... +...+ ++++.+|+.+.+.. ..+||+|+++...+. .-+.+
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~---v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPR---VDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCc---eEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 478999999999999999998652 11234 88999998653322 468999999886332 12356
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
.+.|+|||++++...
T Consensus 173 ~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 173 KKALNEDGIFVAQSE 187 (270)
T ss_pred HHHhCCCcEEEEcCC
Confidence 789999999999744
No 117
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.36 E-value=5.6e-07 Score=72.86 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=61.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCC---CCCCcCEEEEccCCC---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACI--- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~--- 73 (156)
|-+++.|.. +...+|++||.+...++.|++|++.+ |+ ++ ++++.+|+.+-+. ..++||.|+++.+.-
T Consensus 135 Ggfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~---~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~ 209 (286)
T PF10672_consen 135 GGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALN-GLDLDR---HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKS 209 (286)
T ss_dssp THHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHT-T-CCTC---EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESS
T ss_pred CHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCccc---eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 556666655 43468999999999999999999986 65 35 9999999865332 246899999998641
Q ss_pred --ch-------HHHHHhhCCCCcEEEEEeccC
Q psy14971 74 --EV-------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 --~i-------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+ -..+++.|+|||.|++.....
T Consensus 210 ~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 210 KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 11 234678999999999877643
No 118
>PRK01581 speE spermidine synthase; Validated
Probab=98.35 E-value=1.6e-06 Score=72.36 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHH--Hh---hh-cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-----------
Q psy14971 13 ERALVLILNHYMKVKSKNQNN--KK---LN-IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----------- 74 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~--l~---~~-~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----------- 74 (156)
+..+|+++|+|+++++.|++. +. +. +.-++ ++++.+|+.+-+.. ...||+|+++..-+.
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR---V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~E 249 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR---VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSE 249 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc---eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHH
Confidence 457999999999999999972 22 10 12234 99999999764332 457999999975431
Q ss_pred hHHHHHhhCCCCcEEEEEec
Q psy14971 75 VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-..+.+.|+|||++++-..
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHHhcCCCcEEEEecC
Confidence 11356789999999988654
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.35 E-value=6.4e-06 Score=53.80 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc---hH----HHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE---VP----KEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~---i~----~~l~~~L~ 84 (156)
+..+++++|.+++.++.++++... .+..+ ++++.+|..+... ...+||.|+++..... .+ ..+.+.|+
T Consensus 20 ~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~ 95 (107)
T cd02440 20 PGARVTGVDISPVALELARKAAAA-LLADN---VEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLK 95 (107)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhc-ccccc---eEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcC
Confidence 568999999999999999965544 24456 8999999876543 3567999999998754 22 35678899
Q ss_pred CCcEEEEE
Q psy14971 85 PGGRLVFH 92 (156)
Q Consensus 85 pGGrLv~~ 92 (156)
+||++++.
T Consensus 96 ~~g~~~~~ 103 (107)
T cd02440 96 PGGVLVLT 103 (107)
T ss_pred CCCEEEEE
Confidence 99999874
No 120
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.34 E-value=2.7e-06 Score=69.57 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=74.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPKE-- 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~~-- 78 (156)
|.+++.+.. ...+|+++|+++++++.|++|++.+ +++| ++++.+|+.+... ....||.|+++.+...+...
T Consensus 185 G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~-~l~~---v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~ 258 (315)
T PRK03522 185 GGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAEL-GLTN---VQFQALDSTQFATAQGEVPDLVLVNPPRRGIGKELC 258 (315)
T ss_pred CHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHH
Confidence 666654433 3479999999999999999999984 8878 9999999865332 23469999999887655443
Q ss_pred -HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecC
Q psy14971 79 -ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLG 128 (156)
Q Consensus 79 -l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~ 128 (156)
+...++|++.+++.+.+.. ....+... . .|+.+.+..+..-|-+
T Consensus 259 ~~l~~~~~~~ivyvsc~p~t----~~rd~~~l-~-~y~~~~~~~~DmFP~T 303 (315)
T PRK03522 259 DYLSQMAPRFILYSSCNAQT----MAKDLAHL-P-GYRIERVQLFDMFPHT 303 (315)
T ss_pred HHHHHcCCCeEEEEECCccc----chhHHhhc-c-CcEEEEEEEeccCCCC
Confidence 3445677665555444321 11122122 2 3666666555444433
No 121
>PRK03612 spermidine synthase; Provisional
Probab=98.30 E-value=2.4e-06 Score=74.43 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred CEEEEEeCCHHHHHHHHHH--Hhhh----cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----------
Q psy14971 15 ALVLILNHYMKVKSKNQNN--KKLN----IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----------- 76 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~--l~~~----~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----------- 76 (156)
.+|+.+|+|+++++.|+++ +... +.-++ ++++.+|+.+.... .++||.|+++...+..+
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dpr---v~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPR---VTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCc---eEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 7999999999999999994 3321 11134 99999998763322 36899999997654322
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|||||++++...
T Consensus 399 ~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 399 RLLKRRLAPDGLLVVQST 416 (521)
T ss_pred HHHHHhcCCCeEEEEecC
Confidence 356789999999998654
No 122
>KOG2915|consensus
Probab=98.29 E-value=6.9e-06 Score=65.82 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=67.8
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCC-CCCC-CCCcCEEEEccCCCc--
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSK-GHAE-EGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~-~~~~-~~~fD~I~i~~~~~~-- 74 (156)
.|.++ .+++.++|.|++++.|.+++.++.|++.++.+ |+ +| +++.+-|.-. +... ...+|+||++.+.+.
T Consensus 116 SGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-gi~~~---vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~A 191 (314)
T KOG2915|consen 116 SGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-GIGDN---VTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEA 191 (314)
T ss_pred cchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-CCCcc---eEEEEeecccCCccccccccceEEEcCCChhhh
Confidence 36677 47899999999999999999999999999996 76 46 9999988643 3332 467999999998874
Q ss_pred hHHHHHhhCCCCc-EEEEE
Q psy14971 75 VPKEILAQLKPGG-RLVFH 92 (156)
Q Consensus 75 i~~~l~~~L~pGG-rLv~~ 92 (156)
+|.. ...||.+| ||+..
T Consensus 192 iPha-~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 192 IPHA-AKILKDEGGRLCSF 209 (314)
T ss_pred hhhh-HHHhhhcCceEEec
Confidence 4544 44777755 77764
No 123
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.28 E-value=4.7e-06 Score=70.03 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
.|.+++.+....+..+|+++|++++.++.+++|++.+ ++++ +++..+|+.........||.|+++..-. .+-+.
T Consensus 68 sG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~~~~---~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~~~l~~ 143 (382)
T PRK04338 68 SGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-GLEN---EKVFNKDANALLHEERKFDVVDIDPFGSPAPFLDS 143 (382)
T ss_pred ccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc---eEEEhhhHHHHHhhcCCCCEEEECCCCCcHHHHHH
Confidence 3667775443323468999999999999999999986 8877 8899999865433235699999986421 22244
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
....+++||.|.+...
T Consensus 144 al~~~~~~gilyvSAt 159 (382)
T PRK04338 144 AIRSVKRGGLLCVTAT 159 (382)
T ss_pred HHHHhcCCCEEEEEec
Confidence 4677899999999744
No 124
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.28 E-value=5.5e-07 Score=70.76 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i-- 75 (156)
||.|+-|..-|. .+|+++|.||..++.|.-|=-.- ++ .+ ++++.||+.+...+ +.+||+|+-+.+.-..
T Consensus 146 GYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~---i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag 220 (287)
T COG2521 146 GYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIA---IKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG 220 (287)
T ss_pred cHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccc---cEEecccHHHHHhcCCccccceEeeCCCccchhh
Confidence 788877766652 49999999999999998774221 22 24 89999999875543 5789999998764221
Q ss_pred ---H----HHHHhhCCCCcEEEEEeccCC
Q psy14971 76 ---P----KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 76 ---~----~~l~~~L~pGGrLv~~~~~~~ 97 (156)
. .++.+.|||||+|+=.+++++
T Consensus 221 eLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 221 ELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred hHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 1 467899999999999998764
No 125
>PLN02823 spermine synthase
Probab=98.28 E-value=3.9e-06 Score=69.41 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc------------hH
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE------------VP 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~------------i~ 76 (156)
+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+..-+.. ...||+|+++..-+. .-
T Consensus 126 ~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dpr---v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~ 202 (336)
T PLN02823 126 TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKR---LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFY 202 (336)
T ss_pred CCCeEEEEECCHHHHHHHHHhcccccccccCCc---eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHH
Confidence 3478999999999999999998641 11234 99999999764433 467999999964321 11
Q ss_pred H-HHHhhCCCCcEEEEEec
Q psy14971 77 K-EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~-~l~~~L~pGGrLv~~~~ 94 (156)
+ .+.+.|+|||.+++..+
T Consensus 203 ~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 203 ERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred HHHHHHhcCCCcEEEEecc
Confidence 3 56778999999998654
No 126
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.24 E-value=8.1e-06 Score=68.63 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=60.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.++. +++.. +.+|+++|+++++++.|+++.+. . + +++..+|..+. .++||.|++.....++
T Consensus 179 G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~---l-~---v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~ 246 (383)
T PRK11705 179 GGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG---L-P---VEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNY 246 (383)
T ss_pred cHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc---C-e---EEEEECchhhc---CCCCCEEEEeCchhhCChHHH
Confidence 55665 34333 36999999999999999999854 2 4 88888887542 3679999987765543
Q ss_pred ---HHHHHhhCCCCcEEEEEec
Q psy14971 76 ---PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ---~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|||||++++...
T Consensus 247 ~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 247 RTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHHHcCCCcEEEEEEc
Confidence 2356789999999999654
No 127
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=1.1e-05 Score=65.23 Aligned_cols=86 Identities=22% Similarity=0.217 Sum_probs=66.6
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---- 75 (156)
|-+++- |+.. +.+|+|+++|++..+.|+++++. .|++ + |+++..|-.+. .++||+|++-++.+++
T Consensus 84 G~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~-~gl~~~---v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~ 154 (283)
T COG2230 84 GGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAA-RGLEDN---VEVRLQDYRDF---EEPFDRIVSVGMFEHVGKEN 154 (283)
T ss_pred hHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHH-cCCCcc---cEEEecccccc---ccccceeeehhhHHHhCccc
Confidence 455553 4443 48999999999999999999998 5987 6 99999885542 2459999998876643
Q ss_pred -H---HHHHhhCCCCcEEEEEeccC
Q psy14971 76 -P---KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -~---~~l~~~L~pGGrLv~~~~~~ 96 (156)
+ ..+.+.|+|||++++...+.
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecC
Confidence 3 35678999999999987543
No 128
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.21 E-value=6.4e-06 Score=69.91 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=62.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++.+... ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.++ ....||+|+++.+...+..
T Consensus 304 G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~-~~~n---v~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~ 377 (431)
T TIGR00479 304 GTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN-GIAN---VEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAA 377 (431)
T ss_pred CHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh-CCCc---eEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCH
Confidence 6666543332 368999999999999999999985 8888 9999999865322 1346999999988655322
Q ss_pred H---HHhhCCCCcEEEEEec
Q psy14971 78 E---ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~---l~~~L~pGGrLv~~~~ 94 (156)
. ....|+|++.+++...
T Consensus 378 ~~l~~l~~l~~~~ivyvsc~ 397 (431)
T TIGR00479 378 EVLRTIIELKPERIVYVSCN 397 (431)
T ss_pred HHHHHHHhcCCCEEEEEcCC
Confidence 2 2345889876666443
No 129
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.20 E-value=8.9e-06 Score=68.10 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=64.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPKE-- 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~~-- 78 (156)
|.+++.+. ....+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ..+||.|+++-+...+...
T Consensus 245 G~~~l~la--~~~~~v~~vE~~~~av~~a~~N~~~~-~~~~---~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l 318 (374)
T TIGR02085 245 GGFGLHCA--GPDTQLTGIEIESEAIACAQQSAQML-GLDN---LSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELC 318 (374)
T ss_pred cHHHHHHh--hcCCeEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHH
Confidence 55665443 33479999999999999999999984 8888 99999998653322 2469999999887654432
Q ss_pred -HHhhCCCCcEEEEEecc
Q psy14971 79 -ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 -l~~~L~pGGrLv~~~~~ 95 (156)
....++|++.+++...+
T Consensus 319 ~~l~~~~p~~ivyvsc~p 336 (374)
T TIGR02085 319 DYLSQMAPKFILYSSCNA 336 (374)
T ss_pred HHHHhcCCCeEEEEEeCH
Confidence 23467888877776643
No 130
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.18 E-value=1.1e-05 Score=62.38 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.++. +++..++.++|+++|+++ | . ...+ ++++++|+.+.. ...++||.|+++.+.
T Consensus 63 G~~t~~l~~~~~~~~~V~aVDi~~-~--------~---~~~~---v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 63 GGWSQYAVTQIGDKGRVIACDILP-M--------D---PIVG---VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CHHHHHHHHHcCCCceEEEEeccc-c--------c---CCCC---cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 56664 667778889999999998 1 1 2356 999999987631 224689999998753
Q ss_pred Cc-----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 73 IE-----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~-----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
.. +-..+.+.|+|||++++.+-
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 21 12456789999999999543
No 131
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.16 E-value=1.5e-05 Score=61.35 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=63.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i----- 75 (156)
|.++......+ .+|+++|.++.+++.+++++... +..+ +++..+|+.+.... ..+||.|++......+
T Consensus 57 G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~ 130 (224)
T TIGR01983 57 GLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD-PLLK---IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQA 130 (224)
T ss_pred CHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHH
Confidence 44554332333 57999999999999999999873 6556 89999887653322 3689999998655433
Q ss_pred -HHHHHhhCCCCcEEEEEec
Q psy14971 76 -PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||.+++...
T Consensus 131 ~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 131 FIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 2456789999999987653
No 132
>PLN02672 methionine S-methyltransferase
Probab=98.15 E-value=1.4e-05 Score=74.51 Aligned_cols=66 Identities=17% Similarity=-0.044 Sum_probs=51.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC----------------CCccceEEEEccCCCCCCC-CCCcC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ----------------NRKSFKNVSVKDGSKGHAE-EGPYD 64 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~----------------~n~~~v~~~~gD~~~~~~~-~~~fD 64 (156)
|.+++.+....+.++|+++|+++++++.|++|++.+ ++ ++ ++++++|..+.... ..+||
T Consensus 130 G~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~~~~~~~~~~~l~~r---V~f~~sDl~~~~~~~~~~fD 205 (1082)
T PLN02672 130 GWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN-ALDDDGLPVYDGEGKTLLDR---VEFYESDLLGYCRDNNIELD 205 (1082)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-Cccccccccccccccccccc---EEEEECchhhhccccCCceE
Confidence 677776555556689999999999999999999873 32 24 99999998876543 23799
Q ss_pred EEEEccC
Q psy14971 65 IIHLGAA 71 (156)
Q Consensus 65 ~I~i~~~ 71 (156)
+|+++-+
T Consensus 206 lIVSNPP 212 (1082)
T PLN02672 206 RIVGCIP 212 (1082)
T ss_pred EEEECCC
Confidence 9999875
No 133
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.14 E-value=2.4e-05 Score=63.57 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=53.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCC-----CcCEEEEccCCCchH--------HHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEG-----PYDIIHLGAACIEVP--------KEIL 80 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~-----~fD~I~i~~~~~~i~--------~~l~ 80 (156)
..+|+++|++++|++.|++++...+..-+ +.+++||..+..+-.. +...++++....+++ ..+.
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~---v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~ 164 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLE---VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIR 164 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCce---EEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHH
Confidence 47899999999999999999876211124 7778999876432222 233455555555443 3567
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+.|+|||++++.+.
T Consensus 165 ~~L~pgG~~lig~d 178 (301)
T TIGR03438 165 QLLGPGGGLLIGVD 178 (301)
T ss_pred HhcCCCCEEEEecc
Confidence 89999999998653
No 134
>KOG4300|consensus
Probab=98.13 E-value=1e-05 Score=62.65 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceE-EEEccCCCCC-CCCCCcCEEEEccCC---Cc---hHHHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKN-VSVKDGSKGH-AEEGPYDIIHLGAAC---IE---VPKEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~-~~~gD~~~~~-~~~~~fD~I~i~~~~---~~---i~~~l~~~L~ 84 (156)
|..+|+.+|.++.|-+.|.+.++.. ...+ +. |+++++.... ..+++||.|+.+-.. .+ ...++.+.|+
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~-k~~~---~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEK-KPLQ---VERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR 173 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhc-cCcc---eEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC
Confidence 5679999999999999999999874 4455 66 9999987643 146899999988643 22 2246789999
Q ss_pred CCcEEEEEec
Q psy14971 85 PGGRLVFHKG 94 (156)
Q Consensus 85 pGGrLv~~~~ 94 (156)
|||++++...
T Consensus 174 pgG~iifiEH 183 (252)
T KOG4300|consen 174 PGGRIIFIEH 183 (252)
T ss_pred CCcEEEEEec
Confidence 9999999753
No 135
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.12 E-value=3e-05 Score=60.19 Aligned_cols=77 Identities=23% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-----------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-----------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-----------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----- 76 (156)
+-.|+|+|+++..++.+.+..... ....+ |+++++|..+.... .++||.|+-.+...++|
T Consensus 56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~ 132 (213)
T TIGR03840 56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN---IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQ 132 (213)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc---eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHH
Confidence 468999999999999864422100 01124 99999999774332 45799998877655554
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 133 ~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 133 RYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred HHHHHHHHHcCCCCeEEEEE
Confidence 35789999999866543
No 136
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.09 E-value=1.2e-05 Score=64.81 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-------chHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------~i~~~l 79 (156)
++...+++..|+.+|++++..+.|++-++...|+.++ ++|+++|+.+...+...||.|++.+-+. ++-+.+
T Consensus 139 la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~--m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l 216 (276)
T PF03059_consen 139 LAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKR--MSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHL 216 (276)
T ss_dssp HH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SS--EEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHH
T ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCC--eEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHH
Confidence 4555666789999999999999999887721355444 9999999876444457899999988664 355678
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.++||.+|++=.
T Consensus 217 ~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 217 AKHMAPGARLVVRS 230 (276)
T ss_dssp HHHS-TTSEEEEEE
T ss_pred HhhCCCCcEEEEec
Confidence 88899999988853
No 137
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.08 E-value=1.9e-05 Score=67.74 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=60.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CC-CCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HA-EEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~-~~~~fD~I~i~~~~~~i~-- 76 (156)
|.++. ++.. ..+|+++|+++++++.+++... ..++ ++++++|+... .+ ...+||.|++..+...++
T Consensus 49 G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~---~~~~---i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~ 119 (475)
T PLN02336 49 GRFTGELAKK---AGQVIALDFIESVIKKNESING---HYKN---VKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDK 119 (475)
T ss_pred CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc---cCCc---eEEEEecccccccCCCCCCEEEEehhhhHHhCCHH
Confidence 55554 3333 3699999999999998865332 2356 99999998632 22 246899999998876543
Q ss_pred ------HHHHhhCCCCcEEEEEe
Q psy14971 77 ------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 120 ~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 120 EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEe
Confidence 34678899999998853
No 138
>KOG1270|consensus
Probab=98.08 E-value=5.6e-06 Score=65.99 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=59.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCcc---ceEEEEccCCCCCCCCCCcCEEEEccCCCch--H
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKS---FKNVSVKDGSKGHAEEGPYDIIHLGAACIEV--P 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~---~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i--~ 76 (156)
|-|+.-...+| +.|+|+|.++++++.|+++.... -..+.. .+++.+.|+.. . .++||+|++.-.++++ |
T Consensus 101 GLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~-~--~~~fDaVvcsevleHV~dp 174 (282)
T KOG1270|consen 101 GLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG-L--TGKFDAVVCSEVLEHVKDP 174 (282)
T ss_pred cccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh-c--ccccceeeeHHHHHHHhCH
Confidence 44554223334 89999999999999999994321 111100 04555555543 2 3569999999988877 4
Q ss_pred H----HHHhhCCCCcEEEEEecc
Q psy14971 77 K----EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~----~l~~~L~pGGrLv~~~~~ 95 (156)
. .+.+.|||||+|++..-.
T Consensus 175 ~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHHHHHhCCCCceEeeehh
Confidence 3 568999999999998653
No 139
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.5e-05 Score=59.55 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
+|.|++-|.++|+ .+|+++|+|+++++.+++|..+ ++ .+ |.|+.+|..+. .++||.+++|.+.
T Consensus 56 TG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~-g~---v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 56 TGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LL-GD---VEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred cCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hC-Cc---eEEEEcchhhc---CCccceEEECCCC
Confidence 4889999999997 8999999999999999999998 34 46 99999998763 3578988888764
No 140
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.06 E-value=2.9e-05 Score=59.47 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=66.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i--- 75 (156)
|...+-.+...|+..++|+|++...+..|.+++.+ .++.| +.++.+|+...+ ...++.|.|++..+-+..
T Consensus 29 G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-~~l~N---v~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~r 104 (195)
T PF02390_consen 29 GEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-RGLKN---VRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKR 104 (195)
T ss_dssp SHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-HTTSS---EEEEES-CTTHHHHHSTTTSEEEEEEES-----SGG
T ss_pred CHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-hcccc---eEEEEccHHHHHhhcccCCchheEEEeCCCCCcccc
Confidence 44444333456789999999999999999999999 49999 999999998733 235789999999876521
Q ss_pred -----------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 -----------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -----------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||+|.+....
T Consensus 105 H~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 105 HHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp GGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred hhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 13567899999999987653
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.06 E-value=3.5e-05 Score=59.81 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCchH------HHHHhhCCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEVP------KEILAQLKPG 86 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i~------~~l~~~L~pG 86 (156)
..+|+++|.++++++.|++++.. .+. + ++++.+|..+.. ...+.||+|++......++ ..+.+.|+||
T Consensus 70 ~~~v~~iD~s~~~~~~a~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 70 GADVTGIDASEENIEVARLHALE-SGL-K---IDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-cCC-c---eEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 36899999999999999999877 354 5 888888876532 1346899999977665433 4567899999
Q ss_pred cEEEEEec
Q psy14971 87 GRLVFHKG 94 (156)
Q Consensus 87 GrLv~~~~ 94 (156)
|++++...
T Consensus 145 G~l~v~~~ 152 (233)
T PRK05134 145 GLVFFSTL 152 (233)
T ss_pred cEEEEEec
Confidence 99998653
No 142
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.05 E-value=3.1e-05 Score=59.69 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=47.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++. ++... +..+|+++|+++++++.|++++. + ++++.+|+.+.. ..+.||.|++.....+++
T Consensus 55 G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~------~---~~~~~~d~~~~~-~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 55 GMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP------N---INIIQGSLFDPF-KDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC------C---CcEEEeeccCCC-CCCCEEEEEECChhhhCC
Confidence 55554 44443 45899999999999999997643 3 667889987733 357899999999887664
No 143
>KOG2899|consensus
Probab=98.04 E-value=1e-05 Score=63.96 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhh
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKL 36 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~ 36 (156)
.|+|++ ||...++ ..|+++|||+-+++.|+++++.
T Consensus 69 sG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 69 SGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 488886 6888886 7799999999999999999875
No 144
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.03 E-value=1.3e-05 Score=66.76 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=62.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----------------CCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----------------EGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----------------~~~fD 64 (156)
.|.+++....- ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.+.. ...||
T Consensus 217 ~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D 290 (362)
T PRK05031 217 NGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN-GIDN---VQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFS 290 (362)
T ss_pred ccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh-CCCc---EEEEECCHHHHHHHHhhcccccccccccccCCCCC
Confidence 36667632221 369999999999999999999985 8888 99999998653211 12589
Q ss_pred EEEEccCCCchHHHHHhhC-CCCcEEEEEec
Q psy14971 65 IIHLGAACIEVPKEILAQL-KPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L-~pGGrLv~~~~ 94 (156)
.|++|.+...+.+.+.+.| ++++.+++...
T Consensus 291 ~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~ 321 (362)
T PRK05031 291 TIFVDPPRAGLDDETLKLVQAYERILYISCN 321 (362)
T ss_pred EEEECCCCCCCcHHHHHHHHccCCEEEEEeC
Confidence 9999999877655554443 56665555444
No 145
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.02 E-value=2.9e-05 Score=62.82 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=62.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhc-CC-CCccceEEEEccCCCCCCCC-CCcCEEEEccCCCch----------HHH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNI-KQ-NRKSFKNVSVKDGSKGHAEE-GPYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~-g~-~n~~~v~~~~gD~~~~~~~~-~~fD~I~i~~~~~~i----------~~~ 78 (156)
.+-.+++.+|+|+++++.||+.+.... +. +.| ++++.+|+.+-..+. ..||+|+++..-+.= -+.
T Consensus 98 ~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpR--v~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~ 175 (282)
T COG0421 98 LPVERITMVEIDPAVIELARKYLPEPSGGADDPR--VEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEG 175 (282)
T ss_pred CCcceEEEEEcCHHHHHHHHHhccCcccccCCCc--eEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHH
Confidence 345899999999999999999987631 11 222 999999998755543 369999999865521 246
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+++|.+++..+
T Consensus 176 ~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 176 CRRALKEDGIFVAQAG 191 (282)
T ss_pred HHHhcCCCcEEEEecC
Confidence 7899999999999844
No 146
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.99 E-value=4.2e-05 Score=58.31 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=64.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---C-CCCcCEEEEccCCCc--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---E-EGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~-~~~fD~I~i~~~~~~-- 74 (156)
.|.+++.|...|. .+|+++|.+++.++.+++|++.+ ++.++ ++++.+|+.+.+. . ...||.|+++.+...
T Consensus 60 sG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~~~~~--~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~ 135 (189)
T TIGR00095 60 SGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-KSGEQ--AEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGA 135 (189)
T ss_pred CcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCccc--EEEEehhHHHHHHHhhccCCCceEEEECcCCCCCc
Confidence 3777777766665 58999999999999999999984 77522 9999999854321 1 234899999987642
Q ss_pred hH---HHHH--hhCCCCcEEEEEec
Q psy14971 75 VP---KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~---~~l~--~~L~pGGrLv~~~~ 94 (156)
+. +.+. ..|+++|.+|+-..
T Consensus 136 ~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 136 LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 22 2222 35788998887654
No 147
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.99 E-value=4.7e-05 Score=59.75 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=58.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHh------------hhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCchH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKK------------LNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~------------~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i~ 76 (156)
..+-.|+|+|+++..++.+.+... . ..-.+ |++.+||..+..+ ..++||.|+--++...+|
T Consensus 63 ~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~-~~~~~---i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp 138 (226)
T PRK13256 63 SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL-YKGDD---IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALP 138 (226)
T ss_pred hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccce-eccCc---eEEEEccCcCCCccccccCCcCeeeeehhHhcCC
Confidence 345689999999999999866321 1 11135 9999999987432 136899999988877766
Q ss_pred H--------HHHhhCCCCcEEEEEec
Q psy14971 77 K--------EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~--------~l~~~L~pGGrLv~~~~ 94 (156)
+ .+.+.|+|||++++..-
T Consensus 139 p~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 139 NDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4 46788999999998764
No 148
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.97 E-value=8e-05 Score=56.78 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=66.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC-chH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI-EVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~-~i~ 76 (156)
+|-|++.|.--|. .+|+.||.+.+.+...++|++. ++...+ .+++.+|+...+ ....+||.||+|.+.. .+.
T Consensus 54 SGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~-l~~~~~--~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~ 129 (187)
T COG0742 54 SGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKA-LGLEGE--ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL 129 (187)
T ss_pred ccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHH-hCCccc--eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh
Confidence 4667776655554 7999999999999999999998 685433 899999987432 2234699999999886 222
Q ss_pred --H--HH----HhhCCCCcEEEEEec
Q psy14971 77 --K--EI----LAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~--~l----~~~L~pGGrLv~~~~ 94 (156)
. .+ ...|+|+|.+|+-..
T Consensus 130 ~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 130 DKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 11 256999999999765
No 149
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.96 E-value=8e-05 Score=57.41 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++..... ...+|+++|+++++++.|++++... +. ++ +++.++|+... + .+||+|++...+..++
T Consensus 67 G~~~~~la~--~~~~v~gvD~s~~~i~~a~~~~~~~-~~~~~---i~~~~~d~~~~-~--~~fD~ii~~~~l~~~~~~~~ 137 (219)
T TIGR02021 67 GLLSIELAK--RGAIVKAVDISEQMVQMARNRAQGR-DVAGN---VEFEVNDLLSL-C--GEFDIVVCMDVLIHYPASDM 137 (219)
T ss_pred CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhc-CCCCc---eEEEECChhhC-C--CCcCEEEEhhHHHhCCHHHH
Confidence 555543322 2469999999999999999999873 54 36 99999998653 2 6799999877665443
Q ss_pred ----HHHHhhCCCCcEEEE
Q psy14971 77 ----KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~ 91 (156)
..+.+.+++++.+.+
T Consensus 138 ~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 138 AKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHHHHHHHHhCCCEEEEE
Confidence 234455665544433
No 150
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.96 E-value=9.8e-06 Score=64.24 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cC--CCCccceEEEEccCCCCCCC-CC-CcCEEEEccCCCch----------HHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IK--QNRKSFKNVSVKDGSKGHAE-EG-PYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g--~~n~~~v~~~~gD~~~~~~~-~~-~fD~I~i~~~~~~i----------~~~ 78 (156)
..+|+.+|+|+++++.|++.+... .+ -++ ++++.+|+..-+.. .. .||.|+++..-+.- -+.
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r---~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPR---VRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQL 176 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTT---EEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHH
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCc---eEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHH
Confidence 479999999999999999988652 11 134 99999999653332 23 79999998875421 245
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||.+++...
T Consensus 177 ~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 177 CKRRLKPDGVLVLQAG 192 (246)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHhhcCCCcEEEEEcc
Confidence 6899999999999874
No 151
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.96 E-value=7.4e-06 Score=62.24 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=63.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCch-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i- 75 (156)
+|-+++.|.--|. .+|+.||.+++.++..++|++. ++..++ ++++.+|+...+. ...+||.||+|.+...-
T Consensus 53 SGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~-l~~~~~--~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~ 128 (183)
T PF03602_consen 53 SGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEK-LGLEDK--IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL 128 (183)
T ss_dssp TSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHH-HT-GGG--EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH
T ss_pred cCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHH-hCCCcc--eeeeccCHHHHHHhhcccCCCceEEEECCCcccch
Confidence 4667777655553 7999999999999999999999 587654 8999999754332 24789999999887532
Q ss_pred --HH---HHH--hhCCCCcEEEEEecc
Q psy14971 76 --PK---EIL--AQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --~~---~l~--~~L~pGGrLv~~~~~ 95 (156)
++ .+. ..|+++|.+|+-...
T Consensus 129 ~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 129 YYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 32 333 578899999987653
No 152
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.96 E-value=8e-05 Score=55.32 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=56.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---H
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---E 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---~ 78 (156)
|.++..+... .++|+++|+++.+++.+++++.. .+| ++++.+|+.+.......||.|+.+.+.....+ .
T Consensus 25 G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~---v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~~~~i~~ 96 (169)
T smart00650 25 GALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADN---LTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFK 96 (169)
T ss_pred cHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCC---EEEEECchhcCCccccCCCEEEECCCcccHHHHHHH
Confidence 5566533222 47999999999999999999864 246 99999999875444446999999877653222 3
Q ss_pred HHhh--CCCCcEEEEE
Q psy14971 79 ILAQ--LKPGGRLVFH 92 (156)
Q Consensus 79 l~~~--L~pGGrLv~~ 92 (156)
+.+. +.++|.+++-
T Consensus 97 ~l~~~~~~~~~~l~~q 112 (169)
T smart00650 97 LLEEPPAFRDAVLMVQ 112 (169)
T ss_pred HHhcCCCcceEEEEEE
Confidence 3332 2356666554
No 153
>PRK00536 speE spermidine synthase; Provisional
Probab=97.95 E-value=9.1e-05 Score=59.35 Aligned_cols=88 Identities=11% Similarity=-0.082 Sum_probs=60.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~ 77 (156)
|+.+.+=+.+.-..+|+-+|+|+++++.+|+.+... +.-++ ++++.. ..+ .....||+|+++...+ +.-+
T Consensus 82 GDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~-~~~--~~~~~fDVIIvDs~~~~~fy~ 155 (262)
T PRK00536 82 FDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQ-LLD--LDIKKYDLIICLQEPDIHKID 155 (262)
T ss_pred CchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeeh-hhh--ccCCcCCEEEEcCCCChHHHH
Confidence 555666555543359999999999999999977652 22233 777762 211 1135799999996543 3335
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|+|||.+|.-.+.
T Consensus 156 ~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 156 GLKRMLKEDGVFISVAKH 173 (262)
T ss_pred HHHHhcCCCcEEEECCCC
Confidence 688999999999996553
No 154
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.94 E-value=3.4e-05 Score=64.14 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=62.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----------------CCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----------------EGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----------------~~~fD 64 (156)
.|.+++....- ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ...||
T Consensus 208 ~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~-~~~~---v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 281 (353)
T TIGR02143 208 NGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAAN-NIDN---VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCS 281 (353)
T ss_pred ccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEEcCHHHHHHHHhhccccccccccccccCCCC
Confidence 36677643222 259999999999999999999985 8888 99999998653221 11389
Q ss_pred EEEEccCCCchHHHH-HhhCCCCcEEEEEec
Q psy14971 65 IIHLGAACIEVPKEI-LAQLKPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l-~~~L~pGGrLv~~~~ 94 (156)
.|++|-+...+.+.+ ...++|++.+++.+.
T Consensus 282 ~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~ 312 (353)
T TIGR02143 282 TIFVDPPRAGLDPDTCKLVQAYERILYISCN 312 (353)
T ss_pred EEEECCCCCCCcHHHHHHHHcCCcEEEEEcC
Confidence 999999976655444 334456665555443
No 155
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.92 E-value=9.5e-05 Score=58.07 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=70.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i-- 75 (156)
|...+ || ...|.--++|||+....+..|.+.+.+ .+++| +.++++||.+.+ .++++.|.|++..+-+.-
T Consensus 60 G~~l~~~A-~~nP~~nfiGiEi~~~~v~~~l~k~~~-~~l~N---lri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKk 134 (227)
T COG0220 60 GEFLVEMA-KKNPEKNFLGIEIRVPGVAKALKKIKE-LGLKN---LRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKK 134 (227)
T ss_pred CHHHHHHH-HHCCCCCEEEEEEehHHHHHHHHHHHH-cCCCc---EEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCc
Confidence 44333 44 446778999999999999999999999 59888 999999997643 345689999999986532
Q ss_pred ------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||.|.+.+..
T Consensus 135 RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 135 RHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred cccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 24678999999999998764
No 156
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.91 E-value=8.8e-05 Score=60.90 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=49.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
.|.+++..... +.+|+++|++++|++.|+++.+. .+ ..+ +++..+|..+. .+.||.|++.....++
T Consensus 155 tG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~---~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 155 TGSLAIPLALE--GAIVSASDISAAMVAEAERRAKE-ALAALPPEVL---PKFEANDLESL---SGKYDTVTCLDVLIHY 225 (315)
T ss_pred CCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh-cccccccccc---eEEEEcchhhc---CCCcCEEEEcCEEEec
Confidence 36666543333 36999999999999999999876 22 235 88999886532 3679999988777666
Q ss_pred HH
Q psy14971 76 PK 77 (156)
Q Consensus 76 ~~ 77 (156)
|+
T Consensus 226 p~ 227 (315)
T PLN02585 226 PQ 227 (315)
T ss_pred CH
Confidence 53
No 157
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=6.8e-05 Score=62.92 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=66.8
Q ss_pred chHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC--chHH
Q psy14971 2 GDLNVIVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI--EVPK 77 (156)
Q Consensus 2 G~la~la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~--~i~~ 77 (156)
|.+++-+..- +...+|+++|++++.++.+++|++.+ +..+ ++++++|+...... ...||.|+++.--. .+-+
T Consensus 56 G~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N-~~~~---~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld 131 (374)
T TIGR00308 56 GIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN-SVEN---IEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVD 131 (374)
T ss_pred hHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc---EEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHH
Confidence 5566654433 22368999999999999999999985 7777 99999998764432 35699999988322 2335
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
...+.+++||.|.+...
T Consensus 132 ~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 132 SAIQASAERGLLLVTAT 148 (374)
T ss_pred HHHHhcccCCEEEEEec
Confidence 67788999999999743
No 158
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.87 E-value=7.2e-05 Score=58.46 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH----
Q psy14971 4 LNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 4 la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~---- 76 (156)
++.++.++++.|.|+|+|.++...+.--.-.++ . +| |-.+.+|+..+..- -+..|.||.+-+-++=.
T Consensus 88 VSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R-~N---IiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~ 161 (229)
T PF01269_consen 88 VSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--R-PN---IIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARIAA 161 (229)
T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--S-TT---EEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHH
T ss_pred cchhhhccCCCCcEEEEEecchhHHHHHHHhcc--C-Cc---eeeeeccCCChHHhhcccccccEEEecCCChHHHHHHH
Confidence 467899999999999999999554443322222 1 47 99999999764221 25789999999877533
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
.+....||+||.+++.+.
T Consensus 162 ~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 162 LNARHFLKPGGHLIISIK 179 (229)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHhhccCCcEEEEEEe
Confidence 344568999999999864
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.86 E-value=6.9e-05 Score=56.57 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=52.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.++. ++....+.++|+++|+++.+ . . .+ ++++.+|..+.. .....||+|+++++.
T Consensus 44 G~~~~~l~~~~~~~~~v~~vDis~~~---------~-~--~~---i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 44 GGWSQVAVEQVGGKGRVIAVDLQPMK---------P-I--EN---VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CHHHHHHHHHhCCCceEEEEeccccc---------c-C--CC---ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 55554 45555566899999999864 2 1 35 888888976531 123569999997642
Q ss_pred C-----------------chHHHHHhhCCCCcEEEEEec
Q psy14971 73 I-----------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~-----------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
+ .+-..+.+.|+|||++++...
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 112346789999999999543
No 160
>PRK06202 hypothetical protein; Provisional
Probab=97.86 E-value=0.00011 Score=57.19 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=48.3
Q ss_pred chHHH-HHHh---cCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGI---KGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l---~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.++. ++.. .|+..+|+++|++++|++.|+++... .+ +++..+++.......++||+|+++...+++++
T Consensus 72 G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~---~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 72 GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PG---VTFRQAVSDELVAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CC---CeEEEEecccccccCCCccEEEECCeeecCCh
Confidence 56553 3433 35567999999999999999988654 24 56666655432223468999999999887754
No 161
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.86 E-value=1.6e-06 Score=59.42 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=39.4
Q ss_pred chHH-HHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCC--c
Q psy14971 2 GDLN-VIVGIKGERA--LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACI--E 74 (156)
Q Consensus 2 G~la-~la~l~g~~g--~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~--~ 74 (156)
|..+ .+++.+.+.+ +++++|..+. .+.+++.+++. ++.++ ++++.|+..+.++. ..+||.|++++.-. .
T Consensus 8 G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~--~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~ 83 (106)
T PF13578_consen 8 GYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDR--VEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEA 83 (106)
T ss_dssp -------------------EEEESS-------------G-GG-BT--EEEEES-THHHHHHHHH--EEEEEEES---HHH
T ss_pred ccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCe--EEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHH
Confidence 4444 3555555544 8999999996 45555555542 44332 99999998654433 36899999999743 2
Q ss_pred h---HHHHHhhCCCCcEEEEE
Q psy14971 75 V---PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 75 i---~~~l~~~L~pGGrLv~~ 92 (156)
+ -+.+.+.|+|||.+++.
