Query psy14973
Match_columns 111
No_of_seqs 124 out of 263
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:18:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 100.0 1.8E-33 6E-38 185.3 8.7 65 47-111 1-66 (66)
2 4agh_A Mosub1, transcription c 100.0 1.4E-33 4.7E-38 211.8 8.7 87 21-111 25-111 (158)
3 3pm7_A Uncharacterized protein 96.8 0.0033 1.1E-07 42.5 5.9 47 54-103 24-71 (80)
4 4g06_A Uncharacterized protein 96.7 0.0069 2.4E-07 40.8 7.0 46 54-102 31-77 (79)
5 2l3a_A Uncharacterized protein 95.8 0.033 1.1E-06 37.8 6.6 46 54-102 26-72 (82)
6 2ltd_A Uncharacterized protein 92.5 0.014 4.9E-07 39.4 0.0 46 55-103 25-71 (80)
7 3dmc_A NTF2-like protein; stru 73.1 4.5 0.00015 27.1 4.1 26 55-80 108-133 (134)
8 3trk_A Nonstructural polyprote 58.7 3.3 0.00011 33.8 1.3 14 85-98 23-36 (324)
9 2qfm_A Spermine synthase; sper 46.0 22 0.00076 28.9 4.2 37 44-81 42-81 (364)
10 3fs2_A 2-dehydro-3-deoxyphosph 41.2 11 0.00038 30.1 1.7 25 87-111 274-298 (298)
11 4gua_A Non-structural polyprot 40.9 9.2 0.00031 34.0 1.3 15 85-99 28-42 (670)
12 2g3r_A Tumor suppressor P53-bi 40.1 20 0.00068 25.6 2.7 27 75-101 93-120 (123)
13 3o39_A Periplasmic protein rel 36.8 16 0.00056 24.9 1.8 21 83-103 12-32 (108)
14 2hwk_A Helicase NSP2; rossman 32.6 9.6 0.00033 31.2 0.1 13 85-97 22-34 (320)
15 2nvn_A Hypothetical protein; s 30.9 55 0.0019 23.2 3.8 25 86-110 33-57 (122)
16 3p7m_A Malate dehydrogenase; p 30.5 1.7E+02 0.0059 22.6 7.0 42 66-110 273-314 (321)
17 2jtq_A Phage shock protein E; 30.1 27 0.00092 21.0 1.9 30 65-96 2-31 (85)
18 3tl2_A Malate dehydrogenase; c 29.9 1.9E+02 0.0065 22.3 7.4 44 66-111 271-314 (315)
19 3en8_A Uncharacterized NTF-2 l 29.9 79 0.0027 20.6 4.3 26 55-80 91-116 (128)
20 3or1_C Sulfite reductase GAMA; 29.1 22 0.00075 24.3 1.4 19 83-101 35-54 (105)
21 3sz8_A 2-dehydro-3-deoxyphosph 28.1 25 0.00084 27.8 1.7 24 87-110 255-278 (285)
22 1sau_A Sulfite reductase, desu 28.0 25 0.00086 24.6 1.6 16 85-100 42-57 (115)
23 3g8r_A Probable spore coat pol 27.8 44 0.0015 27.1 3.2 24 86-109 237-260 (350)
24 3tml_A 2-dehydro-3-deoxyphosph 27.0 26 0.00088 27.7 1.7 24 87-110 256-279 (288)
25 2wqp_A Polysialic acid capsule 26.6 42 0.0014 27.1 2.9 37 73-109 236-272 (349)
26 4h51_A Aspartate aminotransfer 26.2 38 0.0013 27.1 2.5 19 85-103 203-221 (420)
27 1zw0_A Type III secretion prot 26.2 66 0.0022 20.7 3.2 20 90-109 37-56 (66)
28 1ji8_A Dissimilatory siroheme- 25.8 29 0.00098 24.2 1.5 17 83-99 41-58 (111)
29 2bt9_A Lectin; sugar recogniti 25.6 66 0.0023 21.5 3.3 22 56-79 4-25 (90)
30 2it9_A Hypothetical protein; s 25.4 57 0.002 23.2 3.1 24 86-109 31-54 (127)
31 3f4a_A Uncharacterized protein 25.0 64 0.0022 22.5 3.3 43 51-96 27-82 (169)
32 1vr6_A Phospho-2-dehydro-3-deo 24.7 54 0.0018 26.5 3.2 26 85-110 322-347 (350)
33 3c8i_A Putative membrane prote 24.6 27 0.00093 25.4 1.3 22 87-108 111-132 (141)
34 2ba3_A NIKA; dimer, bacterial 24.5 66 0.0023 18.1 2.8 19 85-103 18-36 (51)
35 4fus_A RTX toxins and related 23.5 14 0.00046 33.1 -0.6 25 64-102 604-628 (695)
36 1yx3_A Hypothetical protein DS 23.1 33 0.0011 24.6 1.4 18 83-100 56-73 (132)
37 2uwj_E Type III export protein 22.8 82 0.0028 20.4 3.2 21 89-109 42-62 (70)
38 2gnp_A Transcriptional regulat 22.2 37 0.0013 25.5 1.7 25 72-96 193-220 (266)
39 2x0j_A Malate dehydrogenase; o 21.9 74 0.0025 24.6 3.4 34 75-111 259-292 (294)
