RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14971
(156 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 82.2 bits (204), Expect = 3e-20
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 35 KLNIKQNRKS---FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRL 89
N++++ + V + DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL
Sbjct: 119 VNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRL 178
Query: 90 VFHKGLHNGHYQSLAYIDRLPNGTYLREK 118
+ G G+ Q L D+L +G+ +
Sbjct: 179 ILPVGPAGGN-QMLEQYDKLQDGSIKMKP 206
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 81.5 bits (202), Expect = 6e-20
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 44 SFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQ 101
+ + DG KG+ PY+ IH+GAA + P E++ QL GGRL+ G G Q
Sbjct: 143 DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS-Q 201
Query: 102 SLAYIDRLPNGTYLREK 118
+ D+ NG +
Sbjct: 202 YMQQYDKDANGKVEMTR 218
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 79.2 bits (196), Expect = 4e-19
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 39 KQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96
+ + N+ + DG+ G+ EE PYD + + A + + QLK GG ++ G
Sbjct: 109 SKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG-- 166
Query: 97 NGHYQSLAYIDRLPNG 112
G Q L + + N
Sbjct: 167 VGRVQKLYKVIKKGNS 182
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 77.3 bits (191), Expect = 3e-18
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
KNV V DGSKG + PYD+I + A ++P+ ++ QLK GG+L+ G ++ +Q
Sbjct: 139 VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL-WQE 197
Query: 103 LAYIDRLPNG 112
L + + +G
Sbjct: 198 LLEVRKTKDG 207
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 75.7 bits (187), Expect = 9e-18
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+ NV V DG+ G+ PYD I+ AA ++P+ ++ QLK GG+L+ G + Q
Sbjct: 127 YDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG---RYLQR 183
Query: 103 LAYIDRLPNG 112
L ++ +
Sbjct: 184 LVLAEKRGDE 193
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 76.7 bits (189), Expect = 1e-17
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+NV DG G E PYD+I + EVP+ QLK GGR++ L +
Sbjct: 125 IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK-LSRRQ 183
Query: 103 LAYIDRLPNGTYLREKSG 120
A++ + + +
Sbjct: 184 PAFLFKKKDPYLVGNYKL 201
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 71.5 bits (176), Expect = 3e-16
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
NVS + DG +G P+D I + AA E+P ++ QL GG LV G +Q
Sbjct: 124 LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG---EEHQY 180
Query: 103 LAYIDRLPNG 112
L + R
Sbjct: 181 LKRVRRRGGE 190
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 71.5 bits (176), Expect = 4e-16
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 35 KLNIKQNRKS---FKNVSVK------DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85
NIK+++ N + + E G +D IH+GA+ E+P+ ++ L
Sbjct: 126 LENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAE 185
Query: 86 GGRLVFHKGLHNGHYQSLAYIDRLPNG 112
G+L+ + Q L I +
Sbjct: 186 NGKLIIPIE--EDYTQVLYEITKKNGK 210
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 34.9 bits (80), Expect = 0.004
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 26/117 (22%)
Query: 37 NIKQNRKSF--KNVSVKDGSKGHAEEG--PYDIIHLGAACI---EVPKEILAQLKPGGRL 89
I+ N K F +NV++ + + D + +G + E+ + +LK G +
Sbjct: 79 FIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVI 138
Query: 90 VFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPID---------KPLGGLISLKEQM 137
V + +D L E GY ++ K L +
Sbjct: 139 VLN----------AVTLDTLTKAVEFLEDHGYMVEVACVNVAKTKGLTEYKMFESHN 185
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 35.0 bits (80), Expect = 0.005
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 58 AEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVF 91
P+ +I V + P ++
Sbjct: 107 GLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLY 140
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 20/98 (20%)
Query: 39 KQNRKSFKNVSVKDGS-KGHAEEGPYDII-------HLG--AACIEVPKEILAQLKPGGR 88
Q K + ++S + +D+I +L ++ L PGG
Sbjct: 90 CQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGH 149
Query: 89 LVFHKGLHNGHYQSLA-------YIDR-LPNGTYLREK 118
LVF G + L E+
Sbjct: 150 LVF--GSARDATCRRWGHVAGAETVITILTEALTEVER 185
