Query psy14973
Match_columns 111
No_of_seqs 124 out of 263
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 17:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2712|consensus 100.0 5.6E-33 1.2E-37 198.8 6.9 70 42-111 36-105 (108)
2 PF02229 PC4: Transcriptional 99.9 6.3E-25 1.4E-29 140.1 5.3 54 48-101 2-56 (56)
3 COG4443 Uncharacterized protei 92.6 0.083 1.8E-06 35.8 1.9 39 61-102 31-70 (72)
4 TIGR02530 flg_new flagellar op 71.0 4.4 9.6E-05 28.8 2.6 22 84-105 27-48 (96)
5 PF08880 QLQ: QLQ; InterPro: 58.5 8.6 0.00019 22.7 1.8 16 88-103 2-17 (37)
6 PF10815 ComZ: ComZ; InterPro 55.6 12 0.00026 24.4 2.2 22 83-104 22-43 (56)
7 COG1448 TyrB Aspartate/tyrosin 54.1 10 0.00022 33.0 2.3 18 85-102 185-202 (396)
8 cd04754 Commd6 COMM_Domain con 53.5 55 0.0012 22.9 5.5 47 60-108 36-85 (86)
9 PF01707 Peptidase_C9: Peptida 50.8 3.1 6.8E-05 33.2 -1.2 14 85-98 62-75 (202)
10 PF12651 RHH_3: Ribbon-helix-h 47.0 32 0.00069 20.6 3.1 19 85-103 5-23 (44)
11 TIGR02501 type_III_yscE type I 43.4 35 0.00075 22.5 3.1 21 89-109 37-57 (67)
12 PF09038 53-BP1_Tudor: Tumour 43.0 7.1 0.00015 28.9 -0.3 29 72-100 86-117 (122)
13 PF08988 DUF1895: Protein of u 42.6 37 0.00079 22.5 3.1 21 89-109 38-58 (68)
14 PF13101 DUF3945: Protein of u 41.5 17 0.00037 23.0 1.3 15 85-99 31-45 (59)
15 TIGR02675 tape_meas_nterm tape 38.6 41 0.00089 22.0 2.9 22 89-110 31-52 (75)
16 COG3530 Uncharacterized protei 37.4 5.2 0.00011 27.0 -1.6 29 59-88 16-48 (71)
17 PF02866 Ldh_1_C: lactate/mala 36.9 1.2E+02 0.0026 22.1 5.4 44 66-110 126-169 (174)
18 PF13487 HD_5: HD domain; PDB: 34.3 56 0.0012 20.3 2.9 23 88-110 2-24 (64)
19 PF14164 YqzH: YqzH-like prote 33.3 48 0.001 22.0 2.5 17 88-104 25-41 (64)
20 PF08743 Nse4_C: Nse4 C-termin 30.7 38 0.00082 23.0 1.8 17 86-102 68-84 (93)
21 COG5129 MAK16 Nuclear protein 30.5 1.1E+02 0.0023 25.6 4.6 56 42-108 35-96 (303)
22 PF11580 DUF3239: Protein of u 30.4 28 0.0006 25.8 1.1 19 88-106 110-128 (128)
23 cd01277 HINT_subgroup HINT (hi 30.4 70 0.0015 20.7 3.0 23 88-110 50-72 (103)
24 PF04358 DsrC: DsrC like prote 28.9 32 0.0007 24.5 1.2 18 83-100 33-50 (109)
25 KOG3048|consensus 28.7 66 0.0014 24.8 2.9 60 44-109 62-125 (153)
26 PF09655 Nitr_red_assoc: Conse 28.0 23 0.00049 26.9 0.3 17 83-99 102-118 (144)
27 PF06831 H2TH: Formamidopyrimi 27.8 50 0.0011 22.4 2.0 27 78-104 51-77 (92)
28 PF08848 DUF1818: Domain of un 26.8 1.1E+02 0.0023 22.6 3.6 25 86-110 28-52 (117)
29 TIGR03342 dsrC_tusE_dsvC sulfu 26.4 41 0.00089 24.1 1.4 17 84-100 33-49 (108)
30 PRK11508 sulfur transfer prote 23.9 45 0.00098 23.9 1.2 17 84-100 34-50 (109)
31 cd01275 FHIT FHIT (fragile his 23.4 1.1E+02 0.0023 21.1 3.0 40 62-110 33-72 (126)
32 PF06413 Neugrin: Neugrin; In 22.5 30 0.00066 27.6 0.1 19 63-81 204-222 (225)
33 PF04210 MtrG: Tetrahydrometha 22.4 1.5E+02 0.0032 20.2 3.4 23 87-109 7-29 (70)
34 PRK13398 3-deoxy-7-phosphohept 21.9 83 0.0018 25.3 2.5 25 84-108 242-266 (266)
35 COG4064 MtrG Tetrahydromethano 21.9 1.3E+02 0.0028 20.6 3.1 23 87-109 10-32 (75)
36 PF03102 NeuB: NeuB family; I 21.9 91 0.002 24.9 2.7 25 85-109 213-237 (241)
37 TIGR03586 PseI pseudaminic aci 21.3 98 0.0021 25.8 2.9 24 86-109 235-258 (327)