T Consensus 84 ~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 84 VLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 2 24578899999999874
No 162
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.83 E-value=0.00013 Score=55.05 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred chHHHHHHhcCCCCE---------EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERAL---------VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~---------V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
|-+.+.|.+.+.... +++.|+++++++.|++|++. .|+... +.+..+|+.+.....+.+|.|+++.+.
T Consensus 40 GtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~~~~--i~~~~~D~~~l~~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 40 GTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGVEDY--IDFIQWDARELPLPDGSVDAIVTNPPY 116 (179)
T ss_dssp SHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT-CGG--EEEEE--GGGGGGTTSBSCEEEEE--S
T ss_pred CHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-cccCCc--eEEEecchhhcccccCCCCEEEECcch
Confidence 555555666665555 99999999999999999999 487654 899999988644345689999999875
Q ss_pred C
Q psy14971 73 I 73 (156)
Q Consensus 73 ~ 73 (156)
-
T Consensus 117 G 117 (179)
T PF01170_consen 117 G 117 (179)
T ss_dssp T
T ss_pred h
Confidence 3
No 163
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.83 E-value=3.5e-05 Score=55.61 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=49.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH------HHHhhCCCCcE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK------EILAQLKPGGR 88 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~------~l~~~L~pGGr 88 (156)
.+|+++|+++.+++. . + +....-+........++||.|++....+++++ .+.+.|||||+
T Consensus 45 ~~~~g~D~~~~~~~~------~-----~---~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 45 FEVTGVDISPQMIEK------R-----N---VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp SEEEEEESSHHHHHH------T-----T---SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred CEEEEEECCHHHHhh------h-----h---hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 499999999999988 2 1 22222222232334578999999999887763 56899999999
Q ss_pred EEEEeccC
Q psy14971 89 LVFHKGLH 96 (156)
Q Consensus 89 Lv~~~~~~ 96 (156)
+++.....
T Consensus 111 l~~~~~~~ 118 (161)
T PF13489_consen 111 LVISDPNR 118 (161)
T ss_dssp EEEEEEBT
T ss_pred EEEEEcCC
Confidence 99988653
No 164
>KOG1271|consensus
Probab=97.82 E-value=0.00015 Score=55.29 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=59.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------------chHHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--------------EVPKEI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--------------~i~~~l 79 (156)
.+..+++|.++..++.|+...++. +++|. |+|.+.|...+....+.||.|+=-+... -+-+.+
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~-~~~n~--I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v 167 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERD-GFSNE--IRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSV 167 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhc-CCCcc--eeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhH
Confidence 466999999999999999888884 88886 9999999987533345566555433221 123567
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
.+.|+|||++|+..+..
T Consensus 168 ~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 168 EKLLSPGGIFVITSCNF 184 (227)
T ss_pred hhccCCCcEEEEEecCc
Confidence 78999999999987754
No 165
>PRK05785 hypothetical protein; Provisional
Probab=97.80 E-value=0.00018 Score=56.23 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=51.3
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
.|.++.. ++.. +++|+++|++++|++.|+++. .++++|+......+.+||+|++..+.++++
T Consensus 62 tG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 62 KGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 3666643 3333 379999999999999998531 135677765433457899999999887654
Q ss_pred ---HHHHhhCCCC
Q psy14971 77 ---KEILAQLKPG 86 (156)
Q Consensus 77 ---~~l~~~L~pG 86 (156)
.++.+.|||.
T Consensus 128 ~~l~e~~RvLkp~ 140 (226)
T PRK05785 128 KVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHhcCc
Confidence 3567899993
No 166
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.76 E-value=0.00026 Score=54.29 Aligned_cols=73 Identities=18% Similarity=0.051 Sum_probs=53.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~~L~pG 86 (156)
-.|+|+|+++..++.+++..++ .++ + |+....|..+... ...||.|+++.....++ +.+.+.++||
T Consensus 53 ~~VtAvD~s~~al~~l~~~a~~-~~l-~---i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 53 FDVTAVDISPVALEKLQRLAEE-EGL-D---IRTRVADLNDFDF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp -EEEEEESSHHHHHHHHHHHHH-TT--T---EEEEE-BGCCBS--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHhh-cCc-e---eEEEEecchhccc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 6899999999999999887776 365 4 8899999765333 36799999876554332 3567789999
Q ss_pred cEEEEEe
Q psy14971 87 GRLVFHK 93 (156)
Q Consensus 87 GrLv~~~ 93 (156)
|.+++..
T Consensus 127 G~~li~~ 133 (192)
T PF03848_consen 127 GYNLIVT 133 (192)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9988854
No 167
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.75 E-value=0.00023 Score=55.43 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh-----------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH----
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN-----------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~-----------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~---- 76 (156)
.+-.|+|+|+++..++.+.+..... ....+ |++.++|..+..+. .+.||.|+-.+....+|
T Consensus 58 ~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~---v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R 134 (218)
T PRK13255 58 QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE---ITIYCGDFFALTAADLADVDAVYDRAALIALPEEMR 134 (218)
T ss_pred CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCc---eEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHH
Confidence 3469999999999999875321100 01134 89999999875433 35799999777655554
Q ss_pred ----HHHHhhCCCCcEEEE
Q psy14971 77 ----KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~ 91 (156)
..+.+.|+|||++++
T Consensus 135 ~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 135 ERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred HHHHHHHHHHcCCCCeEEE
Confidence 356889999997444
No 168
>PHA03411 putative methyltransferase; Provisional
Probab=97.74 E-value=0.00011 Score=59.29 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=46.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
+|.+++.+....+..+|+++|+++++++.|++++ .+ ++++.+|+.+.. ....||.|+++.+..
T Consensus 75 sGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~---v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 75 IGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PE---AEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cC---CEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 3666654433333479999999999999999864 24 789999988643 345799999988764
No 169
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=0.00014 Score=55.33 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=69.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|+=++..+++.|..+|+-+|.....++.-++-.+. +|++| ++++++.+.+ ......||.|++-|-.+ .+-+..
T Consensus 60 GfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-L~L~n---v~v~~~R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~ 134 (184)
T PF02527_consen 60 GFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-LGLSN---VEVINGRAEE-PEYRESFDVVTARAVAPLDKLLELA 134 (184)
T ss_dssp TTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-HT-SS---EEEEES-HHH-TTTTT-EEEEEEESSSSHHHHHHHH
T ss_pred CChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-hCCCC---EEEEEeeecc-cccCCCccEEEeehhcCHHHHHHHH
Confidence 55667777888889999999999999999999988 69999 9999999876 33457899999977653 333556
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
...|++||++++.-+..
T Consensus 135 ~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 135 RPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp GGGEEEEEEEEEEESS-
T ss_pred HHhcCCCCEEEEEcCCC
Confidence 77899999999998753
No 170
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.73 E-value=0.00012 Score=56.57 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=56.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch----HH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----PK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----~~ 77 (156)
|||.+.+-.-+...+|+++|+++.-++.|++++++ .|+.++ |+++.||+.+.++.....|.|++.++=... -+
T Consensus 9 gyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~--i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI~~ILe 85 (205)
T PF04816_consen 9 GYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDR--IEVRLGDGLEVLKPGEDVDTIVIAGMGGELIIEILE 85 (205)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTT--EEEEE-SGGGG--GGG---EEEEEEE-HHHHHHHHH
T ss_pred hHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCccc--EEEEECCcccccCCCCCCCEEEEecCCHHHHHHHHH
Confidence 78887665666667899999999999999999999 487665 999999998877654447999887754322 22
Q ss_pred HHHhhCCCCcEEEE
Q psy14971 78 EILAQLKPGGRLVF 91 (156)
Q Consensus 78 ~l~~~L~pGGrLv~ 91 (156)
...+.++..-+||+
T Consensus 86 ~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 86 AGPEKLSSAKRLIL 99 (205)
T ss_dssp HTGGGGTT--EEEE
T ss_pred hhHHHhccCCeEEE
Confidence 22344444445555
No 171
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.0002 Score=61.20 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchHHHH---HhhCCC
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVPKEI---LAQLKP 85 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~~~l---~~~L~p 85 (156)
....+|+|+|++++.++.|++|++.+ +++| ++|+.+|+.+-.+. ...||.|++|-+.....+.+ ...++|
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n-~i~N---~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAAN-GIDN---VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHc-CCCc---EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999996 9999 99999998764333 24789999999888777544 345677
Q ss_pred CcEEEEEec
Q psy14971 86 GGRLVFHKG 94 (156)
Q Consensus 86 GGrLv~~~~ 94 (156)
-.++++.+.
T Consensus 389 ~~IvYVSCN 397 (432)
T COG2265 389 KRIVYVSCN 397 (432)
T ss_pred CcEEEEeCC
Confidence 777777654
No 172
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.70 E-value=0.0004 Score=53.43 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=44.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
..+|+++|+++++++.|++++.. .+. ++ +.+..+|... ..++||.|++.....+++
T Consensus 85 ~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~---i~~~~~d~~~---~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 85 GAKVVASDISPQMVEEARERAPE-AGLAGN---ITFEVGDLES---LLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred CCEEEEEECCHHHHHHHHHHHHh-cCCccC---cEEEEcCchh---ccCCcCEEEEcchhhcCC
Confidence 35799999999999999999987 365 35 9999999432 246799999988775543
No 173
>PHA03412 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00034 Score=55.30 Aligned_cols=62 Identities=8% Similarity=0.000 Sum_probs=44.6
Q ss_pred chHHHH-HHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVI-VGIK--GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~l-a~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.+++. ++.+ .+..+|+++|+++.+++.|++|+. + +.++.+|..... ....||.|+++.+..
T Consensus 61 G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~---~~~~~~D~~~~~-~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 61 GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------E---ATWINADALTTE-FDTLFDMAISNPPFG 125 (241)
T ss_pred HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------C---CEEEEcchhccc-ccCCccEEEECCCCC
Confidence 555543 3332 235799999999999999998753 3 678889986532 245899999987643
No 174
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.66 E-value=9e-05 Score=61.65 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------------CCCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------------EEGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------------~~~~fD 64 (156)
+|-+++... ....+|+|+|+++++++.|++|++.+ +++| ++|+.+++.+... ....+|
T Consensus 207 ~G~fsl~la--~~~~~V~gvE~~~~av~~A~~Na~~N-~i~n---~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d 280 (352)
T PF05958_consen 207 VGTFSLPLA--KKAKKVIGVEIVEEAVEDARENAKLN-GIDN---VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFD 280 (352)
T ss_dssp TTCCHHHHH--CCSSEEEEEES-HHHHHHHHHHHHHT-T--S---EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTES
T ss_pred CCHHHHHHH--hhCCeEEEeeCCHHHHHHHHHHHHHc-CCCc---ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCC
Confidence 355554322 22379999999999999999999996 8899 9999987643211 012589
Q ss_pred EEEEccCCCchHHHHHhhCCCCcEEEEEeccC
Q psy14971 65 IIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+|+++.+...+.+.+.+.++.=.++|.+.+.+
T Consensus 281 ~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP 312 (352)
T PF05958_consen 281 AVILDPPRAGLDEKVIELIKKLKRIVYVSCNP 312 (352)
T ss_dssp EEEE---TT-SCHHHHHHHHHSSEEEEEES-H
T ss_pred EEEEcCCCCCchHHHHHHHhcCCeEEEEECCH
Confidence 99999988776654444332224777776654
No 175
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.61 E-value=0.00019 Score=52.34 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCC-C----c---hH-------HH
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAAC-I----E---VP-------KE 78 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~-~----~---i~-------~~ 78 (156)
+|+|+||.++.++.++++++.. +..++ +++++.+-..... +.+++|+++.+-+. + . -+ +.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~--v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDR--VTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSG--EEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCc--EEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 6999999999999999999984 76444 9999965433111 12479999887542 1 1 12 35
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
.++.|+|||+|++.+
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 689999999999976
No 176
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.60 E-value=7.1e-05 Score=55.94 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=37.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--C-CcCEEEEcc
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--G-PYDIIHLGA 70 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~-~fD~I~i~~ 70 (156)
.+|+++|+++..++.|+.|++- +|+.++ |.+++||..+..... . .||+||++.
T Consensus 22 ~~Viaidid~~~~~~a~hNa~v-YGv~~~--I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 22 DRVIAIDIDPERLECAKHNAEV-YGVADN--IDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp -EEEEEES-HHHHHHHHHHHHH-TT-GGG--EEEEES-HHHHGGGB------SEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEeCCHHHHHhhccccccccEEEECC
Confidence 6899999999999999999999 697533 999999987654331 1 289999975
No 177
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.53 E-value=0.00038 Score=56.51 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=55.4
Q ss_pred CEEEEEeCCHHHHHHHHHHH--------------hhhc--------C-------CCCccceEEEEccCCCC-CCCCCCcC
Q psy14971 15 ALVLILNHYMKVKSKNQNNK--------------KLNI--------K-------QNRKSFKNVSVKDGSKG-HAEEGPYD 64 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l--------------~~~~--------g-------~~n~~~v~~~~gD~~~~-~~~~~~fD 64 (156)
-+|+|.|+++..++.|++.. ++.+ + +.+ .|+|...|..+. ++..+.||
T Consensus 148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~--~V~F~~~NL~~~~~~~~~~fD 225 (287)
T PRK10611 148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELAN--YVDFQQLNLLAKQWAVPGPFD 225 (287)
T ss_pred cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHc--cCEEEcccCCCCCCccCCCcc
Confidence 57999999999999999752 0101 0 112 289999998763 34357899
Q ss_pred EEEEccCCCc--------hHHHHHhhCCCCcEEEEEec
Q psy14971 65 IIHLGAACIE--------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~--------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+|++-..... +-..+.+.|+|||.|++-..
T Consensus 226 ~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 226 AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 9999765433 33467899999999887554
No 178
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.52 E-value=0.0002 Score=54.76 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=62.8
Q ss_pred chHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNVIVGIKG-ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~la~l~g-~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~-- 76 (156)
|+-++|+.+.. .+..++++|++++.+..+.++ | +.++++|..+++. ++.+||.|+++-+...+.
T Consensus 23 GdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----G------v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P 91 (193)
T PF07021_consen 23 GDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----G------VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP 91 (193)
T ss_pred CchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----C------CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH
Confidence 55566666654 457899999999987666533 4 6689999988764 367899999999988654
Q ss_pred H-HHHhhCCCCcEEEEEecc
Q psy14971 77 K-EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~-~l~~~L~pGGrLv~~~~~ 95 (156)
+ -+.+.|+-|.+.++.+..
T Consensus 92 ~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 92 DEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHhcCeEEEEecC
Confidence 3 356788999999988764
No 179
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.52 E-value=0.00021 Score=54.88 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=61.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC------Cc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC------IE 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~------~~ 74 (156)
+|.|++.|... ..+|+++|.+|..+..|++|+.-. |..| ++++.||+..-.. ..-|.|++..-- ..
T Consensus 43 sGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~-g~~n---~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~q 114 (252)
T COG4076 43 SGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP-GDVN---WEVVVGDARDYDF--ENADVVICEMLDTALIEEKQ 114 (252)
T ss_pred cchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC-CCcc---eEEEecccccccc--cccceeHHHHhhHHhhcccc
Confidence 47889887655 369999999999999999998764 7788 9999999986333 235888774421 12
Q ss_pred hH--HHHHhhCCCCcEEEE
Q psy14971 75 VP--KEILAQLKPGGRLVF 91 (156)
Q Consensus 75 i~--~~l~~~L~pGGrLv~ 91 (156)
+| ....+.|+..+.++=
T Consensus 115 VpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 115 VPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cHHHHHHHHHhhcCCcccc
Confidence 33 456677888887653
No 180
>KOG2904|consensus
Probab=97.51 E-value=0.0011 Score=53.43 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=64.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEE----EccCCCCCC-CCCCcCEEEEccCCC--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVS----VKDGSKGHA-EEGPYDIIHLGAACI-- 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~----~gD~~~~~~-~~~~fD~I~i~~~~~-- 73 (156)
|.+++ +++-++ .++|+|+|.++..+..|.+|.++ +++.++ +.++ .+|..+..+ ..+++|.++++.+.-
T Consensus 160 GaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr-~~l~g~--i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~ 235 (328)
T KOG2904|consen 160 GAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQR-LKLSGR--IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRK 235 (328)
T ss_pred cHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHH-HhhcCc--eEEEecccccccccccccccCceeEEecCCCcccc
Confidence 55554 344445 69999999999999999999999 587765 8877 455555443 247899999987531
Q ss_pred -chH-----------------------------HHHHhhCCCCcEEEEEec
Q psy14971 74 -EVP-----------------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -~i~-----------------------------~~l~~~L~pGGrLv~~~~ 94 (156)
+++ .-..+.|+|||.+.+-..
T Consensus 236 dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 236 DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 110 123588999999999877
No 181
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.48 E-value=0.00097 Score=54.48 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=58.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
||-++-+...|+ ..|+|+|-++-...+.+---+- +|.++ ..+....+.+.++..+.||.||+-+..-+..
T Consensus 127 GY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~-lg~~~---~~~~lplgvE~Lp~~~~FDtVF~MGVLYHrr~Pl~~ 201 (315)
T PF08003_consen 127 GYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF-LGQDP---PVFELPLGVEDLPNLGAFDTVFSMGVLYHRRSPLDH 201 (315)
T ss_pred cHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH-hCCCc---cEEEcCcchhhccccCCcCEEEEeeehhccCCHHHH
Confidence 666654444454 6899999998877664432222 45444 3344444555556577899999998875432
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|++||.||+-.
T Consensus 202 L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 202 LKQLKDSLRPGGELVLET 219 (315)
T ss_pred HHHHHHhhCCCCEEEEEE
Confidence 45678999999999864
No 182
>KOG3420|consensus
Probab=97.42 E-value=0.00031 Score=51.82 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=53.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.|++.+...+ ...|+|+|++|+.++.+.+|.+. +.+ + +.++++|..+..+..+-||..+++.+..
T Consensus 60 GmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeE-fEv-q---idlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 60 GMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEE-FEV-Q---IDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred hhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHH-hhh-h---hheeeeeccchhccCCeEeeEEecCCCC
Confidence 55664444444 47899999999999999999999 466 4 7899999988777778899999998654
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.40 E-value=0.0016 Score=53.75 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccC---CCCC-CCCCCcCEEEEccCCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDG---SKGH-AEEGPYDIIHLGAACI 73 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~---~~~~-~~~~~fD~I~i~~~~~ 73 (156)
++.+++++|+++..++.|++|++.+-++.++ |+++. .|. ..+. .....||.|+++-+..
T Consensus 137 ~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~--I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 137 YGWRFVGSDIDPQALASAQAIISANPGLNGA--IRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhccCCcCc--EEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 4579999999999999999999873035443 88764 332 2222 1246799999998754
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.37 E-value=0.0012 Score=51.49 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|+-+++.+|. |++++.+++ . ++ |+++.||..+.+|. +|++++..-++..++
T Consensus 112 G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~r---v~~~~gd~f~~~P~---~D~~~l~~vLh~~~d~~~~ 177 (241)
T PF00891_consen 112 GHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DR---VEFVPGDFFDPLPV---ADVYLLRHVLHDWSDEDCV 177 (241)
T ss_dssp SHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TT---EEEEES-TTTCCSS---ESEEEEESSGGGS-HHHHH
T ss_pred hHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cc---cccccccHHhhhcc---ccceeeehhhhhcchHHHH
Confidence 566655555678899999999 889998888 2 35 99999999865554 999999998886653
Q ss_pred ----HHHhhCCCC--cEEEEEec
Q psy14971 78 ----EILAQLKPG--GRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pG--GrLv~~~~ 94 (156)
.+.+.|+|| |+|++...
T Consensus 178 ~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 178 KILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCeEEEEee
Confidence 567889999 99999653
No 185
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.34 E-value=0.001 Score=54.07 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=47.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.++... +....+|+++|+|+++++.++++++. .+ .++ ++++.+|+.+.. ...||.|+.+.+..
T Consensus 48 G~LT~~L--l~~~~~V~avEiD~~li~~l~~~~~~-~~~~~~---v~ii~~Dal~~~--~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 48 GNLTEKL--LQLAKKVIAIEIDPRMVAELKKRFQN-SPLASK---LEVIEGDALKTE--FPYFDVCVANVPYQ 112 (294)
T ss_pred HHHHHHH--HHhCCcEEEEECCHHHHHHHHHHHHh-cCCCCc---EEEEECCHhhhc--ccccCEEEecCCcc
Confidence 5565432 22246899999999999999999987 35 356 999999997632 24689998876653
No 186
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.31 E-value=0.00066 Score=52.93 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh--h---------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKL--N---------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~--~---------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----- 76 (156)
+-.|+|+|+++..++.+.+.... . ....+ |++.+||..+..+. .++||+|+=-++.-.+|
T Consensus 59 G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~---i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~ 135 (218)
T PF05724_consen 59 GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR---ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRE 135 (218)
T ss_dssp TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS---EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHH
T ss_pred CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc---eEEEEcccccCChhhcCCceEEEEecccccCCHHHHH
Confidence 46999999999999998432211 0 01234 89999999874443 35899999888776665
Q ss_pred ---HHHHhhCCCCcEE
Q psy14971 77 ---KEILAQLKPGGRL 89 (156)
Q Consensus 77 ---~~l~~~L~pGGrL 89 (156)
+.+.++|+|||++
T Consensus 136 ~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 136 RYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHhCCCCcE
Confidence 3567899999993
No 187
>KOG1499|consensus
Probab=97.28 E-value=0.00095 Score=55.22 Aligned_cols=86 Identities=16% Similarity=0.020 Sum_probs=64.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----h
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-----V 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----i 75 (156)
+|.|++.|...|+ .+|+|+|-+ ++++.|++.++.+ ++.+. |+++.|...+..-+....|.|++...-.. +
T Consensus 71 tGILS~F~akAGA-~~V~aVe~S-~ia~~a~~iv~~N-~~~~i--i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsM 145 (346)
T KOG1499|consen 71 TGILSMFAAKAGA-RKVYAVEAS-SIADFARKIVKDN-GLEDV--ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESM 145 (346)
T ss_pred ccHHHHHHHHhCc-ceEEEEech-HHHHHHHHHHHhc-Cccce--EEEeecceEEEecCccceeEEeehhhhHHHHHhhh
Confidence 5899999999884 899999988 5669999999886 77665 89999998764222567999999654322 2
Q ss_pred HHHH----HhhCCCCcEEEE
Q psy14971 76 PKEI----LAQLKPGGRLVF 91 (156)
Q Consensus 76 ~~~l----~~~L~pGGrLv~ 91 (156)
.+.. =+.|+|||.++=
T Consensus 146 ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 146 LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhhhhhhhccCCCceEcc
Confidence 2222 257999998753
No 188
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0011 Score=55.58 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------hH-------HHHHh
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-------VP-------KEILA 81 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-------i~-------~~l~~ 81 (156)
.++++|+|+.+++.|+.|.+++ |+... |+|.++|+....+...++|+|+++.+.-. +. ..+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~A-Gv~d~--I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAA-GVGDL--IEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhc-CCCce--EEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 4779999999999999999995 98654 99999999864443378999999986531 11 23446
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.++--++.|+...
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 6666667776543
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.25 E-value=0.00043 Score=56.41 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=51.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CC-CCCcCEEEEccCCCc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AE-EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~-~~~fD~I~i~~~~~~ 74 (156)
|+...++..+++.++|+|+|+|+++++.|++++.. .++ ++++++|..+.. +. ..++|.|+++-+++.
T Consensus 32 GhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~r---i~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 32 GHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGR---FTLVHGNFSNLKEVLAEGLGKVDGILLDLGVSS 102 (296)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCc---EEEEeCCHHHHHHHHHcCCCccCEEEECCCccc
Confidence 34446777777789999999999999999998864 246 999999986521 11 127999999987753
No 190
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.25 E-value=0.0014 Score=50.37 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=48.1
Q ss_pred CEEEEEeCCHHHHHHHHHHH--------------hhhc----C--C-------CCccceEEEEccCCCCCCCCCCcCEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNK--------------KLNI----K--Q-------NRKSFKNVSVKDGSKGHAEEGPYDIIH 67 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l--------------~~~~----g--~-------~n~~~v~~~~gD~~~~~~~~~~fD~I~ 67 (156)
-+|+|.|+|+..++.|++-. ++.+ + . ++ |+|...|..+..+..++||+|+
T Consensus 65 ~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~---V~F~~~NL~~~~~~~~~fD~I~ 141 (196)
T PF01739_consen 65 FRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKM---VRFRRHNLLDPDPPFGRFDLIF 141 (196)
T ss_dssp EEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTT---EEEEE--TT-S------EEEEE
T ss_pred eEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCc---eEEEecccCCCCcccCCccEEE
Confidence 48999999999999998431 1111 1 0 23 9999999887445568899999
Q ss_pred EccCCC--------chHHHHHhhCCCCcEEEEEec
Q psy14971 68 LGAACI--------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 68 i~~~~~--------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
|-...- .+-+.+.+.|+|||.|++-..
T Consensus 142 CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 142 CRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 977653 233567899999999999654
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.22 E-value=0.0011 Score=57.04 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=55.9
Q ss_pred CchHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC----C
Q psy14971 1 MGDLNVIVGIK----GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA----C 72 (156)
Q Consensus 1 ~G~la~la~l~----g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~----~ 72 (156)
.|-|+..|... +...+|+|||.++......++.++.+ +.+++ |+++.+|..+. ....+.|+|++--. .
T Consensus 197 rGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~w~~~--V~vi~~d~r~v-~lpekvDIIVSElLGsfg~ 272 (448)
T PF05185_consen 197 RGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-GWGDK--VTVIHGDMREV-ELPEKVDIIVSELLGSFGD 272 (448)
T ss_dssp TSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-TTTTT--EEEEES-TTTS-CHSS-EEEEEE---BTTBT
T ss_pred ccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-CCCCe--EEEEeCcccCC-CCCCceeEEEEeccCCccc
Confidence 36676544332 33479999999998887777776664 66444 99999999874 33358999999532 2
Q ss_pred Cc-hHH---HHHhhCCCCcEEE
Q psy14971 73 IE-VPK---EILAQLKPGGRLV 90 (156)
Q Consensus 73 ~~-i~~---~l~~~L~pGGrLv 90 (156)
.+ +|+ ...+.|||||+++
T Consensus 273 nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 273 NELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTSHHHHHHHGGGGEEEEEEEE
T ss_pred cccCHHHHHHHHhhcCCCCEEe
Confidence 23 333 3356899998764
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.15 E-value=0.0045 Score=55.95 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-------hHH---H---H
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE-------VPK---E---I 79 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~-------i~~---~---l 79 (156)
.+++|+|+++++++.|++|+..+ |+.+. +.+..+|..+.... .+.||.|+++.+.-. +.+ . .
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~-g~~~~--i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRA-GVAEL--ITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHc-CCCcc--eEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 47999999999999999999994 88654 89999998764322 246999999976421 111 1 2
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
++.+.+|+++++..+..
T Consensus 334 lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 334 LKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHhCCCCeEEEEeCCH
Confidence 34445999999887643
No 193
>KOG2730|consensus
Probab=97.11 E-value=0.00031 Score=54.99 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAA 71 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~ 71 (156)
..|++||+||..+..|++|++- +|++++ |+|++||..+.... ..-+|++|.+.+
T Consensus 117 ~~VisIdiDPikIa~AkhNaei-YGI~~r--ItFI~GD~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 117 PYVIAIDIDPVKIACARHNAEV-YGVPDR--ITFICGDFLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred CeEEEEeccHHHHHHHhcccee-ecCCce--eEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence 5899999999999999999999 699877 99999998653221 223678887654
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.09 E-value=0.0032 Score=54.86 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=68.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~i---- 75 (156)
|...+-.+...|...++|+|++...+..|.+...+ .++.| +.++.+|+... .-...++|.|++..+-+..
T Consensus 359 G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-~~l~N---~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh 434 (506)
T PRK01544 359 GEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-QNITN---FLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ 434 (506)
T ss_pred hHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-cCCCe---EEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC
Confidence 44444344556789999999999999999999888 48889 99998886321 1234679999999987632
Q ss_pred ----------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ----------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ----------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||.+.+....
T Consensus 435 ~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 435 KKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 13678999999999987653
No 195
>PRK10742 putative methyltransferase; Provisional
Probab=97.09 E-value=0.0016 Score=51.78 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=53.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-----cCC---CCccceEEEEccCCCCCCC-CCCcCEEEEccC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-----IKQ---NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAA 71 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-----~g~---~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~ 71 (156)
+|-.++.+...| ++|+.+|.++.+....++++++. ++. .+ ++++++|+.+.+.. ...||+||++-+
T Consensus 99 lG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r---i~l~~~da~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 99 LGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER---LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred ccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhce---EEEEeCcHHHHHhhCCCCCcEEEECCC
Confidence 466777776665 67999999999999999999882 021 35 99999998764432 236999999998
Q ss_pred CCc
Q psy14971 72 CIE 74 (156)
Q Consensus 72 ~~~ 74 (156)
.++
T Consensus 174 fp~ 176 (250)
T PRK10742 174 FPH 176 (250)
T ss_pred CCC
Confidence 764
No 196
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.05 E-value=0.0021 Score=53.26 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=54.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cC--CCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DG--SKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~--~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+.+| ++|+++|++++-++.|++- |.+. ++.+ |. .+... ..||.|+.+.+ ..-.+
T Consensus 179 Gh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l-----GAd~-----~i~~~~~~~~~~~~--~~~d~ii~tv~-~~~~~ 243 (339)
T COG1064 179 GHMAVQYAKAMG--AEVIAITRSEEKLELAKKL-----GADH-----VINSSDSDALEAVK--EIADAIIDTVG-PATLE 243 (339)
T ss_pred HHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh-----CCcE-----EEEcCCchhhHHhH--hhCcEEEECCC-hhhHH
Confidence 45555 356676 8999999999999988854 4322 2222 21 11112 23999999999 76667
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
..++.|++||++++.=
T Consensus 244 ~~l~~l~~~G~~v~vG 259 (339)
T COG1064 244 PSLKALRRGGTLVLVG 259 (339)
T ss_pred HHHHHHhcCCEEEEEC
Confidence 8899999999999953
No 197
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.05 E-value=0.011 Score=46.83 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc--hH---HH
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE--VP---KE 78 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~--i~---~~ 78 (156)
+.+.+.+...+|+-+|+|+.+++.-++..++ .|+ + |+.++.|...++|+ .+.||++|.+.+-.- +. ..
T Consensus 59 lA~al~~~~~~I~VvDiDeRll~fI~~~a~~-~gl-~---i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsR 133 (243)
T PF01861_consen 59 LALALTGLPKRITVVDIDERLLDFINRVAEE-EGL-P---IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSR 133 (243)
T ss_dssp HHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-HT------EEEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHH
T ss_pred HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-cCC-c---eEEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHH
Confidence 3345667779999999999999999999998 587 5 99999999998887 488999999876542 11 23
Q ss_pred HHhhCCC-CcEEEEEeccC
Q psy14971 79 ILAQLKP-GGRLVFHKGLH 96 (156)
Q Consensus 79 l~~~L~p-GGrLv~~~~~~ 96 (156)
-.+.||. ||..++..+..
T Consensus 134 gi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 134 GIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp HHHTB-STT-EEEEEE-TT
T ss_pred HHHHhCCCCceEEEEEecC
Confidence 3567776 44666666544
No 198
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.00 E-value=0.0018 Score=48.73 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=57.8
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-----CCCCCcCEEEEccCCCchH----
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-----AEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~i~---- 76 (156)
++++.+.+ ..++++|.+++.+..-.+... . +.++.||+...- .....||.|+++-+...+|
T Consensus 66 IL~~gv~~-~~L~~iE~~~dF~~~L~~~~p------~---~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~ 135 (194)
T COG3963 66 ILSRGVRP-ESLTAIEYSPDFVCHLNQLYP------G---VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRR 135 (194)
T ss_pred HHhcCCCc-cceEEEEeCHHHHHHHHHhCC------C---ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHH
Confidence 45555544 789999999999987776543 3 668889986421 2245699999999887766
Q ss_pred ----HHHHhhCCCCcEEEEEe
Q psy14971 77 ----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~ 93 (156)
+.+...|.+||-+|-..
T Consensus 136 iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 136 IAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHHHHHhcCCCCeEEEEE
Confidence 45678899999888754
No 199
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.98 E-value=0.0066 Score=48.88 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCEEEEEeCCHHHHHHHHHH------H---------hhhc--CCCC-c-------cceEEEEccCCCCCCCCCCcCEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNN------K---------KLNI--KQNR-K-------SFKNVSVKDGSKGHAEEGPYDIIHL 68 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~------l---------~~~~--g~~n-~-------~~v~~~~gD~~~~~~~~~~fD~I~i 68 (156)
.-+|+|.|+|...++.|++- . ++.+ +-+. . +-|+|...|.....+-.+.||.|||
T Consensus 129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC 208 (268)
T COG1352 129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC 208 (268)
T ss_pred ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence 46899999999999999832 1 1110 0000 0 1288888888775544578999999
Q ss_pred ccCCC--------chHHHHHhhCCCCcEEEEEec
Q psy14971 69 GAACI--------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 69 ~~~~~--------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
-..+- .+-..+.++|+|||.|++-..
T Consensus 209 RNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 209 RNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 66542 344567899999999998654
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0032 Score=49.12 Aligned_cols=88 Identities=20% Similarity=0.147 Sum_probs=69.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCC-cCEEEEccCCC--chHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGP-YDIIHLGAACI--EVPKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~-fD~I~i~~~~~--~i~~~ 78 (156)
|+=++..+++.|..+|+-+|.....+..-++-... ++++| ++++++.+.+-.++ .+ ||.|.+-|-.+ .+.+-
T Consensus 79 GfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-L~L~n---v~i~~~RaE~~~~~-~~~~D~vtsRAva~L~~l~e~ 153 (215)
T COG0357 79 GFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-LGLEN---VEIVHGRAEEFGQE-KKQYDVVTSRAVASLNVLLEL 153 (215)
T ss_pred CCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-hCCCC---eEEehhhHhhcccc-cccCcEEEeehccchHHHHHH
Confidence 44455555788888899999999999999999888 79999 99999998764432 34 99999976543 45566
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
....|++||.+++..+
T Consensus 154 ~~pllk~~g~~~~~k~ 169 (215)
T COG0357 154 CLPLLKVGGGFLAYKG 169 (215)
T ss_pred HHHhcccCCcchhhhH
Confidence 6789999999877654
No 201
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.93 E-value=0.0092 Score=47.41 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=46.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.++...... ..+|+++|+++.+++.+++++.. .+| ++++++|+.+.. ...||.|+.+-+..
T Consensus 41 G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~---v~ii~~D~~~~~--~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 41 GALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGN---VEIIEGDALKVD--LPEFNKVVSNLPYQ 102 (258)
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCC---EEEEEeccccCC--chhceEEEEcCCcc
Confidence 6676543333 36999999999999999998864 257 999999997632 23589998876654
No 202
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.91 E-value=0.0084 Score=47.37 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcC---EEEEccCCCchHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYD---IIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD---~I~i~~~~~~i~~~ 78 (156)
|.++......+ ..|+++|+++++++.+++++.. ..+ ++++.+|+.+.... .|| .|+.+-+..--.+.
T Consensus 41 G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~---v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~i 110 (253)
T TIGR00755 41 GALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YER---LEVIEGDALKVDLP--DFPKQLKVVSNLPYNISSPL 110 (253)
T ss_pred CHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCc---EEEEECchhcCChh--HcCCcceEEEcCChhhHHHH
Confidence 66665433333 4699999999999999988754 246 99999998764332 466 66665554322334
Q ss_pred HHhhC-CCCcEEEE
Q psy14971 79 ILAQL-KPGGRLVF 91 (156)
Q Consensus 79 l~~~L-~pGGrLv~ 91 (156)
+.+.| .+|+...+
T Consensus 111 l~~ll~~~~~~~~~ 124 (253)
T TIGR00755 111 IFKLLEKPKFRLAV 124 (253)
T ss_pred HHHHhccCCCceEE
Confidence 44555 45554433
No 203
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.88 E-value=0.0058 Score=46.21 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=50.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchH---HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVP---KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~---~~l~~~L~pGGr 88 (156)
...++++|+++++++.|++ + + ++++.+|+.+..+ ...+||.|++..+.++++ ..+.+.++++|.
T Consensus 36 ~~~~~giD~s~~~i~~a~~---~-----~---~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 36 QVRGYGIEIDQDGVLACVA---R-----G---VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCcEEEEeCCHHHHHHHHH---c-----C---CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 3578999999999988753 1 3 6778888765332 246799999999887664 345566677887
Q ss_pred EEEEec
Q psy14971 89 LVFHKG 94 (156)
Q Consensus 89 Lv~~~~ 94 (156)
+++.+.
T Consensus 105 ~ii~~p 110 (194)
T TIGR02081 105 AIVSFP 110 (194)
T ss_pred EEEEcC
Confidence 776653
No 204
>KOG1500|consensus
Probab=96.87 E-value=0.0044 Score=51.60 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=64.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
.|.|++.|...|. .+|+++|-+ +|++.||+-.+.+ .+..+ |+++.|...+.- -....|+|+....-- .+
T Consensus 188 SGILS~FAaqAGA-~~vYAvEAS-~MAqyA~~Lv~~N-~~~~r--ItVI~GKiEdie-LPEk~DviISEPMG~mL~NERM 261 (517)
T KOG1500|consen 188 SGILSFFAAQAGA-KKVYAVEAS-EMAQYARKLVASN-NLADR--ITVIPGKIEDIE-LPEKVDVIISEPMGYMLVNERM 261 (517)
T ss_pred ccHHHHHHHHhCc-ceEEEEehh-HHHHHHHHHHhcC-Cccce--EEEccCcccccc-CchhccEEEeccchhhhhhHHH
Confidence 4889999888886 899999986 8999999988875 44333 999999987632 235689999865432 22
Q ss_pred HHH---HHhhCCCCcEEEEEec
Q psy14971 76 PKE---ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~---l~~~L~pGGrLv~~~~ 94 (156)
.+. ..+.|+|.|.|+=.++
T Consensus 262 LEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 262 LESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred HHHHHHHHhhcCCCCcccCccc
Confidence 222 3578999999976555
No 205
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0071 Score=47.28 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=56.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
+||.+-+-.-++..++++.|+++..++.|.+|++++ ++..+ +++..||+...+..+..+|.|++.++-
T Consensus 28 AYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-~l~~~--i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 28 AYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-NLSER--IDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred hHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-CCcce--EEEeccCCccccCccCCcCEEEEeCCc
Confidence 567766656677789999999999999999999985 65443 999999998877766789999998754
No 206
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.79 E-value=0.0079 Score=50.56 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHH--hhhcCC---CCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHH----------
Q psy14971 14 RALVLILNHYMKVKSKNQNNK--KLNIKQ---NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPK---------- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l--~~~~g~---~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~---------- 77 (156)
..+|+-+|.||+|++.++++. +. ++. ++ ++++++..|+..-+.. ...||.|+++-.-+.-|.
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~-~N~~sf~d-pRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRA-LNQGSFSD-PRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhh-hccCCccC-CeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 689999999999999999554 33 221 11 1299999998764333 347999999987665441
Q ss_pred -HHHhhCCCCcEEEEEeccC
Q psy14971 78 -EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 -~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.|+++|++|+-.+..