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 34.4 bits (79), Expect = 0.008
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 37 NIKQNRKSFK---NVSVKDGSKGHAEEG--PYD-IIHLGAACIEVPKEILAQLKPGGRLV 90
NI++N ++ + G+ A + + G + + L PG R+V
Sbjct: 92 NIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV 151
Query: 91 FH 92
+
Sbjct: 152 AN 153
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 33.6 bits (77), Expect = 0.011
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 37 NIKQNRKSF--KNVSVKDGSKGHAEEGPYD-----IIHLGAACIEVPKEILAQLKPGGRL 89
I N + + A + D I G V +L GGRL
Sbjct: 64 RILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRL 123
Query: 90 VFH 92
V +
Sbjct: 124 VAN 126
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.021
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 37 NIKQNRKSFK---NVSVKDGSKGHAEEG--PYDII---HLGAACIEVPKEILAQLKPGGR 88
+ N + NV++ +G A DI G E+ + I +LKPGGR
Sbjct: 70 TTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGR 129
Query: 89 LVFH 92
++
Sbjct: 130 IIVT 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 33.2 bits (75), Expect = 0.024
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 45 FKNVSVKDGSKGHAEEGPYDIIHLGAAC---IEVPKEILAQLKPGGRLVF 91
V+V G + + +D++ + A V + I + R+++
Sbjct: 171 VDGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 33.2 bits (76), Expect = 0.026
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 60 EGPYDIIHLGAACIEVP------KEILAQLKPGGRLVF 91
+ P D + A V I LK GGR V
Sbjct: 115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.039
Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 19 ILNHYMKVKSKNQNNKKLNIK--QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76
I + Y+++K K +N L+ + K D + ++ Y H+G
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHH----- 480
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQ 136
L ++ R+ + + + ++++ +R + G +++ +Q
Sbjct: 481 ---LKNIEHPERMTLFRMV----FLDFRFLEQ-----KIR-HDSTAWNAS-GSILNTLQQ 526
Query: 137 MDEYKVQLQGKYTKYHQI 154
+ YK + KY ++
Sbjct: 527 LKFYKPYICDNDPKYERL 544
Score = 27.9 bits (61), Expect = 1.9
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 77 KEILAQLKPGGRLVFH--KG-----LHNGHYQSLAYIDRLPNGTY 114
++ L +L+P ++ G + S ++ +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 32.1 bits (73), Expect = 0.041
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 59 EEGPYDIIHLGAACIEVP--------KEILAQLKPGGRLVFHKGLHNGH 99
YD + A + VP K I LKPGG +G
Sbjct: 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA--SYKSGE 145
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 31.4 bits (71), Expect = 0.070
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 16/79 (20%)
Query: 60 EGPYDIIHLGAACIEVP--------KEILAQLKPGGRLVF-----HKGLHNGHYQSLA-- 104
+ +D + VP + + + + PGG + F H+ S
Sbjct: 105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEV 164
Query: 105 -YIDRLPNGTYLREKSGYP 122
L +G R +
Sbjct: 165 AVRRTLQDGRSFRIVKVFR 183
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 30.5 bits (69), Expect = 0.14
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 10/49 (20%)
Query: 59 EEGPYDIIHLGAACIEVP--------KEILAQLKPGGRLVFHKGLHNGH 99
+ + + I + + ++ GG L+ +G
Sbjct: 99 SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM--SFFSGP 145
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 30.6 bits (69), Expect = 0.20
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHY----QSLAYIDR--LPNGTYLRE 117
E LK GGR V G N Y + ++ I+ N RE
Sbjct: 205 SEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRRE 251
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.1 bits (68), Expect = 0.20
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 37 NIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV------PKEILAQ----LK 84
+Q ++ +V + D EE +D + +V P ++ + +K
Sbjct: 66 AAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVI----FGDVLEHLFDPWAVIEKVKPYIK 121
Query: 85 PGGRLVF 91
G ++
Sbjct: 122 QNGVILA 128
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 29.8 bits (67), Expect = 0.25
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 47 NVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGRLVFH 92
+ + ++ I + ++ LKPGG +
Sbjct: 79 TTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILE 130
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 29.8 bits (67), Expect = 0.26
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 16/60 (26%)