38 PRK14011 prefoldin subunit alp 20.3 2.8E+02 0.006 20.6 4.9 62 44-110 49-113 (144)
39 PF14840 DNA_pol3_delt_C: Proc 20.2 1.4E+02 0.003 21.3 3.2 22 89-110 80-101 (125)
No 1
>KOG2712|consensus
Probab=99.98 E-value=5.6e-33 Score=198.84 Aligned_cols=70 Identities=44% Similarity=0.728 Sum_probs=67.7
Q ss_pred CCCCCeeEEeCCeeEEEEeeeCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973 42 SGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY 111 (111)
Q Consensus 42 ~~~~~~~~~Ls~~rrVtV~~FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~ 111 (111)
+.++..+|.|+++|||||++|+|+.||||||||.++|+|+|||||||||++||.+|++++++||+||.+|
T Consensus 36 ~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKGISLs~~qW~~Lk~~~~eId~Al~~l 105 (108)
T KOG2712|consen 36 DSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKGISLSLEQWSKLKEHIEEIDKALRKL 105 (108)
T ss_pred CcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=99.91 E-value=6.3e-25 Score=140.06 Aligned_cols=54 Identities=46% Similarity=0.781 Sum_probs=48.2
Q ss_pred eEEeCCeeEEEEeeeCCceeEEeEEEEec-CCeeccccceeeeCHHHHHHHHHhH
Q psy14973 48 SWCLEGMRFVKVDEFRGRPLISIREYYEK-NGQLLPGKKGISLSATQWRKLLTLQ 101 (111)
Q Consensus 48 ~~~Ls~~rrVtV~~FKG~~~VdIREyYek-dGe~kPgKKGISLs~eqw~~Lk~~i 101 (111)
+|.++.+++|+|++|+|++||||||||++ ||+|+||+|||||+++||.+|++++
T Consensus 2 ~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~~q~~~l~~~l 56 (56)
T PF02229_consen 2 IKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTPEQWKELKEAL 56 (56)
T ss_dssp EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-HHHHHHHHHH-
T ss_pred cccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCHHHHHHHHhhC
Confidence 57789999999999999999999999965 9999999999999999999999874
No 3
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=0.083 Score=35.82 Aligned_cols=39 Identities=31% Similarity=0.576 Sum_probs=30.3
Q ss_pred eeCCce-eEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973 61 EFRGRP-LISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD 102 (111)
Q Consensus 61 ~FKG~~-~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~ 102 (111)
.|+|+. -.|||.|-.+. .+=| |||+||-+++..|++.+.
T Consensus 31 SwNg~~~KyDiR~Wspdh--~KMG-KGiTLt~eE~~~l~d~l~ 70 (72)
T COG4443 31 SWNGRPPKYDIRAWSPDH--SKMG-KGITLTNEEFKALKDLLN 70 (72)
T ss_pred ccCCCCCcCcccccCcch--hhhc-CceeecHHHHHHHHHHHh
Confidence 477775 78999986432 2345 999999999999998764
No 4
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=71.02 E-value=4.4 Score=28.80 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=18.8
Q ss_pred cceeeeCHHHHHHHHHhHHHHH
Q psy14973 84 KKGISLSATQWRKLLTLQDSVN 105 (111)
Q Consensus 84 KKGISLs~eqw~~Lk~~i~~Id 105 (111)
..||.|+.++|..|.+.+....
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~ 48 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAE 48 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999998877654
No 5
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.54 E-value=8.6 Score=22.72 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.7
Q ss_pred eeCHHHHHHHHHhHHH
Q psy14973 88 SLSATQWRKLLTLQDS 103 (111)
Q Consensus 88 SLs~eqw~~Lk~~i~~ 103 (111)
++|++||..|+..+-.