40 2nwr_A 2-dehydro-3-deoxyphosph 20.9 40 0.0014 26.1 1.6 25 86-110 235-259 (267)
41 1o60_A 2-dehydro-3-deoxyphosph 20.7 39 0.0013 26.4 1.6 25 86-110 252-276 (292)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=100.00 E-value=1.8e-33 Score=185.32 Aligned_cols=65 Identities=37% Similarity=0.782 Sum_probs=63.1
Q ss_pred eeEEeCCeeEEEEeeeCCceeEEeEEEE-ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973 47 GSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY 111 (111)
Q Consensus 47 ~~~~Ls~~rrVtV~~FKG~~~VdIREyY-ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~ 111 (111)
.+|+||++|+|+|++|+|++|||||||| ++||+++||||||||+++||++|++++++||+||++|
T Consensus 1 ~~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~ 66 (66)
T 1pcf_A 1 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp CEEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999999999 9999999999999999999999999999999999976
No 2
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=100.00 E-value=1.4e-33 Score=211.79 Aligned_cols=87 Identities=37% Similarity=0.638 Sum_probs=69.1
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCeeEEeCCeeEEEEeeeCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHh
Q psy14973 21 PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTL 100 (111)
Q Consensus 21 p~Kk~k~~~~~~~~~~~~~~s~~~~~~~~~Ls~~rrVtV~~FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~ 100 (111)
|+|++++.++.... +. ++++++.+|+||++|||+|++|+|++||||||||+++|+|+||||||||+++||+.|+++
T Consensus 25 ~~Kk~k~~~~~~~~-~~---~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~ 100 (158)
T 4agh_A 25 PVKKAKSKASNPGG-SQ---VDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKA 100 (158)
T ss_dssp -------------C-CE---ECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHH
T ss_pred CccccccccCCCCC-Cc---cCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHH
Confidence 44767655544222 22 577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhC
Q psy14973 101 QDSVNSELDKY 111 (111)
Q Consensus 101 i~~Id~ai~k~ 111 (111)
+++|++||+++
T Consensus 101 ~~~I~~ai~~~ 111 (158)
T 4agh_A 101 IPAINAELRSR 111 (158)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999999864
No 3
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=96.78 E-value=0.0033 Score=42.51 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=36.5
Q ss_pred eeEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHH
Q psy14973 54 MRFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 54 ~rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~ 103 (111)
.+-+..-.|.|+ +-.|||.|= .| -.+.| |||+||.|+...|++.+..
T Consensus 24 ~KELNlVSWN~~~pKyDIR~W~-pd-h~kMg-KGITLT~eE~~~Lk~~L~~ 71 (80)
T 3pm7_A 24 RKELNLISWNGRPPKFDLREWA-PD-HEKMG-KGITLTNEEFAELSKTIKS 71 (80)
T ss_dssp EEEEEEECGGGCCCEEEEEEEC-TT-SSSEE-EEEEECHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCCCCCccccccC-cc-hhhcc-CcceeCHHHHHHHHHHHHH
Confidence 466777788866 489999984 33 23566 9999999999999988764
No 4
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.0069 Score=40.85 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=36.6
Q ss_pred eeEEEEeeeCCce-eEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973 54 MRFVKVDEFRGRP-LISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD 102 (111)
Q Consensus 54 ~rrVtV~~FKG~~-~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~ 102 (111)
.+-+..-.|.|+. -.|||.|= .|- .+.| |||+||.|+...|++.+.