Query: 58 AEEGPYDIIHLGAACIEV-----PKEILAQ----LKPGGRLVF---HKGLHNGHYQSLAY 105
YD+I E+L+ L PGG LV H +
Sbjct: 112 PVGKDYDLI----CANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGW 167
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 29.4 bits (66), Expect = 0.34
Identities = 7/23 (30%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGH 99
I L GR V G G
Sbjct: 131 ANIHRALGADGRAVI--GFGAGR 151
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.1 bits (66), Expect = 0.43
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 37 NIKQNRKSF--KNVSVKDGSKGHAEEG----PYDIIHLGAACIEVPKEIL--AQLKPGGR 88
KQN F KN + G AE+ ++ +G + ++I+ K
Sbjct: 72 VTKQNLAKFNIKNCQIIKGR---AEDVLDKLEFNKAFIG--GTKNIEKIIEILDKKKINH 126
Query: 89 LV 90
+V
Sbjct: 127 IV 128
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 29.2 bits (65), Expect = 0.43
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACI-EVPKEILAQLKPGGRLVF 91
D EG + + +++ L G + F
Sbjct: 146 NVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGF 188
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.4 bits (66), Expect = 0.45
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 59 EEGPYDIIH-LGAAC-----IEVPKEILAQLKPGGRLVFH 92
E+ +D + L + +E+ L+PGG +
Sbjct: 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 28.9 bits (64), Expect = 0.58
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 42 RKSFKNVSVKDGSK----GHAEEGPYDII----HLGAACIEVP------KEILAQLKPGG 87
R + K V D A D + + AC + + + LKPGG
Sbjct: 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG 191
Query: 88 RLVFHKGLHNGHY 100
LV L Y
Sbjct: 192 HLVTTVTLRLPSY 204
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.8 bits (64), Expect = 0.65
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQ 136
K I + ++PGG LV N Y L G K+ Y + +
Sbjct: 159 KNIASMVRPGGLLVID--HRNYDY-------ILSTGCAPPGKNIYYKSDLTKDITTSVLT 209
Query: 137 MDEYKVQLQGKYT 149
++ + YT
Sbjct: 210 VNNKAHMVTLDYT 222
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase,
alternative splicing; HET: UD1; 1.90A {Homo sapiens}
SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 29.0 bits (64), Expect = 0.66
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 74 EVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNG 112
E+ + GRL+F+ G H+ ++ ++ + N
Sbjct: 306 EISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV 344
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 28.7 bits (64), Expect = 0.74
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 59 EEGPYDIIHLGAACIEVPKE-ILAQ----LKPGGRLVFH 92
+ D+I A + E + + LK GG +
Sbjct: 111 QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVS 149
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 28.3 bits (64), Expect = 0.76
Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 35 KLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIH---LGAACIEVPKEILAQLKPGGRLVF 91
+ N N +++++ S +G +D+I L +++ ++ + L G+++F
Sbjct: 100 EENAALNG--IYDIALQKTSLLADVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIF 157
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 28.5 bits (63), Expect = 0.86
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 42 RKSFKNVSVKDGSK----GHAEEGPYDII----HLGAACIEVP------KEILAQLKPGG 87
R++ K V D ++ G P D + L AAC ++P + + + LKPGG
Sbjct: 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGG 192
Query: 88 RLVFHKGLHNGHY 100
LV L + +Y
Sbjct: 193 FLVMVDALKSSYY 205
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 28.2 bits (62), Expect = 0.99
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 16/78 (20%)
Query: 39 KQNRKSFKNVSVKDGSK------GHAEEGPYDII----HLGAACIEVP------KEILAQ 82
+Q R K V D + G P D + L A ++ I
Sbjct: 145 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTL 204
Query: 83 LKPGGRLVFHKGLHNGHY 100
L+PGG L+ L Y
Sbjct: 205 LRPGGHLLLIGALEESWY 222
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 28.2 bits (63), Expect = 1.1
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 56 GHAEEGPYDII-------HLG--AACIEVPKEILAQLKPGGRLVFH 92
G+ D+ G A E + LKPGG ++
Sbjct: 97 GYVANEKCDVAACVGATWIAGGFAGAEE---LLAQSLKPGGIMLIG 139
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 27.5 bits (61), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 77 KEILAQLKPGGRLVF 91
+ L GG++VF
Sbjct: 129 AKYSQLLNKGGKIVF 143
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 27.6 bits (61), Expect = 1.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHY 100