T Consensus 391 ~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 391 RLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHHhcCcCceEEEecCCC
Confidence 3568999999999987643
No 207
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.79 E-value=0.0023 Score=52.37 Aligned_cols=66 Identities=9% Similarity=-0.029 Sum_probs=50.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CC--CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HA--EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~--~~~~fD~I~i~~~~~ 73 (156)
|+-..++..+++ ++|+|+|.|++.++.|+++++. ++ ++ +++++++-.+. +. ...++|.|+.+-+++
T Consensus 33 GHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~-~~-~R---~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 33 GHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD-FE-GR---VVLIHDNFANFFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh-cC-Cc---EEEEeCCHHHHHHHHHhcCCCcccEEEEeccCC
Confidence 455567777765 9999999999999999999987 43 45 99999887542 11 124699999987664
No 208
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.77 E-value=0.0043 Score=48.77 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=51.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHH-HHHHHh--hhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSK-NQNNKK--LNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~-A~~~l~--~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
.|.++..+...| ..+|+|+|+++.++.. .+++.+ . ++..| ++. -+..+.+++...+|++|++... +.+
T Consensus 86 tG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~-~~~~n---i~~--~~~~~~~~d~~~~DvsfiS~~~--~l~ 156 (228)
T TIGR00478 86 TGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKV-LERTN---IRY--VTPADIFPDFATFDVSFISLIS--ILP 156 (228)
T ss_pred CCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeE-eecCC---ccc--CCHhHcCCCceeeeEEEeehHh--HHH
Confidence 477776544444 3799999999977654 443322 1 23345 441 1211222333568887776554 566
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|++ |.+++.+.+
T Consensus 157 ~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 157 ELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred HHHHHhCc-CeEEEEcCh
Confidence 78899999 988887653
No 209
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.012 Score=45.65 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=61.1
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH----H
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP----K 77 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~----~ 77 (156)
+.++.+++ .|.|+++|.++.....--.-+++ -+| +-.+.+|+..+..- -...|+|+.+-+-++=. .
T Consensus 92 SHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~N---i~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~ 164 (231)
T COG1889 92 SHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPN---IIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILAD 164 (231)
T ss_pred hHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCC---ceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHH
Confidence 46788888 79999999999877655554443 147 89999999764321 24589999999987533 3
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
+...-||+||.+++.+.
T Consensus 165 Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 165 NAEFFLKKGGYVVIAIK 181 (231)
T ss_pred HHHHhcccCCeEEEEEE
Confidence 45567999998888764
No 210
>KOG1541|consensus
Probab=96.66 E-value=0.011 Score=46.60 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC---------chHH-----
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---------EVPK----- 77 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---------~i~~----- 77 (156)
++-..+++|+++.|++.|.+ +. +. -.++.+|.-+++|. .+.||.+++-.++. +.|.
T Consensus 71 ~Gh~wiGvDiSpsML~~a~~--~e-~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~ 141 (270)
T KOG1541|consen 71 SGHQWIGVDISPSMLEQAVE--RE-LE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLR 141 (270)
T ss_pred CCceEEeecCCHHHHHHHHH--hh-hh------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHH
Confidence 34568999999999999998 33 22 24788898888765 58899999876653 2332
Q ss_pred ---HHHhhCCCCcEEEEEeccC
Q psy14971 78 ---EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~~~~~ 96 (156)
.+...|+.|+|-|+-.-+.
T Consensus 142 FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 142 FFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred HhhhhhhhhccCceeEEEeccc
Confidence 4678999999999976543
No 211
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.56 E-value=0.012 Score=47.20 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=43.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
.|.++......+ .+|+++|++++|++.+++++.. ++ ++++.+|+.+...+.-.+|.|+.+-+.
T Consensus 53 ~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~---v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 53 LGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DN---LTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred ccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----Cc---eEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 366775433333 4999999999999999987742 46 999999987643221115778776554
No 212
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.43 E-value=0.014 Score=41.52 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=40.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS 54 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~ 54 (156)
|+.++.....++.++|+++|.++++.+.+++|++.+ ++.| ++++.....
T Consensus 10 G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-~~~~---v~~~~~al~ 58 (143)
T TIGR01444 10 GDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-NLPN---VVLLNAAVG 58 (143)
T ss_pred cHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-CCCc---EEEEEeeee
Confidence 778877666677789999999999999999999884 7777 888886654
No 213
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.32 E-value=0.015 Score=48.15 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCc------cc-eEEEEccCCCC-----CCC-CCCcCEEEEccCCCch-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRK------SF-KNVSVKDGSKG-----HAE-EGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~------~~-v~~~~gD~~~~-----~~~-~~~fD~I~i~~~~~~i----- 75 (156)
-++++++|++++.++.|+++.+.. .-.+. .+ ..++.+|+... +.. ..+||+|=+-.+.+-.
T Consensus 85 i~~~vg~Dis~~si~ea~~Ry~~~-~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~ 163 (331)
T PF03291_consen 85 IKHYVGIDISEESIEEARERYKQL-KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEE 163 (331)
T ss_dssp -SEEEEEES-HHHHHHHHHHHHHH-HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHh-ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHH
Confidence 489999999999999999999431 11000 01 67899998642 222 2589999998877632
Q ss_pred -----HHHHHhhCCCCcEEEEEeccC
Q psy14971 76 -----PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -----~~~l~~~L~pGGrLv~~~~~~ 96 (156)
...+.+.|+|||+++..+...
T Consensus 164 ~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 164 KARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 346789999999999988753
No 214
>KOG1596|consensus
Probab=96.31 E-value=0.013 Score=46.78 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCEEEEEeCCHH----HHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchHH
Q psy14971 5 NVIVGIKGERALVLILNHYMK----VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~----~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~~ 77 (156)
+..+.++||.+.|+++|.++. ++.+|+++ .| |..+.-|+..+..- -+..|+||.+-+-+....
T Consensus 172 SHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tN---iiPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq~R 241 (317)
T KOG1596|consen 172 SHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TN---IIPIIEDARHPAKYRMLVGMVDVIFADVAQPDQAR 241 (317)
T ss_pred ehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CC---ceeeeccCCCchheeeeeeeEEEEeccCCCchhhh
Confidence 457789999999999998863 44444322 46 88888898754321 246799999988875443
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
+....||+||-+|+.+.
T Consensus 242 ivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 242 IVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred hhhhhhhhhhccCCeEEEEEe
Confidence 33567999999999764
No 215
>KOG1975|consensus
Probab=96.15 E-value=0.019 Score=47.53 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCC-CCccc-eEEEEccCCCC-----CCCCCC-cCEEEEccCCCc----------hH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSF-KNVSVKDGSKG-----HAEEGP-YDIIHLGAACIE----------VP 76 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~-v~~~~gD~~~~-----~~~~~~-fD~I~i~~~~~~----------i~ 76 (156)
+.++++||.+--++.|+++.+...+. .+..| +.|+.||+... ++...| ||+|=+-.+++- ..
T Consensus 141 ~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l 220 (389)
T KOG1975|consen 141 GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIAL 220 (389)
T ss_pred cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHH
Confidence 78999999999999999998764111 10001 78999998642 223345 999988776652 12
Q ss_pred HHHHhhCCCCcEEEEEeccC
Q psy14971 77 KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~~ 96 (156)
....+.|+|||.++..+++.
T Consensus 221 ~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 221 RNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHhhcCCCcEEEEecCcH
Confidence 35678999999999987653
No 216
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.07 E-value=0.024 Score=43.90 Aligned_cols=81 Identities=11% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCC-----CC---CCCCcCEEEEccCCC--ch
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKG-----HA---EEGPYDIIHLGAACI--EV 75 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~-----~~---~~~~fD~I~i~~~~~--~i 75 (156)
|.+++++.++|+++|++.....+. .++.+ .. ++ |+++.||..+. .. .......|+.++.-. ++
T Consensus 53 ml~~~~~~~~VigiDIdir~~~~~--a~e~h-p~~~r---I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hv 126 (206)
T PF04989_consen 53 MLELLGGKGKVIGIDIDIRPHNRK--AIESH-PMSPR---ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHV 126 (206)
T ss_dssp HHHHTT---EEEEEES-GTT--S---GGGG-----TT---EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSH
T ss_pred HHHHhCCCceEEEEeCCcchhchH--HHhhc-cccCc---eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHH
Confidence 456777889999999975543322 22221 12 34 99999998652 11 123456888888732 33
Q ss_pred H---HHHHhhCCCCcEEEEEe
Q psy14971 76 P---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~---~~l~~~L~pGGrLv~~~ 93 (156)
. +.+...+++|+.+|+--
T Consensus 127 l~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 127 LAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHhCccCCCCCEEEEEe
Confidence 3 45678999999999843
No 217
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.04 E-value=0.011 Score=46.09 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH--------HHHhhCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--------EILAQLKP 85 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--------~l~~~L~p 85 (156)
..+|.-+|..+.+++.|++.+... + ... .++.+.-..+-.|+...||+|.+--...++.+ .+.+.|+|
T Consensus 78 f~~VDlVEp~~~Fl~~a~~~l~~~-~-~~v--~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 78 FDEVDLVEPVEKFLEQAKEYLGKD-N-PRV--GEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp -SEEEEEES-HHHHHHHHHHTCCG-G-CCE--EEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred cCEeEEeccCHHHHHHHHHHhccc-C-CCc--ceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 468999999999999999887651 1 231 34444333332344578999999888877653 45788999
Q ss_pred CcEEEEEe
Q psy14971 86 GGRLVFHK 93 (156)
Q Consensus 86 GGrLv~~~ 93 (156)
+|.+|+=.
T Consensus 154 ~G~IvvKE 161 (218)
T PF05891_consen 154 NGVIVVKE 161 (218)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEe
Confidence 99999844
No 218
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.04 E-value=0.025 Score=39.38 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=56.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..| ++|+++|.+++..+.+++. |.+. ++..+-.+ .......+|.+|-..+...
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~-----Ga~~-----~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAKEL-----GADH-----VIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT-----TESE-----EEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh-----cccc-----cccccccccccccccccccccceEEEEecCcHH
Confidence 55565 467777 9999999999998888742 4221 22222111 0111247999999988777
Q ss_pred hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~~ 95 (156)
..+...+.|+++|++++.-..
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 777888999999999997654
No 219
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.02 E-value=0.07 Score=39.86 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC--C-CCccceEEEEccCCCCC----CCCCCcCEEEEccCCC-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK--Q-NRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACI- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g--~-~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~- 73 (156)
|-.++.+.......+|+..|.++ .++..+.|++.+ + . .+ +++..-|=.+.. .+..+||.|+..-.+-
T Consensus 57 Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N-~~~~~~~---v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 57 GLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN-GSLLDGR---VSVRPLDWGDELDSDLLEPHSFDVILASDVLYD 131 (173)
T ss_dssp SHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-
T ss_pred chhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc-ccccccc---ccCcEEEecCcccccccccccCCEEEEecccch
Confidence 66777766664458999999998 999999999875 3 2 33 777765522211 1235799888765442
Q ss_pred -----chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|+++|.+++....
T Consensus 132 ~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 132 EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 2335677899999886665543
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.99 E-value=0.016 Score=46.88 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch-------------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV------------- 75 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i------------- 75 (156)
....++|+|+++.++..|+.|+.-. +. .+ ..+..+|....... ...||.|+.+.+....
T Consensus 76 ~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~~---~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 76 KEINIYGIEIDPEAVALAKLNLLLH-GIDNSN---INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp CCEEEEEEES-HHHHHHHHHHHHHT-THHCBG---CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred ccceeEeecCcHHHHHHHHhhhhhh-cccccc---ccccccccccccccccccccccccCCCCccccccccccccccccc
Confidence 4579999999999999999998652 43 33 56889997653222 3689999998754321
Q ss_pred -----H---------HHHHhhCCCCcEEEEEec
Q psy14971 76 -----P---------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -----~---------~~l~~~L~pGGrLv~~~~ 94 (156)
+ ....+.|++||++++.+.
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 0 234789999999887754
No 221
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.94 E-value=0.085 Score=43.08 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=62.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCC-CCCcCEEEEccCCCchHH---------HHHhh
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAE-EGPYDIIHLGAACIEVPK---------EILAQ 82 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~-~~~fD~I~i~~~~~~i~~---------~l~~~ 82 (156)
.+|.-.|.++.-++..++.++. .|+.+. ++|.++|+.+. +.. ...++.+++++-..-.++ -+.+.
T Consensus 162 ~~i~LrDys~~Nv~~g~~li~~-~gL~~i--~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a 238 (311)
T PF12147_consen 162 DSILLRDYSPINVEKGRALIAE-RGLEDI--ARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARA 238 (311)
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-cCCccc--eEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHH
Confidence 5899999999999999999998 598882 39999999764 222 345899999987765553 24677
Q ss_pred CCCCcEEEEEeccCC
Q psy14971 83 LKPGGRLVFHKGLHN 97 (156)
Q Consensus 83 L~pGGrLv~~~~~~~ 97 (156)
|.|||.||..-.+.+
T Consensus 239 l~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 239 LEPGGYLIYTGQPWH 253 (311)
T ss_pred hCCCcEEEEcCCCCC
Confidence 999999999765443
No 222
>KOG2361|consensus
Probab=95.86 E-value=0.021 Score=45.37 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCCCCCCcCEEEEccCCCchH--------HHHHh
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHAEEGPYDIIHLGAACIEVP--------KEILA 81 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~~~~~fD~I~i~~~~~~i~--------~~l~~ 81 (156)
+-.|++.|.+|..++..+++-... -.+ +..-..|.. ....+.+++|.|.+-...+.++ +.+.+
T Consensus 97 ~l~v~acDfsp~Ai~~vk~~~~~~--e~~---~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ 171 (264)
T KOG2361|consen 97 RLKVYACDFSPRAIELVKKSSGYD--ESR---VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRT 171 (264)
T ss_pred CeEEEEcCCChHHHHHHHhccccc--hhh---hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHH
Confidence 368999999999999999886542 122 333333433 2234467899988877666554 46789
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
+|||||.|++-
T Consensus 172 llKPGG~llfr 182 (264)
T KOG2361|consen 172 LLKPGGSLLFR 182 (264)
T ss_pred HhCCCcEEEEe
Confidence 99999999995
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.043 Score=43.99 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=46.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~ 72 (156)
|.||. .++....+|+++|+|+.+++..++.+.. .+| ++++.||+...... ...+++|+.+-+.
T Consensus 42 GaLT~--~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~n---~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 42 GALTE--PLLERAARVTAIEIDRRLAEVLKERFAP---YDN---LTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CHHHH--HHHhhcCeEEEEEeCHHHHHHHHHhccc---ccc---eEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 55553 2333347899999999999999998864 257 99999999874332 2268999987665
No 224
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.018 Score=47.06 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=51.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CC--CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HA--EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~--~~~~fD~I~i~~~~~ 73 (156)
|+--.+...+++.++++++|.|++.++.|++.+.. ++ ++ +++++++-... +. ..+.+|.|+.+-+++
T Consensus 36 GHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-~~-~r---~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 36 GHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-FD-GR---VTLVHGNFANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-cC-Cc---EEEEeCcHHHHHHHHHhcCCCceeEEEEeccCC
Confidence 44556666777789999999999999999999988 45 46 99999875432 11 135789999987665
No 225
>KOG1709|consensus
Probab=95.78 E-value=0.091 Score=41.36 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=60.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc---cCCCCCCCCCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK---DGSKGHAEEGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g---D~~~~~~~~~~fD~I~i~~~~~---- 73 (156)
||...-..+...| -+-+-||-+|+.+++-|++--. .-+| |.++.| |....+++ +.||.|+-+.=.+
T Consensus 112 MgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~--ek~n---Viil~g~WeDvl~~L~d-~~FDGI~yDTy~e~yEd 184 (271)
T KOG1709|consen 112 MGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR--EKEN---VIILEGRWEDVLNTLPD-KHFDGIYYDTYSELYED 184 (271)
T ss_pred hHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc--cccc---eEEEecchHhhhccccc-cCcceeEeechhhHHHH
Confidence 4444433344444 4566799999999988877543 3367 888887 44433444 5599999987543
Q ss_pred --chHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 --EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 --~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+..+.+.++|||+|.+-+..+..
T Consensus 185 l~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 185 LRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcc
Confidence 33456789999999999987754
No 226
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.77 E-value=0.054 Score=42.25 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccCCCchHHHHHhh--CCCCcEE
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAACIEVPKEILAQ--LKPGGRL 89 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~~~~i~~~l~~~--L~pGGrL 89 (156)
-+|+++.|-.+++-+...++.+.. .+..+. ++|+.||..+ ..+.....|++++++-..+.-..+++. +.|.|-+
T Consensus 68 TgGR~vCIvp~~~~~~~~~~~l~~-~~~~~~--vEfvvg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaV 144 (218)
T PF07279_consen 68 TGGRHVCIVPDEQSLSEYKKALGE-AGLSDV--VEFVVGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAV 144 (218)
T ss_pred cCCeEEEEcCChhhHHHHHHHHhh-cccccc--ceEEecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceE
Confidence 359999999999988888888877 476553 7999998643 445556799999999987777445444 4455654
Q ss_pred EE
Q psy14971 90 VF 91 (156)
Q Consensus 90 v~ 91 (156)
|+
T Consensus 145 VV 146 (218)
T PF07279_consen 145 VV 146 (218)
T ss_pred EE
Confidence 44
No 227
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.75 E-value=0.013 Score=48.62 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=55.4
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCC---CCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSK---GHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~---~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++++ +++.|. .+|+.+|++++.++.|++..... -..| ... +... .......+|.+|-..+....-
T Consensus 181 GLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~-~~~~------~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~ 252 (350)
T COG1063 181 GLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD-VVVN------PSEDDAGAEILELTGGRGADVVIEAVGSPPAL 252 (350)
T ss_pred HHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe-Eeec------CccccHHHHHHHHhCCCCCCEEEECCCCHHHH
Confidence 556544 555554 89999999999999999865321 1111 111 1100 111123599999988855555
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
....+.+++||++++.-.
T Consensus 253 ~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 253 DQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 678899999999999644
No 228
>KOG2198|consensus
Probab=95.70 E-value=0.081 Score=44.34 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-------CC--CCCCcCEEEEccCCCch------HH-
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-------HA--EEGPYDIIHLGAACIEV------PK- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-------~~--~~~~fD~I~i~~~~~~i------~~- 77 (156)
.|.|++=|.++..+..-+..+.+ +...+ +.+...|+... +. +.-.||+|+++.+|+.- +.
T Consensus 183 ~g~vvaND~d~~R~~~L~~q~~~-l~~~~---~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i 258 (375)
T KOG2198|consen 183 RGYVVANDVDPKRLNMLVHQLKR-LPSPN---LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNI 258 (375)
T ss_pred CCeeEecccCHHHHHHHHHHHhc-cCCcc---eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchH
Confidence 47999999999999999888866 34444 55555555321 11 22469999999988631 10
Q ss_pred ----------------------HHHhhCCCCcEEEEEecc
Q psy14971 78 ----------------------EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ----------------------~l~~~L~pGGrLv~~~~~ 95 (156)
.-+++||+||+||..+++
T Consensus 259 ~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 259 WKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 126789999999998764
No 229
>KOG1562|consensus
Probab=95.60 E-value=0.019 Score=46.84 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCchH----------HHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEVP----------KEIL 80 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i~----------~~l~ 80 (156)
-+.+.-+|++..+++..++-+... -|+++ +.|.+..||+..-+.. ..+||+|+++.+-+..| ..+.
T Consensus 145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~-~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~ 223 (337)
T KOG1562|consen 145 VENILLCEIDENVIESSKQYLPTLACGYEG-KKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVL 223 (337)
T ss_pred ccceeeehhhHHHHHHHHHHhHHHhcccCC-CceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHH
Confidence 367889999999999999998763 23321 1299999998653322 57899999999877665 2467
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.||++|.++..
T Consensus 224 ~aLk~dgv~~~q 235 (337)
T KOG1562|consen 224 DALKGDGVVCTQ 235 (337)
T ss_pred HhhCCCcEEEEe
Confidence 899999999886
No 230
>PRK04148 hypothetical protein; Provisional
Probab=95.48 E-value=0.11 Score=37.71 Aligned_cols=67 Identities=18% Similarity=0.018 Sum_probs=49.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHHHHHhhCC-CCcEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPKEILAQLK-PGGRLVF 91 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~~l~~~L~-pGGrLv~ 91 (156)
+..|+++|++++.++.|+++ + +.++.+|..+...+ ...+|+|+.--+.+++...+.+.=+ -|.-|++
T Consensus 39 G~~ViaIDi~~~aV~~a~~~-----~------~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 39 GFDVIVIDINEKAVEKAKKL-----G------LNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred CCEEEEEECCHHHHHHHHHh-----C------CeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 47999999999988777644 2 56888998875444 4679999999888888776665433 3555555
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.07 E-value=0.58 Score=31.08 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=50.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCCC--CCcCEEEEccCC-----CchHHHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAEE--GPYDIIHLGAAC-----IEVPKEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~~--~~fD~I~i~~~~-----~~i~~~l~~~L~pG 86 (156)
..++++|.++.+++.++..... .+..+ +.+..+|.... .+-. ..||.+...... ......+.+.|+|+
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAEG-AGLGL---VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPG 148 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhhh-cCCCc---eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCC
Confidence 4899999999999996655432 12222 46777776642 2222 379999443333 23335678899999
Q ss_pred cEEEEEecc
Q psy14971 87 GRLVFHKGL 95 (156)
Q Consensus 87 GrLv~~~~~ 95 (156)
|.+++....
T Consensus 149 g~~~~~~~~ 157 (257)
T COG0500 149 GRLVLSDLL 157 (257)
T ss_pred cEEEEEecc
Confidence 999997754
No 232
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.06 E-value=0.029 Score=46.04 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=43.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~ 73 (156)
|+-..+.+..++ ++|+++|.|+++++.|++++.. ++ ++ +.+++++-.+. ......+|.|+++-+++
T Consensus 33 GHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-~~-~r---~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 33 GHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-FD-DR---FIFIHGNFSNLDEYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-CC-TT---EEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-cc-ce---EEEEeccHHHHHHHHHHccCCCccCEEEEccccC
Confidence 455566666666 9999999999999999999886 33 45 99999886542 11235799999988664
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.05 E-value=0.15 Score=44.50 Aligned_cols=54 Identities=7% Similarity=-0.069 Sum_probs=38.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---C-C-CCCCcCEEEEccCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---H-A-EEGPYDIIHLGAAC 72 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~-~-~~~~fD~I~i~~~~ 72 (156)
-.++++|+++..++.|+.++.. ++... +.+..+|.... . . ..+.||+|+.+-+.
T Consensus 64 ~~i~g~DId~~a~~~a~~~l~~-~~~~~---~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKKLLGE-FALLE---INVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred eeeeeechhHHHHHHHHHHHhh-cCCCC---ceeeecccccccccccccccCcccEEEeCCCc
Confidence 5799999999999999999987 35223 56666664321 1 1 13579999998753
No 234
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.05 E-value=0.16 Score=37.96 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.0
Q ss_pred chHHH---HHHhcCCCCE--EEEEeCCHHHHHHHH---HHHhhhcCCCCccceEEEE-ccCCCCCC----CCCCcCEEEE
Q psy14971 2 GDLNV---IVGIKGERAL--VLILNHYMKVKSKNQ---NNKKLNIKQNRKSFKNVSV-KDGSKGHA----EEGPYDIIHL 68 (156)
Q Consensus 2 G~la~---la~l~g~~g~--V~avD~~~~~~~~A~---~~l~~~~g~~n~~~v~~~~-gD~~~~~~----~~~~fD~I~i 68 (156)
|++++ +++..++... .+++|..+++.+.-. +|++. +.-.+ +++.. -|+..... ....||+|+.
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-L~~~g---~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-LRELG---VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-HhhcC---CccccCCCCCcccccccccCCcCCEEEE
Confidence 56664 4445453334 556777777776644 67766 43333 55554 36655322 2478999999
Q ss_pred ccCCCc---------h----------HHHHHhhCCCCcEEEEEeccC
Q psy14971 69 GAACIE---------V----------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 69 ~~~~~~---------i----------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.+... + ..+..+.|+++|.+.+...+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 886543 1 124568899999999988754
No 235
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.00 E-value=0.11 Score=41.15 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=38.4
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-cCCCC----ccceEEEEccCCCCCC-CCCCcCEEEEccCCCc
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-IKQNR----KSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE 74 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-~g~~n----~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~ 74 (156)
|+++..+| ++|+++|.+|-+....++-++++ -+.+- -+.++++++|..+.+. ...+||+|+++-+.++
T Consensus 90 a~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 90 AFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 45444566 68999999999998888777653 01110 0129999999987554 2578999999998764
No 236
>KOG3010|consensus
Probab=94.94 E-value=0.024 Score=45.03 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch--H---HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV--P---KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i--~---~~l~~~L~pGGr 88 (156)
..+|+|+|++++|++.|++.......... .++...+..+......+.|.|.+.-+++.. + ....+.||+.|-
T Consensus 55 ~k~VIatD~s~~mL~~a~k~~~~~y~~t~---~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 55 YKEVIATDVSEAMLKVAKKHPPVTYCHTP---STMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred hhhheeecCCHHHHHHhhcCCCcccccCC---ccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCC
Confidence 36899999999999999876543101011 233333333333235689999998888732 2 456789988664
Q ss_pred EEEE
Q psy14971 89 LVFH 92 (156)
Q Consensus 89 Lv~~ 92 (156)
++++
T Consensus 132 ~iav 135 (261)
T KOG3010|consen 132 LIAV 135 (261)
T ss_pred EEEE
Confidence 4443
No 237
>KOG2187|consensus
Probab=94.70 E-value=0.045 Score=47.62 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=55.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC-----CCcC-EEEEccCCCchHHHHHhh---CC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE-----GPYD-IIHLGAACIEVPKEILAQ---LK 84 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~-----~~fD-~I~i~~~~~~i~~~l~~~---L~ 84 (156)
..+|++||++++.++-|+.|.+.+ |++| .+|++|-+.+..+.. +.-+ .++++-+...+...+..+ .+
T Consensus 405 ~~~ViGvEi~~~aV~dA~~nA~~N-gisN---a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 405 VKRVIGVEISPDAVEDAEKNAQIN-GISN---ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYK 480 (534)
T ss_pred ccceeeeecChhhcchhhhcchhc-Cccc---eeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence 379999999999999999999997 9999 999999665544331 2346 777777766555444333 33
Q ss_pred CCcEEEEEecc
Q psy14971 85 PGGRLVFHKGL 95 (156)
Q Consensus 85 pGGrLv~~~~~ 95 (156)
.-=|++...+.
T Consensus 481 ~~~rlvyvSCn 491 (534)
T KOG2187|consen 481 NPRRLVYVSCN 491 (534)
T ss_pred CccceEEEEcC
Confidence 23456665554
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.64 E-value=0.23 Score=35.68 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred CchHHHHHHh-c---CCCCEEEEEeCCHHHHHHHHHHHhhhcC--C-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGI-K---GERALVLILNHYMKVKSKNQNNKKLNIK--Q-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l-~---g~~g~V~avD~~~~~~~~A~~~l~~~~g--~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|||+.+... + .+.-+|++||.++++++.|+++.+. ++ . .+ +++..++.... ....+.+.++---++.
T Consensus 36 ~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~vgLHaCG 110 (141)
T PF13679_consen 36 KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKR---LSFIQGDIADE-SSSDPPDILVGLHACG 110 (141)
T ss_pred hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhcc---chhhccchhhh-cccCCCeEEEEeeccc
Confidence 3899975444 2 4678999999999999999999887 46 3 34 66777664432 2234567777666777
Q ss_pred chHHHHHh-hCCCCcEEEE
Q psy14971 74 EVPKEILA-QLKPGGRLVF 91 (156)
Q Consensus 74 ~i~~~l~~-~L~pGGrLv~ 91 (156)
.+.+.+++ .++++-+.++
T Consensus 111 ~Ls~~~l~~~~~~~~~~l~ 129 (141)
T PF13679_consen 111 DLSDRALRLFIRPNARFLV 129 (141)
T ss_pred chHHHHHHHHHHcCCCEEE
Confidence 76654433 2235555444
No 239
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.64 E-value=0.17 Score=40.60 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC------chHHHHHhhCCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI------EVPKEILAQLKPG 86 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~------~i~~~l~~~L~pG 86 (156)
..+|++.|.++.|.. ++++ -|+ +++..| + +. ...+||+|.+-.-+. .+-..+.+.|+|+
T Consensus 116 f~~v~aTE~S~~Mr~----rL~~-kg~------~vl~~~--~-w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 116 FKEVYATEASPPMRW----RLSK-KGF------TVLDID--D-WQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred cceEEeecCCHHHHH----HHHh-CCC------eEEehh--h-hhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence 468999999999964 4444 243 333333 2 32 345899999866543 2335678899999
Q ss_pred cEEEEEecc
Q psy14971 87 GRLVFHKGL 95 (156)
Q Consensus 87 GrLv~~~~~ 95 (156)
|+|++.+.-
T Consensus 182 G~lilAvVl 190 (265)
T PF05219_consen 182 GRLILAVVL 190 (265)
T ss_pred CEEEEEEEe
Confidence 999998764
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.58 E-value=0.11 Score=40.10 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh------cCC--CCccceEEEEccCCCCCC-C--CCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN------IKQ--NRKSFKNVSVKDGSKGHA-E--EGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~------~g~--~n~~~v~~~~gD~~~~~~-~--~~~fD~I~i~~ 70 (156)
|-+.+.|.+..+-.+++|||+.+.+.+.|+...+.+ +|. .. +++..||..+... . -..-|+||++.
T Consensus 54 G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~---v~l~~gdfl~~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 54 GNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK---VELIHGDFLDPDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp SHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E---EEEECS-TTTHHHHHHHGHC-SEEEE--
T ss_pred CHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc---ceeeccCccccHhHhhhhcCCCEEEEec
Confidence 555555666555567999999999999998755432 232 33 8888999765311 0 12359999998
Q ss_pred CCC--chHH---HHHhhCCCCcEEEEE
Q psy14971 71 ACI--EVPK---EILAQLKPGGRLVFH 92 (156)
Q Consensus 71 ~~~--~i~~---~l~~~L~pGGrLv~~ 92 (156)
-+= .+.. ..+..||+|-++|..
T Consensus 131 ~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 131 TCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 762 2222 345678888887763
No 241
>KOG2671|consensus
Probab=94.56 E-value=0.036 Score=46.25 Aligned_cols=60 Identities=18% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHH-------HHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccC
Q psy14971 8 VGIKGERALVLILNHYMKVKS-------KNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAA 71 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~-------~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~ 71 (156)
|..-| +.|+|-|||-.++. ..+.|+++ +|... .++.+..+|... +|.....||+|+++.+
T Consensus 226 aa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQ-Yg~~~-~fldvl~~D~sn~~~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 226 AAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQ-YGSSS-QFLDVLTADFSNPPLRSNLKFDAIVCDPP 293 (421)
T ss_pred hhhhc--ceeeccccchheeecccCCCcchhHhHHH-hCCcc-hhhheeeecccCcchhhcceeeEEEeCCC
Confidence 44444 79999999998887 35678888 57422 137889999865 4555778999999864
No 242
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.38 Score=37.27 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--------CCCCcCEEEEccCCC---
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--------EEGPYDIIHLGAACI--- 73 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--------~~~~fD~I~i~~~~~--- 73 (156)
-++++.+++.++|+++|+.|= + -..+ |.++.+|...... ...++|.|+++++..
T Consensus 61 Qva~~~~~~~~~ivavDi~p~---------~---~~~~---V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g 125 (205)
T COG0293 61 QVAAKKLGAGGKIVAVDILPM---------K---PIPG---VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSG 125 (205)
T ss_pred HHHHHHhCCCCcEEEEECccc---------c---cCCC---ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCC
Confidence 357788898899999999863 2 2356 9999999875321 134579999998762
Q ss_pred -----ch---------HHHHHhhCCCCcEEEEEec
Q psy14971 74 -----EV---------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -----~i---------~~~l~~~L~pGGrLv~~~~ 94 (156)
+. ++...+.|+|||.+++-.-
T Consensus 126 ~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 126 NRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 11 1234678999999999764
No 243
>KOG0820|consensus
Probab=94.38 E-value=0.29 Score=39.73 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
|-||. .++..+..|+|+|+|+.|+...+++.+. ....+. .++++||.... +..-||.++.+-+.
T Consensus 70 GnLT~--~lLe~~kkVvA~E~Dprmvael~krv~g-tp~~~k--LqV~~gD~lK~--d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 70 GNLTV--KLLEAGKKVVAVEIDPRMVAELEKRVQG-TPKSGK--LQVLHGDFLKT--DLPRFDGCVSNLPY 133 (315)
T ss_pred CHHHH--HHHHhcCeEEEEecCcHHHHHHHHHhcC-CCccce--eeEEecccccC--CCcccceeeccCCc
Confidence 55553 2333358999999999999999999875 233344 99999998753 23458999986543
No 244
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.36 E-value=0.078 Score=44.71 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=56.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEEEccCCCCC-CCCCCcCEEEEccC--CCchHHHHHhhCCCCc
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVSVKDGSKGH-AEEGPYDIIHLGAA--CIEVPKEILAQLKPGG 87 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~--~~~i~~~l~~~L~pGG 87 (156)
....+|++-|++++.++..++|++.+ ++.. + +++.+.|+.... .....||.|=+|.= ....-+...+.++.||
T Consensus 72 ~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~--~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 72 AGVDKVTANDISPEAVELIKRNLELN-GLEDER--IEVSNMDANVLLYSRQERFDVIDLDPFGSPAPFLDSALQAVKDGG 148 (377)
T ss_dssp SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCC--EEEEES-HHHHHCHSTT-EEEEEE--SS--HHHHHHHHHHEEEEE
T ss_pred CCCCEEEEecCCHHHHHHHHHhHhhc-cccCce--EEEehhhHHHHhhhccccCCEEEeCCCCCccHhHHHHHHHhhcCC
Confidence 33479999999999999999999886 6543 3 889999986533 23567999999853 2234467788899999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
.|.+...
T Consensus 149 ll~vTaT 155 (377)
T PF02005_consen 149 LLCVTAT 155 (377)
T ss_dssp EEEEEE-
T ss_pred EEEEecc
Confidence 9999754
No 245
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.34 E-value=0.17 Score=41.22 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=50.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceE-EEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKN-VSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~-~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
|.+++ +|+..|. .+|+++|.+++.++.|++ +|.+. +- ....+..+.....+.+|.||-..+.+..-+..
T Consensus 182 G~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~-----lGa~~---vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~ 252 (343)
T PRK09880 182 GCLIVAAVKTLGA-AEIVCADVSPRSLSLARE-----MGADK---LVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTC 252 (343)
T ss_pred HHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH-----cCCcE---EecCCcccHHHHhccCCCCCEEEECCCCHHHHHHH
Confidence 44444 4555552 479999999998888764 24322 11 00011111111124599999877765555667
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|++||+++..-
T Consensus 253 ~~~l~~~G~iv~~G 266 (343)
T PRK09880 253 LEVTRAKGVMVQVG 266 (343)
T ss_pred HHHhhcCCEEEEEc
Confidence 88999999999853
No 246
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.30 E-value=0.013 Score=43.78 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=46.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----C----C-CCCCcCEEEEccC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----H----A-EEGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----~----~-~~~~fD~I~i~~~ 71 (156)
|+..++++..++.++|+|+|+.+. . ...+ +..+.+|..+. . . ...+||.|++|++
T Consensus 36 Gws~~~~~~~~~~~~v~avDl~~~---------~---~~~~---~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 36 GWSQVLLQRGGPAGRVVAVDLGPM---------D---PLQN---VSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp HHHHHHHTSTTTEEEEEEEESSST---------G---S-TT---EEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ceeeeeeecccccceEEEEecccc---------c---cccc---eeeeecccchhhHHHhhhhhccccccCcceeccccc
Confidence 455567777667799999999977 1 1234 55556665321 1 1 1258999999994
Q ss_pred CC--chH---------------HHHHhhCCCCcEEEEEec
Q psy14971 72 CI--EVP---------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 72 ~~--~i~---------------~~l~~~L~pGGrLv~~~~ 94 (156)
.. ..+ ....+.|+|||.+|+-+-
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 32 110 123578999999888653
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.18 E-value=0.095 Score=40.52 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=62.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|-.++.|.+.|. ..|++.|++|...+..+-|.+.+ |+ + |.+...|..- +...||.++.+--+-+=+
T Consensus 91 gLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an-gv-~---i~~~~~d~~g---~~~~~Dl~LagDlfy~~~~a~~l 161 (218)
T COG3897 91 GLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN-GV-S---ILFTHADLIG---SPPAFDLLLAGDLFYNHTEADRL 161 (218)
T ss_pred ChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc-cc-e---eEEeeccccC---CCcceeEEEeeceecCchHHHHH
Confidence 555667777775 89999999999999999999985 75 5 8899988653 446799999876543211
Q ss_pred HHHHhhCCCCcEEEEEe
Q psy14971 77 KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~ 93 (156)
-.|+..|+..|.-|++.
T Consensus 162 ~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 162 IPWKDRLAEAGAAVLVG 178 (218)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 13788888888777743
No 248
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.11 E-value=0.27 Score=39.64 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=54.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---C--------CCCCcCEEEEccCCCch
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---A--------EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~--------~~~~fD~I~i~~~~~~i 75 (156)
+|+.+.|.++|+=+|++|-.+..+|.-+... .-.. ..++.+|..+.- . +....=++++.+-++.+
T Consensus 88 vAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-~~g~---t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v 163 (267)
T PF04672_consen 88 VAQRVAPDARVVYVDNDPVVLAHARALLADN-PRGR---TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV 163 (267)
T ss_dssp HHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSE---EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS
T ss_pred HHHhhCCCceEEEECCCchHHHHHHhhhcCC-CCcc---EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC
Confidence 5777889999999999999999999998763 2223 789999987521 1 11222356666666655
Q ss_pred H---------HHHHhhCCCCcEEEEEeccCC
Q psy14971 76 P---------KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 76 ~---------~~l~~~L~pGGrLv~~~~~~~ 97 (156)
+ ..+.+.|.||..|++...+.+
T Consensus 164 ~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 164 PDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 4 357899999999999887554
No 249
>KOG3191|consensus
Probab=94.08 E-value=0.23 Score=38.07 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=67.8
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
|..+ +++...++.....+.|++|+.++..++.++.+ +. + +.++..|...++.. ++.|.++.+-+.- .+
T Consensus 55 GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-~~-~---~~~V~tdl~~~l~~-~~VDvLvfNPPYVpt~~~~i 128 (209)
T KOG3191|consen 55 GVVSTFLASVIGPQALYLATDINPEALEATLETARCN-RV-H---IDVVRTDLLSGLRN-ESVDVLVFNPPYVPTSDEEI 128 (209)
T ss_pred chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-CC-c---cceeehhHHhhhcc-CCccEEEECCCcCcCCcccc
Confidence 4554 67888889999999999999999999888764 43 4 78899998877765 7899999886531 11
Q ss_pred ------------------HHH----HHhhCCCCcEEEEEeccCCC
Q psy14971 76 ------------------PKE----ILAQLKPGGRLVFHKGLHNG 98 (156)
Q Consensus 76 ------------------~~~----l~~~L~pGGrLv~~~~~~~~ 98 (156)
.+. +-+.|.|.|.++......+.
T Consensus 129 ~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 129 GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 122 33567899999998765543
No 250
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.07 E-value=0.2 Score=40.99 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=48.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeC---CHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNH---YMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~---~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+..| .+|++++. +++..+.++ + +|.+. +.....|..+ ......+|.||-..+.+....