T Consensus 31 ~KELNlVSWN~~~pKyDIR~W~-pdh-~kMg-KGITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 31 TKEINRVSFNGAPAKFDIRAWS-PDH-TKMG-KGITLSNEEFQTMVDAFK 77 (79)
T ss_dssp EEEEEEEEETTCCCEEEEEEEC-TTS-SCBC-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCCccccccC-ccc-cccc-CccccCHHHHHHHHHHHc
Confidence 4677888888765 89999984 332 3566 999999999999998775
No 5
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=95.81 E-value=0.033 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=35.0
Q ss_pred eeEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973 54 MRFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD 102 (111)
Q Consensus 54 ~rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~ 102 (111)
.+-+..-.|.|+ +-.|||.|= .|- .+=| |||+||.+|...|++.+.
T Consensus 26 ~KELNlVSWNg~~pKyDIR~Ws-pdh-~kMG-KGITLT~eE~~~L~~~L~ 72 (82)
T 2l3a_A 26 TKEINRVSFNGAPAKFDIRAWS-PDH-TKMG-KGITLSNEEFQTMVDAFK 72 (82)
T ss_dssp EEEEEEEEESSSCEEEEEEEEC-STT-CCCC-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEeECCCCCCccccccC-cch-hhcc-CcccccHHHHHHHHHHHH
Confidence 567777888876 489999993 322 2334 999999999999998764
No 6
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=92.48 E-value=0.014 Score=39.36 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=33.0
Q ss_pred eEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHH
Q psy14973 55 RFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 55 rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~ 103 (111)
+-+..-.|.|+ +-.|||.|= .|- .+=| |||+||.+|...|++.+..
T Consensus 25 KELNlVSWNg~~pKyDIR~Ws-pdh-~kMG-KGITLT~eE~~~L~~~Ln~ 71 (80)
T 2ltd_A 25 KELNRVSWNDAEPKYDIRTWS-PDH-EKMG-KGITLSEEEFGVLLKELGN 71 (80)
Confidence 44566667765 489999994 222 2334 9999999999999887653
No 7
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=73.11 E-value=4.5 Score=27.09 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.0
Q ss_pred eEEEEeeeCCceeEEeEEEEecCCee
Q psy14973 55 RFVKVDEFRGRPLISIREYYEKNGQL 80 (111)
Q Consensus 55 rrVtV~~FKG~~~VdIREyYekdGe~ 80 (111)
..|.+=++++-.-+.+|+||+.+|+.
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~~~ 133 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDGKS 133 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCSBC
T ss_pred cEEEEEEEECCEEEEEEEEECCCCCc
Confidence 35778889999999999999998863
No 8
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=58.71 E-value=3.3 Score=33.83 Aligned_cols=14 Identities=36% Similarity=0.916 Sum_probs=12.8
Q ss_pred ceeeeCHHHHHHHH
Q psy14973 85 KGISLSATQWRKLL 98 (111)
Q Consensus 85 KGISLs~eqw~~Lk 98 (111)
-||+||.+||+.|.
T Consensus 23 AGI~lT~~qW~~i~ 36 (324)
T 3trk_A 23 AGIKLNDRQWSQII 36 (324)
T ss_dssp TTCCCCHHHHHHHC
T ss_pred cCccccHHHHHHhh
Confidence 69999999999994
No 9
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=45.95 E-value=22 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=22.2
Q ss_pred CCCeeEEeC--CeeEEEEeee-CCceeEEeEEEEecCCeec
Q psy14973 44 GPAGSWCLE--GMRFVKVDEF-RGRPLISIREYYEKNGQLL 81 (111)
Q Consensus 44 ~~~~~~~Ls--~~rrVtV~~F-KG~~~VdIREyYekdGe~k 81 (111)
+....+-+. +...+++|-| .|-+.||| |||..|++-.