K + LKPGG + +G H Y
Sbjct: 126 KSLKKVLKPGGTITVIEGDHGSCY 149
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 27.2 bits (60), Expect = 2.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDR 108
+ L+PGG+ + L ++R
Sbjct: 174 ASVREHLEPGGKFLLS--LAMSEAAESEPLER 203
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 27.2 bits (60), Expect = 2.3
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 59 EEGPYDIIHLGAACIEVPKE-ILAQ----LKPGGRLVFH 92
D+I A + E L + LK GG L
Sbjct: 111 RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVS 149
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 26.7 bits (58), Expect = 2.7
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 25 KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPK 77
K+++ N ++++ +N K + K+ S +DII G E+
Sbjct: 35 KLQALTGNEGRVSV-ENIKQLLQSAHKESS--------FDIILSGLVPGSTTLHSAEILA 85
Query: 78 EILAQLKPGGRLVFHKGLH 96
EI L+PGG L + +
Sbjct: 86 EIARILRPGGCLFLKEPVE 104
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 9/63 (14%)
Query: 39 KQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP--------KEILAQLKPGGRL 89
K + V + + E YD++ + + K + LK G
Sbjct: 85 KNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIF 144
Query: 90 VFH 92
+
Sbjct: 145 INA 147
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 26.9 bits (59), Expect = 2.9
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 35 KLNIKQNRKSFKNVSVKDGS--------KGHAEEGPYDIIHLGAACI-----EVPKEILA 81
++ + + ++KNVS K S ++ D+I + + A
Sbjct: 78 EVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYA 137
Query: 82 QLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKP 126
L+ G + + D + Y ++ G ++P
Sbjct: 138 NLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQP 182
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 26.7 bits (59), Expect = 2.9
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 60 EGPYDII-------HLGAACIE-VPKEILAQLKPGGRLVFHKGLHNGHY 100
+ YD I L A I + + KPGG + + Y
Sbjct: 95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY 143
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 26.7 bits (59), Expect = 3.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 77 KEILAQLKPGGRLVFH 92
++ LKP G L+
Sbjct: 143 QKCYKWLKPTGTLLIT 158
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 26.6 bits (58), Expect = 3.9
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 59 EEGPYDIIHLGAACIEVP------KEILAQLKPGGRLVFH 92
+ DI+ C KEI L+ GG L F
Sbjct: 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS 202
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 26.6 bits (60), Expect = 3.9
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 77 KEILAQ----LKPGGRLV---FH 92
KE L Q L PGGRLV FH
Sbjct: 213 KEFLEQAAEVLAPGGRLVVIAFH 235
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 26.3 bits (58), Expect = 4.2
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHY 100
++ LKPGG + Y
Sbjct: 129 SKVAEALKPGGVFITD--FPCWFY 150
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 26.4 bits (59), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 70 AACIEVPKEILAQ----LKPGGRLV 90
C + +L + LKPGG LV
Sbjct: 219 KFCQGLQMRLLEKGLEVLKPGGILV 243
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 26.3 bits (58), Expect = 4.3
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 74 EVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+V +E LKP G + +
Sbjct: 168 KVFQECARVLKPRGVMAITDPMKEDGIDK 196
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 26.3 bits (57), Expect = 4.6
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 53 GSKGHAEEGPYDIIHLGA-ACIEVPKEILAQLKPGGRLVF 91
G+ + +D + L LK GG
Sbjct: 178 GATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAV 217
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 26.2 bits (57), Expect = 5.0
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 20 LNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76
+ Y ++ +K N + + ++++ + E +D IH+ V
Sbjct: 95 IAKYKELVAKTSNLENVKFAWHKETSS--EYQSRMLEKKELQKWDFIHMIQMLYYVKDIP 152
Query: 77 ---KEILAQLKPGGRLVF 91
K + L +++
Sbjct: 153 ATLKFFHSLLGTNAKMLI 170
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR
genomics, joint center for structural genomics, JCSG;
HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Length = 174
Score = 26.1 bits (57), Expect = 5.2
