RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14971
(156 letters)
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 70.7 bits (174), Expect = 8e-16
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
++NV+V+ DGSKG EE PYD I + AA EVP+ +L QLKPGGRLV G Q
Sbjct: 119 YENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP--AQR 176
Query: 103 LAYIDRLPNGTYLRE 117
L I + +G + R
Sbjct: 177 LLRITKDGDGNFERR 191
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 62.9 bits (154), Expect = 8e-13
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 31 QNNKKLNIKQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGR 88
+ K+L + NVSV+ DG KG P+D I + AA E+P+ +L QLK GG
Sbjct: 118 RRLKQLGLH-------NVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGI 170
Query: 89 LV 90
LV
Sbjct: 171 LV 172
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 61.2 bits (149), Expect = 4e-12
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 35 KLNIKQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92
+ N++ + +NV V DG +G E PYD IH+GAA E+P+ ++ QLK GGRLV
Sbjct: 115 RRNLE--KLGLENVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIP 172
Query: 93 KGLHNGHYQSLAYIDRLPNG 112
G NG+ Q L D+ +G
Sbjct: 173 VGP-NGN-QVLQQFDKRNDG 190
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 52.3 bits (126), Expect = 7e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 45 FKNVSV--KDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+ NV V DG+ G+ E PYD I++ AA ++PK ++ QLK GG +V G ++ Q
Sbjct: 126 YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYS---QE 182
Query: 103 LAYIDRLPNGTYLREKSGYPIDKPLGG 129
L +++ NG +++K G PL G
Sbjct: 183 LIRVEKD-NGKIIKKKLGEVAFVPLIG 208
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 49.8 bits (119), Expect = 4e-08
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 47 NVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
NV V DG++G PYD I++ AA ++P+ ++ QLK GG LV
Sbjct: 129 NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILV 174
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 47 NVSV--KDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
V+V D G E PYD I + ++P L QL PGGRLV
Sbjct: 133 QVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLV 178
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 43.1 bits (102), Expect = 1e-05
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 48 VSVKDGSKGHAEEGPYD-IIHLGAAC--IEVPKEILAQLKPGGRLV 90
V DG GH PYD II A C VP L Q +PGG ++
Sbjct: 160 VVTGDGLLGHPPRAPYDRII---ATCAVRRVPPAWLRQTRPGGVIL 202
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 42.5 bits (100), Expect = 2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 6 VIVGIKGERALVLILNHYMKV-KSKNQNNKKLNIKQNRKSFKNVSV--KDGSKGHAEEGP 62
V+ + GE+ LV+ + + K+ + +N ++L I+ NV DG G E P
Sbjct: 97 VMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-------NVIFVCGDGYYGVPEFAP 149
Query: 63 YDIIHLGAACIEVPKEILAQLKPGGRLV 90
YD+I + EVP+ QLK GGR++
Sbjct: 150 YDVIFVTVGVDEVPETWFTQLKEGGRVI 177
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 38.3 bits (89), Expect = 6e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDR 108
DG +G + P+D I + AA +P ++ QLK GG LV + G Q L + +
Sbjct: 132 DGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVI--PVEEGVGQVLYKVVK 186
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 33.4 bits (77), Expect = 0.021
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 38 IKQNRKSF--KNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPKEILAQLKPGGR 88
I++N F N+ V +G A E D+ A I E+ + +LKPGGR
Sbjct: 74 IERNAARFGVDNLEVVEGD---APEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGR 130
Query: 89 LV 90
LV
Sbjct: 131 LV 132
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 31.9 bits (73), Expect = 0.037
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 39 KQNRKSFKNVSVKDGS--KGHAEEGPYDIIHLGAACIEVP---KEILAQLKPGGRLVFH 92
++ G +D + +G ++ + + LKPGGRLV +
Sbjct: 44 NAKLALGPRITFVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVLN 102
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 32.3 bits (74), Expect = 0.053
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 19/66 (28%)
Query: 38 IKQNRKSF--KNVSVKDGSKGHAEEGPYDIIHLGAA----CIEV--P-KEILAQ----LK 84
I++N F KNV V +GS P + L A CIE P KEIL LK
Sbjct: 80 IRRNCDRFGVKNVEVIEGS------APECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLK 133
Query: 85 PGGRLV 90
PGGRLV
Sbjct: 134 PGGRLV 139
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 32.4 bits (74), Expect = 0.074
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 17 VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76
++IL+ +K K N N ++ N N + N + K+ KG+ + I LG +E
