RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14971
(156 letters)
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 52.2 bits (124), Expect = 2e-09
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 31 QNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
N +K + + V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+
Sbjct: 119 NNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 178
Query: 91 FHKGLHNGHYQSLAYIDRLPNGTYLREK 118
G G+ Q L D+L +G+ +
Sbjct: 179 LPVGPAGGN-QMLEQYDKLQDGSIKMKP 205
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 50.2 bits (119), Expect = 8e-09
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 26 VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85
V+ N + + DG KG+ PY+ IH+GAA + P E++ QL
Sbjct: 123 VRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLAS 182
Query: 86 GGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREK 118
GGRL+ G G Q + D+ NG +
Sbjct: 183 GGRLIVPVGPDGGS-QYMQQYDKDANGKVEMTR 214
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 49.2 bits (116), Expect = 2e-08
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 37 NIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96
N+++ DG G E PYD+I + EVP+ QLK GGR++ L
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK 178
Query: 97 NGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGG 129
Q A++ + + + GG
Sbjct: 179 LSRRQ-PAFLFKKKDPYLVGNYKLETRFITAGG 210
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 47.1 bits (111), Expect = 1e-07
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 21 NHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80
+ ++ + K N+++ +V + DGSKG + PYD+I + A ++P+ ++
Sbjct: 104 VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLI 163
Query: 81 AQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNG 112
QLK GG+L+ G ++ Q L + + +G
Sbjct: 164 EQLKIGGKLIIPVGSYHLW-QELLEVRKTKDG 194
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 44.0 bits (103), Expect = 1e-06
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN 111
DG+ G+ EE PYD + + A + + QLK GG ++ G G Q L + + N
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG--VGRVQKLYKVIKKGN 181
Query: 112 GTYLREKSGYPIDKPLGGLISLKEQMDE 139
E G + +GGL + D+
Sbjct: 182 S-PSLENLGEVMFGRIGGLYGFYDDYDD 208
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 31.6 bits (71), Expect = 0.030
Identities = 11/59 (18%), Positives = 18/59 (30%)
Query: 34 KKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92
+ K + V+D S+G E+ + + LK GGR
Sbjct: 145 ESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATV 203
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 28.9 bits (64), Expect = 0.27
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYID 107
++IL K G +++ K L + YQ Y
Sbjct: 317 EKILQTAKVGCKIISLKSLRSLTYQINFYNV 347
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 28.0 bits (61), Expect = 0.39
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 64 DIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPI 123
+ + + LKPGG ++ +++ L + + + S +
Sbjct: 108 GATWIAGGFAGAEELLAQSLKPGGIMLI----GEPYWRQLPATEEIAQACGVSSTSDFL- 162
Query: 124 DKPLGGLISLKEQ 136
L GL+ +
Sbjct: 163 --TLPGLVGAFDD 173
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 28.3 bits (62), Expect = 0.44
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 19 ILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHAEEGPYDIIHLGAAC-- 72
+ K + +K K +++ G + +I +
Sbjct: 183 KADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG 242
Query: 73 ---IEVPKEILAQLKPGGRLVFHKGL 95
KE A +K GGR+V K
Sbjct: 243 PEVDHQLKERFANMKEGGRIVSSKPF 268
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 27.8 bits (61), Expect = 0.53
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 52 DGSKGHAEEGPYDIIHLGAAC-IEVPKEILAQLKPGGRLVF 91
G+ + +D + L LK GG
Sbjct: 170 SGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAV 210
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 27.6 bits (60), Expect = 0.66
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 57 HAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLR 116
+ D I A +E+ +KPGG ++ + L Y
Sbjct: 142 PFSDTSMDAIIRIYA-PCKAEELARVVKPGGWVITATPGPRHLME-------LKGLIYNE 193
Query: 117 EKSGYPIDKPLGGLISLKEQMDEYKVQLQGK 147
P + L G + Y ++L+G
Sbjct: 194 VHLHAPHAEQLEGFTLQQSAELCYPMRLRGD 224
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 27.3 bits (60), Expect = 0.71
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACI-EVPKEILAQLKPGGRLVFH 92
V D + +G D L EV + L GG L+ +
Sbjct: 156 VSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVY 199
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 27.2 bits (59), Expect = 0.98
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQ 136
K I + ++PGG LV N Y L G K+ Y + +
Sbjct: 158 KNIASMVRPGGLLVID--HRNYDY-------ILSTGCAPPGKNIYYKSDLTKDITTSVLT 208
Query: 137 MDEYKVQLQGKYTKYHQ 153
++ + YT
Sbjct: 209 VNNKAHMVTLDYTVQVP 225
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 26.8 bits (58), Expect = 1.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 73 IEVPKEILAQLKPGGRLVFH 92
+ L PGGR +
Sbjct: 198 AALAPRYREALVPGGRALLT 217
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 26.6 bits (57), Expect = 1.2
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 74 EVPKEILAQLKPGGRLVFHKGLHNGHYQSLAY 105
+ LKPGG L + G Y
Sbjct: 144 FIKNHAFRLLKPGGVLTYCNLTSWGELMKSKY 175
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 26.1 bits (56), Expect = 1.7
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 77 KEILAQLKPGGRLVFHKGLHNGHYQ 101
+ KPGG + + +
Sbjct: 118 ANMQRCTKPGGYNLIVAAMDTPDFP 142
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 26.1 bits (56), Expect = 1.7
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 77 KEILAQLKPGGRLV---FHKGLHNGHYQSLAYIDRLPNGTYLREKS 119
+E+ LK GR + + + + +++RL + +++RE S
Sbjct: 103 REVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESS 148
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 194
Score = 25.7 bits (55), Expect = 2.2
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 65 IIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL-PNGTYLREKSGYPI 123
I + +E LK G + G Y+ + N + K GY +
Sbjct: 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRV 188
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.0 bits (56), Expect = 2.4
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 64 DIIHLGAACIEVPKEILAQLKPGGRLVFH 92
+ + ++++ +K GG+++
Sbjct: 102 AFLLHMTTPETMLQKMIHSVKKGGKIICF 130
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 25.8 bits (55), Expect = 2.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 72 CIEVPKEILAQLKPGGRLVF 91
++ ++ LKPGG +
Sbjct: 124 LRKLFSKVAEALKPGGVFIT 143
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 24.2 bits (51), Expect = 9.4
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 59 EEGPYDIIHLGAACIEVP------KEILAQLKPGGRLVFH 92
E +D IH+ V K + L +++
Sbjct: 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.139 0.402
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,006
Number of extensions: 26429
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 26
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.3 bits)