T Consensus 185 G~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~-~Ga~~---v~~~~~~~~~-~~~~~~~d~vid~~g~~~~~~ 253 (355)
T cd08230 185 GLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----E-LGATY---VNSSKTPVAE-VKLVGEFDLIIEATGVPPLAF 253 (355)
T ss_pred HHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----H-cCCEE---ecCCccchhh-hhhcCCCCEEEECcCCHHHHH
Confidence 44554 456665 48999997 566666654 3 34321 2111111111 112246999999887655556
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
...+.|++||+++..-
T Consensus 254 ~~~~~l~~~G~~v~~G 269 (355)
T cd08230 254 EALPALAPNGVVILFG 269 (355)
T ss_pred HHHHHccCCcEEEEEe
Confidence 6789999999998753
No 251
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.98 E-value=0.16 Score=39.36 Aligned_cols=76 Identities=14% Similarity=-0.021 Sum_probs=53.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCC-------CCCcCEEEEccCCCchH--------HH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAE-------EGPYDIIHLGAACIEVP--------KE 78 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~-------~~~fD~I~i~~~~~~i~--------~~ 78 (156)
-.=..-|.++......+..+.. .+.+|. ..-+.-|+... ++. ..+||+||+-..++=+| ..
T Consensus 50 l~WqPSD~~~~~~~sI~a~~~~-~~~~Nv--~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~ 126 (204)
T PF06080_consen 50 LTWQPSDPDDNLRPSIRAWIAE-AGLPNV--RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAG 126 (204)
T ss_pred CEEcCCCCChHHHhhHHHHHHh-cCCccc--CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHH
Confidence 4556678888888777777777 377773 23555676654 332 35899999988776444 34
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
..+.|++||.|++.=
T Consensus 127 a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 127 AARLLKPGGLLFLYG 141 (204)
T ss_pred HHHhCCCCCEEEEeC
Confidence 568999999999853
No 252
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.29 E-value=0.17 Score=39.26 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=46.9
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHH----HHHHHHHHHhh-hcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMK----VKSKNQNNKKL-NIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-- 73 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~----~~~~A~~~l~~-~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-- 73 (156)
||.+ +++..+++.|.|+++=-.+- ..+..+.+... .-...| ++.+-.+..... ...+.|.++.....+
T Consensus 60 Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN---~e~~~~~~~A~~-~pq~~d~~~~~~~yhdm 135 (238)
T COG4798 60 GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN---VEVIGKPLVALG-APQKLDLVPTAQNYHDM 135 (238)
T ss_pred ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh---hhhhCCcccccC-CCCcccccccchhhhhh
Confidence 6666 67899999999999854432 11111111100 002234 444444433222 123345555433222
Q ss_pred -----------chHHHHHhhCCCCcEEEEEe
Q psy14971 74 -----------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -----------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+-..+.+.|||||.+++..
T Consensus 136 h~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 136 HNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred hccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 22346789999999999864
No 253
>KOG1253|consensus
Probab=93.06 E-value=0.2 Score=43.56 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=64.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC----CCCCCCcCEEEEcc--CCCchHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG----HAEEGPYDIIHLGA--ACIEVPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~----~~~~~~fD~I~i~~--~~~~i~~~l~~ 81 (156)
|..++.-..|++-|.++..++..++|.+.+ +.++. ++..++|+... ......||+|-++. +...+-+..++
T Consensus 128 a~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-~v~~i--ve~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs~s~FLDsAvq 204 (525)
T KOG1253|consen 128 AKELPGVRQVVANDLNENAVTSIQRNVELN-GVEDI--VEPHHSDANVLMYEHPMVAKFFDVIDLDPYGSPSPFLDSAVQ 204 (525)
T ss_pred HHHhcchhhhcccCCCHHHHHHHHhhhhhc-Cchhh--cccccchHHHHHHhccccccccceEecCCCCCccHHHHHHHH
Confidence 444555678999999999999999999875 55543 77788887431 11136799999984 55667788899
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.++.||.|.+...
T Consensus 205 av~~gGLL~vT~T 217 (525)
T KOG1253|consen 205 AVRDGGLLCVTCT 217 (525)
T ss_pred HhhcCCEEEEEec
Confidence 9999999999754
No 254
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.94 E-value=0.83 Score=37.72 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=51.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEE--EEccCCCCC---CC---CCCcCEE-EEccCCCchHH-------
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNV--SVKDGSKGH---AE---EGPYDII-HLGAACIEVPK------- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~--~~gD~~~~~---~~---~~~fD~I-~i~~~~~~i~~------- 77 (156)
...-+++|++.++++.+.+++... .+++ +++ ++||-.++. +. ......+ |.+.+..++++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~-~~p~---l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL 179 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLG-NFSH---VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFL 179 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhc-cCCC---eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHH
Confidence 467899999999999999999831 3455 655 788875542 21 1223444 44556666542
Q ss_pred -HHHh-hCCCCcEEEEEec
Q psy14971 78 -EILA-QLKPGGRLVFHKG 94 (156)
Q Consensus 78 -~l~~-~L~pGGrLv~~~~ 94 (156)
.+.+ .|+|||.|++-+.
T Consensus 180 ~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 180 AGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHHHHhhCCCCCEEEEecC
Confidence 4556 7999999999654
No 255
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.51 E-value=0.25 Score=40.27 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=52.6
Q ss_pred hHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccC
Q psy14971 3 DLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAA 71 (156)
Q Consensus 3 ~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~ 71 (156)
+|+-+ +.+.+-..+|.-+|||+.+++.-.+-.+. +|++| ++...-|...++|+ ...||.++.+.+
T Consensus 163 DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee-~g~~~---ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 163 DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE-LGYNN---IEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH-hCccc---hhheeehhcccChHHHHhhCCeeecCch
Confidence 34544 34555567999999999999999999999 69999 99999999988887 378998887654
No 256
>KOG3178|consensus
Probab=92.33 E-value=0.61 Score=38.83 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------H
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------K 77 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~ 77 (156)
++-.++....+|-+++.+...+-.++.++. . | |+.+.||..+..|. -|+|++--.+++.+ .
T Consensus 191 v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~-g------V~~v~gdmfq~~P~---~daI~mkWiLhdwtDedcvkiLk 259 (342)
T KOG3178|consen 191 VLKNLLSKYPHIKGINFDLPFVLAAAPYLA-P-G------VEHVAGDMFQDTPK---GDAIWMKWILHDWTDEDCVKILK 259 (342)
T ss_pred HHHHHHHhCCCCceeecCHHHHHhhhhhhc-C-C------cceecccccccCCC---cCeEEEEeecccCChHHHHHHHH
Confidence 333444345679999999999988888875 2 4 66688998876443 47999988777654 4
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+++.|+|||.+++...
T Consensus 260 nC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 260 NCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHhCCCCCEEEEEec
Confidence 67899999999999765
No 257
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.24 E-value=0.61 Score=37.04 Aligned_cols=46 Identities=13% Similarity=-0.015 Sum_probs=34.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG 56 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~ 56 (156)
|.+|- +++.. .+|+++|+|+.+.+..++++.. .+| ++++.+|+.+.
T Consensus 42 G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~---~~~---~~vi~~D~l~~ 88 (262)
T PF00398_consen 42 GALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS---NPN---VEVINGDFLKW 88 (262)
T ss_dssp SCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT---CSS---EEEEES-TTTS
T ss_pred ccchhhHhccc---CcceeecCcHhHHHHHHHHhhh---ccc---ceeeecchhcc
Confidence 55664 33332 7999999999999999988764 257 99999999863
No 258
>KOG0024|consensus
Probab=91.97 E-value=0.66 Score=38.53 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC--------CCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG--------SKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~--------~~~~~~~~~fD~I~i~~~~ 72 (156)
|-++.+ |+..|. .+|+.+|..+..++.|++ + |.+. +....... .+..-....||..|-....
T Consensus 182 Gl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~----Ga~~---~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~ 252 (354)
T KOG0024|consen 182 GLLTGLVAKAMGA-SDVVITDLVANRLELAKK-F----GATV---TDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA 252 (354)
T ss_pred HHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-h----CCeE---EeeccccccHHHHHHHHHhhccccCCCeEEEccCc
Confidence 445544 566775 899999999999999997 4 4332 22222211 0111112348999988888
Q ss_pred CchHHHHHhhCCCCcEEEEEe
Q psy14971 73 IEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..-.+.....|+.||.++...
T Consensus 253 ~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 253 EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred hHHHHHHHHHhccCCEEEEec
Confidence 766677788999999966654
No 259
>KOG1269|consensus
Probab=91.95 E-value=0.26 Score=41.38 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGG 87 (156)
...+++++.++.-+.++.+..... +++|. -.++.+|..+...++..||.+.+--.....| .++.+.++|||
T Consensus 133 ~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k--~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 133 KAGVVGLDNNAYEAFRANELAKKA-YLDNK--CNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHH-Hhhhh--cceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCc
Confidence 368999999999999988877663 55443 4458889888777778899998765554444 46788999999
Q ss_pred EEEEEe
Q psy14971 88 RLVFHK 93 (156)
Q Consensus 88 rLv~~~ 93 (156)
..++-.
T Consensus 210 ~~i~~e 215 (364)
T KOG1269|consen 210 LFIVKE 215 (364)
T ss_pred eEEeHH
Confidence 999864
No 260
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.91 E-value=0.041 Score=43.65 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=49.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCC------CchHHHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAAC------IEVPKEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~------~~i~~~l~~~L~pG 86 (156)
.+.+++|+|+.|++.|.++=- ++ ++.++|+..-. .+..+||.|...-.. ..+.......|+||
T Consensus 148 ~~ltGvDiS~nMl~kA~eKg~----YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 148 DRLTGVDISENMLAKAHEKGL----YD-----TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred hhccCCchhHHHHHHHHhccc----hH-----HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 578999999999999987621 11 13334443211 234679998875433 33444567899999
Q ss_pred cEEEEEeccCCC
Q psy14971 87 GRLVFHKGLHNG 98 (156)
Q Consensus 87 GrLv~~~~~~~~ 98 (156)
|.+.+.+.+...
T Consensus 219 GlfaFSvE~l~~ 230 (287)
T COG4976 219 GLFAFSVETLPD 230 (287)
T ss_pred ceEEEEecccCC
Confidence 999998865443
No 261
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.20 E-value=2.5 Score=37.16 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=51.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc---CCCC----C------------CC-C
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD---GSKG----H------------AE-E 60 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD---~~~~----~------------~~-~ 60 (156)
|-.++ .|+.+| +.|+++|++++.++.+++ +|.+. +.+-..+ ...+ . .+ .
T Consensus 177 GL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes-----lGA~~---v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 177 GLAAIGAAGSLG--AIVRAFDTRPEVAEQVES-----MGAEF---LELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-----cCCeE---EEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 33444 355666 489999999999988875 24321 2111111 0000 0 00 1
Q ss_pred CCcCEEEEccCCCc-----h-HHHHHhhCCCCcEEEEEec
Q psy14971 61 GPYDIIHLGAACIE-----V-PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 61 ~~fD~I~i~~~~~~-----i-~~~l~~~L~pGGrLv~~~~ 94 (156)
..+|.+|.++..+. + .+...+.+||||+++..-.
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 35899999987643 3 4678899999999888654
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=90.59 E-value=0.27 Score=39.58 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.0
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCC----------------------chHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACI----------------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~----------------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.++++||+.+... ...+||+|+++.+.. .....+.+.|||||.|++...
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 6789999877422 246899999987631 112356789999999998654
No 263
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.56 E-value=2 Score=34.93 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+|+..| .+|++++.+++..+.|++ +|.+. + +. ..+ .....+|.++...+........++.|++|
T Consensus 184 ~a~~~G--~~vi~~~~~~~~~~~a~~-----~Ga~~---v--i~--~~~--~~~~~~d~~i~~~~~~~~~~~~~~~l~~~ 247 (329)
T TIGR02822 184 VALAQG--ATVHVMTRGAAARRLALA-----LGAAS---A--GG--AYD--TPPEPLDAAILFAPAGGLVPPALEALDRG 247 (329)
T ss_pred HHHHCC--CeEEEEeCChHHHHHHHH-----hCCce---e--cc--ccc--cCcccceEEEECCCcHHHHHHHHHhhCCC
Confidence 455554 579999999988766653 36533 2 11 111 11235888776554444555677899999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|++++.
T Consensus 248 G~~v~~ 253 (329)
T TIGR02822 248 GVLAVA 253 (329)
T ss_pred cEEEEE
Confidence 999874
No 264
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.55 E-value=1.2 Score=35.91 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=46.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.+++ +|+..|. ..|+++|.+++.++.|++. ..-| . .+ + ....+|.||=..+.....+..+
T Consensus 157 G~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~-----~~i~---~----~~--~---~~~g~Dvvid~~G~~~~~~~~~ 218 (308)
T TIGR01202 157 GRLLARLTKAAGG-SPPAVWETNPRRRDGATGY-----EVLD---P----EK--D---PRRDYRAIYDASGDPSLIDTLV 218 (308)
T ss_pred HHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc-----cccC---h----hh--c---cCCCCCEEEECCCCHHHHHHHH
Confidence 55555 4555552 3477889988877665531 1111 1 00 0 1235899988777665566778
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.|++||++++.
T Consensus 219 ~~l~~~G~iv~~ 230 (308)
T TIGR01202 219 RRLAKGGEIVLA 230 (308)
T ss_pred HhhhcCcEEEEE
Confidence 999999999974
No 265
>KOG0023|consensus
Probab=90.41 E-value=0.52 Score=39.12 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=51.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC--CCchHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA--CIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~--~~~i~~~ 78 (156)
|.+++ .|...| .+|+++|.++.--+.|-+ + +|.+.. +.+. .|....-.-.+..|.++-+.. ..+-.+.
T Consensus 194 Gh~aVq~AKAMG--~rV~vis~~~~kkeea~~---~-LGAd~f--v~~~-~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~ 264 (360)
T KOG0023|consen 194 GHMAVQYAKAMG--MRVTVISTSSKKKEEAIK---S-LGADVF--VDST-EDPDIMKAIMKTTDGGIDTVSNLAEHALEP 264 (360)
T ss_pred chHHHHHHHHhC--cEEEEEeCCchhHHHHHH---h-cCccee--EEec-CCHHHHHHHHHhhcCcceeeeeccccchHH
Confidence 66676 477776 799999999765554444 4 465551 2222 121110011234566666555 4455577
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.||++|.+|+.--+
T Consensus 265 ~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 265 LLGLLKVNGTLVLVGLP 281 (360)
T ss_pred HHHHhhcCCEEEEEeCc
Confidence 89999999999996543
No 266
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.27 E-value=1.2 Score=37.60 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEcc--CCCchHHHHHhhCCCCcEEEEE
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGA--ACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~--~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
+|+.=|++|+.++.+++|++.+ ...+ ..++..|+.....+ ...||.|=++. +...+.+...+.++.||.|-+.
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N-~~~~---~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLN-SGED---AEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhc-Cccc---ceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 8999999999999999999874 3456 77777887654333 46799998875 2223346777788899999987
Q ss_pred ecc
Q psy14971 93 KGL 95 (156)
Q Consensus 93 ~~~ 95 (156)
..+
T Consensus 154 ATD 156 (380)
T COG1867 154 ATD 156 (380)
T ss_pred ecc
Confidence 653
No 267
>KOG2352|consensus
Probab=89.77 E-value=0.48 Score=41.11 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-------CCCCCCcCEEEEccCCCc-----------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-------HAEEGPYDIIHLGAACIE----------- 74 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-------~~~~~~fD~I~i~~~~~~----------- 74 (156)
+..+++++|++|++++.|++++.. ..-.+ ..++..|+.+- -++...||+++++-.-..
T Consensus 318 p~~~i~~ve~dP~~l~va~q~f~f-~q~~r---~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~f 393 (482)
T KOG2352|consen 318 PKFQITAVEIDPEMLEVATQYFGF-MQSDR---NKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAF 393 (482)
T ss_pred CccceeEEEEChhHhhccHhhhch-hhhhh---hhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHH
Confidence 457999999999999999999864 22222 45566666431 124578999999764432
Q ss_pred hH----HHHHhhCCCCcEEEEEeccCC
Q psy14971 75 VP----KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 75 i~----~~l~~~L~pGGrLv~~~~~~~ 97 (156)
+. ......|.|-|.+++...+.+
T Consensus 394 va~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 394 VAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred HHHHHHHHHhhccCccceEEEEEecCC
Confidence 11 134678999999999876543
No 268
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.65 E-value=1.6 Score=35.56 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC---CchHHHHHhhCCCCcEEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC---IEVPKEILAQLKPGGRLVF 91 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~---~~i~~~l~~~L~pGGrLv~ 91 (156)
.+|+++|.+++.++.|++ + +. ...+ .+ +.+...+|.||=..+- +...+...+.|++||++++
T Consensus 190 ~~vi~~~~~~~k~~~a~~-~----~~-----~~~~-~~----~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 190 SKLVVFGKHQEKLDLFSF-A----DE-----TYLI-DD----IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CcEEEEeCcHhHHHHHhh-c----Cc-----eeeh-hh----hhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 689999999998888864 2 21 1111 11 1112248999865552 2334566889999999987
Q ss_pred E
Q psy14971 92 H 92 (156)
Q Consensus 92 ~ 92 (156)
.
T Consensus 255 ~ 255 (341)
T cd08237 255 M 255 (341)
T ss_pred E
Confidence 5
No 269
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.51 E-value=0.61 Score=36.45 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEEccCCCCCCCCCCcCEEEEccCCC--chH---HHHHhhCCCCcEEEEEecc
Q psy14971 48 VSVKDGSKGHAEEGPYDIIHLGAACI--EVP---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 48 ~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~---~~l~~~L~pGGrLv~~~~~ 95 (156)
++.+|.....-+++..|+++.+-++- +.+ .+..+.|||||.|.+....
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 56688765434567899999987764 444 4668899999999998654
No 270
>PHA01634 hypothetical protein
Probab=88.78 E-value=2.4 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=40.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~ 70 (156)
|+-++--.+.|. .+|+++|.++.+.+..++|++.+ .+-+ .+-+...|+ .-++||...++.
T Consensus 40 GdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n-nI~D-------K~v~~~eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 40 GSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF-NICD-------KAVMKGEWNGEYEDVDIFVMDC 100 (156)
T ss_pred cchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh-eeee-------ceeecccccccCCCcceEEEEc
Confidence 555555445554 79999999999999999999863 3211 112222344 358999999986
No 271
>KOG1501|consensus
Probab=88.61 E-value=1.2 Score=38.57 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=59.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---------CCCCCCcCEEEEcc-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---------HAEEGPYDIIHLGA- 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---------~~~~~~fD~I~i~~- 70 (156)
.|-|+.||...|. -.|+|+|.-..|++.|++-..++ |.+.+ |+++.--..+. ....+-||.=+++-
T Consensus 77 TGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn-g~Sdk--I~vInkrStev~vg~~~RadI~v~e~fdtEligeG 152 (636)
T KOG1501|consen 77 TGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN-GMSDK--INVINKRSTEVKVGGSSRADIAVREDFDTELIGEG 152 (636)
T ss_pred ccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC-CCccc--eeeeccccceeeecCcchhhhhhHhhhhhhhhccc
Confidence 4889999988884 67999999999999999998886 76433 77776443331 11123466544443
Q ss_pred CCCchHHHHHhhCCCCcEEEE
Q psy14971 71 ACIEVPKEILAQLKPGGRLVF 91 (156)
Q Consensus 71 ~~~~i~~~l~~~L~pGGrLv~ 91 (156)
+.+.+..+.-.+|++|.+.|=
T Consensus 153 alps~qhAh~~L~~~nc~~VP 173 (636)
T KOG1501|consen 153 ALPSLQHAHDMLLVDNCKTVP 173 (636)
T ss_pred cchhHHHHHHHhcccCCeecc
Confidence 566666666667777777654
No 272
>KOG1227|consensus
Probab=87.63 E-value=0.51 Score=38.85 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=53.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---chHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i~~ 77 (156)
||+++ ..-..| ...|+++|.+|..++.-|++++.+ ++..+ -.++.||....-+ ...-|+|.++--.+ .-|
T Consensus 206 GYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N-~V~~r--~~i~~gd~R~~~~-~~~AdrVnLGLlPSse~~W~- 279 (351)
T KOG1227|consen 206 GYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEAN-NVMDR--CRITEGDNRNPKP-RLRADRVNLGLLPSSEQGWP- 279 (351)
T ss_pred ceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhc-chHHH--HHhhhccccccCc-cccchheeeccccccccchH-
Confidence 66665 222223 368999999999999999999875 43221 4566777665333 35679999975332 122
Q ss_pred HHHhhCCC-Cc-EEEE
Q psy14971 78 EILAQLKP-GG-RLVF 91 (156)
Q Consensus 78 ~l~~~L~p-GG-rLv~ 91 (156)
.....|+| || +|-+
T Consensus 280 ~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 280 TAIKALKPEGGSILHI 295 (351)
T ss_pred HHHHHhhhcCCcEEEE
Confidence 34567777 55 4444
No 273
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.40 E-value=3.1 Score=34.93 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHhcCCC-CEEEEEeCCHHHHHHHHHHHhhhc---CCCCccceEEEEc----cCCCC---CCCCCCcCEEEEccCCCch
Q psy14971 7 IVGIKGER-ALVLILNHYMKVKSKNQNNKKLNI---KQNRKSFKNVSVK----DGSKG---HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 7 la~l~g~~-g~V~avD~~~~~~~~A~~~l~~~~---g~~n~~~v~~~~g----D~~~~---~~~~~~fD~I~i~~~~~~i 75 (156)
+|+..|.+ .+|+++|.+++.++.|++.+...- |.+ ..++.. +..+. ......+|.++...+....
T Consensus 195 ~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~----~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~ 270 (410)
T cd08238 195 YAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE----LLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPEL 270 (410)
T ss_pred HHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce----EEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHH
Confidence 34454422 479999999999999987532100 211 112211 10000 1122359999987655455
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
.....+.|+++|++++..+
T Consensus 271 ~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 271 VEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHHHHhccCCeEEEEEc
Confidence 5566889999998877654
No 274
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.02 E-value=0.54 Score=37.67 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=31.6
Q ss_pred EEEEccCCCCCCCC-----C-CcCEEEEccCCC----chH------HHHHhhCCCCcEEEEEecc
Q psy14971 47 NVSVKDGSKGHAEE-----G-PYDIIHLGAACI----EVP------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 47 ~~~~gD~~~~~~~~-----~-~fD~I~i~~~~~----~i~------~~l~~~L~pGGrLv~~~~~ 95 (156)
.++..|..+.-+-. . +||+|++...+. ... ..+.++|||||.|++....
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 37778887643221 2 499999876543 322 3678999999999997653
No 275
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=86.71 E-value=0.92 Score=36.61 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=34.3
Q ss_pred eEEEEccCCCCCCCC---CCcCEEEEccCC---Cch---HHHHHhhCCCCcEEEEEecc
Q psy14971 46 KNVSVKDGSKGHAEE---GPYDIIHLGAAC---IEV---PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 46 v~~~~gD~~~~~~~~---~~fD~I~i~~~~---~~i---~~~l~~~L~pGGrLv~~~~~ 95 (156)
+++..||..+..... +.||+|+...=. +++ -+.+.+.||||| +.+.+|+
T Consensus 146 ~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 146 LSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred eeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 777888887765544 789999886532 233 357789999999 5555653
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.31 E-value=5.3 Score=34.84 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=47.0
Q ss_pred chHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCC-CC----CCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGE---RALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKG-HA----EEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~---~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~-~~----~~~~fD~I~i~~~~ 72 (156)
|.|...+..++. ....++.|+++.....|+.|+--+ |.+ + +....+|.... .. ....||.|+.+.+.
T Consensus 199 g~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~~---~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 199 GMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEGD---ANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred HHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCcc---ccccccccccCCcccccCCccceeEEEeCCCC
Confidence 444445556653 367999999999999999999775 664 4 56777775432 22 23679999987654
No 277
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.07 E-value=1.5 Score=34.61 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=48.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+..|. .+|+++|.+++..+.|++ +|.+. + +-..+..+. ......+|.++-..+.....+
T Consensus 133 G~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~-----~Ga~~---~-i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~ 202 (280)
T TIGR03366 133 GLTAAAAAAAAGA-ARVVAADPSPDRRELALS-----FGATA---L-AEPEVLAERQGGLQNGRGVDVALEFSGATAAVR 202 (280)
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-----cCCcE---e-cCchhhHHHHHHHhCCCCCCEEEECCCChHHHH
Confidence 34443 3555552 359999999988877764 24322 1 111110000 111235899988766555556
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
...+.|+++|+++..-
T Consensus 203 ~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 203 ACLESLDVGGTAVLAG 218 (280)
T ss_pred HHHHHhcCCCEEEEec
Confidence 6788999999999854
No 278
>KOG2352|consensus
Probab=85.44 E-value=3.4 Score=35.97 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch----------------HH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----------------PK 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----------------~~ 77 (156)
...|+.+|+++-.++.....-.+ .... ..+...|.....-+.++||+++.-+....+ ..
T Consensus 71 ~~dI~~iD~S~V~V~~m~~~~~~--~~~~---~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~ 145 (482)
T KOG2352|consen 71 FEDITNIDSSSVVVAAMQVRNAK--ERPE---MQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLD 145 (482)
T ss_pred CCCceeccccHHHHHHHHhcccc--CCcc---eEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHh
Confidence 45799999999999888866533 2233 889999998766677889998886654322 13
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
...+.|++||+.+...-
T Consensus 146 eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 146 EVSRVLAPGGKYISVTL 162 (482)
T ss_pred hHHHHhccCCEEEEEEe
Confidence 45789999999776543
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=85.25 E-value=3.8 Score=33.57 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=34.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCC-CCCCcCEEEEccCCCch
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHA-EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~-~~~~fD~I~i~~~~~~i 75 (156)
+=+++|.|+|+..++.|++|++++-++.++ |+++.-+-. .+.. ....||...++.+...-
T Consensus 126 ~W~fvaTdID~~sl~~A~~nv~~N~~L~~~--I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 126 GWSFVATDIDPKSLESARENVERNPNLESR--IELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHT-T-TTT--EEEEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred CCeEEEecCCHHHHHHHHHHHHhccccccc--eEEEEcCCccccchhhhcccceeeEEecCCccccC
Confidence 469999999999999999999874134444 888865432 2221 23579999998776543
No 280
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.59 E-value=0.24 Score=34.68 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=21.2
Q ss_pred CcCEEEEccCCC------------chHHHHHhhCCCCcEEEEEe
Q psy14971 62 PYDIIHLGAACI------------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 62 ~fD~I~i~~~~~------------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.||.|++-...- .+...+.++|+|||+|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 378887744322 23356788999999999953
No 281
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.47 E-value=5.2 Score=32.08 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=37.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
+...+++++|.++.|++.++.-++.. ..... ... ..+......+..+.|.|++...+.++++
T Consensus 56 ~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~--~~~-~~~~~~~~~~~~~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 56 PSLKEYTCVDRSPEMLELAKRLLRAG-PNNRN--AEW-RRVLYRDFLPFPPDDLVIASYVLNELPS 117 (274)
T ss_pred cCceeeeeecCCHHHHHHHHHHHhcc-ccccc--chh-hhhhhcccccCCCCcEEEEehhhhcCCc
Confidence 34578999999999999999877652 21110 111 1111111122234599999998877663
No 282
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.19 E-value=2.6 Score=32.11 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
++...| .+|++++.+++..+.+++. +... ++....... .....++|.++...+.........+
T Consensus 153 ~a~~~g--~~v~~~~~~~~~~~~~~~~-----g~~~-----~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~ 220 (271)
T cd05188 153 LAKAAG--ARVIVTDRSDEKLELAKEL-----GADH-----VIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALR 220 (271)
T ss_pred HHHHcC--CeEEEEcCCHHHHHHHHHh-----CCce-----eccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHH
Confidence 344444 7899999998877766432 3211 111010000 1123579999987765455667788
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.|+++|+++..-.
T Consensus 221 ~l~~~G~~v~~~~ 233 (271)
T cd05188 221 LLRPGGRIVVVGG 233 (271)
T ss_pred hcccCCEEEEEcc
Confidence 9999999998543
No 283
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.51 E-value=5.1 Score=31.86 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC-C--CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS-K--GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~-~--~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|++++.+++..+.+++ +|.+. +-....+.. + .......+|.++-........+...+.|
T Consensus 184 la~~~G--~~V~~~~~s~~~~~~~~~-----~g~~~---~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l 253 (338)
T cd08254 184 IAKAMG--AAVIAVDIKEEKLELAKE-----LGADE---VLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAV 253 (338)
T ss_pred HHHHcC--CEEEEEcCCHHHHHHHHH-----hCCCE---EEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHh
Confidence 455554 579999999988877643 24322 111110000 0 0112356998887655555566778999
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
+++|+++..
T Consensus 254 ~~~G~~v~~ 262 (338)
T cd08254 254 KPGGRIVVV 262 (338)
T ss_pred hcCCEEEEE
Confidence 999999985
No 284
>PRK13699 putative methylase; Provisional
Probab=83.37 E-value=0.99 Score=35.29 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=31.1
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCC---------------------chHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACI---------------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~---------------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.++++||+.+... ++.++|+|+.+.+.. ..-.++.+.|||||.+++...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 4577788765432 246688888875431 011345689999999987544
No 285
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.96 E-value=9.2 Score=30.36 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCc
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGG 87 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGG 87 (156)
|+..| .+|++++.+++..+.+++ + |.+. +.....+ .....+|.++-..+.....+...+.|+++|
T Consensus 175 a~~~G--~~vi~~~~~~~~~~~~~~-~----g~~~---~~~~~~~-----~~~~~~d~vid~~g~~~~~~~~~~~l~~~g 239 (319)
T cd08242 175 LALTG--PDVVLVGRHSEKLALARR-L----GVET---VLPDEAE-----SEGGGFDVVVEATGSPSGLELALRLVRPRG 239 (319)
T ss_pred HHHcC--CeEEEEcCCHHHHHHHHH-c----CCcE---EeCcccc-----ccCCCCCEEEECCCChHHHHHHHHHhhcCC
Confidence 44454 568999988888777764 2 4322 1111111 223569999987655444556678899999
Q ss_pred EEEE
Q psy14971 88 RLVF 91 (156)
Q Consensus 88 rLv~ 91 (156)
+++.
T Consensus 240 ~~v~ 243 (319)
T cd08242 240 TVVL 243 (319)
T ss_pred EEEE
Confidence 9997
No 286
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.58 E-value=3.2 Score=33.39 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=44.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc--CCC---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD--GSK---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD--~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..|. .+|++++.+++..+.+++.+ |.+. + +...+ ..+ ... ...+|.|+-..+... ....++
T Consensus 174 lAk~~G~-~~Vi~~~~s~~~~~~~~~~l----Ga~~---v-i~~~~~~~~~~i~~~~-~~gvd~vid~~g~~~-~~~~~~ 242 (345)
T cd08293 174 IGRLLGC-SRVVGICGSDEKCQLLKSEL----GFDA---A-INYKTDNVAERLRELC-PEGVDVYFDNVGGEI-SDTVIS 242 (345)
T ss_pred HHHHcCC-CEEEEEcCCHHHHHHHHHhc----CCcE---E-EECCCCCHHHHHHHHC-CCCceEEEECCCcHH-HHHHHH
Confidence 4555542 27999999988777776543 4432 1 11111 000 011 145999986555433 356788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 243 ~l~~~G~iv~~ 253 (345)
T cd08293 243 QMNENSHIILC 253 (345)
T ss_pred HhccCCEEEEE
Confidence 99999999974
No 287
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=81.58 E-value=5.7 Score=31.79 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=42.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
...+...++|+|||..+++....-+.. ++. + .++...|.....+ ..+.|..++-=..+
T Consensus 125 ~~~~~a~Y~a~DID~~~ve~l~~~l~~-l~~-~---~~~~v~Dl~~~~~-~~~~DlaLllK~lp 182 (251)
T PF07091_consen 125 PEAPGATYIAYDIDSQLVEFLNAFLAV-LGV-P---HDARVRDLLSDPP-KEPADLALLLKTLP 182 (251)
T ss_dssp TSSTT-EEEEEESBHHHHHHHHHHHHH-TT--C---EEEEEE-TTTSHT-TSEESEEEEET-HH
T ss_pred ccCCCcEEEEEeCCHHHHHHHHHHHHh-hCC-C---cceeEeeeeccCC-CCCcchhhHHHHHH
Confidence 344567999999999999999999988 675 4 7888889876533 45689999865444
No 288
>KOG3115|consensus
Probab=81.15 E-value=7.4 Score=30.57 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=61.3
Q ss_pred chHHHHHHh--cCCCCEEEEEeCCHHHHHHHHHHHhhhcC-------CCCccceEEEEccCCCCCCC---CCCcCEEEEc
Q psy14971 2 GDLNVIVGI--KGERALVLILNHYMKVKSKNQNNKKLNIK-------QNRKSFKNVSVKDGSKGHAE---EGPYDIIHLG 69 (156)
Q Consensus 2 G~la~la~l--~g~~g~V~avD~~~~~~~~A~~~l~~~~g-------~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~ 69 (156)
||-.++-++ .-|...+++.||.....+..+++++. ++ +.| +.+...++..-.+. .+..+.+|..
T Consensus 70 GyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A-LR~~~a~~~~~n---i~vlr~namk~lpn~f~kgqLskmff~ 145 (249)
T KOG3115|consen 70 GYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA-LRRTSAEGQYPN---ISVLRTNAMKFLPNFFEKGQLSKMFFL 145 (249)
T ss_pred CccchhhhccccCccceeeeehhhHHHHHHHHHHHHH-Hhcccccccccc---ceeeeccchhhccchhhhcccccceee
Confidence 444444433 24678999999999999999999877 44 567 88998888764443 3455555555
Q ss_pred cCCCc--------------hHHHHHhhCCCCcEEEEEec
Q psy14971 70 AACIE--------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 70 ~~~~~--------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+-++ +.....-.|++||.++....
T Consensus 146 fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 146 FPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 44332 22345668999999998754
No 289
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=81.10 E-value=10 Score=31.66 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc----CC-Cc-hHHHHHhhCCC
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA----AC-IE-VPKEILAQLKP 85 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~----~~-~~-i~~~l~~~L~p 85 (156)
|-++.|+-+|++.+.++....-+ + .+ +..+..+....-..-...|.++-.- +. +. +.++...++||
T Consensus 189 glgA~Vtild~n~~rl~~ldd~f----~-~r---v~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~Mkp 260 (371)
T COG0686 189 GLGADVTILDLNIDRLRQLDDLF----G-GR---VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKP 260 (371)
T ss_pred ccCCeeEEEecCHHHHhhhhHhh----C-ce---eEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCC
Confidence 44689999999999886655443 2 13 5655554332111224567665432 22 22 34678899999
Q ss_pred CcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCcc
Q psy14971 86 GGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLK 134 (156)
Q Consensus 86 GGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~ 134 (156)
|..+|=+..+.++ .-+-...|-+.+.+|....+..-....+++...+.
T Consensus 261 GsVivDVAiDqGG-c~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprT 308 (371)
T COG0686 261 GSVIVDVAIDQGG-CFETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRT 308 (371)
T ss_pred CcEEEEEEEcCCC-ceeccccccCCCCceeecCEEEEecCCCCccccch
Confidence 9999887766654 33333555555666777777766666677655443
No 290
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.83 E-value=9.2 Score=30.59 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc---CCCCC--CCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD---GSKGH--AEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD---~~~~~--~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| .+|++++.+++..+.+++ +|.+. + +-..+ ..+.. .....+|.++-..+-. .....++
T Consensus 158 lAk~~G--~~Vi~~~~s~~~~~~~~~-----lGa~~---v-i~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~-~~~~~~~ 225 (325)
T TIGR02825 158 IAKLKG--CKVVGAAGSDEKVAYLKK-----LGFDV---A-FNYKTVKSLEETLKKASPDGYDCYFDNVGGE-FSNTVIG 225 (325)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHH-----cCCCE---E-EeccccccHHHHHHHhCCCCeEEEEECCCHH-HHHHHHH
Confidence 455555 589999999887777643 35432 1 11111 00000 0123589988655543 3466788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 226 ~l~~~G~iv~~ 236 (325)
T TIGR02825 226 QMKKFGRIAIC 236 (325)
T ss_pred HhCcCcEEEEe
Confidence 99999999975
No 291
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.69 E-value=2.7 Score=34.66 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=46.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchHHHHHhhCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVPKEILAQLK 84 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~L~ 84 (156)
+|+..|. .+|+++|.+++..+.|++ +|.+.- +.....|..+... ..+.+|.||-..+........++.|+
T Consensus 210 lak~~G~-~~Vi~~~~~~~r~~~a~~-----~Ga~~~--i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~ 281 (371)
T cd08281 210 GAVAAGA-SQVVAVDLNEDKLALARE-----LGATAT--VNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITR 281 (371)
T ss_pred HHHHcCC-CcEEEEcCCHHHHHHHHH-----cCCceE--eCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHh
Confidence 3555542 369999999998887753 354220 1110011100000 01258999876655555556788999
Q ss_pred CCcEEEEEe
Q psy14971 85 PGGRLVFHK 93 (156)
Q Consensus 85 pGGrLv~~~ 93 (156)
++|+++..-
T Consensus 282 ~~G~iv~~G 290 (371)
T cd08281 282 RGGTTVTAG 290 (371)
T ss_pred cCCEEEEEc
Confidence 999998753
No 292
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.04 E-value=11 Score=30.77 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=44.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-c-cCCCCCC--CCCCcCEEEEccCCCchHHHHHhh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-K-DGSKGHA--EEGPYDIIHLGAACIEVPKEILAQ 82 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-g-D~~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~ 82 (156)
+|+..| .+|++++.+++..+.+++. +|.+. +--.. . +..+... ....+|.++-..+. ......++.
T Consensus 178 lAk~~G--~~Vi~~~~~~~k~~~~~~~----lGa~~---vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~ 247 (348)
T PLN03154 178 LAKLHG--CYVVGSAGSSQKVDLLKNK----LGFDE---AFNYKEEPDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLN 247 (348)
T ss_pred HHHHcC--CEEEEEcCCHHHHHHHHHh----cCCCE---EEECCCcccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHH
Confidence 456665 5799999999877776543 34432 11111 1 1111000 11358988865553 344567889
Q ss_pred CCCCcEEEEE
Q psy14971 83 LKPGGRLVFH 92 (156)
Q Consensus 83 L~pGGrLv~~ 92 (156)
|++||+++..
T Consensus 248 l~~~G~iv~~ 257 (348)
T PLN03154 248 MKIHGRIAVC 257 (348)
T ss_pred hccCCEEEEE
Confidence 9999999874
No 293
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.61 E-value=2.8 Score=34.30 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=45.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..|. .+|+++|.+++..+.+++ +|.+.. +.....|..+. ......+|.|+-..+.+..-...++.|
T Consensus 195 ~ak~~G~-~~Vi~~~~~~~~~~~~~~-----~Ga~~~--i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~ 266 (358)
T TIGR03451 195 GAALAGA-SKIIAVDIDDRKLEWARE-----FGATHT--VNSSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYAR 266 (358)
T ss_pred HHHHcCC-CeEEEEcCCHHHHHHHHH-----cCCceE--EcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh
Confidence 3555542 369999999998888753 343220 11111111000 112235898887665444445567899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
++||++++.-
T Consensus 267 ~~~G~iv~~G 276 (358)
T TIGR03451 267 DLAGTVVLVG 276 (358)
T ss_pred ccCCEEEEEC
Confidence 9999998753
No 294
>KOG1331|consensus
Probab=79.47 E-value=1.8 Score=35.27 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=54.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---------HHHHhhC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---------KEILAQL 83 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---------~~l~~~L 83 (156)
|...+++.|+...++..|++. |. ..+..+|+........+||.++.-+..+++. +.+.+.|
T Consensus 64 p~~~~ig~D~c~~l~~~ak~~-----~~-----~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~l 133 (293)
T KOG1331|consen 64 PLCLIIGCDLCTGLLGGAKRS-----GG-----DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVL 133 (293)
T ss_pred CcceeeecchhhhhccccccC-----CC-----ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 445789999999888777632 22 2467789887655567899999998887654 4678999
Q ss_pred CCCcEEEEEec
Q psy14971 84 KPGGRLVFHKG 94 (156)
Q Consensus 84 ~pGGrLv~~~~ 94 (156)
+|||.+.+.+.