Sbjct: 204 LIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGP--LEYD 261
Query: 77 KEILAQLK 84
KE L ++K
Sbjct: 262 KEKLEKIK 269
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 30.4 bits (69), Expect = 0.28
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 38 IKQNRKSF--KNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI---LAQLKPGGRLV 90
IK+NR+ F N+ + G G D I +G + + I LA L PGGRLV
Sbjct: 71 IKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLV 128
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 29.3 bits (66), Expect = 0.34
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 34 KKLNIKQNRKSFKNVSVK--DGSKGH-AEEGPYDIIHLGAACIEVP-------KEILAQL 83
+ NV V D + + +D+I + +E L
Sbjct: 35 ELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLL 94
Query: 84 KPGGRLVFH 92
KPGG LV
Sbjct: 95 KPGGVLVLT 103
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 29.2 bits (66), Expect = 0.86
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 35 KLNIKQNR-KSFKNVSVKDGSKGHAEEGPYDIIHLGAACI------EVPKEILAQLKPGG 87
+ N + N + + E GP+D+I A I E+ +I LKPGG
Sbjct: 202 RENARLNGVELLVQAKGFLLLEV-PENGPFDVI---VANILAEVLVELAPDIKRLLKPGG 257
Query: 88 RLVF 91
RL+
Sbjct: 258 RLIL 261
>gnl|CDD|220951 pfam11031, Phage_holin_T, Bacteriophage T holin. Bacteriophage
effects host lysis with T holin along with an endolysin.
T disrupts the membrane allowing sequential events which
lead to the attack of the peptidoglycan. T has an usual
periplasmic domain which transduces environmental
information for the real-time control of lysis timing.
Length = 216
Score = 27.8 bits (62), Expect = 2.0
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 103 LAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQGK 147
+AY +LP+ + GYP++K +EY+V L G+
Sbjct: 113 IAYEGKLPSTLDEKSLGGYPVNK----------TSEEYRVHLSGR 147
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 26.9 bits (60), Expect = 2.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 59 EEGPYDII-----HLGAACIEVPKEILAQLKPGGRLVFH 92
+G D++ H A + + L L PGG +VFH
Sbjct: 65 PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFH 103
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 27.1 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 14/44 (31%)
Query: 58 AEEGPYDIIHLGAACIEV------PKEILAQ----LKPGGRLVF 91
G YD+I EV P +L Q LKPGG L+
Sbjct: 70 VLAGKYDLIT----AFEVLEHLPDPPALLQQLRELLKPGGVLLI 109
>gnl|CDD|220072 pfam08922, DUF1905, Domain of unknown function (DUF1905). This
domain is found in a set of hypothetical bacterial
proteins.
Length = 78
Score = 26.0 bits (58), Expect = 3.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 69 GAACIEVPKEILAQLKPGGR 88
G A + +P ++ +L GGR
Sbjct: 11 GWAFVTIPFDVSEELGKGGR 30
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 26.5 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 59 EEGPYDIIHLGA-ACIEVPKEILAQL-KPGGRLVFHKG 94
E +DII A A + V E+ L K GG + +KG
Sbjct: 106 HEEQFDIITSRALASLNVLLELTLNLLKVGGYFLAYKG 143
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 25.7 bits (57), Expect = 5.9
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 59 EEGPYDIIHLGAACIEVP------KEILAQLKPGGRLVF 91
+ +D++ +P +EI LKPGG+LV
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 26.2 bits (58), Expect = 6.3
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 26 VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDII------HLGAACIEVPKEI 79
++ +N KKL + F +++ + E+ +D++ + +V +EI
Sbjct: 41 IEKAKENAKKLGYE--NVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEI 98
Query: 80 LAQLKPGGRLVFH 92
+ LKPGG L+
Sbjct: 99 IRVLKPGGVLIVS 111
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 25.9 bits (58), Expect = 8.6
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 57 HAEEGP--YDIIHLGAACIEV------PKEILAQ----LKPGGRLVF 91
A E P +D++ C+E+ P + +KPGG + F
Sbjct: 107 LAAEHPGQFDVV----TCMEMLEHVPDPASFVRACAKLVKPGGLVFF 149
>gnl|CDD|215203 PLN02355, PLN02355, probable galactinol--sucrose
galactosyltransferase 1.
Length = 758
Score = 26.4 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 28 SKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGP 62
S N N+ +IK+N K F+ K+G +GH + P
Sbjct: 262 SANFANRLTHIKENHK-FQ----KNGKEGHRVDDP 291
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 26.1 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 57 HAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92
A E P G + V E LA+L+PG L F
Sbjct: 243 TASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFT 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.139 0.402
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,948,417
Number of extensions: 719296
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 35
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)