T Consensus 2 ~FT~~Ql~~L~~Qi~a 17 (37)
T PF08880_consen 2 PFTPAQLQELRAQILA 17 (37)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5799999999988764
No 6
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=55.59 E-value=12 Score=24.41 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.0
Q ss_pred ccceeeeCHHHHHHHHHhHHHH
Q psy14973 83 GKKGISLSATQWRKLLTLQDSV 104 (111)
Q Consensus 83 gKKGISLs~eqw~~Lk~~i~~I 104 (111)
-++||-|++++...|.+.+-.+
T Consensus 22 ~k~GIeLsme~~qP~m~L~~~V 43 (56)
T PF10815_consen 22 DKKGIELSMEMLQPLMQLLTKV 43 (56)
T ss_pred HHcCccCCHHHHHHHHHHHHHH
Confidence 3699999999999999887765
No 7
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=54.15 E-value=10 Score=33.02 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.9
Q ss_pred ceeeeCHHHHHHHHHhHH
Q psy14973 85 KGISLSATQWRKLLTLQD 102 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~ 102 (111)
-||-+|.+||.+|.+.+.
T Consensus 185 TG~D~t~~qW~~l~~~~~ 202 (396)
T COG1448 185 TGIDPTEEQWQELADLIK 202 (396)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 399999999999988765
No 8
>cd04754 Commd6 COMM_Domain containing protein 6. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=53.55 E-value=55 Score=22.91 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=37.3
Q ss_pred eeeC--CceeEEeEEEEec-CCeeccccceeeeCHHHHHHHHHhHHHHHHHh
Q psy14973 60 DEFR--GRPLISIREYYEK-NGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108 (111)
Q Consensus 60 ~~FK--G~~~VdIREyYek-dGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai 108 (111)
.+.+ |.+||.+--=..+ +|+..| +-+-||.+|+..|...+.++.+.|
T Consensus 36 d~~~sl~~Pfl~l~L~V~~~~G~~~~--~~~EmTlpEFq~f~~~~~~~~a~l 85 (86)
T cd04754 36 DTCRSLNSPYVAVTLKVADPSGQVVT--KSFEMTIPEFQNFSRQFKEMAAVL 85 (86)
T ss_pred hhhhhcCCceEEEEEEEEccCCCccc--eEEEEcHHHHHHHHHHHHHHHHhc
Confidence 3444 8889887665533 898877 599999999999999999887765
No 9
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=50.78 E-value=3.1 Score=33.17 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=9.0
Q ss_pred ceeeeCHHHHHHHH
Q psy14973 85 KGISLSATQWRKLL 98 (111)
Q Consensus 85 KGISLs~eqw~~Lk 98 (111)
-||.||.+||+.|-
T Consensus 62 AGI~LT~~qW~~l~ 75 (202)
T PF01707_consen 62 AGIQLTAEQWSTLF 75 (202)
T ss_dssp TT----HHHHCCCH
T ss_pred cCcccCHHHHHHHh
Confidence 79999999999887
No 10
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=47.04 E-value=32 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.9
Q ss_pred ceeeeCHHHHHHHHHhHHH
Q psy14973 85 KGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~~ 103 (111)
=+++|+.++++.|.+...+
T Consensus 5 ~t~~l~~el~~~L~~ls~~ 23 (44)
T PF12651_consen 5 FTFSLDKELYEKLKELSEE 23 (44)
T ss_pred EEEecCHHHHHHHHHHHHH
Confidence 4789999999999987654
No 11
>TIGR02501 type_III_yscE type III secretion system protein, YseE family. Members of this family are found exclusively in type III secretion appparatus gene clusters in bacteria. Those bacteria with a protein from this family tend to target animal cells, as does Yersinia pestis. This protein is small (about 70 amino acids) and not well characterized.