T Consensus 134 rpgg~~lvyvw 144 (293)
T KOG1331|consen 134 RPGGNALVYVW 144 (293)
T ss_pred cCCCceEEEEe
Confidence 99999888765
No 295
>KOG2940|consensus
Probab=79.47 E-value=2.3 Score=34.03 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---hHH---HHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE---VPK---EILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~---i~~---~l~~~L~pGG 87 (156)
-++++-+|.+-+|++.++..-.. ++. ++-..+|-......+.++|.|+...+.+. +|. .+...|||.|
T Consensus 95 vekli~~DtS~~M~~s~~~~qdp--~i~----~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 95 VEKLIMMDTSYDMIKSCRDAQDP--SIE----TSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDG 168 (325)
T ss_pred hhheeeeecchHHHHHhhccCCC--ceE----EEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCc
Confidence 36899999999999998854321 221 44556675443344678999999998874 453 4567899999
Q ss_pred EEEEEe
Q psy14971 88 RLVFHK 93 (156)
Q Consensus 88 rLv~~~ 93 (156)
.++..+
T Consensus 169 ~Fiasm 174 (325)
T KOG2940|consen 169 LFIASM 174 (325)
T ss_pred cchhHH
Confidence 998864
No 296
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.40 E-value=3.3 Score=33.34 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=45.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCC---CCCCCCcCEEEEccCCCchHHHHHhh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKG---HAEEGPYDIIHLGAACIEVPKEILAQ 82 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~---~~~~~~fD~I~i~~~~~~i~~~l~~~ 82 (156)
+|+..|. ..|++++.+++..+.+++ +|.+. + +-..+- .+. ......+|.++-..+........++.
T Consensus 182 ~ak~~G~-~~vi~~~~~~~~~~~~~~-----~ga~~---~-i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~ 251 (339)
T cd08239 182 LARALGA-EDVIGVDPSPERLELAKA-----LGADF---V-INSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEA 251 (339)
T ss_pred HHHHcCC-CEEEEECCCHHHHHHHHH-----hCCCE---E-EcCCcchHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHH
Confidence 4556553 249999999988777643 34322 1 111110 000 11223699999776655554566789
Q ss_pred CCCCcEEEEEe
Q psy14971 83 LKPGGRLVFHK 93 (156)
Q Consensus 83 L~pGGrLv~~~ 93 (156)
|+++|++++.-
T Consensus 252 l~~~G~~v~~g 262 (339)
T cd08239 252 VRPWGRLVLVG 262 (339)
T ss_pred hhcCCEEEEEc
Confidence 99999998743
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=79.23 E-value=1 Score=35.85 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCC----chHHHHHhhCCCCcEEEEEe
Q psy14971 26 VKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACI----EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 26 ~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~----~i~~~l~~~L~pGGrLv~~~ 93 (156)
-++..++|+++ +|+ ++ ++++.|...+-++. ...+-.+.+++..- ...+.+...|.|||.+++.-
T Consensus 141 s~e~V~~n~~~-~gl~~~~---v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 141 SLEEVRENFAR-YGLLDDN---VRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHHCCCC-TTTSSTT---EEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CHHHHHHHHHH-cCCCccc---EEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 35566677776 465 45 99999997654443 24566666666542 22356789999999999964
No 298
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=78.55 E-value=9.5 Score=32.05 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=34.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
+++|+|||..+ |. .++.. ..+ |+...+|+....+...++|.++++....
T Consensus 233 G~~V~AVD~g~-l~----~~L~~---~~~---V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 233 GMFVTAVDNGP-MA----QSLMD---TGQ---VEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCEEEEEechh-cC----HhhhC---CCC---EEEEeccCcccCCCCCCCCEEEEecccC
Confidence 46999999543 22 22332 245 9999999877555467899999999864
No 299
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.92 E-value=1.9 Score=35.20 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred eEEEEccCCCCCCC----CCCcCEEEEccCCC-chHHHHHhhCCCCcEEEEEe
Q psy14971 46 KNVSVKDGSKGHAE----EGPYDIIHLGAACI-EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 46 v~~~~gD~~~~~~~----~~~fD~I~i~~~~~-~i~~~l~~~L~pGGrLv~~~ 93 (156)
|.|+..|...-++. .+.||+||++.++- .+.+.+.+.++|+|+|++-.
T Consensus 202 VhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPELFQALAPDAVLVVET 254 (289)
T ss_pred EEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchHHHHHhCCCCEEEEEc
Confidence 55665555443322 36799999998765 45567899999999999854
No 300
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=77.72 E-value=9.7 Score=31.20 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+|+..| .+|+.++.+++..+.+.+ . +|.+. + +...+..........+|.++-..+.....+..++.|++|
T Consensus 199 ~Ak~~G--~~vi~~~~~~~~~~~~~~---~-~Ga~~---~-i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~ 268 (357)
T PLN02514 199 IAKAMG--HHVTVISSSDKKREEALE---H-LGADD---Y-LVSSDAAEMQEAADSLDYIIDTVPVFHPLEPYLSLLKLD 268 (357)
T ss_pred HHHHCC--CeEEEEeCCHHHHHHHHH---h-cCCcE---E-ecCCChHHHHHhcCCCcEEEECCCchHHHHHHHHHhccC
Confidence 455555 578888888776554433 3 35432 1 111111000001135898887655444445667899999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|+++..
T Consensus 269 G~iv~~ 274 (357)
T PLN02514 269 GKLILM 274 (357)
T ss_pred CEEEEE
Confidence 999884
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=77.11 E-value=0.54 Score=33.47 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred eEEEEccCCCCCCC-CCCcCEEEEccCCC-c--------hHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHAE-EGPYDIIHLGAACI-E--------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~~-~~~fD~I~i~~~~~-~--------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+++..||+.+.++. ...||+||.++=.+ . +...+.+.++|||.|.....
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 67888998765544 36899999998332 2 23467889999999998654
No 302
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.09 E-value=4.2 Score=33.10 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=44.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc-----CCC---CCCCCCCcC----EEEE
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD-----GSK---GHAEEGPYD----IIHL 68 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD-----~~~---~~~~~~~fD----~I~i 68 (156)
|.+++ +|+..| .+|++++.+++.++.+++ +|.+. + +...+ ..+ .......+| .|+-
T Consensus 179 G~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~-----~Ga~~---~-i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d 247 (349)
T TIGR03201 179 GGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG-----FGADL---T-LNPKDKSAREVKKLIKAFAKARGLRSTGWKIFE 247 (349)
T ss_pred HHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-----hCCce---E-ecCccccHHHHHHHHHhhcccCCCCCCcCEEEE
Confidence 44443 355555 579999999998887753 24321 1 11111 000 011112344 6665
Q ss_pred ccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 69 GAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 69 ~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
..+.........+.|++||+++..
T Consensus 248 ~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 248 CSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCChHHHHHHHHHHhcCCeEEEE
Confidence 544444455667899999999875
No 303
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.03 E-value=5.6 Score=32.23 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=41.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC--CCCCCCCcC-EEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK--GHAEEGPYD-IIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~--~~~~~~~fD-~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..|. ..|++++.+++..+.+++ +|.+.- +.....+..+ .......+| .||-..+....-....+.|
T Consensus 179 ~a~~~G~-~~v~~~~~~~~~~~~~~~-----~Ga~~~--i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l 250 (347)
T PRK10309 179 CAVALGA-KSVTAIDINSEKLALAKS-----LGAMQT--FNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIA 250 (347)
T ss_pred HHHHcCC-CeEEEECCCHHHHHHHHH-----cCCceE--ecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHh
Confidence 4555552 348999999998877642 243210 1101001000 011123588 4444444344445667899
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
++||++++.
T Consensus 251 ~~~G~iv~~ 259 (347)
T PRK10309 251 GPRAQLALV 259 (347)
T ss_pred hcCCEEEEE
Confidence 999999875
No 304
>KOG3045|consensus
Probab=74.69 E-value=6 Score=32.21 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=36.8
Q ss_pred eEEEEccCCCCCCCCCCcCEEEEccCCC--chH---HHHHhhCCCCcEEEEEeccC
Q psy14971 46 KNVSVKDGSKGHAEEGPYDIIHLGAACI--EVP---KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 46 v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~---~~l~~~L~pGGrLv~~~~~~ 96 (156)
-+++.+|......++.+.|+++.+-++. ++- .+..+.|++||.|.+....+
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh
Confidence 4577788877444567899988876553 333 46678999999999986543
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=74.68 E-value=2.9 Score=33.28 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=46.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCc---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIE--- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~--- 74 (156)
|.=.+.++++.+.-+.+..|.+++-.+.-++|+... .+ +++...|+.+++ |....==+|+|+-+...
T Consensus 67 GSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~---v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~d 140 (245)
T PF04378_consen 67 GSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RR---VRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKDD 140 (245)
T ss_dssp -HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S----EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STTH
T ss_pred CCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---Cc---cEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCchH
Confidence 444567778888899999999999999888887652 35 999999997753 22222348999887542
Q ss_pred ---hHHHHHhhCC--CCcEEEE
Q psy14971 75 ---VPKEILAQLK--PGGRLVF 91 (156)
Q Consensus 75 ---i~~~l~~~L~--pGGrLv~ 91 (156)
+.+.+.+.++ +.|..++
T Consensus 141 y~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 141 YQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEE
Confidence 2233333333 5776555
No 306
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.64 E-value=4.5 Score=33.50 Aligned_cols=68 Identities=21% Similarity=0.076 Sum_probs=50.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchHH--------HHHhhCCCC
Q psy14971 17 VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVPK--------EILAQLKPG 86 (156)
Q Consensus 17 V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~~--------~l~~~L~pG 86 (156)
-.-.+.++...|.+++|+++ |.++++|..+.+. +.+..|+.++.-+-..+++ .+.+-+.+|
T Consensus 289 ~lP~yl~~~~YEsir~n~~R---------V~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~g 359 (414)
T COG5379 289 ALPAYLDEGVYESIRQNLRR---------VAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAG 359 (414)
T ss_pred CCChhhchhhHHHHHhhhhh---------eeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCC
Confidence 35678899999999999875 7888999877554 4678999988776665552 344556778
Q ss_pred cEEEEEe
Q psy14971 87 GRLVFHK 93 (156)
Q Consensus 87 GrLv~~~ 93 (156)
.++|+-.
T Consensus 360 A~VifRt 366 (414)
T COG5379 360 ARVIFRT 366 (414)
T ss_pred cEEEEec
Confidence 8877743
No 307
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.51 E-value=29 Score=27.97 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=46.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. ..|++++.+++..+.+++ +|.+. ++..+-.. .......+|.++-..+-.......+
T Consensus 185 lak~~G~-~~v~~~~~~~~~~~~~~~-----~g~~~-----~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~ 253 (351)
T cd08285 185 GARLRGA-GRIIAVGSRPNRVELAKE-----YGATD-----IVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQAL 253 (351)
T ss_pred HHHHcCC-CeEEEEeCCHHHHHHHHH-----cCCce-----EecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHH
Confidence 4555553 469999999988777763 35422 11111000 0112246999987665444556778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 254 ~~l~~~G~~v~~g 266 (351)
T cd08285 254 KVLKPGGTISNVN 266 (351)
T ss_pred HHhhcCCEEEEec
Confidence 8999999998753
No 308
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=74.50 E-value=5.5 Score=31.44 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=24.0
Q ss_pred chHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHh
Q psy14971 2 GDLNVIVGIKGE--RALVLILNHYMKVKSKNQNNKK 35 (156)
Q Consensus 2 G~la~la~l~g~--~g~V~avD~~~~~~~~A~~~l~ 35 (156)
|||-....++.+ -..|++-|+|+++++.|++|+.
T Consensus 63 gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 63 GYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp SHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 555543334433 3589999999999999999974
No 309
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=73.73 E-value=10 Score=31.52 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHhcCCCCEEEEEeCCHHH-HHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 7 IVGIKGERALVLILNHYMKV-KSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~-~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
+|+..| .+|++++.+++. .+.+ +. +|.+. + +...+........+.+|.++-..+.........+.|++
T Consensus 197 ~Ak~~G--a~Vi~~~~~~~~~~~~a----~~-lGa~~---~-i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~~~~l~~ 265 (375)
T PLN02178 197 IGKAFG--LRVTVISRSSEKEREAI----DR-LGADS---F-LVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKV 265 (375)
T ss_pred HHHHcC--CeEEEEeCChHHhHHHH----Hh-CCCcE---E-EcCcCHHHHHHhhCCCcEEEECCCcHHHHHHHHHhhcC
Confidence 456665 579999887553 3333 23 45432 1 11111000000012489988766655445566789999
Q ss_pred CcEEEEE
Q psy14971 86 GGRLVFH 92 (156)
Q Consensus 86 GGrLv~~ 92 (156)
||+++..
T Consensus 266 ~G~iv~v 272 (375)
T PLN02178 266 SGKLVAL 272 (375)
T ss_pred CCEEEEE
Confidence 9999975
No 310
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.46 E-value=9.7 Score=29.67 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=49.4
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
..|+++....+|+-+|++|.|-.... +| |.|..+ .. +..+.+|.|+=.-+...+.+..++.++|
T Consensus 59 ~~a~~Ls~~~~vtv~Di~p~~r~~lp---------~~---v~Fr~~--~~--~~~G~~DlivDlTGlGG~~Pe~L~~fnp 122 (254)
T COG4017 59 YTAQMLSKADKVTVVDIHPFMRGFLP---------NN---VKFRNL--LK--FIRGEVDLIVDLTGLGGIEPEFLAKFNP 122 (254)
T ss_pred HHHHHhcccceEEEecCCHHHHhcCC---------CC---ccHhhh--cC--CCCCceeEEEeccccCCCCHHHHhccCC
Confidence 56888888899999999998642211 24 666654 22 2347799999888888887778888888
Q ss_pred CcEEE
Q psy14971 86 GGRLV 90 (156)
Q Consensus 86 GGrLv 90 (156)
+-.+|
T Consensus 123 ~vfiV 127 (254)
T COG4017 123 KVFIV 127 (254)
T ss_pred ceEEE
Confidence 75544
No 311
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=73.25 E-value=11 Score=30.12 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=40.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~ 74 (156)
|-++.-++..| ...|.++|+++...+.-+.|... . ++.+|..+.... ...+|.++.+.+|..
T Consensus 11 Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~---------~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 11 GGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN---------K-LIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred chHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC---------C-CccCccccCchhhcCCCCCEEEeCCCChh
Confidence 33443344445 35789999999999888887643 1 334555443322 356999999998864
No 312
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=73.05 E-value=6.6 Score=31.06 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---HHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---EILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---~l~~~L 83 (156)
-.+.-|+..+|+++|++++.++.|++ +|+-. -...+ .+. -..+|.|++..+...+.+ .+...|
T Consensus 4 aL~~~g~~~~v~g~d~~~~~~~~a~~-----~g~~~-----~~~~~-~~~---~~~~DlvvlavP~~~~~~~l~~~~~~~ 69 (258)
T PF02153_consen 4 ALRKAGPDVEVYGYDRDPETLEAALE-----LGIID-----EASTD-IEA---VEDADLVVLAVPVSAIEDVLEEIAPYL 69 (258)
T ss_dssp HHHHTTTTSEEEEE-SSHHHHHHHHH-----TTSSS-----EEESH-HHH---GGCCSEEEE-S-HHHHHHHHHHHHCGS
T ss_pred HHHhCCCCeEEEEEeCCHHHHHHHHH-----CCCee-----eccCC-HhH---hcCCCEEEEcCCHHHHHHHHHHhhhhc
Confidence 34455777899999999998877763 24422 11111 111 134699999888776554 444556
Q ss_pred CCCcEEEEEec
Q psy14971 84 KPGGRLVFHKG 94 (156)
Q Consensus 84 ~pGGrLv~~~~ 94 (156)
++|. +|+.++
T Consensus 70 ~~~~-iv~Dv~ 79 (258)
T PF02153_consen 70 KPGA-IVTDVG 79 (258)
T ss_dssp -TTS-EEEE--
T ss_pred CCCc-EEEEeC
Confidence 6654 455444
No 313
>PLN02740 Alcohol dehydrogenase-like
Probab=72.88 E-value=17 Score=30.06 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc-----CCCC---CCCCCCcCEEEEccCCCchHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD-----GSKG---HAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD-----~~~~---~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
+|+..|. .+|+++|.+++.++.|++ +|.+. ++.-+ ..+. ... +.+|.|+-..+.......
T Consensus 217 ~ak~~G~-~~Vi~~~~~~~r~~~a~~-----~Ga~~-----~i~~~~~~~~~~~~v~~~~~-~g~dvvid~~G~~~~~~~ 284 (381)
T PLN02740 217 GARARGA-SKIIGVDINPEKFEKGKE-----MGITD-----FINPKDSDKPVHERIREMTG-GGVDYSFECAGNVEVLRE 284 (381)
T ss_pred HHHHCCC-CcEEEEcCChHHHHHHHH-----cCCcE-----EEecccccchHHHHHHHHhC-CCCCEEEECCCChHHHHH
Confidence 3455541 369999999998888853 35422 11111 0000 111 269999887776555566
Q ss_pred HHhhCCCC-cEEEEE
Q psy14971 79 ILAQLKPG-GRLVFH 92 (156)
Q Consensus 79 l~~~L~pG-GrLv~~ 92 (156)
....+++| |++++.
T Consensus 285 a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 285 AFLSTHDGWGLTVLL 299 (381)
T ss_pred HHHhhhcCCCEEEEE
Confidence 67788897 998774
No 314
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=72.65 E-value=34 Score=27.27 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---C---CCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---G---HAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~---~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..| .+|++++.+++..+.+++ +|.+. ++..+..+ . ......+|.++-..+.... ...+
T Consensus 163 ~a~~~G--~~vi~~~~~~~~~~~~~~-----~g~~~-----~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~-~~~~ 229 (324)
T cd08291 163 LCKADG--IKVINIVRRKEQVDLLKK-----IGAEY-----VLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLT-GQIL 229 (324)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHH-----cCCcE-----EEECCCccHHHHHHHHhCCCCCcEEEECCCcHHH-HHHH
Confidence 455555 579999999988777754 25322 22111111 0 1112358988865554333 4457
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 230 ~~l~~~G~~v~~g 242 (324)
T cd08291 230 LAMPYGSTLYVYG 242 (324)
T ss_pred HhhCCCCEEEEEE
Confidence 8899999998864
No 315
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.44 E-value=12 Score=30.86 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=22.8
Q ss_pred CcCEEEEccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 62 PYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 62 ~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
.+|.+|-..+....-...++.|++||+++..
T Consensus 247 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 247 TMDYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 4899886655433444578899999999875
No 316
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.23 E-value=30 Score=27.85 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=43.4
Q ss_pred HHHhcCCCCE-EEEEeCCHHHHHHHHHHHhhhcCCCCccceE-EEEccC------CCCCCCCCCcCEEEEccCCCchHHH
Q psy14971 7 IVGIKGERAL-VLILNHYMKVKSKNQNNKKLNIKQNRKSFKN-VSVKDG------SKGHAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 7 la~l~g~~g~-V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~-~~~gD~------~~~~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
+|+..| .+ |++++.+++..+.+++ + |.+. +- ...-+. ...+.....+|.|+-..+.......
T Consensus 181 lak~~G--~~~v~~~~~~~~~~~~~~~-~----g~~~---vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~ 250 (343)
T cd05285 181 VAKAFG--ATKVVVTDIDPSRLEFAKE-L----GATH---TVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQT 250 (343)
T ss_pred HHHHcC--CcEEEEECCCHHHHHHHHH-c----CCcE---EeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHH
Confidence 355554 44 8888888887766643 2 3222 11 000010 0001122459999987665435566
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
.++.|+++|+++..
T Consensus 251 ~~~~l~~~G~~v~~ 264 (343)
T cd05285 251 AIYATRPGGTVVLV 264 (343)
T ss_pred HHHHhhcCCEEEEE
Confidence 78999999999864
No 317
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=71.49 E-value=33 Score=30.28 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE---ccCCCC----------------CCC-CCCcCEEE
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV---KDGSKG----------------HAE-EGPYDIIH 67 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~---gD~~~~----------------~~~-~~~fD~I~ 67 (156)
+..+| +.|+.+|.+++.++.+++ + |.+. +.+-. |+...+ ..+ ...+|.||
T Consensus 183 ak~lG--A~V~v~d~~~~rle~a~~-l----Ga~~---v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI 252 (511)
T TIGR00561 183 ANSLG--AIVRAFDTRPEVKEQVQS-M----GAEF---LELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIII 252 (511)
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHH-c----CCeE---EeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 44555 579999999998777764 2 3221 22211 111111 111 24699998
Q ss_pred EccCCC---c---hHHHHHhhCCCCcEEEEEeccCC
Q psy14971 68 LGAACI---E---VPKEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 68 i~~~~~---~---i~~~l~~~L~pGGrLv~~~~~~~ 97 (156)
.++..+ . +.+...+.+|||+.+|=.....+
T Consensus 253 ~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~G 288 (511)
T TIGR00561 253 TTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQG 288 (511)
T ss_pred ECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCC
Confidence 888322 2 45677999999999775554443
No 318
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=71.46 E-value=28 Score=28.83 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=45.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc-CCC---CCCCCCCcCEEEEccCC----------
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD-GSK---GHAEEGPYDIIHLGAAC---------- 72 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD-~~~---~~~~~~~fD~I~i~~~~---------- 72 (156)
+|+..|. .+|++++.+++..+.+++... ... +.....+ ..+ .+.....+|.++-..+-
T Consensus 203 la~~~g~-~~vi~~~~~~~~~~~~~~~~~----~~v---i~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~ 274 (386)
T cd08283 203 SAKLLGA-ERVIAIDRVPERLEMARSHLG----AET---INFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKA 274 (386)
T ss_pred HHHHcCC-CEEEEEcCCHHHHHHHHHcCC----cEE---EcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccc
Confidence 4555553 469999999999988886421 111 1111111 100 11122358988775431
Q ss_pred -----------CchHHHHHhhCCCCcEEEEEe
Q psy14971 73 -----------IEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 -----------~~i~~~l~~~L~pGGrLv~~~ 93 (156)
........+.|+++|+++..-
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 275 EQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 123345678999999999864
No 319
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=71.33 E-value=11 Score=33.81 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=35.3
Q ss_pred eEEEEccCCCCCCCC-CCcCEEEEccCCC-c--------hHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHAEE-GPYDIIHLGAACI-E--------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~~~-~~fD~I~i~~~~~-~--------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+++..||+.+.++.. ..+|++|+++=.+ . +...+.+.++|||+++....
T Consensus 149 l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 149 LDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred EEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 567889987655543 5699999997332 2 23456789999999997653
No 320
>PLN02827 Alcohol dehydrogenase-like
Probab=70.99 E-value=11 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=44.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc----CCCCCC--CCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD----GSKGHA--EEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD----~~~~~~--~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. ..|+++|.+++..+.|++ +|.+. + +-..+ ..+... ..+.+|.|+-..+........+
T Consensus 212 lak~~G~-~~vi~~~~~~~~~~~a~~-----lGa~~---~-i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l 281 (378)
T PLN02827 212 GAKLRGA-SQIIGVDINPEKAEKAKT-----FGVTD---F-INPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTAL 281 (378)
T ss_pred HHHHcCC-CeEEEECCCHHHHHHHHH-----cCCcE---E-EcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHH
Confidence 4555552 369999999988777743 35422 1 11111 000000 0125899987666554555678
Q ss_pred hhCCCC-cEEEEE
Q psy14971 81 AQLKPG-GRLVFH 92 (156)
Q Consensus 81 ~~L~pG-GrLv~~ 92 (156)
+.|++| |++++.
T Consensus 282 ~~l~~g~G~iv~~ 294 (378)
T PLN02827 282 QSCSDGWGLTVTL 294 (378)
T ss_pred HhhccCCCEEEEE
Confidence 889998 999874
No 321
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=70.49 E-value=36 Score=26.25 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=44.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
+|...|. .+|++++.+++..+.+++. | .+. +.....+ ......+|.|+-............+.|++
T Consensus 116 ~a~~~g~-~~vi~~~~~~~~~~~~~~~-----g~~~~---~~~~~~~----~~~~~~~d~vl~~~~~~~~~~~~~~~l~~ 182 (277)
T cd08255 116 LAKAAGA-REVVGVDPDAARRELAEAL-----GPADP---VAADTAD----EIGGRGADVVIEASGSPSALETALRLLRD 182 (277)
T ss_pred HHHHcCC-CcEEEECCCHHHHHHHHHc-----CCCcc---ccccchh----hhcCCCCCEEEEccCChHHHHHHHHHhcC
Confidence 3455553 2499999998887766642 3 111 1111111 11234699999765544455667889999
Q ss_pred CcEEEEEe
Q psy14971 86 GGRLVFHK 93 (156)
Q Consensus 86 GGrLv~~~ 93 (156)
+|+++..-
T Consensus 183 ~g~~~~~g 190 (277)
T cd08255 183 RGRVVLVG 190 (277)
T ss_pred CcEEEEEe
Confidence 99998753
No 322
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.60 E-value=34 Score=27.51 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=45.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEE-EEc-cCCC---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNV-SVK-DGSK---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~-~~g-D~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| .+|+++..+++..+.+++.+ |.+. +-- ... +..+ ... ...+|.|+-..+. ......++
T Consensus 171 lAk~~G--~~Vi~~~~~~~~~~~~~~~l----Ga~~---vi~~~~~~~~~~~i~~~~-~~gvd~v~d~~g~-~~~~~~~~ 239 (338)
T cd08295 171 LAKLKG--CYVVGSAGSDEKVDLLKNKL----GFDD---AFNYKEEPDLDAALKRYF-PNGIDIYFDNVGG-KMLDAVLL 239 (338)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHHhc----CCce---eEEcCCcccHHHHHHHhC-CCCcEEEEECCCH-HHHHHHHH
Confidence 455555 57999999998888777543 4332 211 011 1100 011 1468998865554 34456789
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 240 ~l~~~G~iv~~ 250 (338)
T cd08295 240 NMNLHGRIAAC 250 (338)
T ss_pred HhccCcEEEEe
Confidence 99999999875
No 323
>PRK11524 putative methyltransferase; Provisional
Probab=68.74 E-value=10 Score=30.45 Aligned_cols=33 Identities=3% Similarity=-0.071 Sum_probs=26.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL 36 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~ 36 (156)
|-.++.|..++ .+.+|+|++++-.+.|+++++.
T Consensus 220 GTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 220 FTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 44445666775 7999999999999999999864
No 324
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=68.56 E-value=16 Score=30.71 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=44.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCC---CCCCCCcCEEEEccCCC---------
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKG---HAEEGPYDIIHLGAACI--------- 73 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~---~~~~~~fD~I~i~~~~~--------- 73 (156)
+|+..|. ..|++.|.+++.++.|++ +|.+. +..... +..+. ......+|.++-..+.+
T Consensus 204 lAk~~Ga-~~vi~~d~~~~r~~~a~~-----~Ga~~---v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~ 274 (393)
T TIGR02819 204 SAQLLGA-AVVIVGDLNPARLAQARS-----FGCET---VDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGK 274 (393)
T ss_pred HHHHcCC-ceEEEeCCCHHHHHHHHH-----cCCeE---EecCCcccHHHHHHHHcCCCCCcEEEECCCCcccccccccc
Confidence 4555553 346677888888877764 24311 111110 11010 11123589998766654
Q ss_pred -----chHHHHHhhCCCCcEEEEEe
Q psy14971 74 -----EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -----~i~~~l~~~L~pGGrLv~~~ 93 (156)
...+...+.+++||++++.-
T Consensus 275 ~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 275 KEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred ccchHHHHHHHHHHhhCCCEEEEee
Confidence 24556688999999999853
No 325
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.93 E-value=17 Score=31.09 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=41.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-HHHHHhhCCCCcEEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV-PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-~~~l~~~L~pGGrLv~~ 92 (156)
+++|+.+|+++...+.|++ +|... +. -+ +.. ...|.|+...+...+ ....++.+++||+++..
T Consensus 225 Ga~ViV~d~d~~R~~~A~~-----~G~~~---~~---~~--e~v---~~aDVVI~atG~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 225 GARVIVTEVDPICALQAAM-----EGYEV---MT---ME--EAV---KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CCEEEEEECChhhHHHHHh-----cCCEE---cc---HH--HHH---cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 3689999999998777753 35421 11 11 111 247999887665554 44568899999999764
No 326
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=67.74 E-value=19 Score=30.21 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=41.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----c-hHHHHHhhCCCCcE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----E-VPKEILAQLKPGGR 88 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~-i~~~l~~~L~pGGr 88 (156)
.+|+.+|++++.++.+...+ +. . +.....+..+.......+|.|+.+...+ . +.....+.+++|+.
T Consensus 191 a~V~v~d~~~~~~~~l~~~~----g~-~---v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~v 262 (370)
T TIGR00518 191 ATVTILDINIDRLRQLDAEF----GG-R---IHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAV 262 (370)
T ss_pred CeEEEEECCHHHHHHHHHhc----Cc-e---eEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCE
Confidence 58999999988766554433 21 1 2211111000001124589999876332 2 34667788999987
Q ss_pred EEEEeccCC
Q psy14971 89 LVFHKGLHN 97 (156)
Q Consensus 89 Lv~~~~~~~ 97 (156)
++-.....+
T Consensus 263 IvDva~d~G 271 (370)
T TIGR00518 263 IVDVAIDQG 271 (370)
T ss_pred EEEEecCCC
Confidence 776554433
No 327
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=67.59 E-value=4 Score=33.63 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEccCCCchH---HHHHhhCCCCcEEEEEe
Q psy14971 65 IIHLGAACIEVP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 65 ~I~i~~~~~~i~---~~l~~~L~pGGrLv~~~ 93 (156)
+|+++--+..+. +.+.+.|+|||||++..
T Consensus 213 RI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIs 244 (314)
T COG0275 213 RIYVNDELEELEEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred eeeehhHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 455555554444 45688999999999975
No 328
>KOG2360|consensus
Probab=66.90 E-value=12 Score=31.91 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=50.1
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCC-CCCcCEEEEccCCC
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAE-EGPYDIIHLGAACI 73 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~-~~~fD~I~i~~~~~ 73 (156)
.+|.+....++++|.|.+.+.++.-++-+.. .|.++ ++.+.+|+... .++ -...-.|+++.+|+
T Consensus 230 H~a~i~~n~gki~afe~d~~r~~tl~~~l~~-ag~~~---~~~~~~df~~t~~~~~~~~v~~iL~DpscS 295 (413)
T KOG2360|consen 230 HLAAIMRNQGKIYAFERDAKRAATLRKLLKI-AGVSI---VESVEGDFLNTATPEKFRDVTYILVDPSCS 295 (413)
T ss_pred hHHHHhhccCCcchhhhhhHHHHHHHHHHHH-cCCCc---cccccccccCCCCcccccceeEEEeCCCCC
Confidence 4677777789999999999999999999988 49888 88889998763 222 23456788887775
No 329
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.73 E-value=33 Score=22.89 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=50.3
Q ss_pred HHHhcCCCC-EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C--CCCCcCEEEEccCCCchH---HH
Q psy14971 7 IVGIKGERA-LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A--EEGPYDIIHLGAACIEVP---KE 78 (156)
Q Consensus 7 la~l~g~~g-~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~--~~~~fD~I~i~~~~~~i~---~~ 78 (156)
+++.+...+ .|+.+|.+++..+.+++. + +.++.||+.+.. . .....|.+++...-...- -.
T Consensus 13 i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~ 81 (116)
T PF02254_consen 13 IAEQLKEGGIDVVVIDRDPERVEELREE-----G------VEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIAL 81 (116)
T ss_dssp HHHHHHHTTSEEEEEESSHHHHHHHHHT-----T------SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEECCcHHHHHHHhc-----c------cccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHHH
Confidence 343333345 899999999987666532 2 568889987531 1 235689899877654322 23
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|..++++-...
T Consensus 82 ~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 82 LARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHTTTSEEEEEESS
T ss_pred HHHHHCCCCeEEEEECC
Confidence 45677888898887754
No 330
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.22 E-value=27 Score=27.88 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=48.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccCCCCCCC--CCCcCEEEEccCCCc---h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDGSKGHAE--EGPYDIIHLGAACIE---V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~~~~~~~--~~~fD~I~i~~~~~~---i 75 (156)
||.-++.+. | ..+|+|+|..-..+.- .++.. ++ |.... -|+....++ .+..|.++++.+.-. +
T Consensus 92 GFTd~lLq~-g-Ak~VyavDVG~~Ql~~---kLR~d---~r---V~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~~i 160 (245)
T COG1189 92 GFTDVLLQR-G-AKHVYAVDVGYGQLHW---KLRND---PR---VIVLERTNVRYLTPEDFTEKPDLIVIDVSFISLKLI 160 (245)
T ss_pred cHHHHHHHc-C-CcEEEEEEccCCccCH---hHhcC---Cc---EEEEecCChhhCCHHHcccCCCeEEEEeehhhHHHH
Confidence 555566544 2 2799999987533221 12110 12 33333 233222121 246899999987654 4
Q ss_pred HHHHHhhCCCCcEEEEEecc
Q psy14971 76 PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~ 95 (156)
-+.+...|+++|-++..+-+
T Consensus 161 Lp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 161 LPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred HHHHHHhcCCCceEEEEecc
Confidence 46778899999999998753
No 331
>PRK08324 short chain dehydrogenase; Validated
Probab=66.02 E-value=27 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=39.0
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-++.+.+.+.. . .+ +.++.+|..+... ..+++|.||.+++.
T Consensus 442 L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-~--~~---v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 442 LAAEGACVVLADLDEEAAEAAAAELGG-P--DR---ALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHCcCEEEEEeCCHHHHHHHHHHHhc-c--Cc---EEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344457999999999877766655543 1 35 8888888764210 12468999998874
No 332
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=65.80 E-value=13 Score=29.41 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=43.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc--cCCC---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK--DGSK---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g--D~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| .+|++++.+++..+.+++ +|.+. + +-.. |..+ ... ...+|.|+-..+- ......++
T Consensus 163 lA~~~G--~~vi~~~~s~~~~~~l~~-----~Ga~~---v-i~~~~~~~~~~v~~~~-~~gvd~vld~~g~-~~~~~~~~ 229 (329)
T cd08294 163 IAKIKG--CKVIGCAGSDDKVAWLKE-----LGFDA---V-FNYKTVSLEEALKEAA-PDGIDCYFDNVGG-EFSSTVLS 229 (329)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHH-----cCCCE---E-EeCCCccHHHHHHHHC-CCCcEEEEECCCH-HHHHHHHH
Confidence 455655 579999999887777654 24422 1 1111 1000 011 1458988865544 44456788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 230 ~l~~~G~iv~~ 240 (329)
T cd08294 230 HMNDFGRVAVC 240 (329)
T ss_pred hhccCCEEEEE
Confidence 99999999874
No 333
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=65.29 E-value=7.5 Score=32.92 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchH--------HHHHhhCCCCcEEEEEec
Q psy14971 39 KQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVP--------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 39 g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~--------~~l~~~L~pGGrLv~~~~ 94 (156)
++++ |++++++..+.+. +.+++|+.++.-...-++ ..+.+.++||||++.=..
T Consensus 273 ~~dr---v~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 273 RLDR---VRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCe---EEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 4556 9999998876443 247899988865544333 356788999999998543
No 334
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=64.53 E-value=43 Score=27.11 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=44.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc-CC------CCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD-GS------KGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD-~~------~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+|+..|. .+|++++.+++..+.++ . +|.+. +--.... .. ........+|.++-..+........
T Consensus 196 lak~~G~-~~v~~~~~~~~~~~~~~----~-~g~~~---vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~ 266 (361)
T cd08231 196 AAKLAGA-RRVIVIDGSPERLELAR----E-FGADA---TIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEG 266 (361)
T ss_pred HHHHcCC-CeEEEEcCCHHHHHHHH----H-cCCCe---EEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHH
Confidence 4555552 38999999888776654 3 35432 1111110 00 0011224699998765544444566
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
++.|+++|+++..-
T Consensus 267 ~~~l~~~G~~v~~g 280 (361)
T cd08231 267 LELLRRGGTYVLVG 280 (361)
T ss_pred HHHhccCCEEEEEc
Confidence 78999999998753
No 335
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=64.49 E-value=7.5 Score=34.10 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=24.8
Q ss_pred CCCcCEEEEccCCCc-hH------HHHHhhCCCCcEEEEEec
Q psy14971 60 EGPYDIIHLGAACIE-VP------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 60 ~~~fD~I~i~~~~~~-i~------~~l~~~L~pGGrLv~~~~ 94 (156)
...||.|++...... .+ -++-+.|+|||.+|....
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 367999999776531 11 245689999999988644
No 336
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=63.91 E-value=23 Score=28.37 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|+.++.+++..+.+++ +|.+. ++...-.+ .......+|.++-..+........++.|
T Consensus 182 ~a~~~G--~~vi~~~~~~~~~~~~~~-----~g~~~-----~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l 249 (333)
T cd08296 182 YAAKMG--FRTVAISRGSDKADLARK-----LGAHH-----YIDTSKEDVAEALQELGGAKLILATAPNAKAISALVGGL 249 (333)
T ss_pred HHHHCC--CeEEEEeCChHHHHHHHH-----cCCcE-----EecCCCccHHHHHHhcCCCCEEEECCCchHHHHHHHHHc
Confidence 345554 579999999887776642 24321 11111000 0111135899986543344555678899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
+++|+++..-
T Consensus 250 ~~~G~~v~~g 259 (333)
T cd08296 250 APRGKLLILG 259 (333)
T ss_pred ccCCEEEEEe
Confidence 9999998754
No 337
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.57 E-value=57 Score=27.63 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=45.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHH-HHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSK-NQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-----V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~-A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----i 75 (156)
|-|++-....++ +++ .|.-+.+. .++|++++ |++.. .+++. +..+.++ ..+|.|++--+... .
T Consensus 56 Gal~~~l~~~~~----~~~-~ds~~~~~~~~~n~~~n-~~~~~-~~~~~--~~~~~~~--~~~d~vl~~~PK~~~~l~~~ 124 (378)
T PRK15001 56 GALSCALAEHKP----YSI-GDSYISELATRENLRLN-GIDES-SVKFL--DSTADYP--QQPGVVLIKVPKTLALLEQQ 124 (378)
T ss_pred hHHHHHHHhCCC----Cee-ehHHHHHHHHHHHHHHc-CCCcc-cceee--ccccccc--CCCCEEEEEeCCCHHHHHHH
Confidence 556664443333 233 34444444 45688885 66420 04444 3333334 45899999777653 1
Q ss_pred HHHHHhhCCCCcEEEEE
Q psy14971 76 PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~ 92 (156)
-..+...|.||+.+++.
