BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14973
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AGH|A Chain A, Structural Features Of Ssdna Binding Protein Mosub1 From
Magnaporthe Oryzae
Length = 158
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 49 WCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
W + R V + +F+ I+IREYYE G++ PGKKGI L+ Q+ L ++N+EL
Sbjct: 49 WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAEL 108
>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|B Chain B, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|C Chain C, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|D Chain D, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|E Chain E, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|F Chain F, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|G Chain G, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|1PCF|H Chain H, Human Transcriptional Coactivator Pc4 C-Terminal Domain
pdb|2C62|A Chain A, Crystal Structure Of The Human Transcription Cofactor
Pc4 In Complex With Single-Stranded Dna
pdb|2C62|B Chain B, Crystal Structure Of The Human Transcription Cofactor
Pc4 In Complex With Single-Stranded Dna
pdb|2PHE|A Chain A, Model For Vp16 Binding To Pc4
pdb|2PHE|B Chain B, Model For Vp16 Binding To Pc4
Length = 66
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
MR+V V +F+G+ LI IREY+ + G++ PG+KGISL+ QW +L
Sbjct: 8 MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 52
>pdb|3S9U|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3S9U|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3SA1|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA1|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA2|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SA2|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SAI|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
pdb|3SAI|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
Length = 165
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 41 GHPLIMGRKNYEAIGRPLPGRRNIIVT 67
>pdb|3JW5|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW5|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JWC|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWC|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWF|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWF|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWK|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWK|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 44 GHPLIMGRKNYEAIGRPLPGRRNIIVT 70
>pdb|3E0B|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3E0B|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 166
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 42 GHPLIMGRKNYEAIGRPLPGRRNIIVT 68
>pdb|3JW3|A Chain A, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW3|B Chain B, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
Length = 168
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 44 GHPLIMGRKNYEAIGRPLPGRRNIIVT 70
>pdb|3JVX|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JVX|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JWM|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWM|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 44 GHPLIMGRKNYEAIGRPLPGRRNIIVT 70
>pdb|2QK8|A Chain A, Crystal Structure Of The Anthrax Drug Target, Bacillus
Anthracis Dihydrofolate Reductase
pdb|3DAT|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Bacillus Anthracis Dihydrofolate Reductase
Length = 162
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 38 GHPLIMGRKNYEAIGRPLPGRRNIIVT 64
>pdb|2KGK|A Chain A, Solution Structure Of Bacillus Anthracis Dihydrofolate
Reductase
Length = 172
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 38 GHPLIMGRKNYEAIGRPLPGRRNIIVT 64
>pdb|3FL8|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL8|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Rab1, A Tmp-Dihydrophthalazine
Derivative
pdb|3FL9|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|3FL9|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate
Reductase (Dhfr) With Trimethoprim
pdb|4ELB|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
Length = 166
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS 90
G PLI R+ YE G+ LPG++ I ++
Sbjct: 38 GHPLIMGRKNYEAIGRPLPGRRNIIVT 64
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph
And The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
With Folate And Nicotinamide Adenine Dinucleotide
Phosphate (Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate And
2'-monophosphoadenosine 5'- Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The
Folate(Dot)nadp+ Ternary Complex. Substrate Binding And
A Model For The Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The
Folate(Dot)nadp+ Ternary Complex. Substrate Binding And
A Model For The Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand
Binding Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand
Binding Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism
For Ligand Dissociation
Length = 159
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 37 NKPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIMGRHTWESIGRPLPGRKNIILSS 64
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 39 KPVIMGRHTWESIGRPLPGRKNIILSS 65
>pdb|2D0K|A Chain A, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
pdb|2D0K|B Chain B, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
Length = 159
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 RPLISIREYYEKNGQLLPGKKGISLSA 91
+P+I R +E G+ LPG+K I LS+
Sbjct: 38 KPVIYGRHTWESIGRPLPGRKNIILSS 64
>pdb|3IA4|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|C Chain C, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|D Chain D, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA5|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr)
pdb|3IA5|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr)
Length = 162
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS-ATQWRK-----LLTLQDSV 104
G+P++ R +E G+ LPG+ I LS T ++ + TL+D+V
Sbjct: 38 GKPIVMGRNTFESIGRPLPGRLNIVLSRQTDYQPEGVTVVATLEDAV 84
>pdb|2ZZA|A Chain A, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
pdb|2ZZA|B Chain B, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
Length = 162
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 64 GRPLISIREYYEKNGQLLPGKKGISLS-ATQWRK-----LLTLQDSV 104
G+P++ R +E G+ LPG+ I LS T ++ + TL+D+V
Sbjct: 38 GKPIVMGRNTFESIGRPLPGRLNIVLSRQTDYQPEGVTVVATLEDAV 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,946,804
Number of Sequences: 62578
Number of extensions: 103863
Number of successful extensions: 130
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 23
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)