Probab=43.38 E-value=35 Score=22.48 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.9
Q ss_pred eCHHHHHHHHHhHHHHHHHhh
Q psy14973 89 LSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 89 Ls~eqw~~Lk~~i~~Id~ai~ 109 (111)
.+|+||..|...+.++++|++
T Consensus 37 ~tp~qYq~l~~~~~A~~aA~~ 57 (67)
T TIGR02501 37 GDPQQYQEWQLLADAIEAAIK 57 (67)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999988875
No 12
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=43.00 E-value=7.1 Score=28.93 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEE--ecCCeecc-ccceeeeCHHHHHHHHHh
Q psy14973 72 EYY--EKNGQLLP-GKKGISLSATQWRKLLTL 100 (111)
Q Consensus 72 EyY--ekdGe~kP-gKKGISLs~eqw~~Lk~~ 100 (111)
-|| +.||+.+- -.+.|+|+++|-+.|++.
T Consensus 86 ~yY~Ve~dG~~~~~~r~~viLs~~Q~~~Lre~ 117 (122)
T PF09038_consen 86 VYYCVETDGQRKRYQRKDVILSADQANRLREQ 117 (122)
T ss_dssp EEEEEEETTEEEEEEGGGEEEEHHHHHCCCCC
T ss_pred EEEEEEECCCEEEEEeeeEEEcHHHHHHHHHh
Confidence 355 77875332 368999999999888765
No 13
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=42.57 E-value=37 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.298 Sum_probs=18.8
Q ss_pred eCHHHHHHHHHhHHHHHHHhh
Q psy14973 89 LSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 89 Ls~eqw~~Lk~~i~~Id~ai~ 109 (111)
++|+||..+....++|.+|+.
T Consensus 38 ~~P~eyQq~q~~~~AieAA~~ 58 (68)
T PF08988_consen 38 GTPQEYQQLQQQYDAIEAAIA 58 (68)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998875
No 14
>PF13101 DUF3945: Protein of unknown function (DUF3945)
Probab=41.54 E-value=17 Score=22.98 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.7
Q ss_pred ceeeeCHHHHHHHHH
Q psy14973 85 KGISLSATQWRKLLT 99 (111)
Q Consensus 85 KGISLs~eqw~~Lk~ 99 (111)
+|+.||++|.+.|++
T Consensus 31 ~g~~Ls~~q~~~L~~ 45 (59)
T PF13101_consen 31 KGVELSPEQKEDLRE 45 (59)
T ss_pred cCccCCHHHHHHHHC
Confidence 699999999999975
No 15
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=38.62 E-value=41 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.8
Q ss_pred eCHHHHHHHHHhHHHHHHHhhh
Q psy14973 89 LSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 89 Ls~eqw~~Lk~~i~~Id~ai~k 110 (111)
|+.++|+.|.+.+|.+-++|.+
T Consensus 31 v~~ee~n~~~e~~p~~~~~lAk 52 (75)
T TIGR02675 31 LRGEEINSLLEALPGALQALAK 52 (75)
T ss_pred ccHHHHHHHHHHhHHHHHHHHH
Confidence 6789999999999988777764
No 16
>COG3530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.36 E-value=5.2 Score=27.04 Aligned_cols=29 Identities=38% Similarity=0.733 Sum_probs=21.6
Q ss_pred EeeeCCceeEEeEEEE----ecCCeeccccceee
Q psy14973 59 VDEFRGRPLISIREYY----EKNGQLLPGKKGIS 88 (111)
Q Consensus 59 V~~FKG~~~VdIREyY----ekdGe~kPgKKGIS 88 (111)
.-.|+|+++||+-|-| .+.| .-||+-|.-
T Consensus 16 FGKYqGR~liDLPe~YLlWFarkg-FP~G~lG~L 48 (71)
T COG3530 16 FGKYQGRVLIDLPEEYLLWFARKG-FPPGKLGRL 48 (71)
T ss_pred cccccceeeecCCHHHHHHHHHhC-CCchHHHHH
Confidence 4579999999999966 5655 667766643
No 17
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=36.92 E-value=1.2e+02 Score=22.08 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=35.2
Q ss_pred eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 66 PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 66 ~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
+|+.+---..++|.+.- -.++.|+.++.+.|.+.++.|.+.+++
T Consensus 126 v~~s~P~~ig~~Gv~~i-~~~~~L~~~E~~~l~~sa~~l~~~i~~ 169 (174)
T PF02866_consen 126 VYFSVPVVIGKNGVEKI-VEDLPLSEEEQEKLKESAKELKKEIEK 169 (174)
T ss_dssp EEEEEEEEEETTEEEEE-ECSBSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecceEEEcCCeeEEE-eCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777788887665 233789999999999999999888764
No 18
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=34.32 E-value=56 Score=20.29 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=16.2
Q ss_pred eeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 88 SLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 88 SLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
.||++||..++.....--+.|.+
T Consensus 2 ~Lt~~e~~~~~~Hp~~~~~~l~~ 24 (64)
T PF13487_consen 2 KLTPEEREIIQQHPEYGAELLSQ 24 (64)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHc
Confidence 58999999998877665555543
No 19
>PF14164 YqzH: YqzH-like protein
Probab=33.30 E-value=48 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.4
Q ss_pred eeCHHHHHHHHHhHHHH
Q psy14973 88 SLSATQWRKLLTLQDSV 104 (111)
Q Consensus 88 SLs~eqw~~Lk~~i~~I 104 (111)
.|+.++|+.|.+.+...