T Consensus 125 l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 125 LRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHhhCCCCCEEEEE
Confidence 23567799999997654
No 338
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=63.06 E-value=16 Score=29.94 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC---CC---CCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG---SK---GHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~---~~---~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. .+|++++.+++..+.+++ +|.+. +--...+. .+ .... ..+|.|+-..+........+
T Consensus 203 ~a~~~G~-~~Vi~~~~~~~~~~~~~~-----~ga~~---~i~~~~~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~ 272 (365)
T cd08277 203 GAKIAGA-SRIIGVDINEDKFEKAKE-----FGATD---FINPKDSDKPVSEVIREMTG-GGVDYSFECTGNADLMNEAL 272 (365)
T ss_pred HHHHcCC-CeEEEEeCCHHHHHHHHH-----cCCCc---EeccccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHH
Confidence 4555552 379999999998887753 24322 11011000 00 0112 35899987655444445667
Q ss_pred hhCCCC-cEEEEEe
Q psy14971 81 AQLKPG-GRLVFHK 93 (156)
Q Consensus 81 ~~L~pG-GrLv~~~ 93 (156)
+.|+++ |+++..-
T Consensus 273 ~~l~~~~G~~v~~g 286 (365)
T cd08277 273 ESTKLGWGVSVVVG 286 (365)
T ss_pred HhcccCCCEEEEEc
Confidence 888885 9998854
No 339
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=63.00 E-value=22 Score=28.86 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
+.+|+.+|++++..+.++ . +|... +.+ .+..+ ....+|.||.+.+..-+.+..++.+++|+.++=..
T Consensus 175 Ga~V~v~~r~~~~~~~~~----~-~G~~~---~~~--~~l~~---~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 175 GANVTVGARKSAHLARIT----E-MGLSP---FHL--SELAE---EVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCEEEEEECCHHHHHHHH----H-cCCee---ecH--HHHHH---HhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEc
Confidence 469999999987544443 3 34321 111 11111 12458999998765556677788899977655433
No 340
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.33 E-value=64 Score=24.14 Aligned_cols=78 Identities=18% Similarity=0.046 Sum_probs=48.8
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---------C-CCCCcCEEEEccCCCch----
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---------A-EEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---------~-~~~~fD~I~i~~~~~~i---- 75 (156)
+...+..|+.++++++-.+...+.+.. . .+ +.++.+|..+.. . ..+..|.++.+++....
T Consensus 25 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~ 98 (238)
T PRK05786 25 ALKEGAQVCINSRNENKLKRMKKTLSK-Y--GN---IHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVGGYVEDTVE 98 (238)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-c--CC---eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcCCCcCCCchH
Confidence 334567999999998877665555443 1 25 888888876421 0 02457999888764210
Q ss_pred -------------------HHHHHhhCCCCcEEEEEe
Q psy14971 76 -------------------PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 -------------------~~~l~~~L~pGGrLv~~~ 93 (156)
.+.+.+.++++|++++..
T Consensus 99 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 99 EFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 123455667788887754
No 341
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=61.91 E-value=70 Score=25.30 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+++..| .+|+.++.+++..+.++ . +|.+. ++..+ + . ....+|.++...+.....+..++.|+++
T Consensus 186 la~~~g--~~v~~~~~~~~~~~~~~----~-~g~~~-----~~~~~--~-~-~~~~vD~vi~~~~~~~~~~~~~~~l~~~ 249 (329)
T cd08298 186 IARYQG--AEVFAFTRSGEHQELAR----E-LGADW-----AGDSD--D-L-PPEPLDAAIIFAPVGALVPAALRAVKKG 249 (329)
T ss_pred HHHHCC--CeEEEEcCChHHHHHHH----H-hCCcE-----EeccC--c-c-CCCcccEEEEcCCcHHHHHHHHHHhhcC
Confidence 344444 68888888876655553 2 24321 11111 1 0 1245898887544444556678999999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|+++..
T Consensus 250 G~~v~~ 255 (329)
T cd08298 250 GRVVLA 255 (329)
T ss_pred CEEEEE
Confidence 999963
No 342
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=61.73 E-value=13 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.++-...........++.|+++|+++..-
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEc
Confidence 458999886444445566788999999997753
No 343
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=61.60 E-value=14 Score=29.81 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCchHHHHHhhCC
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEVPKEILAQLK 84 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i~~~l~~~L~ 84 (156)
|+..|. .+|++++.+++..+.+++ +|.+.. +.....+..+. ......+|.++-..+.....+..++.|+
T Consensus 192 a~~~G~-~~v~~~~~~~~~~~~~~~-----~ga~~~--i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~ 263 (351)
T cd08233 192 LKAAGA-SKIIVSEPSEARRELAEE-----LGATIV--LDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALR 263 (351)
T ss_pred HHHcCC-CEEEEECCCHHHHHHHHH-----hCCCEE--ECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcc
Confidence 444441 379999999888877753 243210 00011111000 1112359999987665444556688999
Q ss_pred CCcEEEEEe
Q psy14971 85 PGGRLVFHK 93 (156)
Q Consensus 85 pGGrLv~~~ 93 (156)
++|+++..-
T Consensus 264 ~~G~~v~~g 272 (351)
T cd08233 264 PRGTAVNVA 272 (351)
T ss_pred CCCEEEEEc
Confidence 999988753
No 344
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=61.28 E-value=28 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=39.9
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC------------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH------------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~------------~~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-++...+.++. .+..+ +.++.+|..... ...++.|.++.+++.
T Consensus 32 l~~~G~~Vi~~~r~~~~~~~~~~~l~~-~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 32 YARHGATVILLGRTEEKLEAVYDEIEA-AGGPQ---PAIIPLDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHCCCcEEEEeCCHHHHHHHHHHHHh-cCCCC---ceEEEecccCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 444456999999998877776666665 34445 778888875311 112578999998764
No 345
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.12 E-value=9.8 Score=31.26 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ ||+..|. .++++-.+++-.+.+++ +|.+.- +.....|..+.. .....+|.|+-..+-....+
T Consensus 156 G~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~-----lGAd~v--i~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~ 226 (326)
T COG0604 156 GSAAIQLAKALGA--TVVAVVSSSEKLELLKE-----LGADHV--INYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAA 226 (326)
T ss_pred HHHHHHHHHHcCC--cEEEEecCHHHHHHHHh-----cCCCEE--EcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHH
Confidence 33444 5666653 66666666655544443 343220 222222222211 12246999998777766654
Q ss_pred HHHhhCCCCcEEEEEeccC
Q psy14971 78 EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~ 96 (156)
....|+++|+++..-...
T Consensus 227 -~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 227 -SLAALAPGGRLVSIGALS 244 (326)
T ss_pred -HHHHhccCCEEEEEecCC
Confidence 678999999999976543
No 346
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.36 E-value=25 Score=28.85 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC----CCCC--CCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG----SKGH--AEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~----~~~~--~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. .+|++++.+++.++.+++ +|.+. + +-..+. .+.. ...+.+|.|+-..+.........
T Consensus 205 ~ak~~G~-~~vi~~~~~~~~~~~~~~-----lGa~~---~-i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~ 274 (368)
T cd08300 205 GAKAAGA-SRIIGIDINPDKFELAKK-----FGATD---C-VNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAAL 274 (368)
T ss_pred HHHHcCC-CeEEEEeCCHHHHHHHHH-----cCCCE---E-EcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHH
Confidence 4555552 379999999998877753 35432 1 111110 0000 01136899987665444445667
Q ss_pred hhCCCC-cEEEEEe
Q psy14971 81 AQLKPG-GRLVFHK 93 (156)
Q Consensus 81 ~~L~pG-GrLv~~~ 93 (156)
+.|+++ |+++..-
T Consensus 275 ~~l~~~~G~~v~~g 288 (368)
T cd08300 275 EACHKGWGTSVIIG 288 (368)
T ss_pred HhhccCCCeEEEEc
Confidence 889887 9998753
No 347
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.45 E-value=16 Score=24.90 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 25 KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 25 ~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
-+++..++.++. .|+ + +++......+.......||+|+++.-.....+.+.+.+.+-|.-|..+.
T Consensus 15 ~la~km~~~a~~-~gi-~---~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 15 LLANALNKGAKE-RGV-P---LEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHHH-CCC-c---EEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 345666666666 376 4 7777766554322345699999988888888888888888888777664
No 348
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=59.00 E-value=15 Score=30.29 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=47.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCC--CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHA--EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~--~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++..+.|++ +|.+. .+-..+.. +... ..+.+|.++-..+.+.
T Consensus 198 G~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~-----~Ga~~----~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~ 267 (368)
T TIGR02818 198 GLSVIQGARMAKA-SRIIAIDINPAKFELAKK-----LGATD----CVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVN 267 (368)
T ss_pred HHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-----hCCCe----EEcccccchhHHHHHHHHhCCCCCEEEECCCCHH
Confidence 33443 4555552 379999999998888753 24322 11111100 0000 0125899887766555
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
.....++.|++| |+++..-
T Consensus 268 ~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 268 VMRAALECCHKGWGESIIIG 287 (368)
T ss_pred HHHHHHHHhhcCCCeEEEEe
Confidence 555667889886 9988754
No 349
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=58.55 E-value=36 Score=30.62 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=50.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCCCCCCcCEEEEccC-CCchH-HHHHhhCCCCcEEE
Q psy14971 17 VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHAEEGPYDIIHLGAA-CIEVP-KEILAQLKPGGRLV 90 (156)
Q Consensus 17 V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~~~~~fD~I~i~~~-~~~i~-~~l~~~L~pGGrLv 90 (156)
++-.|-+.+....++.|+++.+..-. +.+-..|.. +..+...+|+.|++... ...+. +.+.+..+.||+++
T Consensus 57 ~~l~d~~~~~s~~~~~n~~kil~~~K---~~~~~id~~~~~~~~~p~l~~Y~~vII~~~~l~~l~~~~i~~yV~~GG~vi 133 (585)
T PF09960_consen 57 LILYDSNGELSMDIKENFKKILEYMK---IPYDTIDIAEFIKSSIPSLSDYRGVIILTTDLDPLGNEAIMNYVENGGTVI 133 (585)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhc---cccEeeeccccccccCCcccceeEEEEEeccccccChHHHHHHHHcCCeEE
Confidence 35999999999999999987522222 444444433 22344457886666443 33333 57788889999999
Q ss_pred EEeccC
Q psy14971 91 FHKGLH 96 (156)
Q Consensus 91 ~~~~~~ 96 (156)
+.....
T Consensus 134 f~~~~~ 139 (585)
T PF09960_consen 134 FATTPE 139 (585)
T ss_pred EEeccc
Confidence 987643
No 350
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=58.52 E-value=28 Score=27.83 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc---CCCCCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD---GSKGHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD---~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..|. .+|++++.+++..+.+++ ++.+. ++..+ ..........+|.++-..+....-...++.|
T Consensus 184 lak~~G~-~~v~~~~~s~~~~~~~~~-----~g~~~-----vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L 252 (339)
T cd08232 184 AARRAGA-AEIVATDLADAPLAVARA-----MGADE-----TVNLARDPLAAYAADKGDFDVVFEASGAPAALASALRVV 252 (339)
T ss_pred HHHHcCC-cEEEEECCCHHHHHHHHH-----cCCCE-----EEcCCchhhhhhhccCCCccEEEECCCCHHHHHHHHHHH
Confidence 3444442 278888888887765543 23211 11111 0111112235999988665434445678999
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
+++|+++..-
T Consensus 253 ~~~G~~v~~g 262 (339)
T cd08232 253 RPGGTVVQVG 262 (339)
T ss_pred hcCCEEEEEe
Confidence 9999998753
No 351
>KOG2539|consensus
Probab=58.27 E-value=47 Score=29.10 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEE---EccCCCCCCCCCCcCEEEEccCCCch---------HH-HH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVS---VKDGSKGHAEEGPYDIIHLGAACIEV---------PK-EI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~---~gD~~~~~~~~~~fD~I~i~~~~~~i---------~~-~l 79 (156)
.-.++.||.+..|...+..+++.. -.+ . +.+. .-+..-.......||++++...+.++ ++ .|
T Consensus 226 ~~~~~~Vdrs~~~~~~~e~~lr~~--~~~g~--~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~ 301 (491)
T KOG2539|consen 226 KREYSLVDRSRAMLKQSEKNLRDG--SHIGE--PIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLW 301 (491)
T ss_pred cceeEeeccchHHHHHHHHhhcCh--hhcCc--hhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHH
Confidence 357899999999999999998761 111 0 1111 11222222333459999998876543 22 46
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
..-.++|+++|+...
T Consensus 302 r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 302 RKTDRSGYFLVIIEK 316 (491)
T ss_pred HhccCCCceEEEEec
Confidence 778899999999864
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=57.56 E-value=20 Score=28.71 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC---C---CCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS---K---GHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~---~---~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|...|. ..|++++.+++..+.+++. |.+. ++..+-. + .......+|.++-..+........+
T Consensus 186 lak~~g~-~~v~~~~~~~~~~~~~~~~-----g~~~-----vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~ 254 (347)
T cd05278 186 GARLLGA-ARIIAVDSNPERLDLAKEA-----GATD-----IINPKNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAV 254 (347)
T ss_pred HHHHcCC-CEEEEEeCCHHHHHHHHHh-----CCcE-----EEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHH
Confidence 3455442 4788888888777665532 3211 1111100 0 0112246998886554434555668
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.|+++|+++..
T Consensus 255 ~~l~~~G~~v~~ 266 (347)
T cd05278 255 KVVRPGGTIANV 266 (347)
T ss_pred HHhhcCCEEEEE
Confidence 899999998865
No 353
>PRK13699 putative methylase; Provisional
Probab=56.72 E-value=25 Score=27.35 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=26.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL 36 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~ 36 (156)
|..++.|..++ .+.+++|++++..+.|.++++.
T Consensus 175 gtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 175 GSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHH
Confidence 33344555554 6899999999999999999987
No 354
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=55.31 E-value=22 Score=28.50 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|+++..+++..+.+++ + +.+.- +.....+..+ .......+|.++-...........++.|
T Consensus 178 lA~~~g--~~v~~~~~s~~~~~~~~~-~----g~~~v--~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l 248 (337)
T cd08261 178 VAKARG--ARVIVVDIDDERLEFARE-L----GADDT--INVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELV 248 (337)
T ss_pred HHHHcC--CeEEEECCCHHHHHHHHH-h----CCCEE--ecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHH
Confidence 455554 678888888887776643 1 32110 1111111000 0112245899998765445556678899
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
+++|+++..
T Consensus 249 ~~~G~~i~~ 257 (337)
T cd08261 249 AHGGRVVLV 257 (337)
T ss_pred hcCCEEEEE
Confidence 999998864
No 355
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=54.83 E-value=1.1e+02 Score=24.46 Aligned_cols=78 Identities=8% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..|. .+|++++.+++..+.+++ +|.+.- +.....+... .+....++|.++-..+....-+.+.+.|
T Consensus 185 ~a~~~G~-~~v~~~~~~~~~~~~~~~-----~g~~~~--v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l 256 (345)
T cd08286 185 TAQLYSP-SKIIMVDLDDNRLEVAKK-----LGATHT--VNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELV 256 (345)
T ss_pred HHHHcCC-CeEEEEcCCHHHHHHHHH-----hCCCce--eccccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc
Confidence 3455542 478888888877665552 243220 1111111100 0112346998886554434445667899
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
+++|+++..
T Consensus 257 ~~~g~~v~~ 265 (345)
T cd08286 257 APGGHIANV 265 (345)
T ss_pred cCCcEEEEe
Confidence 999999864
No 356
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=54.20 E-value=11 Score=28.44 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.1
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+...||+||+|++.++
T Consensus 96 ~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 96 KIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HHHHhhccCCeEEEEee
Confidence 46789999999998765
No 357
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.61 E-value=55 Score=26.72 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=44.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-c-CCC---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-D-GSK---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D-~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..|. .+|++++.+++..+.+++ +|.+.. +..... + ..+ ... .+.+|.++-..+........++
T Consensus 206 ~ak~~G~-~~vi~~~~~~~~~~~~~~-----~Ga~~~--i~~~~~~~~~~~~v~~~~-~~~~d~vid~~G~~~~~~~~~~ 276 (369)
T cd08301 206 GARIRGA-SRIIGVDLNPSKFEQAKK-----FGVTEF--VNPKDHDKPVQEVIAEMT-GGGVDYSFECTGNIDAMISAFE 276 (369)
T ss_pred HHHHcCC-CeEEEEcCCHHHHHHHHH-----cCCceE--EcccccchhHHHHHHHHh-CCCCCEEEECCCChHHHHHHHH
Confidence 4555552 389999999998887743 353220 111100 0 000 011 1258988876555544555678
Q ss_pred hCCCC-cEEEEEe
Q psy14971 82 QLKPG-GRLVFHK 93 (156)
Q Consensus 82 ~L~pG-GrLv~~~ 93 (156)
.+++| |+++..-
T Consensus 277 ~~~~~~g~~v~~g 289 (369)
T cd08301 277 CVHDGWGVTVLLG 289 (369)
T ss_pred HhhcCCCEEEEEC
Confidence 88996 9988754
No 358
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=52.30 E-value=1.2e+02 Score=24.26 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
.+|+.+...+.|+-+|++|.+.+... ++ |.|...- .+. ...+|.|+=.-+...+.+..++.+.|
T Consensus 56 ~iA~~L~~~~eV~lvDI~p~lk~ll~---------~~---i~F~~~~--~~~--~~~~DlIID~TGlGGv~~~~Ls~~~p 119 (252)
T PF06690_consen 56 FIASALSKKCEVTLVDIHPHLKELLN---------EN---IKFMEFR--NGL--EGNPDLIIDTTGLGGVDPDFLSKFNP 119 (252)
T ss_pred HHHHHhccCceEEEEeCcHHHHHHhc---------CC---Cceeecc--CCC--CCCCCEEEECCCCCCCCHHHHhccCC
Confidence 67888776679999999999875541 23 5565321 111 24689988877777776667777775
Q ss_pred CcE
Q psy14971 86 GGR 88 (156)
Q Consensus 86 GGr 88 (156)
.-.
T Consensus 120 ~v~ 122 (252)
T PF06690_consen 120 KVF 122 (252)
T ss_pred CEE
Confidence 433
No 359
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.34 E-value=1e+02 Score=23.17 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=46.3
Q ss_pred HhcCCCCEEEEEeCCH-HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCCCc---
Q psy14971 9 GIKGERALVLILNHYM-KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAACIE--- 74 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~-~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~~~--- 74 (156)
.++..+.+|+.+.++. +..+.....++. .+ .+ +.++.+|..+... ..+..|.++.+++...
T Consensus 25 ~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 99 (248)
T PRK07806 25 ILAGAGAHVVVNYRQKAPRANKVVAEIEA-AG-GR---ASAVGADLTDEESVAALMDTAREEFGGLDALVLNASGGMESG 99 (248)
T ss_pred HHHHCCCEEEEEeCCchHhHHHHHHHHHh-cC-Cc---eEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCCCC
Confidence 3444556899888764 344444444544 23 34 7888889765211 0146899888775321
Q ss_pred ----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+-+.+.+.++.+|++|+...
T Consensus 100 ~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 100 MDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 11234455566788887643
No 360
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=51.24 E-value=24 Score=29.73 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=48.2
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCCCC--CCCcCEEEEccCCCchHHHHHhhCC
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGHAE--EGPYDIIHLGAACIEVPKEILAQLK 84 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~~~--~~~fD~I~i~~~~~~i~~~l~~~L~ 84 (156)
|.+.| .++++++|++++.++.|++- |.... +.-... |..+...+ .+--|..|-..+..+..+..++.+.
T Consensus 205 A~~ag-A~~IiAvD~~~~Kl~~A~~f-----GAT~~--vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~ 276 (366)
T COG1062 205 AKAAG-AGRIIAVDINPEKLELAKKF-----GATHF--VNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATH 276 (366)
T ss_pred HHHcC-CceEEEEeCCHHHHHHHHhc-----CCcee--ecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHh
Confidence 34455 48999999999999999853 43210 111111 22111111 2356777776666666777777888
Q ss_pred CCcEEEEEec
Q psy14971 85 PGGRLVFHKG 94 (156)
Q Consensus 85 pGGrLv~~~~ 94 (156)
.+|..++.-.
T Consensus 277 ~~G~~v~iGv 286 (366)
T COG1062 277 RGGTSVIIGV 286 (366)
T ss_pred cCCeEEEEec
Confidence 8999988643
No 361
>KOG0822|consensus
Probab=50.85 E-value=29 Score=31.03 Aligned_cols=75 Identities=19% Similarity=0.106 Sum_probs=48.8
Q ss_pred cCCCCEEEEEeCCHHHHHHHHH-HHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEc----cCCCchHH----HHHh
Q psy14971 11 KGERALVLILNHYMKVKSKNQN-NKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLG----AACIEVPK----EILA 81 (156)
Q Consensus 11 ~g~~g~V~avD~~~~~~~~A~~-~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~----~~~~~i~~----~l~~ 81 (156)
....-++++||.+|..+-.-+. |++ +.+++ |+++.+|...--+.....|.+++. .+..++.+ ....
T Consensus 392 ~~RkVklyavEKNPNAivtL~~~n~~---~W~~~--Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~ 466 (649)
T KOG0822|consen 392 TDRKVKLYAVEKNPNAIVTLQNRNFE---CWDNR--VTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQK 466 (649)
T ss_pred hcCceEEEEEecCcchhhhhhhhchh---hhcCe--eEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHh
Confidence 3345689999999998766554 333 33454 999999988633223567888763 23334433 4467
Q ss_pred hCCCCcEEE
Q psy14971 82 QLKPGGRLV 90 (156)
Q Consensus 82 ~L~pGGrLv 90 (156)
.|||.|+-+
T Consensus 467 fLkpdgIsI 475 (649)
T KOG0822|consen 467 FLKPDGISI 475 (649)
T ss_pred hcCCCceEc
Confidence 899997643
No 362
>PRK06940 short chain dehydrogenase; Provisional
Probab=50.05 E-value=1.1e+02 Score=23.98 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=41.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---------CCCCCcCEEEEccCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---------AEEGPYDIIHLGAACI 73 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---------~~~~~fD~I~i~~~~~ 73 (156)
+++.+..+.+|+.++++++-++...+.++. .+. + +.++..|..+.- ...++.|.++.+++..
T Consensus 17 la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~-~~~-~---~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 17 IARRVGAGKKVLLADYNEENLEAAAKTLRE-AGF-D---VSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCC-e---EEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 444444568999999998877666666654 242 4 778888876421 1125789999998764
No 363
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=49.99 E-value=3.1 Score=28.46 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCCcCEEEEccC--CCchHHHHHhhCCCCcEEEEEe
Q psy14971 60 EGPYDIIHLGAA--CIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 60 ~~~fD~I~i~~~--~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
.++||+|+=..+ ...+.+.+.+.| |||++|...
T Consensus 17 ~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 17 PGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIG 51 (127)
T ss_dssp TS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-
T ss_pred CCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEEC
Confidence 468999998888 222223445666 999986654
No 364
>KOG2798|consensus
Probab=49.45 E-value=20 Score=30.01 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=30.8
Q ss_pred eEEEEccCCCCCCC---CCCcCEEEEccCC---Cch---HHHHHhhCCCCcEEEE
Q psy14971 46 KNVSVKDGSKGHAE---EGPYDIIHLGAAC---IEV---PKEILAQLKPGGRLVF 91 (156)
Q Consensus 46 v~~~~gD~~~~~~~---~~~fD~I~i~~~~---~~i---~~~l~~~L~pGGrLv~ 91 (156)
.++-.||..+.... .+.||+|+.+.=. +++ -+.+...|||||..+=
T Consensus 240 fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 44455777665443 3479999887522 233 3577899999998875
No 365
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=49.40 E-value=27 Score=27.83 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=41.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CC-CCCCCcCEEEEccCCCchHHHHHhhCCCCcEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GH-AEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~-~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv 90 (156)
.+|++++.+++..+.++ . +|.+. + +-..+... .. ...+.+|.++++..-....+..++.|+++|+++
T Consensus 188 ~~v~~~~~~~~~~~~~~----~-~g~~~---v-~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v 258 (338)
T PRK09422 188 AKVIAVDINDDKLALAK----E-VGADL---T-INSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVV 258 (338)
T ss_pred CeEEEEeCChHHHHHHH----H-cCCcE---E-ecccccccHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEE
Confidence 68999999998877774 2 34422 2 11111000 00 011247866666554555567788999999998
Q ss_pred EEe
Q psy14971 91 FHK 93 (156)
Q Consensus 91 ~~~ 93 (156)
..-
T Consensus 259 ~~g 261 (338)
T PRK09422 259 AVG 261 (338)
T ss_pred EEe
Confidence 753
No 366
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=48.67 E-value=88 Score=23.52 Aligned_cols=59 Identities=19% Similarity=0.036 Sum_probs=40.4
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
.++..+.+|+.++++++..+...+.+.. .+ .+ +.++.+|..+.. ....+.|.|+.+++.
T Consensus 20 ~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 20 ALAAAGANVVVNDLGEAGAEAAAKVATD-AG-GS---VIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---eEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3444557899999998877777666654 23 35 888899986521 012468999988865
No 367
>PRK07831 short chain dehydrogenase; Provisional
Probab=48.17 E-value=79 Score=24.21 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=40.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++.++.+.+.++..++..+ +.++.+|..+.. ...++.|.++.+++.
T Consensus 38 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 38 ALEEGARVVISDIHERRLGETADELAAELGLGR---VEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCce---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334456899999998888777776654223335 888889976421 112578999998875
No 368
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.87 E-value=30 Score=22.41 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=46.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCchH-----HHHHhhCCCCcEE
Q psy14971 17 VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEVP-----KEILAQLKPGGRL 89 (156)
Q Consensus 17 V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i~-----~~l~~~L~pGGrL 89 (156)
|.-+|-++...+..++.++. .|+.. +. ...+..+.+ ....+||.|+++...+... +.+ +...+...+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~-~~~~~---v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i-~~~~~~~~i 74 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLER-AGYEE---VT-TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQI-RQINPSIPI 74 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTEEE---EE-EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHH-HHHTTTSEE
T ss_pred cEEEECCHHHHHHHHHHHHh-CCCCE---EE-EECCHHHHHHHhcccCceEEEEEeeecccccccccccc-ccccccccE
Confidence 46689999999999999987 35422 22 223332211 1235699999998776533 223 334478888
Q ss_pred EEEecc
Q psy14971 90 VFHKGL 95 (156)
Q Consensus 90 v~~~~~ 95 (156)
++....
T Consensus 75 i~~t~~ 80 (112)
T PF00072_consen 75 IVVTDE 80 (112)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 887754
No 369
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=47.67 E-value=1.5e+02 Score=24.11 Aligned_cols=87 Identities=10% Similarity=-0.024 Sum_probs=54.2
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHH-----------HhhhcCCCCccceEEEE---ccCCCC----CCCCCCcCEEEEc
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNN-----------KKLNIKQNRKSFKNVSV---KDGSKG----HAEEGPYDIIHLG 69 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~-----------l~~~~g~~n~~~v~~~~---gD~~~~----~~~~~~fD~I~i~ 69 (156)
-+++..+-.|+++|++++.++.+... +.+ ++.++ +.++- ||..+. +.+.-.-+=|+++
T Consensus 17 ~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~-L~~pr---~vWlMvPag~it~~vi~~la~~L~~GDivID 92 (300)
T COG1023 17 RRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAK-LSAPR---IVWLMVPAGDITDAVIDDLAPLLSAGDIVID 92 (300)
T ss_pred HHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHh-cCCCc---EEEEEccCCCchHHHHHHHHhhcCCCCEEEE
Confidence 34555667899999999999887643 233 34343 44443 332211 1111122445667
Q ss_pred cCCCchHHHHH--hhCCCCcEEEEEeccCCC
Q psy14971 70 AACIEVPKEIL--AQLKPGGRLVFHKGLHNG 98 (156)
Q Consensus 70 ~~~~~i~~~l~--~~L~pGGrLv~~~~~~~~ 98 (156)
++-+++.+.+. ++|++-|+=++.++++++
T Consensus 93 GGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG 123 (300)
T COG1023 93 GGNSNYKDSLRRAKLLAEKGIHFLDVGTSGG 123 (300)
T ss_pred CCccchHHHHHHHHHHHhcCCeEEeccCCCC
Confidence 77778877654 579999999999998765
No 370
>PRK12939 short chain dehydrogenase; Provisional
Probab=47.44 E-value=1.2e+02 Score=22.73 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=39.6
Q ss_pred cCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 11 KGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 11 ~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+..+.+|+.++.+++-++...+.++. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 28 ~~~G~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 28 AEAGATVAFNDGLAAEARELAAALEA-AG-GR---AHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33457899999998877777666655 24 35 8899999865211 01578999998865
No 371
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.73 E-value=36 Score=22.70 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 25 KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 25 ~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
-+++..++.++. .|+ + +++...+..+.......||.|++..-.....+.+.+...+.+.-|..+.
T Consensus 14 ~~~~ki~~~~~~-~~~-~---~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 14 ILVKKMKKAAEK-RGI-D---AEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHHHHH-CCC-c---eEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcC
Confidence 456666667776 365 3 7777777654322235699999987777666777766666666555554
No 372
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=46.68 E-value=34 Score=27.97 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC---CC---CCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS---KG---HAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~---~~---~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. ..|++++.+++..+.+++ +|.+. ++..+-. +. .. ...+|.|+-..+.........
T Consensus 205 la~~~G~-~~v~~~~~~~~k~~~~~~-----~g~~~-----~i~~~~~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~ 272 (365)
T cd08278 205 AAKIAGC-TTIIAVDIVDSRLELAKE-----LGATH-----VINPKEEDLVAAIREIT-GGGVDYALDTTGVPAVIEQAV 272 (365)
T ss_pred HHHHcCC-CeEEEEeCCHHHHHHHHH-----cCCcE-----EecCCCcCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHH
Confidence 4556653 369999999887776653 23321 1111110 00 11 245899987665555556778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 273 ~~l~~~G~~v~~g 285 (365)
T cd08278 273 DALAPRGTLALVG 285 (365)
T ss_pred HHhccCCEEEEeC
Confidence 8999999998753
No 373
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=46.33 E-value=1.3e+02 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
..+|.++-..+........++.|+++|+++..
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46899998665444555678899999999864
No 374
>PRK05599 hypothetical protein; Provisional
Probab=46.11 E-value=1.3e+02 Score=23.00 Aligned_cols=56 Identities=7% Similarity=-0.029 Sum_probs=40.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
.+.+|+.+.++++-++...+.++. .+.+. +.++..|..+.. ...++.|.++.+++.
T Consensus 22 ~g~~Vil~~r~~~~~~~~~~~l~~-~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 22 HGEDVVLAARRPEAAQGLASDLRQ-RGATS---VHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-ccCCc---eEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence 468999999999888877777766 35334 778888876521 112578999988865
No 375
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=45.96 E-value=1.5e+02 Score=23.42 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
|+..| .+|+.++.+++..+.+++ +|.+. + +..+..... .....+|.++-...........++.|+++
T Consensus 182 a~~~G--~~v~~~~~~~~~~~~~~~-----~g~~~---~--~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~ 249 (330)
T cd08245 182 ARAMG--FETVAITRSPDKRELARK-----LGADE---V--VDSGAELDEQAAAGGADVILVTVVSGAAAEAALGGLRRG 249 (330)
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHH-----hCCcE---E--eccCCcchHHhccCCCCEEEECCCcHHHHHHHHHhcccC
Confidence 44444 578888888887766632 23221 1 111100000 01245898886544344556678899999
Q ss_pred cEEEEEe
Q psy14971 87 GRLVFHK 93 (156)
Q Consensus 87 GrLv~~~ 93 (156)
|+++...
T Consensus 250 G~~i~~~ 256 (330)
T cd08245 250 GRIVLVG 256 (330)
T ss_pred CEEEEEC
Confidence 9998764
No 376
>PRK06914 short chain dehydrogenase; Provisional
Probab=45.95 E-value=1.1e+02 Score=23.72 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=40.2
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---------~~~~fD~I~i~~~~ 72 (156)
.+...+..|++++++++-.+...+.+.. .+.+.. +.++.+|..+.-. ..++.|.|+.+++.
T Consensus 22 ~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~--~~~~~~D~~d~~~~~~~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 22 ELAKKGYLVIATMRNPEKQENLLSQATQ-LNLQQN--IKVQQLDVTDQNSIHNFQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCc--eeEEecCCCCHHHHHHHHHHHHhcCCeeEEEECCcc
Confidence 3455567999999998877666655554 243222 8889999865211 12467999988764
No 377
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=45.38 E-value=30 Score=27.62 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHhcCCCCE-EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCchHHHH
Q psy14971 7 IVGIKGERAL-VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~-V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+|...| .+ |+++..+++..+.++ . +|.+. ++..+-.. .......+|.|+-..+........
T Consensus 184 la~~~g--~~~v~~~~~s~~~~~~~~----~-~g~~~-----~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~ 251 (343)
T cd08235 184 LAKASG--ARKVIVSDLNEFRLEFAK----K-LGADY-----TIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQA 251 (343)
T ss_pred HHHHcC--CcEEEEECCCHHHHHHHH----H-hCCcE-----EecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHH
Confidence 344444 45 888888888776653 2 23311 11111100 011223589998766644455566
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
++.|+++|+++....
T Consensus 252 ~~~l~~~g~~v~~~~ 266 (343)
T cd08235 252 LELVRKGGRILFFGG 266 (343)
T ss_pred HHHhhcCCEEEEEec
Confidence 889999999987543
No 378
>PRK06125 short chain dehydrogenase; Provisional
Probab=45.14 E-value=1.3e+02 Score=23.00 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=40.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++.+.+.++.. .-.+ +.++..|..+.. ...++.|.++.+++.
T Consensus 27 l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~---~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 27 FAAEGCHLHLVARDADALEALAADLRAA-HGVD---VAVHALDLSSPEAREQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhh-cCCc---eEEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 3344579999999998887777776652 2234 778888875421 113578999998764
No 379
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=45.06 E-value=24 Score=26.57 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=19.1
Q ss_pred CchHHH-HHH-hcCCCCEEEEEeCCHHHHHHHH
Q psy14971 1 MGDLNV-IVG-IKGERALVLILNHYMKVKSKNQ 31 (156)
Q Consensus 1 ~G~la~-la~-l~g~~g~V~avD~~~~~~~~A~ 31 (156)
+||+.+ +|. +...+-.|+++|++++.++..+
T Consensus 8 lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 8 LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp -STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 467764 333 3333469999999999888765
No 380
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=44.94 E-value=47 Score=23.27 Aligned_cols=25 Identities=16% Similarity=-0.041 Sum_probs=17.9
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHH
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNN 33 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~ 33 (156)
+..++.++|+++|-+|...+..++|
T Consensus 18 ~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 18 KKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp HHTS--SEEEEE---HHHHHHHHHH
T ss_pred HHcCCCCEEEEEECCHHHHHHHhHH
Confidence 3567889999999999999999999
No 381
>KOG0022|consensus
Probab=44.80 E-value=34 Score=28.71 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCchHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
|++.|. +++++||++++-.+.|++ +|.... |... |...... .++.+|.-|=..+..+.....+.
T Consensus 212 aka~GA-srIIgvDiN~~Kf~~ak~-----fGaTe~--iNp~--d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~ 281 (375)
T KOG0022|consen 212 AKAAGA-SRIIGVDINPDKFEKAKE-----FGATEF--INPK--DLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALE 281 (375)
T ss_pred HHhcCc-ccEEEEecCHHHHHHHHh-----cCccee--cChh--hccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHH
Confidence 555564 899999999999988874 354220 2222 3222111 13668888866555555555566
Q ss_pred hCCCC-cEEEEE
Q psy14971 82 QLKPG-GRLVFH 92 (156)
Q Consensus 82 ~L~pG-GrLv~~ 92 (156)
.-+.| |.-|+.
T Consensus 282 s~h~GwG~sv~i 293 (375)
T KOG0022|consen 282 SCHKGWGKSVVI 293 (375)
T ss_pred HhhcCCCeEEEE
Confidence 66777 877774
No 382
>PLN02702 L-idonate 5-dehydrogenase
Probab=44.43 E-value=1.2e+02 Score=24.51 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=43.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE---ccCCCC---C--CCCCCcCEEEEccCCCchHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV---KDGSKG---H--AEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~---gD~~~~---~--~~~~~fD~I~i~~~~~~i~~~ 78 (156)
+|+..|. ..|++++.+++..+.+++ +|.+. +.... .+..+. . ...+.+|.++-..+.......
T Consensus 200 ~a~~~G~-~~v~~~~~~~~~~~~~~~-----~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 270 (364)
T PLN02702 200 AARAFGA-PRIVIVDVDDERLSVAKQ-----LGADE---IVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMST 270 (364)
T ss_pred HHHHcCC-CEEEEECCCHHHHHHHHH-----hCCCE---EEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHH
Confidence 3455543 358889988877765553 24322 21111 111000 0 112468999876554444566
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
.++.|+++|+++..
T Consensus 271 ~~~~l~~~G~~v~~ 284 (364)
T PLN02702 271 ALEATRAGGKVCLV 284 (364)
T ss_pred HHHHHhcCCEEEEE
Confidence 78899999998764
No 383
>PRK07024 short chain dehydrogenase; Provisional
Probab=44.26 E-value=1e+02 Score=23.56 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=38.2
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.+.. .+ + +.++.+|..+.. ...++.|.++.+++.
T Consensus 22 l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~--~---~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 22 YARQGATLGLVARRTDALQAFAARLPK-AA--R---VSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHhccc-CC--e---eEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 444457999999998877665555443 12 5 888999986521 112468999998764
No 384
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=43.64 E-value=24 Score=27.47 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCchHH-HHHhhCC
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEVPK-EILAQLK 84 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i~~-~l~~~L~ 84 (156)
+|.-+|-++++.+.-...++.. |+. + ....|+.+.. .... ||.|+++.+.+.+.- .+++.|+
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~-g~~----v-~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR 66 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEE-GYE----V-DVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLR 66 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHC-CCE----E-EEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHH
Confidence 6788999999999999999984 753 2 3333443322 2234 999999999987652 4444554
No 385
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=43.04 E-value=1.7e+02 Score=23.33 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=41.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+|+.++.+++..+.+++ +|.+. +-.... +... .....+|.++-..+.........+.|+++|+++..-
T Consensus 194 ~~v~~~~~~~~~~~~~~~-----~g~~~---vi~~~~~~~~~--~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 194 AEVTAFSRSPSKKEDALK-----LGADE---FIATKDPEAMK--KAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CeEEEEcCCHHHHHHHHH-----cCCcE---EecCcchhhhh--hccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 589999988887776642 24322 110011 1001 113568999976655433456688999999998753
No 386
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.44 E-value=84 Score=24.37 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
+|+..| .+|+++..+++..+.++ . +|.+. +-....+..+... ....+|.++-..+. ......++.|++
T Consensus 162 ~a~~~g--~~v~~~~~~~~~~~~~~----~-~g~~~---~~~~~~~~~~~i~~~~~~~d~vl~~~~~-~~~~~~~~~l~~ 230 (320)
T cd08243 162 LAKALG--ATVTATTRSPERAALLK----E-LGADE---VVIDDGAIAEQLRAAPGGFDKVLELVGT-ATLKDSLRHLRP 230 (320)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHH----h-cCCcE---EEecCccHHHHHHHhCCCceEEEECCCh-HHHHHHHHHhcc
Confidence 345554 57888888887655553 2 35422 2111111000000 02469999865553 444566799999
Q ss_pred CcEEEEE
Q psy14971 86 GGRLVFH 92 (156)
Q Consensus 86 GGrLv~~ 92 (156)
+|+++..
T Consensus 231 ~g~~v~~ 237 (320)
T cd08243 231 GGIVCMT 237 (320)
T ss_pred CCEEEEE
Confidence 9998764
No 387
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=42.01 E-value=1.5e+02 Score=22.30 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=40.2
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+++..+.+|+.++++++-.+.....++. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 23 ~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 23 ALAKEGAKVVIADLNDEAAAAAAEALQK-AG-GK---AIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHCCCeEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3444567999999999887777666655 23 35 8888889764211 12468999988764
No 388
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.92 E-value=46 Score=26.34 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=41.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh------cCC-C---------CccceEEEEccCCCCCCCCCCcCEEEEccCCC----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN------IKQ-N---------RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---- 73 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~------~g~-~---------n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---- 73 (156)
+-.|+.+|++++.++.++++++.. .|. + + +++ ..|. ......|.|+......