T Consensus 42 ~~g~l~~~~~~~~~~~~~r~~~~glv~~~~-~~~~~d~~~~ 81 (364)
T 2qfm_A 42 DHGYLATYTNKNGSFANLRIYPHGLVLLDL-QSYDGDAQGK 81 (364)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTSEEEEEE-EEC-------
T ss_pred CCceEEEEecCCCcEEEEEeeccceEEEeh-hhhcccccch
Confidence 334444443 4688999999 69999999 6787776654
No 10
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=41.23 E-value=11 Score=30.07 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=22.7
Q ss_pred eeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973 87 ISLSATQWRKLLTLQDSVNSELDKY 111 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai~k~ 111 (111)
-||+++++..|.+.+..|+.+++.|
T Consensus 274 ~sl~p~el~~lv~~ir~i~~a~~~~ 298 (298)
T 3fs2_A 274 NMVPIDKMPALLEKLMAFDRIAKAL 298 (298)
T ss_dssp GCEEGGGHHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999865
No 11
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=40.85 E-value=9.2 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.860 Sum_probs=13.2
Q ss_pred ceeeeCHHHHHHHHH
Q psy14973 85 KGISLSATQWRKLLT 99 (111)
Q Consensus 85 KGISLs~eqw~~Lk~ 99 (111)
-||+||.+||+.|.-
T Consensus 28 Agi~lt~~qw~~~~p 42 (670)
T 4gua_A 28 AGIVLTGCQWSELFP 42 (670)
T ss_dssp TTCCCCHHHHHHHCH
T ss_pred cCccccHHHHHHHhH
Confidence 699999999999853
No 12
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=40.08 E-value=20 Score=25.62 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=20.8
Q ss_pred ecCCeec-cccceeeeCHHHHHHHHHhH
Q psy14973 75 EKNGQLL-PGKKGISLSATQWRKLLTLQ 101 (111)
Q Consensus 75 ekdGe~k-PgKKGISLs~eqw~~Lk~~i 101 (111)
++||+.+ -..+-|.||+||-+.|+++.
T Consensus 93 e~dG~~~~~~~~~viLs~eQa~~lreq~ 120 (123)
T 2g3r_A 93 EKEGQRKWYKRMAVILSLEQGNRLREQY 120 (123)
T ss_dssp EETTEEEEEEGGGEEBCHHHHHTTHHHH
T ss_pred EeCCcEEEEEeeeEEeCHHHHHHHHHHh
Confidence 6677543 24589999999999998764
No 13
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=36.78 E-value=16 Score=24.88 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.1
Q ss_pred ccceeeeCHHHHHHHHHhHHH
Q psy14973 83 GKKGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 83 gKKGISLs~eqw~~Lk~~i~~ 103 (111)
+-|||.||.+|=.+|++...+
T Consensus 12 ~~~~L~LTd~Qk~qir~L~~~ 32 (108)
T 3o39_A 12 SFKDLNLTDAQKQQIREIMKG 32 (108)
T ss_dssp -CCCSCCCHHHHHHHHHHHHT
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999877654
No 14
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=32.59 E-value=9.6 Score=31.17 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=11.7
Q ss_pred ceeeeCHHHHHHH
Q psy14973 85 KGISLSATQWRKL 97 (111)
Q Consensus 85 KGISLs~eqw~~L 97 (111)
-||+||.+||+.|
T Consensus 22 Agi~lt~~qw~~~ 34 (320)
T 2hwk_A 22 AGIDMTTEQWNTV 34 (320)
T ss_dssp TTCCCCHHHHTTS
T ss_pred cCccccHHHhccc
Confidence 6999999999984
No 15
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=30.86 E-value=55 Score=23.17 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=21.9
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
-|-||..+|+.|+..+..+.+.+..
T Consensus 33 AiELTe~E~~~f~~Ll~qL~~~~~~ 57 (122)
T 2nvn_A 33 AVELTAAEMADFCRLVQQLAETIAA 57 (122)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred heeeCHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999887754
No 16
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=30.51 E-value=1.7e+02 Score=22.56 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=32.3
Q ss_pred eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 66 PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 66 ~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
+|+.+---..++|-..- ++.|+.++-+.|.+.++.|.+.+++
T Consensus 273 v~~s~P~~~g~~Gv~~v---~l~L~~~E~~~l~~s~~~l~~~~~~ 314 (321)
T 3p7m_A 273 LFVGVPTEISANGVRPI---EVEISDKEREQLQVSINAIKDLNKA 314 (321)
T ss_dssp EEEEEEEEEETTEEEEC---CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcCCEEEEe---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36666655577776665 7899999999999999888777654
No 17
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.14 E-value=27 Score=20.97 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceeEEeEEEEecCCeeccccceeeeCHHHHHH
Q psy14973 65 RPLISIREYYEKNGQLLPGKKGISLSATQWRK 96 (111)
Q Consensus 65 ~~~VdIREyYekdGe~kPgKKGISLs~eqw~~ 96 (111)
.++||+|+-.+=...-.||. |.++.+++..