T Consensus 25 pls~~E~~~L~~~i~~~ 41 (64)
T PF14164_consen 25 PLSDEEWEELCKHIQER 41 (64)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 38999999999888664
No 20
>PF08743 Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1 [].
Probab=30.71 E-value=38 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.2
Q ss_pred eeeeCHHHHHHHHHhHH
Q psy14973 86 GISLSATQWRKLLTLQD 102 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~ 102 (111)
=++|+.++|+.|.+...
T Consensus 68 I~~ld~~~W~~li~~~~ 84 (93)
T PF08743_consen 68 ILSLDYEDWQELIEKYN 84 (93)
T ss_pred EEEcCHHHHHHHHHHhC
Confidence 46899999999998653
No 21
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=30.47 E-value=1.1e+02 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCCCeeEEeCCeeEEEEeeeCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHH------HhHHHHHHHh
Q psy14973 42 SGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLL------TLQDSVNSEL 108 (111)
Q Consensus 42 ~~~~~~~~~Ls~~rrVtV~~FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk------~~i~~Id~ai 108 (111)
+=.+-..|.|.+.|+.||+.=.|+.|+-+.+ . --...+...|+.++ +++.+||+-|
T Consensus 35 GLC~RqSCPLANSrYATVr~dngkLyLymKt---p--------ERaH~P~klwerIkLSkNY~kAL~QIde~L 96 (303)
T COG5129 35 GLCDRQSCPLANSRYATVRADNGKLYLYMKT---P--------ERAHVPRKLWERIKLSKNYEKALKQIDESL 96 (303)
T ss_pred eeeccccCcCccCcceEEEecCCEEEEEecC---h--------hhccCcHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3466788999999999999999999974432 1 23445567787765 4556666544
No 22
>PF11580 DUF3239: Protein of unknown function (DUF3239); InterPro: IPR021632 This entry contains possible membrane proteins, however this cannot be confirmed. Currently they have no known function. ; PDB: 3C8I_B.
Probab=30.43 E-value=28 Score=25.78 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=15.3
Q ss_pred eeCHHHHHHHHHhHHHHHH
Q psy14973 88 SLSATQWRKLLTLQDSVNS 106 (111)
Q Consensus 88 SLs~eqw~~Lk~~i~~Id~ 106 (111)
+++.+||+.|..+++.+++
T Consensus 110 aIp~~eW~~L~~~~~r~~~ 128 (128)
T PF11580_consen 110 AIPQEEWRQLEKNLKRLEQ 128 (128)
T ss_dssp HS-HHHHHHHHHHGGGHHH
T ss_pred hCCHHHHHHHHHHHhhhcC
Confidence 5788999999999988764
No 23
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=30.37 E-value=70 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred eeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 88 SLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 88 SLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
.|+.++|..|...+..+..++++
T Consensus 50 ~l~~~e~~~l~~~~~~v~~~l~~ 72 (103)
T cd01277 50 DLDPEELAELILAAKKVARALKK 72 (103)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999888875
No 24
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=28.90 E-value=32 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=11.4
Q ss_pred ccceeeeCHHHHHHHHHh
Q psy14973 83 GKKGISLSATQWRKLLTL 100 (111)
Q Consensus 83 gKKGISLs~eqw~~Lk~~ 100 (111)
-.-||.||.++|..+.-.
