BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14973
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila
melanogaster GN=Ssb-c31a PE=2 SV=1
Length = 110
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 20 GPAKKPQPAASK---KGGASKDGESSG-GPAGSWCLEGMRFVKVDEFRGRPLISIREYYE 75
GP + +PA+ K + D + SG A SW LEG+R V+++EFRGR + IRE+Y+
Sbjct: 16 GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75
Query: 76 KNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109
K GQ+LPGKKGISLS QW+KLL + + V ++
Sbjct: 76 KGGQILPGKKGISLSLIQWKKLLEVAEEVTRAIE 109
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 49 WCLEGM--RFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNS 106
W L + + + EFRG + IREYYEK+G +LPGKKGI+L+ +W+KL L V+
Sbjct: 30 WALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDD 89
Query: 107 EL 108
L
Sbjct: 90 SL 91
>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1
Length = 172
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 18 TRGPAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKN 77
++G K QP KG + +DG + W L R + FR L++IREYY+
Sbjct: 22 SKGNTGKAQPQELTKG-SDQDGNTF------WELGNNRRISSSVFRNTTLVNIREYYDAG 74
Query: 78 GQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
G+L+PGKKGISLS Q++ LL + +N++L
Sbjct: 75 GKLMPGKKGISLSLAQYQNLLKVIPQLNADL 105
>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15
OS=Gallus gallus GN=SUB1 PE=2 SV=1
Length = 126
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 21 PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
P KK + S KG AS +SS + + MR+V V +F+G+ LI IREY+ ++ G+
Sbjct: 36 PVKKQKTGESSKGAAS-SKQSSNRDENMFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGE 94
Query: 80 LLPGKKGISLSATQWRKL 97
+ PG+KGISL+ QW +L
Sbjct: 95 MKPGRKGISLNPEQWNQL 112
>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15
OS=Rattus norvegicus GN=Sub1 PE=2 SV=3
Length = 127
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 21 PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
P KK +P S + AS SS + + MR+V V +F+G+ LI IREY+ + G+
Sbjct: 36 PVKKQKPGESSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGE 95
Query: 80 LLPGKKGISLSATQWRKL 97
+ PG+KGISL+ QW +L
Sbjct: 96 MKPGRKGISLNMEQWSQL 113
>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis
thaliana GN=KELP PE=1 SV=1
Length = 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 51 LEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQW 94
L R V + EF+G+ L+SIREYY+K+G+ LP KGISL+ QW
Sbjct: 101 LSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQW 144
>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus
musculus GN=Sub1 PE=1 SV=3
Length = 127
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 21 PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
P KK +P + + AS SS + + MR+V V +F+G+ LI IREY+ + G+
Sbjct: 36 PVKKQKPGETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGE 95
Query: 80 LLPGKKGISLSATQWRKL 97
+ PG+KGISL+ QW +L
Sbjct: 96 MKPGRKGISLNMEQWSQL 113
>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis
thaliana GN=KIWI PE=1 SV=1
Length = 107
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 14 DREGTRGPAKK-PQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIRE 72
D T PAKK +PA D + R V V + G+ I IRE
Sbjct: 17 DESETHAPAKKVAKPA---------DDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIRE 67
Query: 73 YYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
+Y K+G+ LPGKKGISLS QW L + + L
Sbjct: 68 FYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKAL 103
>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15
OS=Pongo abelii GN=SUB1 PE=2 SV=1
Length = 127
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
MR+V V +F+G+ LI IREY+ + G++ PG+KGISL+ QW +L
Sbjct: 69 MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113
>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15
OS=Macaca fascicularis GN=SUB1 PE=2 SV=1
Length = 127
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
MR+V V +F+G+ LI IREY+ + G++ PG+KGISL+ QW +L
Sbjct: 69 MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113
>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo
sapiens GN=SUB1 PE=1 SV=3
Length = 127
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
MR+V V +F+G+ LI IREY+ + G++ PG+KGISL+ QW +L
Sbjct: 69 MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113
>sp|Q94045|TCP4_CAEEL Putative RNA polymerase II transcriptional coactivator
OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 53 GMRFVKVDEFRGRPLISIREYY-EKNGQ-LLPGKKGISLSATQWRKLLTL 100
+R+ V +F+G+ ++IREYY +++ Q ++P +KGISLS QW L L
Sbjct: 67 NLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGISLSKAQWANLKDL 116
>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUB1 PE=1
SV=1
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 57 VKVDEFRGRPLISIREYY--EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
V V +FR LI IREYY G++ PGKKGISL+ + +LL + +++ L
Sbjct: 49 VTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLTEDLYDELLKHRLNIDEAL 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,523,118
Number of Sequences: 539616
Number of extensions: 1856202
Number of successful extensions: 4722
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4684
Number of HSP's gapped (non-prelim): 41
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)