T Consensus 2 ~~liDvR~~~e~~~ghIpgA--~~ip~~~l~~ 31 (85)
T 2jtq_A 2 EHWIDVRVPEQYQQEHVQGA--INIPLKEVKE 31 (85)
T ss_dssp EEEEECSCHHHHTTEEETTC--EECCHHHHHH
T ss_pred CEEEECCCHHHHHhCCCCCC--EEcCHHHHHH
Confidence 36899998654445678885 7777766554
No 18
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=29.93 E-value=1.9e+02 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=33.4
Q ss_pred eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973 66 PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY 111 (111)
Q Consensus 66 ~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~ 111 (111)
+|+.+.--..++|-+.- -++.|+.++-+.|.+.++.|.+.+++|
T Consensus 271 ~~~s~P~~~g~~Gv~~v--~~l~L~~~E~~~l~~s~~~l~~~~~~~ 314 (315)
T 3tl2_A 271 LYLGVPVILGGNGIEKI--IELELLADEKEALDRSVESVRNVMKVL 314 (315)
T ss_dssp EEEEEEEEEETTEEEEE--CCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEEEeCCEEEEE--cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444467776654 258899999999999999999998865
No 19
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=29.88 E-value=79 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=21.6
Q ss_pred eEEEEeeeCCceeEEeEEEEecCCee
Q psy14973 55 RFVKVDEFRGRPLISIREYYEKNGQL 80 (111)
Q Consensus 55 rrVtV~~FKG~~~VdIREyYekdGe~ 80 (111)
..|.|-+|++-.-+.+|+||+.+++.
T Consensus 91 ~~~~v~~v~dGkI~~~~~y~~~~~~~ 116 (128)
T 3en8_A 91 YTVSIMEFRNGKVVHETQYFSDPFEA 116 (128)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCC
T ss_pred EEEEEEEEcCCEEEEEEEeCCCCCCC
Confidence 55788889999999999999876653
No 20
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=29.05 E-value=22 Score=24.33 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=15.2
Q ss_pred cccee-eeCHHHHHHHHHhH
Q psy14973 83 GKKGI-SLSATQWRKLLTLQ 101 (111)
Q Consensus 83 gKKGI-SLs~eqw~~Lk~~i 101 (111)
-.-|| .||.++|+.+.-.-
T Consensus 35 ~~egI~eLTe~HW~vI~flR 54 (105)
T 3or1_C 35 GSEGIGAGSADHQKIIDFLQ 54 (105)
T ss_dssp GGGTCSSCCHHHHHHHHHHH
T ss_pred HHCCCccCCHHHHHHHHHHH
Confidence 46799 99999999876443
No 21
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=28.07 E-value=25 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=22.2
Q ss_pred eeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 87 ISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
-||+++++..|.+.+..|+.++..
T Consensus 255 ~sl~p~el~~lv~~i~~i~~~lg~ 278 (285)
T 3sz8_A 255 SALPLHQLEGLLSQMKAIDDLVKR 278 (285)
T ss_dssp CCEEGGGHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999999999875
No 22
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=28.03 E-value=25 Score=24.56 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.5
Q ss_pred ceeeeCHHHHHHHHHh
Q psy14973 85 KGISLSATQWRKLLTL 100 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~ 100 (111)
-||.||.++|+.+.-.
T Consensus 42 egIeLTe~HW~VI~fl 57 (115)
T 1sau_A 42 QPIELTEEHWKIIRYL 57 (115)
T ss_dssp SCCCCCHHHHHHHHHH
T ss_pred CCceECHHHHHHHHHH
Confidence 7999999999987643
No 23
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=27.76 E-value=44 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.9
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
--||+++||..|.+.+..|..|+-
T Consensus 237 ~~Sl~P~ef~~lv~~ir~i~~alG 260 (350)
T 3g8r_A 237 NYSANPEQVRRWLAAAARALAMLG 260 (350)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999874
No 24
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=26.98 E-value=26 Score=27.68 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=21.8
Q ss_pred eeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 87 ISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
-||+++++..|.+.+..|+.++..