T Consensus 33 ~~egI~Ltd~HW~vI~fl 50 (109)
T PF04358_consen 33 KEEGIELTDEHWEVIRFL 50 (109)
T ss_dssp HCTT-S--HHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 456999999999987543
No 25
>KOG3048|consensus
Probab=28.68 E-value=66 Score=24.75 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=36.0
Q ss_pred CCCeeEEeCCeeEE--EEeeeCCceeEEeEE-EE-ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 44 GPAGSWCLEGMRFV--KVDEFRGRPLISIRE-YY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 44 ~~~~~~~Ls~~rrV--tV~~FKG~~~VdIRE-yY-ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
.-...+.|+..-+| ++.+ ..+.+|||-. || +++-+ .++..=.---+-|.++++.|+.+++
T Consensus 62 Gk~~LVPLTsSlYVPGkl~d-~~k~lVDIGTGYyVEK~~e-----~akdyfkRKve~l~kq~e~i~~i~~ 125 (153)
T KOG3048|consen 62 GKKLLVPLTSSLYVPGKLSD-NSKFLVDIGTGYYVEKDAE-----DAKDYFKRKVEYLTKQIEQIEGILK 125 (153)
T ss_pred CCeEEEecccceeccceecc-ccceeEeccCceEEeechH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455577766555 5666 7889999998 77 77632 1112212223556667777776665
No 26
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=27.96 E-value=23 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.3
Q ss_pred ccceeeeCHHHHHHHHH
Q psy14973 83 GKKGISLSATQWRKLLT 99 (111)
Q Consensus 83 gKKGISLs~eqw~~Lk~ 99 (111)
...||.++++||..|-.
T Consensus 102 ~~~gv~~t~~qW~~L~p 118 (144)
T PF09655_consen 102 QEFGVPLTLEQWAALTP 118 (144)
T ss_pred HHcCCCCCHHHHhcCCH
Confidence 56799999999998854
No 27
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....
Probab=27.79 E-value=50 Score=22.37 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=22.8
Q ss_pred CeeccccceeeeCHHHHHHHHHhHHHH
Q psy14973 78 GQLLPGKKGISLSATQWRKLLTLQDSV 104 (111)
Q Consensus 78 Ge~kPgKKGISLs~eqw~~Lk~~i~~I 104 (111)
-.+.|..+.-+|+.+||..|.+.+-.|
T Consensus 51 a~i~P~~~~~~L~~~~~~~l~~~~~~v 77 (92)
T PF06831_consen 51 AGIHPERPASSLSEEELRRLHEAIKRV 77 (92)
T ss_dssp TTB-TTSBGGGSHHHHHHHHHHHHHHH
T ss_pred cCCCccCccccCCHHHHHHHHHHHHHH
Confidence 357899999999999999998888775
No 28
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=26.75 E-value=1.1e+02 Score=22.58 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=20.6
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
-|-||..+|+.|+..+..+.+.+..
T Consensus 28 AiELT~~E~~~f~~Ll~~L~~q~~~ 52 (117)
T PF08848_consen 28 AIELTEAEFNDFCRLLQQLAEQMQA 52 (117)
T ss_dssp EEEE-HHHHHHHHHHHHHHHHHHHC
T ss_pred heeecHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999998887653
No 29
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=26.37 E-value=41 Score=24.09 Aligned_cols=17 Identities=29% Similarity=0.687 Sum_probs=13.7
Q ss_pred cceeeeCHHHHHHHHHh
Q psy14973 84 KKGISLSATQWRKLLTL 100 (111)
Q Consensus 84 KKGISLs~eqw~~Lk~~ 100 (111)
.-||.||.+.|+.+.-.
T Consensus 33 ~egieLT~~Hw~vI~~l 49 (108)
T TIGR03342 33 EEGIELTEAHWEVINFL 49 (108)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 46999999999876543
No 30
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=23.85 E-value=45 Score=23.94 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=13.6
Q ss_pred cceeeeCHHHHHHHHHh
Q psy14973 84 KKGISLSATQWRKLLTL 100 (111)
Q Consensus 84 KKGISLs~eqw~~Lk~~ 100 (111)
.-||.||.+.|+.+.-.