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 57 HAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYL 115
HA+ G ++ + I L GG +V ++ + L G
Sbjct: 111 HADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMYFEGLEELPLPPGAVVGRCF 169
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 26.1 bits (58), Expect = 5.6
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 70 AACIEVPKEILAQ----LKPGGRLV 90
EV K +LAQ L PGG LV
Sbjct: 202 KRMAEVQKALLAQASRLLGPGGVLV 226
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 26.1 bits (58), Expect = 5.8
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 70 AACIEVPKEILAQ----LKPGGRLV 90
C + +EIL+ LK G+L+
Sbjct: 207 LYCQKRQQEILSSAIKMLKNKGQLI 231
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin,
allophanate hydrolase, structural G unknown function,
NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Length = 494
Score = 26.1 bits (58), Expect = 5.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 80 LAQLKPGGRLVFHKG 94
L Q +PG + F G
Sbjct: 480 LGQARPGVEIHFTSG 494
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 3/13 (23%)
Query: 83 LKPGGRLV---FH 92
L PGGRL FH
Sbjct: 264 LAPGGRLSIISFH 276
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 25.9 bits (56), Expect = 6.2
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 50 VKDGSKGHAEEGPYDIIHLG-AACIEVPKEILAQLKPGGRLVF 91
V D + +G D L A EV + L GG L+
Sbjct: 159 VSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMV 201
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 25.8 bits (57), Expect = 6.3
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGY 121
K + LK GG +F +++ + L N + +
Sbjct: 126 KAVSNHLKEGGVFIFD--INSYYK----LSQVLGNNDFNYDDDEV 164
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 26.0 bits (58), Expect = 6.4
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 62 PYDIIHLGAACIEVPKEILAQ----LKPGGRLVF 91
DI L ++ EIL LK GG LV+
Sbjct: 343 DRDIPEL----AQLQSEILDAIWPHLKTGGTLVY 372
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 25.6 bits (56), Expect = 6.5
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLRE 117
KE+ LKP G+ + + L + ++ +
Sbjct: 126 KEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISK 166
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 25.9 bits (57), Expect = 6.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 77 KEILAQLKPGGRLVF 91
L GG+L+F
Sbjct: 121 DSAARLLTDGGKLLF 135
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.0 bits (57), Expect = 6.7
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 77 KEILAQLKPGGRLVF 91
EI L P G L+
Sbjct: 136 SEIRRVLVPDGLLIA 150
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 25.7 bits (57), Expect = 7.1
Identities = 5/24 (20%), Positives = 6/24 (25%), Gaps = 3/24 (12%)
Query: 70 AACIEVPKEIL---AQLKPGGRLV 90
A + L RLV
Sbjct: 208 HALAGFQQRALCHALTFPSLQRLV 231
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 25.6 bits (56), Expect = 7.1
Identities = 5/15 (33%), Positives = 5/15 (33%)
Query: 77 KEILAQLKPGGRLVF 91
EI LK G
Sbjct: 137 NEIKRVLKSDGYACI 151
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 25.4 bits (56), Expect = 7.5
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 34 KKLNIKQNRKSFKNVSVKDGSKGHAEEGPY-----DIIHLGAACIEVP------KEILAQ 82
K N+ KNV V K + P D I + E+ +E+
Sbjct: 76 NYAWEKVNKLGLKNVEVL---KSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRV 132
Query: 83 LKPGGRLV 90
KP L
Sbjct: 133 AKPFAYLA 140
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 25.6 bits (57), Expect = 7.7
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 70 AACIEVPKEILAQ----LKPGGRLV 90
C KE++ LK G LV
Sbjct: 184 KYCSLRQKELIDIGIDLLKKDGELV 208
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 25.8 bits (57), Expect = 8.1
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 70 AACIEVPKEILAQ----LKPGGRLV 90
+E++ L+PGG LV
Sbjct: 219 QEIAATQRELIDSAFHALRPGGTLV 243
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 25.0 bits (55), Expect = 8.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 77 KEILAQLKPGGRLVF 91
E+ LK GR++
Sbjct: 96 SEVKRILKDDGRVII 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.139 0.402
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,389,108
Number of extensions: 137717
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 84
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)