T Consensus 26 g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~---l~~-~~~~----~~~~~aDlVi~av~e~~~~k 97 (282)
T PRK05808 26 GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALAR---ITG-TTDL----DDLKDADLVIEAATENMDLK 97 (282)
T ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC---eEE-eCCH----HHhccCCeeeecccccHHHH
Confidence 458999999999998776543221 121 1 2 332 2221 1224579999976542
Q ss_pred -chHHHHHhhCCCCcEEEEEec
Q psy14971 74 -EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.++++..++....
T Consensus 98 ~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 98 KKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred HHHHHHHHhhCCCCcEEEECCC
Confidence 223345566777776644433
No 389
>PRK05854 short chain dehydrogenase; Provisional
Probab=41.48 E-value=1.7e+02 Score=23.45 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=40.7
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.+.++++..+.+.+.+....+-.+ +.++..|..+.. ...++.|.++.+++.
T Consensus 34 La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~---v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 34 LAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAK---LSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc---eEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 444567999999999888777777654211124 888888976521 113568999998864
No 390
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=41.22 E-value=33 Score=26.89 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCCcCEEEEccCCCchHH---------HHHhhCCCCcE-----EEEEec
Q psy14971 60 EGPYDIIHLGAACIEVPK---------EILAQLKPGGR-----LVFHKG 94 (156)
Q Consensus 60 ~~~fD~I~i~~~~~~i~~---------~l~~~L~pGGr-----Lv~~~~ 94 (156)
...||+|.++-.+.-+|+ ...+.|+|+|. |+++.+
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 568999999888777763 45789999999 777654
No 391
>PRK06194 hypothetical protein; Provisional
Probab=41.19 E-value=1.4e+02 Score=23.10 Aligned_cols=59 Identities=7% Similarity=-0.079 Sum_probs=39.9
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C--------CCCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A--------EEGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~--------~~~~fD~I~i~~~~~ 73 (156)
++..+.+|+.++++++.++...+.+.. .+ .+ +.++.+|..+.- . ..++.|.++.+++..
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 26 GAALGMKLVLADVQQDALDRAVAELRA-QG-AE---VLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHCCCEEEEEeCChHHHHHHHHHHHh-cC-Ce---EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 444567899999998877766666654 23 24 788899986421 0 124689999998763
No 392
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=41.05 E-value=1.5e+02 Score=23.07 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCcCEEEEccCCCchHH---HHHhhCCCCcEEEEE
Q psy14971 60 EGPYDIIHLGAACIEVPK---EILAQLKPGGRLVFH 92 (156)
Q Consensus 60 ~~~fD~I~i~~~~~~i~~---~l~~~L~pGGrLv~~ 92 (156)
..+||.||+......+.+ .+...|.++..++..
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~ 92 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFL 92 (293)
T ss_pred cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEc
Confidence 457999999877665543 455677777766654
No 393
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.95 E-value=1.5e+02 Score=22.17 Aligned_cols=58 Identities=5% Similarity=-0.012 Sum_probs=38.8
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++.+.+.++. .+ .+ +.++..|..+.. ...+++|.||.+++.
T Consensus 25 l~~~G~~vi~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 25 LAQKGAKLALIDLNQEKLEEAVAECGA-LG-TE---VRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---eEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334457899999998877777666655 24 24 778888875421 011468999988763
No 394
>PTZ00357 methyltransferase; Provisional
Probab=40.90 E-value=1.2e+02 Score=28.50 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=45.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhh--cCC-----CCccceEEEEccCCCCCCC-----------CCCcCEEEEc--
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLN--IKQ-----NRKSFKNVSVKDGSKGHAE-----------EGPYDIIHLG-- 69 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~--~g~-----~n~~~v~~~~gD~~~~~~~-----------~~~fD~I~i~-- 69 (156)
..+-.-+|++||.++..+...+.+.... ... .++ |+++..|..+.... .+..|+|++.
T Consensus 724 ~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~--VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 724 ALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHT--LEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELL 801 (1072)
T ss_pred HcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCe--EEEEeCcccccccccccccccccccccccceehHhhh
Confidence 3444568999999977554544443210 110 223 89999998763221 1368999882
Q ss_pred --cCCCchH----HHHHhhCCC----CcE
Q psy14971 70 --AACIEVP----KEILAQLKP----GGR 88 (156)
Q Consensus 70 --~~~~~i~----~~l~~~L~p----GGr 88 (156)
.+..++. +.+.+.||+ +|+
T Consensus 802 GSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 802 GSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccCCHHHHHHHHHhhhhhcccccc
Confidence 2333443 345567876 787
No 395
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=40.54 E-value=1e+02 Score=27.68 Aligned_cols=68 Identities=9% Similarity=-0.083 Sum_probs=42.2
Q ss_pred chHHH-H-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhh----cCC---CCccceEEEEccCCCCCC---CCCCcCEEEEc
Q psy14971 2 GDLNV-I-VGIKGERALVLILNHYMKVKSKNQNNKKLN----IKQ---NRKSFKNVSVKDGSKGHA---EEGPYDIIHLG 69 (156)
Q Consensus 2 G~la~-l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~----~g~---~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~ 69 (156)
|+++. + .+++..+.+|+++.++++-++...+.+... .|. .+ +.++.+|..+... ..+..|.||.+
T Consensus 90 GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~---v~iV~gDLtD~esI~~aLggiDiVVn~ 166 (576)
T PLN03209 90 GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEK---LEIVECDLEKPDQIGPALGNASVVICC 166 (576)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCc---eEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 45552 2 344555678999999988776655544321 011 24 8899999875211 12568999988
Q ss_pred cCC
Q psy14971 70 AAC 72 (156)
Q Consensus 70 ~~~ 72 (156)
++.
T Consensus 167 AG~ 169 (576)
T PLN03209 167 IGA 169 (576)
T ss_pred ccc
Confidence 764
No 396
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.50 E-value=1.5e+02 Score=22.69 Aligned_cols=57 Identities=18% Similarity=0.018 Sum_probs=40.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++.+.+.++. .+ + +.++..|..+.- ...++.|.++.+++.
T Consensus 20 l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~--~---~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 20 LLKKGARVVISSRNEENLEKALKELKE-YG--E---VYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHh-cC--C---ceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 334467999999999888877777765 23 5 778888875421 112578999988764
No 397
>PRK08703 short chain dehydrogenase; Provisional
Probab=40.49 E-value=1.5e+02 Score=22.25 Aligned_cols=59 Identities=15% Similarity=-0.019 Sum_probs=37.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------------CC-CCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------------EE-GPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------------~~-~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++..+...+.+.. .+... +.++..|..+... .. +..|.|+.+++.
T Consensus 26 l~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~---~~~~~~D~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 26 YAAAGATVILVARHQKKLEKVYDAIVE-AGHPE---PFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHcCCEEEEEeCChHHHHHHHHHHHH-cCCCC---cceEEeeecccchHHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 344467999999999877776666654 23333 5666677543110 01 468999988874
No 398
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=40.39 E-value=45 Score=27.17 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.|+-..+-.......++.|+++|+++...
T Consensus 255 ~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 255 RGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 469999865554324456788999999998764
No 399
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.38 E-value=44 Score=22.33 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 25 KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 25 ~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
-+++..++-++. .|+ + +++...+..+.......||+|+++.-.....+.+.+.+.+-|.=|..+.
T Consensus 18 ~l~~k~~~~~~~-~gi-~---~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 18 LLVNKMNKAAEE-YGV-P---VKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHHHH-CCC-c---EEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 355666666666 365 3 6777766544222234689999988877777777777766665555554
No 400
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=40.15 E-value=56 Score=26.71 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=45.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc--cCCC---CCCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK--DGSK---GHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g--D~~~---~~~~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..|. ..|++++.+++..+.+++ + |.+.. +..... +..+ ... ...+|.++-..+....
T Consensus 196 G~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~----g~~~~--v~~~~~~~~~~~~l~~~~-~~~~d~vid~~g~~~~ 266 (365)
T cd05279 196 GLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-L----GATEC--INPRDQDKPIVEVLTEMT-DGGVDYAFEVIGSADT 266 (365)
T ss_pred HHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h----CCCee--cccccccchHHHHHHHHh-CCCCcEEEECCCCHHH
Confidence 34443 4555552 358889988888777742 2 43210 111111 1000 011 2468999865544344
Q ss_pred HHHHHhhCC-CCcEEEEEe
Q psy14971 76 PKEILAQLK-PGGRLVFHK 93 (156)
Q Consensus 76 ~~~l~~~L~-pGGrLv~~~ 93 (156)
....++.|+ ++|+++..-
T Consensus 267 ~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 267 LKQALDATRLGGGTSVVVG 285 (365)
T ss_pred HHHHHHHhccCCCEEEEEe
Confidence 455678889 999998753
No 401
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=40.11 E-value=25 Score=28.92 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.5
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
...+.|+|||||++..
T Consensus 225 ~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 225 FAPNLLAPGGRLSIIS 240 (305)
T ss_pred HHHHHhcCCCEEEEEe
Confidence 4578999999999975
No 402
>PRK10083 putative oxidoreductase; Provisional
Probab=39.86 E-value=1.2e+02 Score=24.18 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=38.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccce-EEEEccCCCCCCC-CCCcCEEEEccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAE-EGPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v-~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
..|++++.+++..+.+++ +|.+. + .....+..+.... ...+|.++-..+........++.|+++|+++..
T Consensus 187 ~~v~~~~~~~~~~~~~~~-----~Ga~~---~i~~~~~~~~~~~~~~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 187 KAVIVADRIDERLALAKE-----SGADW---VINNAQEPLGEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CEEEEEcCCHHHHHHHHH-----hCCcE---EecCccccHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 468889998888777663 24321 1 1111111111111 122567766554444445667899999999885
No 403
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=39.58 E-value=39 Score=26.00 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=41.4
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+...| ..|++++.+++..+.+++ +|.+. ++..+-.. .+.....+|.++-..+. ......++
T Consensus 157 a~~~g--~~v~~~~~~~~~~~~~~~-----~g~~~-----~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~ 223 (320)
T cd05286 157 AKALG--ATVIGTVSSEEKAELARA-----AGADH-----VINYRDEDFVERVREITGGRGVDVVYDGVGK-DTFEGSLD 223 (320)
T ss_pred HHHcC--CEEEEEcCCHHHHHHHHH-----CCCCE-----EEeCCchhHHHHHHHHcCCCCeeEEEECCCc-HhHHHHHH
Confidence 44444 578888888776655532 24322 11111100 01122458999875554 34556788
Q ss_pred hCCCCcEEEEEe
Q psy14971 82 QLKPGGRLVFHK 93 (156)
Q Consensus 82 ~L~pGGrLv~~~ 93 (156)
.|+++|+++..-
T Consensus 224 ~l~~~g~~v~~g 235 (320)
T cd05286 224 SLRPRGTLVSFG 235 (320)
T ss_pred hhccCcEEEEEe
Confidence 999999988753
No 404
>PRK06139 short chain dehydrogenase; Provisional
Probab=39.51 E-value=1.1e+02 Score=24.85 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=41.6
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.++. .+. + +.++..|..+... ..++.|.++.+++.
T Consensus 27 la~~G~~Vvl~~R~~~~l~~~~~~~~~-~g~-~---~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 27 FARRGARLVLAARDEEALQAVAEECRA-LGA-E---VLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHh-cCC-c---EEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 344467999999999988888777776 353 4 7778888764210 12678999999874
No 405
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.24 E-value=83 Score=27.38 Aligned_cols=59 Identities=7% Similarity=-0.043 Sum_probs=38.2
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
+...+...+..|+..|.++.....+...+. ..+ +.+..|.-.. .....+|.|+.+.+.+
T Consensus 22 ~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~----~~~---i~~~~g~~~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 22 AARFLLKLGAEVTVSDDRPAPEGLAAQPLL----LEG---IEVELGSHDD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred HHHHHHHCCCeEEEEcCCCCccchhhhhhh----ccC---ceeecCccch--hccccCCEEEECCCCC
Confidence 333344446899999988887333333221 245 8888887554 3346799999998876
No 406
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=38.62 E-value=80 Score=20.98 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=24.1
Q ss_pred hHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEc
Q psy14971 75 VPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~ 109 (156)
.....+..|+.||++...-...+- ...+..+++.
T Consensus 6 ~EQR~LHvLAqGG~I~~~rd~~gr-i~~v~C~TRe 39 (85)
T PF09857_consen 6 QEQRVLHVLAQGGRIRHERDDSGR-ITAVECYTRE 39 (85)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCC-EEEEEEEccC
Confidence 345678899999999997765443 4556677774
No 407
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=38.26 E-value=55 Score=21.86 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCcCEEEEccCCCchHH---HHHhhCCCCcEEEEEecc
Q psy14971 61 GPYDIIHLGAACIEVPK---EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~---~l~~~L~pGGrLv~~~~~ 95 (156)
..||.+++++...--|+ .+..-++-||.|++...+
T Consensus 10 ~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 10 QEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp --BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-
T ss_pred CccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCC
Confidence 46999999986655554 456789999999998764
No 408
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=37.97 E-value=55 Score=25.26 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=33.6
Q ss_pred CchHH--HHHHhcCCCC--EEEEEeCCHH---HHHHHHHHHhhhcC---------CCCccceEEEEccCCCCC---CCC-
Q psy14971 1 MGDLN--VIVGIKGERA--LVLILNHYMK---VKSKNQNNKKLNIK---------QNRKSFKNVSVKDGSKGH---AEE- 60 (156)
Q Consensus 1 ~G~la--~la~l~g~~g--~V~avD~~~~---~~~~A~~~l~~~~g---------~~n~~~v~~~~gD~~~~~---~~~- 60 (156)
.|||. ++.+++.... +|+.+-+... ..++.++.+.. .+ .++ |+++.||..+.. .+.
T Consensus 5 TGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~-~~~~~~~~~~~~~r---i~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 5 TGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKE-YGLWDDLDKEALSR---IEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp TSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-S-S-HHHHH-HHHTTT---EEEEE--TTSGGGG--HHH
T ss_pred CcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhccc-ccchhhhhhhhhcc---EEEEeccccccccCCChHH
Confidence 47887 4556654322 9999988763 33333333332 12 245 999999987632 211
Q ss_pred -----CCcCEEEEccCC
Q psy14971 61 -----GPYDIIHLGAAC 72 (156)
Q Consensus 61 -----~~fD~I~i~~~~ 72 (156)
...|.||-.++.
T Consensus 81 ~~~L~~~v~~IiH~Aa~ 97 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAAS 97 (249)
T ss_dssp HHHHHHH--EEEE--SS
T ss_pred hhccccccceeeecchh
Confidence 245888877664
No 409
>KOG3201|consensus
Probab=37.39 E-value=66 Score=24.52 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhh--cCCCCccceEEEEccCC--CCCCCCCCcCEEEEccCC------CchHHHHHh
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLN--IKQNRKSFKNVSVKDGS--KGHAEEGPYDIIHLGAAC------IEVPKEILA 81 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~--~g~~n~~~v~~~~gD~~--~~~~~~~~fD~I~i~~~~------~~i~~~l~~ 81 (156)
-+...|.-.|-+++.++..++-...+ .+.+. ..+..-+-. ....+...||.|++.-.. ..+.+.+..
T Consensus 52 a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts---c~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~ 128 (201)
T KOG3201|consen 52 APDSSVWLTDGNEESVRNVEKIRNSNMASSLTS---CCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKS 128 (201)
T ss_pred cCCceEEEecCCHHHHHHHHHHHhcccccccce---ehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHH
Confidence 35578999999999888777654432 12222 222221111 111223579998875443 134467789
Q ss_pred hCCCCcEEEEEecc
Q psy14971 82 QLKPGGRLVFHKGL 95 (156)
Q Consensus 82 ~L~pGGrLv~~~~~ 95 (156)
.|+|.|+-++..+.
T Consensus 129 lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 129 LLRPSGRALLFSPR 142 (201)
T ss_pred HhCcccceeEecCc
Confidence 99999996665443
No 410
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=37.32 E-value=1.7e+02 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=38.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-HHHHhhCCCCcEEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP-KEILAQLKPGGRLVFH 92 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~-~~l~~~L~pGGrLv~~ 92 (156)
+.+|+.+|+++.....|. . .|. ++. +..+. ....|+|+...+..++. ...++.+|+|++++..
T Consensus 235 Ga~ViV~d~dp~ra~~A~----~-~G~------~v~--~l~ea---l~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 235 GARVIVTEVDPICALQAA----M-DGF------RVM--TMEEA---AELGDIFVTATGNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CCEEEEEcCCchhhHHHH----h-cCC------Eec--CHHHH---HhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEc
Confidence 468999999987654332 1 232 111 11111 12479998876655544 4678899999988774
No 411
>PRK07109 short chain dehydrogenase; Provisional
Probab=36.89 E-value=1.4e+02 Score=24.25 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=41.4
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.++. .|. + +.++.+|..+... ..++.|.++.+++.
T Consensus 28 la~~G~~Vvl~~R~~~~l~~~~~~l~~-~g~-~---~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 28 FARRGAKVVLLARGEEGLEALAAEIRA-AGG-E---ALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHH-cCC-c---EEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 334457999999999888877777766 353 5 8888899865211 12578999998865
No 412
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=36.85 E-value=2.2e+02 Score=22.87 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCEEEEEeCCHHHHHHHHHH--HhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNN--KKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~--l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~~l~~~L~pGGr 88 (156)
+..|+.+++.++.++.-+++ +.. ..... .....-..... ...++||.|++..-..... +.+...+.++..
T Consensus 25 G~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~---~~~~~~~~~~~-~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~ 99 (305)
T PRK05708 25 GLPVRLILRDRQRLAAYQQAGGLTL-VEQGQ---ASLYAIPAETA-DAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAE 99 (305)
T ss_pred CCCeEEEEechHHHHHHhhcCCeEE-eeCCc---ceeeccCCCCc-ccccccCEEEEECCHHhHHHHHHHHHhhCCCCCE
Confidence 35799999987666555432 211 01011 11111111111 1235899999976554444 345666777776
Q ss_pred EEEE
Q psy14971 89 LVFH 92 (156)
Q Consensus 89 Lv~~ 92 (156)
++..
T Consensus 100 vv~l 103 (305)
T PRK05708 100 LLLL 103 (305)
T ss_pred EEEE
Confidence 6554
No 413
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.46 E-value=2.5e+02 Score=23.99 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=31.8
Q ss_pred CCCEEEEEeCCHH-HHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 13 ERALVLILNHYMK-VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 13 ~~g~V~avD~~~~-~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.+..|+.+|.++. ......+.++. .| +++..++... ....+|.|+++.+.+
T Consensus 38 ~G~~V~~~d~~~~~~~~~~~~~l~~-~g------v~~~~~~~~~---~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 38 LGARVTVVDDGDDERHRALAAILEA-LG------ATVRLGPGPT---LPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEEeCCchhhhHHHHHHHHH-cC------CEEEECCCcc---ccCCCCEEEECCCcC
Confidence 3468999996553 43333445655 23 7777776443 124589999987764
No 414
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=36.39 E-value=1.5e+02 Score=22.90 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=38.6
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAA 71 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~ 71 (156)
+...+.+|+.++++++..+...+.++. .+ .+ +.++.+|..+... ..++.|.++.+++
T Consensus 30 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 30 LARAGAKVAILDRNQEKAEAVVAEIKA-AG-GE---ALAVKADVLDKESLEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Ce---EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444557999999998877666666655 23 24 7888899764210 1257899998876
No 415
>PRK05867 short chain dehydrogenase; Provisional
Probab=36.34 E-value=1.6e+02 Score=22.26 Aligned_cols=58 Identities=19% Similarity=0.042 Sum_probs=40.3
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.++. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 29 l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 29 YVEAGAQVAIAARHLDALEKLADEIGT-SG-GK---VVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHCCCEEEEEcCCHHHHHHHHHHHHh-cC-Ce---EEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 444567999999998888777777665 24 34 7788888764210 12578999998865
No 416
>KOG4058|consensus
Probab=36.06 E-value=1.1e+02 Score=23.07 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=50.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---HHHHhhCCCCcEEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---KEILAQLKPGGRLVF 91 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~~l~~~L~pGGrLv~ 91 (156)
-.-+++|.+|.++..+|-+.-++ |+..+ .+|..-|.... +..+|..+++-++.+-+| +.+..-|..|-+++.
T Consensus 96 ~~a~GvELNpwLVaysrl~a~R~-g~~k~--trf~RkdlwK~--dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 96 RPAVGVELNPWLVAYSRLHAWRA-GCAKS--TRFRRKDLWKV--DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred CcCCceeccHHHHHHHHHHHHHH-hcccc--hhhhhhhhhhc--cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 35679999999999999877664 76543 77887776542 345677777766655444 455656777888776
Q ss_pred E
Q psy14971 92 H 92 (156)
Q Consensus 92 ~ 92 (156)
.
T Consensus 171 c 171 (199)
T KOG4058|consen 171 C 171 (199)
T ss_pred E
Confidence 4
No 417
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.88 E-value=1.5e+02 Score=25.26 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred CchHH--HHHHhcC-CCCEEEEEeCC---HHHHHHHHHHHhhhcC------CCCccceEEEEccCCCCC---CC------
Q psy14971 1 MGDLN--VIVGIKG-ERALVLILNHY---MKVKSKNQNNKKLNIK------QNRKSFKNVSVKDGSKGH---AE------ 59 (156)
Q Consensus 1 ~G~la--~la~l~g-~~g~V~avD~~---~~~~~~A~~~l~~~~g------~~n~~~v~~~~gD~~~~~---~~------ 59 (156)
+|||. +++++++ ..++|+++=+. +...++-++++.. ++ -++ |+++.||..+.. .+
T Consensus 9 TGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~-~~~~~e~~~~r---i~vv~gDl~e~~lGL~~~~~~~L 84 (382)
T COG3320 9 TGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDL-YRHWDELSADR---VEVVAGDLAEPDLGLSERTWQEL 84 (382)
T ss_pred chHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhh-hhhhhhhhcce---EEEEecccccccCCCCHHHHHHH
Confidence 47888 4566665 45799998543 3344555555542 12 145 999999987632 21
Q ss_pred CCCcCEEEEccCCCc
Q psy14971 60 EGPYDIIHLGAACIE 74 (156)
Q Consensus 60 ~~~fD~I~i~~~~~~ 74 (156)
....|.||=+++.-+
T Consensus 85 a~~vD~I~H~gA~Vn 99 (382)
T COG3320 85 AENVDLIIHNAALVN 99 (382)
T ss_pred hhhcceEEecchhhc
Confidence 145899999888643
No 418
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.61 E-value=1.5e+02 Score=22.45 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=40.8
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
.+...+.+|+.++++++..+.+.+.++. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 26 ~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 26 ELARAGAAVAIADLNQDGANAVADEINK-AG-GK---AIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHCCCeEEEEeCChHHHHHHHHHHHh-cC-ce---EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 3445567899999999888777777765 34 24 7888899765211 12468998888765
No 419
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=35.57 E-value=42 Score=28.60 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.7
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+-|+|||+||+...
T Consensus 225 ~ELvpGG~mvl~~~ 238 (386)
T PLN02668 225 QEMKRGGAMFLVCL 238 (386)
T ss_pred HHhccCcEEEEEEe
Confidence 45999999999874
No 420
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=35.35 E-value=70 Score=25.44 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=42.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--C---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--K---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|...|. .+|++++.+++..+.++ . +|.+. ++..+.. + .......+|.++-..+........++
T Consensus 186 ~a~~~g~-~~v~~~~~~~~~~~~~~----~-~g~~~-----~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~ 254 (340)
T cd05284 186 ILRALTP-ATVIAVDRSEEALKLAE----R-LGADH-----VLNASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAK 254 (340)
T ss_pred HHHHhCC-CcEEEEeCCHHHHHHHH----H-hCCcE-----EEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHH
Confidence 3444442 57888888877655443 3 34321 1111110 0 01222469999876554344556688
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 255 ~l~~~g~~i~~ 265 (340)
T cd05284 255 LLAKGGRYVIV 265 (340)
T ss_pred HhhcCCEEEEE
Confidence 99999999874
No 421
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=35.18 E-value=98 Score=25.83 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--CCcCEEEEccCCCchHHHHHhhCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--GPYDIIHLGAACIEVPKEILAQLK 84 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~~fD~I~i~~~~~~i~~~l~~~L~ 84 (156)
+|++-| ++|+++=-.++-.+.+.+-+ |++.. |.....|..+.+.+. ...|..|=+-+- ++.++.+.+|+
T Consensus 170 iAKlkG--~rVVGiaGg~eK~~~l~~~l----GfD~~--idyk~~d~~~~L~~a~P~GIDvyfeNVGg-~v~DAv~~~ln 240 (340)
T COG2130 170 IAKLKG--CRVVGIAGGAEKCDFLTEEL----GFDAG--IDYKAEDFAQALKEACPKGIDVYFENVGG-EVLDAVLPLLN 240 (340)
T ss_pred HHHhhC--CeEEEecCCHHHHHHHHHhc----CCcee--eecCcccHHHHHHHHCCCCeEEEEEcCCc-hHHHHHHHhhc
Confidence 566654 79999999999988887654 44321 333333433322221 235665554443 67778888999
Q ss_pred CCcEEEEE
Q psy14971 85 PGGRLVFH 92 (156)
Q Consensus 85 pGGrLv~~ 92 (156)
+.+|+++.
T Consensus 241 ~~aRi~~C 248 (340)
T COG2130 241 LFARIPVC 248 (340)
T ss_pred cccceeee
Confidence 99998885
No 422
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.15 E-value=2.2e+02 Score=22.31 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---HHHhhCCCCcEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---EILAQLKPGGRL 89 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---~l~~~L~pGGrL 89 (156)
+..|+.++++++.++..+++ . +.+ +.. ... .........+..++|.|++......+.+ .+...+.++..+
T Consensus 23 g~~V~~~~r~~~~~~~~~~~--g-~~~~~~~--~~~-~~~~~~~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~i 96 (304)
T PRK06522 23 GHDVTLVARRGAHLDALNEN--G-LRLEDGE--ITV-PVLAADDPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPV 96 (304)
T ss_pred CCeEEEEECChHHHHHHHHc--C-CcccCCc--eee-cccCCCChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEE
Confidence 45899999987766554432 1 111 110 110 0001111111267999999877665543 344555555555
Q ss_pred EEE
Q psy14971 90 VFH 92 (156)
Q Consensus 90 v~~ 92 (156)
+..
T Consensus 97 v~~ 99 (304)
T PRK06522 97 LFL 99 (304)
T ss_pred EEe
Confidence 543
No 423
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=34.81 E-value=1.2e+02 Score=24.08 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=42.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCc
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGG 87 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGG 87 (156)
|...| .+|+.++.+++..+.+++. ... .-+ .. +..+.....+.+|.++-..+-. .....++.|+++|
T Consensus 183 a~~~g--~~vi~~~~~~~~~~~~~~~-~~~--~~~---~~----~~~~~v~~~~~~d~~ld~~g~~-~~~~~~~~l~~~G 249 (334)
T PRK13771 183 AKALG--AKVIAVTSSESKAKIVSKY-ADY--VIV---GS----KFSEEVKKIGGADIVIETVGTP-TLEESLRSLNMGG 249 (334)
T ss_pred HHHcC--CEEEEEeCCHHHHHHHHHH-HHH--hcC---ch----hHHHHHHhcCCCcEEEEcCChH-HHHHHHHHHhcCC
Confidence 44444 6899999998888887543 221 111 11 1000000112488888654433 3456788899999
Q ss_pred EEEEEe
Q psy14971 88 RLVFHK 93 (156)
Q Consensus 88 rLv~~~ 93 (156)
+++..-
T Consensus 250 ~~v~~g 255 (334)
T PRK13771 250 KIIQIG 255 (334)
T ss_pred EEEEEe
Confidence 988753
No 424
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.58 E-value=2.1e+02 Score=21.96 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=31.6
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++....+..++..+. +.-.+ +.++..|..+.. ...++.|.++.+++.
T Consensus 29 la~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 29 LHNAGAKLVFTYAGERLEKEVRELADT-LEGQE---SLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHCCCEEEEecCcccchHHHHHHHHH-cCCCc---eEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECccc
Confidence 344567888886653222222222222 22134 778888886421 112678999887753
No 425
>PRK13687 hypothetical protein; Provisional
Probab=34.42 E-value=1e+02 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEc
Q psy14971 76 PKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~ 109 (156)
....+..|+.||++...-...+- ...+..+++.
T Consensus 7 EQRvLHvLAqGGrI~~~rd~~gr-i~~v~C~TRe 39 (85)
T PRK13687 7 EQRTLHVLAQGGRIEHERDDSGR-ITAVECYTRE 39 (85)
T ss_pred HHHHHHHHhcCCeEEEEECCCCc-EEEEEEEccC
Confidence 45678899999999997765443 4556677775
No 426
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=34.26 E-value=1.5e+02 Score=23.27 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=42.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|++++.+++..+.+++ +|.+. +--...+..+ .. ....+|.++-..+. ......++.|
T Consensus 166 ~a~~~g--~~v~~~~~~~~~~~~~~~-----~g~~~---v~~~~~~~~~~~~~~-~~~~~d~vld~~g~-~~~~~~~~~l 233 (326)
T cd08289 166 ILAKLG--YEVVASTGKADAADYLKK-----LGAKE---VIPREELQEESIKPL-EKQRWAGAVDPVGG-KTLAYLLSTL 233 (326)
T ss_pred HHHHCC--CeEEEEecCHHHHHHHHH-----cCCCE---EEcchhHHHHHHHhh-ccCCcCEEEECCcH-HHHHHHHHHh
Confidence 345554 578888888876665532 24321 1101100000 11 12458988755443 4455678899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
+++|+++..-
T Consensus 234 ~~~G~~i~~g 243 (326)
T cd08289 234 QYGGSVAVSG 243 (326)
T ss_pred hcCCEEEEEe
Confidence 9999998864
No 427
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=34.20 E-value=78 Score=25.26 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.++-..+........++.|+++|+++..-
T Consensus 226 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 226 RGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 359999876544445566789999999988753
No 428
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=33.99 E-value=2.1e+02 Score=21.66 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=40.2
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
++...+.+|+.++++++.++...+.++. .|. + +.++.+|..+.. ...++.|.++.+++.
T Consensus 29 ~l~~~G~~V~~~~r~~~~~~~~~~~i~~-~~~-~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 29 GLAQAGAEVILNGRDPAKLAAAAESLKG-QGL-S---AHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHHHHh-cCc-e---EEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3444567999999998877776666665 242 4 778888876421 112568999998875
No 429
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=33.93 E-value=70 Score=23.48 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=26.0
Q ss_pred eEEEEccCCCCCCCCCCcCEEEEccCCCch-----HHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHAEEGPYDIIHLGAACIEV-----PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-----~~~l~~~L~pGGrLv~~~~ 94 (156)
+.+..+- ..+....||.|++--+...- -..+...|++||.|+++=.
T Consensus 56 ~~~~f~~---~~~~~~~~D~vvly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 56 VQFHFGA---ELPADQDFDTVVLYWPKAKAEAQYLLANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp EEE-SS-----HHHHTT-SEEEEE--SSHHHHHHHHHHHHTTS-TT-EEEEEEE
T ss_pred ceEeeec---cCCcccCCCEEEEEccCcHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5555432 12334579999998877642 2467889999999999643
No 430
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=33.82 E-value=30 Score=25.33 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCCCcCEEEEccCCCc--hH---HHHHhhCCCCcEEEEEeccCCC
Q psy14971 59 EEGPYDIIHLGAACIE--VP---KEILAQLKPGGRLVFHKGLHNG 98 (156)
Q Consensus 59 ~~~~fD~I~i~~~~~~--i~---~~l~~~L~pGGrLv~~~~~~~~ 98 (156)
+...||.||++.++.. +| ..++++..-.|.-|+++.+.++
T Consensus 70 d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~~~~gK~v~~F~T~gg 114 (156)
T PF12682_consen 70 DLSDYDTIFLGTPVWWGTPPPPVRTFLEQYDFSGKTVIPFCTSGG 114 (156)
T ss_dssp -GGG-SEEEEEEEEETTEE-CHHHHHHHCTTTTTSEEEEEEE-SS
T ss_pred CcccCCEEEEechHHcCCCCHHHHHHHHhcCCCCCcEEEEEeeCC
Confidence 3467999999998862 33 4566666667888888876543
No 431
>KOG3924|consensus
Probab=33.65 E-value=1.1e+02 Score=26.26 Aligned_cols=91 Identities=18% Similarity=0.106 Sum_probs=58.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh------cCC-CCccceEEEEccCCCCCCC---CCCcCEEEEccC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN------IKQ-NRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~------~g~-~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~ 71 (156)
|-+.+.....+....=+|+|+.+...+.|..+.+.+ +|- .|. ++.++|+....-.. ...-+.|+++..
T Consensus 204 Gqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~--~~~i~gsf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 204 GQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK--IETIHGSFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred chhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc--eeecccccCCHHHHHHHhhcceEEEEecc
Confidence 444554444444567788998888888877665332 453 343 78888887643111 245688888876
Q ss_pred CCchH-----HHHHhhCCCCcEEEEEec
Q psy14971 72 CIEVP-----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 72 ~~~i~-----~~l~~~L~pGGrLv~~~~ 94 (156)
.-.-+ +.++..+++|-|++-+..
T Consensus 282 ~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 282 AFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred cCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 53221 277889999999998643
No 432
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=33.61 E-value=2e+02 Score=24.15 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=34.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--C--CCCCCcCEEEEccCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--H--AEEGPYDIIHLGAAC 72 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~--~~~~~fD~I~i~~~~ 72 (156)
.+..|+.+|.+++.++..++.. .+ +.++.||+.+. + .....+|.+++...-
T Consensus 253 ~~~~v~vid~~~~~~~~~~~~~------~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 253 EGYSVKLIERDPERAEELAEEL------PN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCeEEEEECCHHHHHHHHHHC------CC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 3578999999999887766542 23 67889998642 1 123468888876553
No 433
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=33.44 E-value=77 Score=25.34 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+|.|+-............+.|+++|+++..-.
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 4589888754433344456889999999988743
No 434
>PRK06949 short chain dehydrogenase; Provisional
Probab=33.41 E-value=1.6e+02 Score=22.23 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=39.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++.....++. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 29 l~~~G~~Vi~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 29 LAQAGAKVVLASRRVERLKELRAEIEA-EG-GA---AHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 334456899999999888777776654 23 24 7888889764210 12468999998874
No 435
>PRK07478 short chain dehydrogenase; Provisional
Probab=33.19 E-value=2.1e+02 Score=21.57 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=40.4
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-++...+.++. .+ .+ +.++.+|..+.. ...++.|.++.+++.
T Consensus 26 l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 26 FAREGAKVVVGARRQAELDQLVAEIRA-EG-GE---AVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 344457999999998887777777765 34 34 788888876421 112478999998865
No 436
>PRK07102 short chain dehydrogenase; Provisional
Probab=32.86 E-value=2e+02 Score=21.55 Aligned_cols=59 Identities=7% Similarity=-0.019 Sum_probs=38.4
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------C-CCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------E-EGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~-~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-.+...+++.. .+-.+ +.++.+|..+... . ...+|.++.+++.
T Consensus 21 l~~~G~~Vi~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 21 YAAAGARLYLAARDVERLERLADDLRA-RGAVA---VSTHELDILDTASHAAFLDSLPALPDIVLIAVGT 86 (243)
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHH-hcCCe---EEEEecCCCChHHHHHHHHHHhhcCCEEEECCcC
Confidence 444457899999998876655555544 13345 8899999865311 0 1357999987653
No 437
>PRK07326 short chain dehydrogenase; Provisional
Probab=32.61 E-value=1.8e+02 Score=21.52 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=37.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++..+...+.+.. . .. +.++.+|..+... ..++.|.||..++.
T Consensus 26 l~~~g~~V~~~~r~~~~~~~~~~~l~~--~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 26 LLAEGYKVAITARDQKELEEAAAELNN--K-GN---VLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHCCCEEEEeeCCHHHHHHHHHHHhc--c-Cc---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344456899999998777666655543 1 34 8888888764210 11468999987754
No 438
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.59 E-value=2.6e+02 Score=23.50 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=34.5
Q ss_pred HhcCCCCEEEEEeCCH-HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 9 GIKGERALVLILNHYM-KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~-~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.+...+..|+.+|.++ +.++...+.+.. . + ++++.+|..+. ..+.+|.|+.+.+.+
T Consensus 23 ~l~~~G~~V~~~d~~~~~~~~~~~~~l~~-~---~---~~~~~~~~~~~--~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 23 FLKKLGAKVILTDEKEEDQLKEALEELGE-L---G---IELVLGEYPEE--FLEGVDLVVVSPGVP 79 (450)
T ss_pred HHHHCCCEEEEEeCCchHHHHHHHHHHHh-c---C---CEEEeCCcchh--HhhcCCEEEECCCCC
Confidence 3445568999999985 333332233443 2 3 67777776542 235699999988754
No 439
>PRK07832 short chain dehydrogenase; Provisional
Probab=32.52 E-value=2.3e+02 Score=21.82 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=37.9
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+..|+.++++++.++...+.++. .+... +.++.+|..+.. ...++.|.++.+++.
T Consensus 20 la~~G~~vv~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 88 (272)
T PRK07832 20 LAAQGAELFLTDRDADGLAQTVADARA-LGGTV---PEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGI 88 (272)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCCc---ceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 344457899999998877776666655 34323 455677875421 112468999998864
No 440
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.46 E-value=2.3e+02 Score=21.66 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=41.6
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++...+.+|+.++.+++-++.+.+.++. .+. + +.++.+|..+... ..++.|.++.+++.
T Consensus 29 ~l~~~G~~vv~~~~~~~~~~~~~~~~~~-~~~-~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 29 AYAKAGATIVFNDINQELVDKGLAAYRE-LGI-E---AHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHCCCeEEEEeCCHHHHHHHHHHHHh-cCC-c---eEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 3444567899999999888777777765 342 4 8888899864211 12568999998875
No 441
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=32.37 E-value=83 Score=23.36 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=19.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKL 36 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~ 36 (156)
+-.|+-+|.+++.++.+++++++
T Consensus 22 G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 22 GYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp TSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CCcEEEEECChHHHHhhhhHHHH
Confidence 47999999999999998887664
No 442
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.35 E-value=2.5e+02 Score=22.14 Aligned_cols=58 Identities=16% Similarity=-0.008 Sum_probs=40.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.+.. .+. . +.++.+|..+... ..++.|.++.+++.
T Consensus 60 La~~G~~Vi~~~R~~~~l~~~~~~l~~-~~~-~---~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 60 FARRGATVVAVARREDLLDAVADRITR-AGG-D---AMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHh-cCC-c---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334457999999999888777776655 342 4 7788889764210 12478999998864
No 443
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=32.34 E-value=84 Score=25.87 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=41.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-----cCCC---CCCCCCCcCEEEEccCCC-chHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-----DGSK---GHAEEGPYDIIHLGAACI-EVPK 77 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-----D~~~---~~~~~~~fD~I~i~~~~~-~i~~ 77 (156)
+|+..| ..+|++++.+++..+.+++ +|.+. + +... +... .......+|.|+-..+-. ...+
T Consensus 222 lA~~~G-~~~vi~~~~~~~~~~~~~~-----~g~~~---~-v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~ 291 (384)
T cd08265 222 LAKAAG-ASKVIAFEISEERRNLAKE-----MGADY---V-FNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIP 291 (384)
T ss_pred HHHHcC-CCEEEEEcCCHHHHHHHHH-----cCCCE---E-EcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHH
Confidence 344554 1379999988886555443 34422 1 1111 1000 011234589888654432 2445
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
..++.|+++|+++..