T Consensus 34 ~egieLT~~HW~VI~~l 50 (109)
T PRK11508 34 NEGISLSPEHWEVVRFV 50 (109)
T ss_pred HhCCCCCHHHHHHHHHH
Confidence 46999999999876543
No 31
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=23.36 E-value=1.1e+02 Score=21.07 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=29.7
Q ss_pred eCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 62 FRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 62 FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
+.|.++|=-|+.+.. =..|+.++|..|...+..+..++++
T Consensus 33 ~~gh~lIiPk~H~~~---------~~~L~~~e~~~l~~~~~~v~~~l~~ 72 (126)
T cd01275 33 NPGHVLVVPYRHVPR---------LEDLTPEEIADLFKLVQLAMKALKV 72 (126)
T ss_pred CCCcEEEEeccccCC---------hhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 466677766665532 1358899999999999998888875
No 32
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=22.52 E-value=30 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=13.5
Q ss_pred CCceeEEeEEEEecCCeec
Q psy14973 63 RGRPLISIREYYEKNGQLL 81 (111)
Q Consensus 63 KG~~~VdIREyYekdGe~k 81 (111)
.+.+|===|+||+.||+.+
T Consensus 204 ~~kvvQ~G~eFfDsdGnFL 222 (225)
T PF06413_consen 204 PSKVVQKGREFFDSDGNFL 222 (225)
T ss_pred CCccEEcCcccCCCCCCee
Confidence 4455444499999999865
No 33
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.43 E-value=1.5e+02 Score=20.15 Aligned_cols=23 Identities=4% Similarity=0.387 Sum_probs=20.0
Q ss_pred eeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 87 ISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
+-.+++|++++.+-+++|++.+.
T Consensus 7 viv~~~~~~~i~~rLd~iEeKvE 29 (70)
T PF04210_consen 7 VIVDPDDFNEIMKRLDEIEEKVE 29 (70)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998764
No 34
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.89 E-value=83 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.4
Q ss_pred cceeeeCHHHHHHHHHhHHHHHHHh
Q psy14973 84 KKGISLSATQWRKLLTLQDSVNSEL 108 (111)
Q Consensus 84 KKGISLs~eqw~~Lk~~i~~Id~ai 108 (111)
---.||+++|+..|.+.+..|++++
T Consensus 242 D~~~sl~p~~l~~l~~~i~~~~~~~ 266 (266)
T PRK13398 242 DARQTLNFEEMKELVDELKPMAKAL 266 (266)
T ss_pred chhhcCCHHHHHHHHHHHHHHHhhC
Confidence 3458999999999999999998764
No 35
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=21.88 E-value=1.3e+02 Score=20.63 Aligned_cols=23 Identities=4% Similarity=0.331 Sum_probs=19.9
Q ss_pred eeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 87 ISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
+-.++++++++.+-+++|++.+.
T Consensus 10 v~v~~~dfne~~kRLdeieekve 32 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEKVE 32 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998764
No 36
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.87 E-value=91 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.5
Q ss_pred ceeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 85 KGISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
--.||.++|+..|.+.+..+..|+-
T Consensus 213 h~~Sl~p~el~~lv~~ir~~~~alG 237 (241)
T PF03102_consen 213 HKFSLEPDELKQLVRDIREVEKALG 237 (241)
T ss_dssp GCCCB-HHHHHHHHHHHHHHHHHCS
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999998874
No 37
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.26 E-value=98 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.5
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
=.||+++|+..|...+..|..++.
T Consensus 235 ~~Sl~p~e~~~lv~~ir~~~~~lg 258 (327)
T TIGR03586 235 AFSLEPDEFKALVKEVRNAWLALG 258 (327)
T ss_pred hccCCHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999998874
No 38
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.33 E-value=2.8e+02 Score=20.63 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCCeeEEeCCeeEEEEeeeC-CceeEEeEE-EE-ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 44 GPAGSWCLEGMRFVKVDEFR-GRPLISIRE-YY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 44 ~~~~~~~Ls~~rrVtV~~FK-G~~~VdIRE-yY-ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
+.+..+.|+..-+|.-.-=. .+++|||-. || +++ -...|..=...-+.|.+.+..|+++|.+
T Consensus 49 ~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~-----~~eA~~~~~~ri~~l~~~~~~l~~~i~~ 113 (144)
T PRK14011 49 SEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKD-----VSEVIEDFKKSVEELDKTKKEGNKKIEE 113 (144)
T ss_pred CCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEec-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899998888766654 789999987 77 653 2344444444444555555566555543
No 39
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=20.23 E-value=1.4e+02 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred eCHHHHHHHHHhHHHHHHHhhh
Q psy14973 89 LSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 89 Ls~eqw~~Lk~~i~~Id~ai~k 110 (111)
|+..+|..+...+..||.+|+.
T Consensus 80 ls~~~L~~ll~~~a~iD~~iKg 101 (125)
T PF14840_consen 80 LSLQQLEQLLQLLAQIDRAIKG 101 (125)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999885
Done!