T Consensus 292 ~~~~~l~~~G~~v~~ 306 (384)
T cd08265 292 QMEKSIAINGKIVYI 306 (384)
T ss_pred HHHHHHHcCCEEEEE
Confidence 667889999999874
No 444
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=32.21 E-value=1.1e+02 Score=26.98 Aligned_cols=66 Identities=12% Similarity=-0.042 Sum_probs=40.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-HHHHHhhCCCCcEEE
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV-PKEILAQLKPGGRLV 90 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-~~~l~~~L~pGGrLv 90 (156)
+-+.+|+.+|+++.....|.. .|. ++. +..+. ....|+|++..+..++ ....++++|||++|+
T Consensus 275 a~Ga~ViV~e~dp~~a~~A~~-----~G~------~~~--~leel---l~~ADIVI~atGt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 275 GFGARVVVTEIDPICALQAAM-----EGY------QVV--TLEDV---VETADIFVTATGNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred HCCCEEEEEeCCchhHHHHHh-----cCc------eec--cHHHH---HhcCCEEEECCCcccccCHHHHhccCCCcEEE
Confidence 334689999999875433322 132 211 11111 1357999987665554 457888999999988
Q ss_pred EEe
Q psy14971 91 FHK 93 (156)
Q Consensus 91 ~~~ 93 (156)
-.-
T Consensus 339 NvG 341 (476)
T PTZ00075 339 NIG 341 (476)
T ss_pred EcC
Confidence 753
No 445
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.10 E-value=2e+02 Score=22.10 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=40.3
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-++.+.+.++. ..-.+ +.++.+|..+... ..++.|.++.+++.
T Consensus 28 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 28 LARAGADVILLSRNEENLKKAREKIKS-ESNVD---VSYIVADLTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-hcCCc---eEEEEecCCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 444567999999998887777777654 22235 8888889865210 12568999988764
No 446
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.96 E-value=2.1e+02 Score=21.57 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=39.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-.+...+.++. .+ .+ +.++..|..+... ..++.|.++.+++.
T Consensus 25 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 25 AARAGADVVLAARTAERLDEVAAEIDD-LG-RR---ALAVPTDITDEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHH-hC-Cc---eEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 444457999999999877766666654 24 34 7888889764211 12568999998864
No 447
>PRK06482 short chain dehydrogenase; Provisional
Probab=31.72 E-value=2.1e+02 Score=21.92 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=36.1
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+++..+.+|+.++++++.++..++.. + .+ +.++.+|..+.. ...++.|.||.+++.
T Consensus 21 ~L~~~g~~v~~~~r~~~~~~~~~~~~----~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 21 RLLARGDRVAATVRRPDALDDLKARY----G-DR---LWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHhc----c-Cc---eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 44555679999999987654433321 2 24 888889986531 012467999998764
No 448
>KOG1197|consensus
Probab=31.71 E-value=1.2e+02 Score=24.81 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
|++.++ .++++.-...+-.+.|++|=.++ - |....-|... .+......|+++=.-+..... .-+..|
T Consensus 166 l~ra~~--a~tI~~asTaeK~~~akenG~~h----~---I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~-~sl~~L 235 (336)
T KOG1197|consen 166 LLRAVG--AHTIATASTAEKHEIAKENGAEH----P---IDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFA-KSLAAL 235 (336)
T ss_pred HHHhcC--cEEEEEeccHHHHHHHHhcCCcc----e---eeccchhHHHHHHhccCCCCceeeeccccchhhH-HHHHHh
Confidence 344554 79999999999999999885542 0 2222233211 112234477777666665554 346799
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
|++|.+|-.
T Consensus 236 k~~G~mVSf 244 (336)
T KOG1197|consen 236 KPMGKMVSF 244 (336)
T ss_pred ccCceEEEe
Confidence 999999874
No 449
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=31.69 E-value=82 Score=26.14 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=26.7
Q ss_pred CCcCEEEEccCCCch-----HHHHHhhCCCCcEEEEEecc
Q psy14971 61 GPYDIIHLGAACIEV-----PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i-----~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+||.|++-.+...- -..+...|+|||.|++.-..
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 579999998877642 23567899999999997543
No 450
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=31.62 E-value=2.6e+02 Score=22.12 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCC---CCCCCCCcCEEEEccCCCchHHHHHhh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSK---GHAEEGPYDIIHLGAACIEVPKEILAQ 82 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~ 82 (156)
+|+..| .+|+.+..+++..+.++ . +|.+. +--... +..+ .+.....+|.++-+..........++.
T Consensus 185 ~a~~~g--~~v~~~~~~~~~~~~~~----~-~g~~~---v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~ 254 (341)
T cd08297 185 YAKAMG--LRVIAIDVGDEKLELAK----E-LGADA---FVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDY 254 (341)
T ss_pred HHHHCC--CeEEEEeCCHHHHHHHH----H-cCCcE---EEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHH
Confidence 445554 48899988887666553 2 24322 111111 1000 011234699998655544555567889
Q ss_pred CCCCcEEEEEe
Q psy14971 83 LKPGGRLVFHK 93 (156)
Q Consensus 83 L~pGGrLv~~~ 93 (156)
|+++|+++..-
T Consensus 255 l~~~g~~v~~g 265 (341)
T cd08297 255 LRPGGTLVCVG 265 (341)
T ss_pred hhcCCEEEEec
Confidence 99999999864
No 451
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.48 E-value=1.8e+02 Score=22.85 Aligned_cols=67 Identities=9% Similarity=-0.074 Sum_probs=38.0
Q ss_pred chHH--HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCC--C-CCCcCEEEEccCC
Q psy14971 2 GDLN--VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHA--E-EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la--~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~--~-~~~fD~I~i~~~~ 72 (156)
|++. +..+++..+.+|+++.++++........... .+ .++ ++++.+|..+... . ...+|.||..++.
T Consensus 14 GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~---~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~ 86 (322)
T PLN02662 14 GYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLAL-DGAKER---LHLFKANLLEEGSFDSVVDGCEGVFHTASP 86 (322)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhc-cCCCCc---eEEEeccccCcchHHHHHcCCCEEEEeCCc
Confidence 5665 2334555556899988876543322222111 12 135 8999999875321 1 1357998887753
No 452
>PRK07774 short chain dehydrogenase; Provisional
Probab=31.11 E-value=2.3e+02 Score=21.23 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=38.0
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-.+...+.+.. .+ .+ +.++..|..+... ..++.|.+|.+++.
T Consensus 26 l~~~g~~vi~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 26 LAREGASVVVADINAEGAERVAKQIVA-DG-GT---AIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 334457999999998766666555544 12 24 6778888765311 11468999998875
No 453
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=31.06 E-value=2.4e+02 Score=21.40 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=39.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++.+++-++...+.+.. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 32 l~~~G~~V~~~~r~~~~~~~~~~~i~~-~~-~~---~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 32 LGEAGARVVLSARKAEELEEAAAHLEA-LG-ID---ALWIAADVADEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHh-cC-Ce---EEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 333456899999998877777666655 23 24 7888999875211 12468999998864
No 454
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=31.03 E-value=1.4e+02 Score=23.68 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.++-..+.. .....++.|+++|+++..-
T Consensus 226 ~~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 226 GKFDVILDTVGGD-TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CCCCEEEECCChH-HHHHHHHHhccCCEEEEec
Confidence 4589999766554 4456789999999998753
No 455
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=30.93 E-value=72 Score=23.24 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=30.2
Q ss_pred eEEEEccC-CCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDG-SKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~-~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
..++.+|- ....+....+|.+++--. ..-....+.|+|||.+++...
T Consensus 40 ~~vris~~~~~~~~~~~~~Dilv~l~~--~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 40 SHVRISDEPIIPSPPVGEADILVALDP--EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp EEEEEESS--SSSS-TSSESEEEESSH--HHHHHCGTTCETTEEEEEETT
T ss_pred EEEEEecCcCccCcccCCCCEEEEcCH--HHHHHHhcCcCcCeEEEEECC
Confidence 56677774 222333467999998533 112255778999999999764
No 456
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=30.89 E-value=2.7e+02 Score=21.98 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=38.9
Q ss_pred chHH--HHHHhcCCC--CEEEEEeCCHHH---HHHHHHHHhhhcCC-------CCccceEEEEccCCCCC---CC-----
Q psy14971 2 GDLN--VIVGIKGER--ALVLILNHYMKV---KSKNQNNKKLNIKQ-------NRKSFKNVSVKDGSKGH---AE----- 59 (156)
Q Consensus 2 G~la--~la~l~g~~--g~V~avD~~~~~---~~~A~~~l~~~~g~-------~n~~~v~~~~gD~~~~~---~~----- 59 (156)
|++. ++.+++..+ .+|+++.++++- .+..++.++. .++ .+ ++++.+|..+.. ..
T Consensus 9 G~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~---v~~~~~D~~~~~~gl~~~~~~~ 84 (367)
T TIGR01746 9 GFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRS-YRLWQEDLARER---IEVVAGDLSEPRLGLSDAEWER 84 (367)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHH-hCCCCchhhhCC---EEEEeCCcCcccCCcCHHHHHH
Confidence 6666 334455443 679999887652 2233334433 122 24 999999976431 10
Q ss_pred -CCCcCEEEEccCC
Q psy14971 60 -EGPYDIIHLGAAC 72 (156)
Q Consensus 60 -~~~fD~I~i~~~~ 72 (156)
....|.|+..++.
T Consensus 85 ~~~~~d~vih~a~~ 98 (367)
T TIGR01746 85 LAENVDTIVHNGAL 98 (367)
T ss_pred HHhhCCEEEeCCcE
Confidence 1458999988764
No 457
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=30.84 E-value=12 Score=27.45 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----------CC--------CCCCcCEEEE
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----------HA--------EEGPYDIIHL 68 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----------~~--------~~~~fD~I~i 68 (156)
+..+| .+|+.+|..++.++..+.+... . +.+...+-.+. .. ...++|.|++
T Consensus 39 ~~~lG--a~v~~~d~~~~~~~~~~~~~~~-----~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~ 108 (168)
T PF01262_consen 39 AKGLG--AEVVVPDERPERLRQLESLGAY-----F---IEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIG 108 (168)
T ss_dssp HHHTT---EEEEEESSHHHHHHHHHTTTE-----E---SEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEE
T ss_pred HhHCC--CEEEeccCCHHHHHhhhcccCc-----e---EEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEee
Confidence 44454 7999999999888766554332 1 33321111110 00 0146799998
Q ss_pred ccCCCc------hHHHHHhhCCCCcEEEEEe
Q psy14971 69 GAACIE------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 69 ~~~~~~------i~~~l~~~L~pGGrLv~~~ 93 (156)
++..+. +.+...+.|+|| .+|+.+
T Consensus 109 ~~~~~~~~~P~lvt~~~~~~m~~g-svIvDi 138 (168)
T PF01262_consen 109 NGLYWGKRAPRLVTEEMVKSMKPG-SVIVDI 138 (168)
T ss_dssp HHHBTTSS---SBEHHHHHTSSTT-EEEEET
T ss_pred ecccCCCCCCEEEEhHHhhccCCC-ceEEEE
Confidence 776542 335678889965 444444
No 458
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.62 E-value=51 Score=19.23 Aligned_cols=17 Identities=0% Similarity=-0.107 Sum_probs=14.2
Q ss_pred EEEeCCHHHHHHHHHHH
Q psy14971 18 LILNHYMKVKSKNQNNK 34 (156)
Q Consensus 18 ~avD~~~~~~~~A~~~l 34 (156)
+.+|+|+++++.|++-.
T Consensus 3 Tti~iDd~Ll~eA~~l~ 19 (47)
T PF09957_consen 3 TTIDIDDELLAEAMRLT 19 (47)
T ss_pred ceEeeCHHHHHHHHHHh
Confidence 57999999999998654
No 459
>PRK07201 short chain dehydrogenase; Provisional
Probab=30.40 E-value=2.1e+02 Score=25.34 Aligned_cols=66 Identities=18% Similarity=0.076 Sum_probs=39.1
Q ss_pred chHH--HHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--------CCCCcCEEEEc
Q psy14971 2 GDLN--VIVGIK--GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--------EEGPYDIIHLG 69 (156)
Q Consensus 2 G~la--~la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--------~~~~fD~I~i~ 69 (156)
|+++ ++..++ ..+.+|+++++++.... ....... .+..+ ++++.+|..+... ....+|.||-.
T Consensus 10 GfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~-~~~~~~~-~~~~~---v~~~~~Dl~~~~~~~~~~~~~~l~~~D~Vih~ 84 (657)
T PRK07201 10 GFIGRRLVSRLLDRRREATVHVLVRRQSLSR-LEALAAY-WGADR---VVPLVGDLTEPGLGLSEADIAELGDIDHVVHL 84 (657)
T ss_pred cHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHh-cCCCc---EEEEecccCCccCCcCHHHHHHhcCCCEEEEC
Confidence 6776 334555 35679999999754322 2222222 23345 9999999865211 01468999877
Q ss_pred cCC
Q psy14971 70 AAC 72 (156)
Q Consensus 70 ~~~ 72 (156)
++.
T Consensus 85 Aa~ 87 (657)
T PRK07201 85 AAI 87 (657)
T ss_pred cee
Confidence 754
No 460
>PRK06172 short chain dehydrogenase; Provisional
Probab=29.85 E-value=2.3e+02 Score=21.36 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=41.3
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
.+...+.+|+.++++++-++...+.++. .+ .+ +.++.+|..+... ..++.|.|+.+++.
T Consensus 26 ~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 26 AFAREGAKVVVADRDAAGGEETVALIRE-AG-GE---ALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---eEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3444557999999999887777777765 34 35 8889999865210 12468999998864
No 461
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.62 E-value=2.2e+02 Score=21.57 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=38.0
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---------C--CCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---------E--EGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---------~--~~~fD~I~i~~~~~ 73 (156)
++..+.+|+.++++++-++...+.+. -.+ +.++.+|..+... . .+++|.++.+++..
T Consensus 21 l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~---~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 21 FAAEGWRVGAYDINEAGLAALAAELG----AGN---AWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhc----CCc---eEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 44456799999999886665544432 135 8889999865210 0 35789999988753
No 462
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=29.48 E-value=87 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=23.0
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.++-..+-. ......+.|+++|+++..-
T Consensus 178 ~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 178 RGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred CCceEEEeCCCch-HHHHHHHhcccCceEEEee
Confidence 3588888654433 5556788999999998754
No 463
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=29.13 E-value=1.6e+02 Score=22.10 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEec
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
+..|.+++-... .+ ....+.|+|||.+++...
T Consensus 67 ~~~D~lva~d~~-~~-~~~~~~lk~gg~ii~n~~ 98 (197)
T PRK06853 67 GKADLLLAFEPL-EA-LRYLPYLKKGGKVVVNTQ 98 (197)
T ss_pred CCCCEEEEeCHH-HH-HHHHHhcCCCcEEEEECC
Confidence 378999986652 22 345678999999998753
No 464
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=29.10 E-value=91 Score=25.07 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=41.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---C---CCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---G---HAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~---~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. ..|++++.+++..+.++ . +|.+. ++..+... . ......+|.++-..+-.......+
T Consensus 193 ~a~~~G~-~~v~~~~~~~~~~~~~~----~-~g~~~-----v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~ 261 (350)
T cd08256 193 AARLKNP-KKLIVLDLKDERLALAR----K-FGADV-----VLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGL 261 (350)
T ss_pred HHHHcCC-cEEEEEcCCHHHHHHHH----H-cCCcE-----EecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHH
Confidence 4555553 46888888877665443 2 34321 11111100 0 111235898886544333445578
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.|+++|+++..
T Consensus 262 ~~l~~~G~~v~~ 273 (350)
T cd08256 262 NMIRKLGRFVEF 273 (350)
T ss_pred HHhhcCCEEEEE
Confidence 899999999875
No 465
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=29.02 E-value=1.1e+02 Score=25.84 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-HHHHhhC---CCCcE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP-KEILAQL---KPGGR 88 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~-~~l~~~L---~pGGr 88 (156)
-.|+-+|-.+.-.+..++.++. .+++= +.+-.|+...-+....+.|.|+++...+++. ..++++| .|.++
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~-~~y~v---~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~ 88 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRM-IGYRV---IEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTR 88 (360)
T ss_pred ceEEEecCchhHHHHHHHHHHh-cccce---eeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcCCccc
Confidence 4788999999999999999987 45533 4444455322223345699999999888765 2343333 45555
No 466
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=29.00 E-value=55 Score=16.32 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=27.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCC--CCCCCcCEEEEccC
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGH--AEEGPYDIIHLGAA 71 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~--~~~~~fD~I~i~~~ 71 (156)
++..+|.++.......+.+.. .+. ++... +..... .....+|.++++..
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~-~~~------~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 53 (55)
T smart00448 2 RILVVDDDPLLRELLKALLER-EGY------EVDEATDGEEALELLKEEKPDLILLDIM 53 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhh-cCc------EEEEeCCHHHHHHHHHhcCCCEEEEecc
Confidence 467788888888777777765 342 22222 221111 12346888888653
No 467
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.97 E-value=3.6e+02 Score=24.16 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=51.8
Q ss_pred HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCchHH---H
Q psy14971 7 IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIEVPK---E 78 (156)
Q Consensus 7 la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~i~~---~ 78 (156)
+++.+ ..+-.|+.+|.|++.++.+++ .| ..++.||+.+.. ..-...|.+++...-.+... .
T Consensus 415 va~~L~~~g~~vvvID~d~~~v~~~~~-----~g------~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 415 IGRLLMANKMRITVLERDISAVNLMRK-----YG------YKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHh-----CC------CeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHH
Confidence 44443 334689999999999887753 23 457999997631 12346788888766554332 2
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|.-++++-..+
T Consensus 484 ~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 484 LCQQHFPHLHILARARG 500 (601)
T ss_pred HHHHHCCCCeEEEEeCC
Confidence 35677888888886654
No 468
>PRK05650 short chain dehydrogenase; Provisional
Probab=28.94 E-value=1.9e+02 Score=22.13 Aligned_cols=59 Identities=10% Similarity=-0.103 Sum_probs=40.4
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++...+.+|+.++++++-++.+...++. .+ .+ +.++.+|..+... ..+++|.++.+++.
T Consensus 19 ~l~~~g~~V~~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 19 RWAREGWRLALADVNEEGGEETLKLLRE-AG-GD---GFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3444567999999998877777766665 23 34 7888889764211 12478999998764
No 469
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=28.92 E-value=1.5e+02 Score=23.27 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=41.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|+.++.+++..+.+++.+ |.+.. +.....+..+ ... .+.+|.++-..+. ......++.|
T Consensus 165 ~a~~~G--~~vi~~~~~~~~~~~~~~~~----g~~~~--~~~~~~~~~~~v~~~~-~~~~d~vi~~~g~-~~~~~~~~~l 234 (329)
T cd05288 165 IAKLLG--ARVVGIAGSDEKCRWLVEEL----GFDAA--INYKTPDLAEALKEAA-PDGIDVYFDNVGG-EILDAALTLL 234 (329)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHhhc----CCceE--EecCChhHHHHHHHhc-cCCceEEEEcchH-HHHHHHHHhc
Confidence 344444 58888888888777665432 32110 1100001000 011 1468988865443 3445668889
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
+++|+++..
T Consensus 235 ~~~G~~v~~ 243 (329)
T cd05288 235 NKGGRIALC 243 (329)
T ss_pred CCCceEEEE
Confidence 999998865
No 470
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.88 E-value=2.7e+02 Score=21.31 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=34.6
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-++...+ . ++ .+ +.++.+|..+.. ...++.|.++.+++.
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~---~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 26 LVAAGARVAIVDIDADNGAAVAA---S-LG-ER---ARFIATDITDDAAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHH---H-hC-Ce---eEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34445799999999765443332 2 23 24 788888986521 012468999988764
No 471
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.85 E-value=1.4e+02 Score=23.86 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|...|. ..|++++.+++..+.+++ +|.+. ++...... .......+|.++-..+........+
T Consensus 187 lak~~G~-~~v~~~~~~~~~~~~~~~-----~ga~~-----v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~ 255 (345)
T cd08287 187 AAKRLGA-ERIIAMSRHEDRQALARE-----FGATD-----IVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAI 255 (345)
T ss_pred HHHHcCC-CEEEEECCCHHHHHHHHH-----cCCce-----EecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHH
Confidence 4555542 358888888765555442 24311 11111100 0112235899987554444445678
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.|+++|+++..
T Consensus 256 ~~l~~~g~~v~~ 267 (345)
T cd08287 256 AIARPGGRVGYV 267 (345)
T ss_pred HhhccCCEEEEe
Confidence 899999999864
No 472
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=28.63 E-value=1.9e+02 Score=21.39 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=34.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCc
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIE 74 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~ 74 (156)
-+|.-+|-++...+..+..++. .+..+ +.....++.+.+. ....+|+|+++...+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~-~~~~~---~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~ 61 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQ-IEWVN---VVGEFEDSTALINNLPKLDAHVLITDLSMPG 61 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhc-CCCCE---EEEEECCHHHHHHHHHhCCCCEEEEeCcCCC
Confidence 4788999999998888888865 23211 2222333333221 2346899999986654
No 473
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=28.36 E-value=78 Score=26.73 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=22.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNN 33 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~ 33 (156)
|++.. +|..+..+-.|+++|++++.++..++.
T Consensus 9 GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 9 GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence 55553 333332346799999999999988763
No 474
>PRK09135 pteridine reductase; Provisional
Probab=28.30 E-value=2.5e+02 Score=20.83 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=35.5
Q ss_pred hcCCCCEEEEEeCC-HHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHY-MKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~-~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++.+ ++..+.....+.. ....+ +.++.+|..+... ..+..|.||..++.
T Consensus 26 l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 26 LHAAGYRVAIHYHRSAAEADALAAELNA-LRPGS---AAALQADLLDPDALPELVAACVAAFGRLDALVNNASS 95 (249)
T ss_pred HHHCCCEEEEEcCCCHHHHHHHHHHHHh-hcCCc---eEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34456799999975 4444444444443 22234 8889999865211 01357999988864
No 475
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=28.21 E-value=1.8e+02 Score=23.48 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=41.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC----CCC-CCCCcCEEEEccCCCchHH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK----GHA-EEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~----~~~-~~~~fD~I~i~~~~~~i~~ 77 (156)
=+.++-|+|+..++.|+.++..+-++.+. |+++.-.-.. +.- ....||+..++.+.+.-.+
T Consensus 103 wrfvGseid~~sl~sA~~ii~~N~~l~~~--I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~ 168 (292)
T COG3129 103 WRFVGSEIDSQSLSSAKAIISANPGLERA--IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAA 168 (292)
T ss_pred ceeecCccCHHHHHHHHHHHHcCcchhhh--eeEEeccCccccccccccccceeeeEecCCCcchhHH
Confidence 36889999999999999998764133332 6666543222 221 2468999999998875443
No 476
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=28.15 E-value=1.8e+02 Score=24.92 Aligned_cols=63 Identities=14% Similarity=0.009 Sum_probs=38.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-HHHHHhhCCCCcEEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV-PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-~~~l~~~L~pGGrLv~~ 92 (156)
+.+|+.+|+++.....|+ . .|.. +. +..+.. ...|.++...+...+ ....+.++|+|++++..
T Consensus 218 Ga~ViV~d~dp~r~~~A~----~-~G~~------v~--~leeal---~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 218 GARVIVTEVDPIRALEAA----M-DGFR------VM--TMEEAA---KIGDIFITATGNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred cCEEEEEeCChhhHHHHH----h-cCCE------eC--CHHHHH---hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 478999999997543333 2 2431 11 111111 236998876655554 45578899999988874
No 477
>KOG4589|consensus
Probab=28.15 E-value=1e+02 Score=24.05 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=47.1
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCC---------CCCCCCcCEEEEccCCCc--
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKG---------HAEEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~---------~~~~~~fD~I~i~~~~~~-- 74 (156)
.-+.++|.|.|.+||+-. +. -.+. +.++.+ |..+. ++ +.+.|+|+++++...
T Consensus 87 avqr~~p~g~v~gVDllh---------~~---p~~G---a~~i~~~dvtdp~~~~ki~e~lp-~r~VdvVlSDMapnaTG 150 (232)
T KOG4589|consen 87 AVQRVNPNGMVLGVDLLH---------IE---PPEG---ATIIQGNDVTDPETYRKIFEALP-NRPVDVVLSDMAPNATG 150 (232)
T ss_pred HHHhhCCCceEEEEeeee---------cc---CCCC---cccccccccCCHHHHHHHHHhCC-CCcccEEEeccCCCCcC
Confidence 346788999999999852 21 1223 566666 55432 22 367899999886431
Q ss_pred --hHH-------------HHHhhCCCCcEEEEEecc
Q psy14971 75 --VPK-------------EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --i~~-------------~l~~~L~pGGrLv~~~~~ 95 (156)
+.+ .....++|+|.+++-+..
T Consensus 151 vr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 151 VRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred cchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 111 124678999999997754
No 478
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=28.08 E-value=1.2e+02 Score=24.99 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.2
Q ss_pred CcCEEEEccCCCchH-----HHHHhhCCCCcEEEEEec
Q psy14971 62 PYDIIHLGAACIEVP-----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 62 ~fD~I~i~~~~~~i~-----~~l~~~L~pGGrLv~~~~ 94 (156)
.||.+++-.+.+.-. ..+.++|.|||.+++.-.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 799999988876432 356789999999999754
No 479
>PRK09291 short chain dehydrogenase; Provisional
Probab=27.85 E-value=2e+02 Score=21.65 Aligned_cols=59 Identities=10% Similarity=-0.078 Sum_probs=38.9
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCC
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAAC 72 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~ 72 (156)
.+...+.+|+++.++++-.+..++.... .+ .+ +.++.+|..+... .....|.++.+++.
T Consensus 21 ~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~ 83 (257)
T PRK09291 21 RLARKGHNVIAGVQIAPQVTALRAEAAR-RG-LA---LRVEKLDLTDAIDRAQAAEWDVDVLLNNAGI 83 (257)
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---ceEEEeeCCCHHHHHHHhcCCCCEEEECCCc
Confidence 3444567999999988766655555544 23 24 8888899765211 12378999998764
No 480
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=27.27 E-value=1.1e+02 Score=21.38 Aligned_cols=56 Identities=2% Similarity=-0.071 Sum_probs=35.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCch
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~i 75 (156)
...|.-+|-++......+..+.. .+. + +.. ..++.+. ......||.|+++...+..
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~-~~~-~---v~~-~~~~~~~~~~~~~~~~d~ii~d~~~~~~ 60 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDS-AGF-E---VRL-FESAQAFLDALPGLRFGCVVTDVRMPGI 60 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCC-e---EEE-eCCHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 46889999999998888888776 353 2 321 2222111 1223569999999876543
No 481
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=27.26 E-value=2e+02 Score=24.46 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=19.5
Q ss_pred chHHH-HHH-hcCCCCEEEEEeCCHHHHHHH
Q psy14971 2 GDLNV-IVG-IKGERALVLILNHYMKVKSKN 30 (156)
Q Consensus 2 G~la~-la~-l~g~~g~V~avD~~~~~~~~A 30 (156)
|++.. ||. +...+-.|+++|++++.++..
T Consensus 12 G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 12 GYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred chhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 55543 333 333457899999999988863
No 482
>PRK08251 short chain dehydrogenase; Provisional
Probab=26.94 E-value=2.7e+02 Score=20.80 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=39.3
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++.....+.....-.+ +.++.+|..+.. ...++.|.++.+++.
T Consensus 22 l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 22 FAAKGRDLALCARRTDRLEELKAELLARYPGIK---VAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCce---EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 333446899999999888776666554111124 888889986531 112468999998864
No 483
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=26.79 E-value=83 Score=24.62 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=43.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---C---CCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---G---HAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~---~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..| .+|++++.+++..+.+++ +|.+. ++...... . ......+|.++-..+-.. ....+
T Consensus 162 la~~~g--~~v~~~~~~~~~~~~~~~-----~g~~~-----~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~ 228 (324)
T cd08244 162 LAKAAG--ATVVGAAGGPAKTALVRA-----LGADV-----AVDYTRPDWPDQVREALGGGGVTVVLDGVGGAI-GRAAL 228 (324)
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHH-----cCCCE-----EEecCCccHHHHHHHHcCCCCceEEEECCChHh-HHHHH
Confidence 344554 578999888887766532 24321 11111100 0 112245899987655443 35678
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+.|+++|+++..-.
T Consensus 229 ~~l~~~g~~v~~g~ 242 (324)
T cd08244 229 ALLAPGGRFLTYGW 242 (324)
T ss_pred HHhccCcEEEEEec
Confidence 89999999997643
No 484
>PRK07062 short chain dehydrogenase; Provisional
Probab=26.60 E-value=2.9e+02 Score=20.99 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=39.7
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++-++.+.+.+....+-.+ +.++..|..+.. ...++.|.++.+++.
T Consensus 28 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 28 LLEAGASVAICGRDEERLASAEARLREKFPGAR---LLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCce---EEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 344567999999999887777666654111124 777888876521 112568999998865
No 485
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=26.30 E-value=92 Score=23.09 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=26.1
Q ss_pred CCcCEEEEccCCCc------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 61 GPYDIIHLGAACIE------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 61 ~~fD~I~i~~~~~~------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.||+|+++-+.-. ....+.-+++++++++...+..
T Consensus 85 ~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 85 GKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 68999999988621 1234455678999999988753
No 486
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=26.18 E-value=2.9e+02 Score=20.95 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.++-..+.. .....++.|+++|+++..-
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 4589888654443 4456678999999998753
No 487
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=26.04 E-value=88 Score=23.15 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=33.6
Q ss_pred eCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCC-------CCCCcCEEEEccCC
Q psy14971 21 NHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHA-------EEGPYDIIHLGAAC 72 (156)
Q Consensus 21 D~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~-------~~~~fD~I~i~~~~ 72 (156)
|+...|++-|++.+++ +|. +| +.++.-.+.-..| ..+.||+|+.-+.+
T Consensus 25 ~I~d~ll~gA~~~l~~-~G~~~~~---i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~V 81 (152)
T COG0054 25 DITDALLEGAVDALKR-HGADVDN---IDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAV 81 (152)
T ss_pred HHHHHHHHHHHHHHHH-cCCCccc---ceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeE
Confidence 5677889999999998 474 45 7777766542222 24679999987754
No 488
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=25.95 E-value=2.9e+02 Score=20.78 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---HHHHhhCCCCcEEEEEe
Q psy14971 33 NKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 33 ~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~~l~~~L~pGGrLv~~~ 93 (156)
.+.+ .|+ + +.|+.-|. +...|.+|++-+...--+ +.+.+..+.||.|++..
T Consensus 38 al~~-~gi-~---vDvv~~~~-----dL~~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~~ 91 (207)
T PF08532_consen 38 ALRE-LGI-P---VDVVSPDD-----DLSGYKLLVLPSLYILSPEFAERLRAYVENGGTLILTP 91 (207)
T ss_dssp HHHT-TT------EEEE-TTS-------TT-SEEEES--SC--HHH---HHHHHT-SS-EEE-T
T ss_pred HHHH-cCC-c---eEEecCcC-----CcccCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEEc
Confidence 3444 365 4 78888663 234599999877653333 34778889999999853
No 489
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=25.66 E-value=2.3e+02 Score=22.95 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=55.2
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCc---h---
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIE---V--- 75 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~---i--- 75 (156)
++++++.+.-++...|.+|+=...-++|+.. + .+ +++..+|+...+ |....=-.|+++-+.+. +
T Consensus 102 lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~--d-~~---vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rv 175 (279)
T COG2961 102 LARQLLREQDRLVLTELHPSDAPLLRNNFAG--D-RR---VRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRV 175 (279)
T ss_pred HHHHHcchhceeeeeecCccHHHHHHHHhCC--C-cc---eEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHH
Confidence 5566777788999999999999999999975 2 46 999999996543 32233467888887652 2
Q ss_pred HHHHHhhCC--CCcEEEE
Q psy14971 76 PKEILAQLK--PGGRLVF 91 (156)
Q Consensus 76 ~~~l~~~L~--pGGrLv~ 91 (156)
-+.+.+.++ ++|...+
T Consensus 176 v~~l~~~~kRf~~g~yai 193 (279)
T COG2961 176 VEALAEAYKRFATGTYAI 193 (279)
T ss_pred HHHHHHHHHhhcCceEEE
Confidence 223333333 5666555
No 490
>PRK05855 short chain dehydrogenase; Validated
Probab=25.55 E-value=2.9e+02 Score=23.58 Aligned_cols=58 Identities=19% Similarity=0.074 Sum_probs=41.5
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+.++. .|. + +.++.+|..+... ..++.|.++.+++.
T Consensus 335 l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~-~---~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 335 FAREGAEVVASDIDEAAAERTAELIRA-AGA-V---AHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cCC-e---EEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 444567899999998887777666665 353 5 8888999865311 12568999999876
No 491
>PRK09242 tropinone reductase; Provisional
Probab=25.50 E-value=3e+02 Score=20.79 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=40.2
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.++++++.++...+++.....-.+ +.++.+|..+.. ...++.|.++..++.
T Consensus 29 l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~---~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 29 FLGLGADVLIVARDADALAQARDELAEEFPERE---VHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCe---EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344457899999998888777777654111124 788888976421 113578999998865
No 492
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=25.48 E-value=3.2e+02 Score=21.06 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=42.3
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCc
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGG 87 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGG 87 (156)
|...| .+|+.++.+++..+.+++ +|.+. +.....+ ... ..+|.++-..+.. .....++.|+++|
T Consensus 153 a~~~g--~~v~~~~~~~~~~~~~~~-----~g~~~---~~~~~~~----~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~G 216 (305)
T cd08270 153 AALAG--AHVVAVVGSPARAEGLRE-----LGAAE---VVVGGSE----LSG-APVDLVVDSVGGP-QLARALELLAPGG 216 (305)
T ss_pred HHHcC--CEEEEEeCCHHHHHHHHH-----cCCcE---EEecccc----ccC-CCceEEEECCCcH-HHHHHHHHhcCCC
Confidence 44444 578888888877766653 24322 2111111 111 3589988655543 3456788999999
Q ss_pred EEEEEe
Q psy14971 88 RLVFHK 93 (156)
Q Consensus 88 rLv~~~ 93 (156)
+++..-
T Consensus 217 ~~v~~g 222 (305)
T cd08270 217 TVVSVG 222 (305)
T ss_pred EEEEEe
Confidence 999864
No 493
>PRK06197 short chain dehydrogenase; Provisional
Probab=25.37 E-value=3.4e+02 Score=21.34 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=39.4
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+.+|+.+.++++..+.+.+.+....+-.+ +.++.+|..+.. ...+..|.++.+++.
T Consensus 36 l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~---~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 36 LAAKGAHVVLAVRNLDKGKAAAARITAATPGAD---VTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc---eEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 334456899999998887777666654111234 788888986521 012468999998864
No 494
>PRK06181 short chain dehydrogenase; Provisional
Probab=25.31 E-value=3e+02 Score=20.79 Aligned_cols=58 Identities=16% Similarity=0.026 Sum_probs=39.2
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-.+...+.+.. .+ .+ +.++.+|..+... ..++.|.++.+++.
T Consensus 21 l~~~g~~Vi~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 21 LARAGAQLVLAARNETRLASLAQELAD-HG-GE---ALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 344457999999998777666666655 24 34 8888889765211 12468999988754
No 495
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.30 E-value=2e+02 Score=23.45 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--C-CcCEEEEccCCCch
Q psy14971 4 LNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--G-PYDIIHLGAACIEV 75 (156)
Q Consensus 4 la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~-~fD~I~i~~~~~~i 75 (156)
+.+=.+..| -..|.++|+++..++.=+.|... -.++.+|..+..... . .+|.++-+.+|...
T Consensus 16 ~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 16 LSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred HHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 333334444 46899999999988887777652 124445554422221 1 68999999888643
No 496
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=25.24 E-value=2.1e+02 Score=23.23 Aligned_cols=70 Identities=14% Similarity=-0.035 Sum_probs=38.8
Q ss_pred CchHH--HHHHhcCCCCEEEEEeCCHHHHHHHHHHH-hhh--cCCCCccceEEEEccCCCCC--CC-CCCcCEEEEccCC
Q psy14971 1 MGDLN--VIVGIKGERALVLILNHYMKVKSKNQNNK-KLN--IKQNRKSFKNVSVKDGSKGH--AE-EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la--~la~l~g~~g~V~avD~~~~~~~~A~~~l-~~~--~g~~n~~~v~~~~gD~~~~~--~~-~~~fD~I~i~~~~ 72 (156)
+||+. +...++..+-+|+++|+...-.......+ ... ....+ ++++.+|..+.. .. ...+|.||-.++.
T Consensus 24 tGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Di~d~~~l~~~~~~~d~ViHlAa~ 100 (348)
T PRK15181 24 AGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSR---FIFIQGDIRKFTDCQKACKNVDYVLHQAAL 100 (348)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCc---eEEEEccCCCHHHHHHHhhCCCEEEECccc
Confidence 47777 34455555568999998654222111111 110 01234 889999987521 10 1348998888875
Q ss_pred C
Q psy14971 73 I 73 (156)
Q Consensus 73 ~ 73 (156)
.
T Consensus 101 ~ 101 (348)
T PRK15181 101 G 101 (348)
T ss_pred c
Confidence 4
No 497
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.15 E-value=2.4e+02 Score=20.97 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=37.9
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-.+.....+.. + .+ +.++.+|..+.. ...+++|.|+.+++.
T Consensus 25 l~~~G~~V~~~~r~~~~~~~~~~~~~~--~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 25 FAAEGARVVVTDRNEEAAERVAAEILA--G-GR---AIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHhc--C-Ce---EEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 444456899999999776665555542 1 24 788888876421 112468999998865
No 498
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=25.11 E-value=1.4e+02 Score=23.86 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=23.6
Q ss_pred CcCEEEEccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 62 PYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 62 ~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
.+|.++-..+.....+..++.|+++|+++..
T Consensus 243 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 243 GVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 5899986555444556778899999999864
No 499
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.87 E-value=3.2e+02 Score=20.86 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=39.0
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~ 72 (156)
++..+.+|+.++++++-++...+.++. .+ .. +.++..|...... ..+++|.++..++.
T Consensus 30 l~~~G~~Vi~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 30 FAEAGADVLIAARTESQLDEVAEQIRA-AG-RR---AHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-Cc---EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 444567999999998877666666654 23 34 7888888764211 01468999988763
No 500
>KOG4609|consensus
Probab=24.56 E-value=1.7e+02 Score=23.38 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=37.7
Q ss_pred CCcCEEEEccCCCchHHHHHh--hCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecC
Q psy14971 61 GPYDIIHLGAACIEVPKEILA--QLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLG 128 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~--~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~ 128 (156)
.+|..|++.+.+-.+. +++ |+-|.|.+=+.+.. ..+.-++-...|.++.+.+.+..|+|-.
T Consensus 217 dSy~liV~HaNVIRY~--icRALq~PpegWlR~nlnh-----~SiTWlti~PsG~vsvr~lGdsGfmP~~ 279 (284)
T KOG4609|consen 217 DSYELIVCHANVIRYF--ICRALQFPPEGWLRMNLNH-----CSITWLTISPSGHVSVRSLGDSGFMPPN 279 (284)
T ss_pred ccEEEEEeecchhhhh--hhhhhcCCcchhheecccC-----cceEEEEEccCCcEEEEeccccCCCChh
Confidence 4566666666554332 122 66788888887754 2233233333577999999999998843
Done!