T Consensus 256 ~sl~p~el~~lv~~ir~i~~alg~ 279 (288)
T 3tml_A 256 NAVPLNRMGALLETLVTLDQAVKR 279 (288)
T ss_dssp GCEEGGGHHHHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999999999864
No 25
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=26.62 E-value=42 Score=27.13 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=26.6
Q ss_pred EEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 73 YYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 73 yYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
+|.-|-.+.=.----||+++||..|.+.+..|..++-
T Consensus 236 H~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG 272 (349)
T 2wqp_A 236 HFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARG 272 (349)
T ss_dssp EBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhC
Confidence 5544433321124679999999999999999998874
No 26
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=26.19 E-value=38 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.4
Q ss_pred ceeeeCHHHHHHHHHhHHH
Q psy14973 85 KGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~~ 103 (111)
-|..++.+||.+|.+.+.+
T Consensus 203 tG~~~~~~~~~~i~~~~~~ 221 (420)
T 4h51_A 203 TGVDPSQEQWNEIASLMLA 221 (420)
T ss_dssp TCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 3999999999999987754
No 27
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=26.18 E-value=66 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=18.0
Q ss_pred CHHHHHHHHHhHHHHHHHhh
Q psy14973 90 SATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 90 s~eqw~~Lk~~i~~Id~ai~ 109 (111)
+|.||..+....++|+++|.
T Consensus 37 ~pqqYQ~~q~q~~A~eaal~ 56 (66)
T 1zw0_A 37 DAKQYQVWQRESKALESAIA 56 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999875
No 28
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=25.78 E-value=29 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=14.1
Q ss_pred cccee-eeCHHHHHHHHH
Q psy14973 83 GKKGI-SLSATQWRKLLT 99 (111)
Q Consensus 83 gKKGI-SLs~eqw~~Lk~ 99 (111)
-.-|| .||.++|+.+.-
T Consensus 41 ~~egI~eLTe~HW~VI~f 58 (111)
T 1ji8_A 41 ELEGIQKMTEEHWKLVKY 58 (111)
T ss_dssp HHTCCSSCCHHHHHHHHH
T ss_pred hcCCchhcCHHHHHHHHH
Confidence 45799 999999998753
No 29
>2bt9_A Lectin; sugar recognition, beta-propeller; HET: MFU; 0.94A {Ralstonia solanacearum} PDB: 2bs5_A* 2bs6_A* 3zw0_A* 3zw1_B* 3zw2_A* 3zwe_A* 3zzv_A* 3zw0_B* 3zw1_A*
Probab=25.64 E-value=66 Score=21.45 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=15.4
Q ss_pred EEEEeeeCCceeEEeEEEEecCCe
Q psy14973 56 FVKVDEFRGRPLISIREYYEKNGQ 79 (111)
Q Consensus 56 rVtV~~FKG~~~VdIREyYekdGe 79 (111)
.+-.-.|.+. .+||-||..|+.
T Consensus 4 ~lAAt~w~~~--~~IRVYy~~~~~ 25 (90)
T 2bt9_A 4 QTAATSWGTV--PSIRVYTANNGK 25 (90)
T ss_dssp EEEEEEETTT--TEEEEEEEETTE
T ss_pred cEEEEecCCC--CeEEEEEcCCCc
Confidence 3566778777 599999944443
No 30
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=25.35 E-value=57 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=20.8
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~ 109 (111)
-|-||..+|+.|+..+..+.+.+.
T Consensus 31 AiELTe~E~~~f~~Ll~qL~~~~~ 54 (127)
T 2it9_A 31 AIELDKSEWKILVEVVMELCDQYK 54 (127)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999998887765
No 31
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=24.96 E-value=64 Score=22.47 Aligned_cols=43 Identities=7% Similarity=0.245 Sum_probs=28.0
Q ss_pred eCCeeEEEEeeeC-------------CceeEEeEEEEecCCeeccccceeeeCHHHHHH
Q psy14973 51 LEGMRFVKVDEFR-------------GRPLISIREYYEKNGQLLPGKKGISLSATQWRK 96 (111)
Q Consensus 51 Ls~~rrVtV~~FK-------------G~~~VdIREyYekdGe~kPgKKGISLs~eqw~~ 96 (111)
+..-+.|++.+.. .-++||+|+ ++=.+.-.||. |.++..++..
T Consensus 27 ~~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGA--iniP~~~l~~ 82 (169)
T 3f4a_A 27 ITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDG--WHYAYSRLKQ 82 (169)
T ss_dssp CCSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTC--EECCHHHHHH
T ss_pred cCCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCC--EECCHHHhhc
Confidence 3456667766542 257999998 65556677885 6677666443
No 32
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=24.67 E-value=54 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.5
Q ss_pred ceeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 85 KGISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
---||+++++..|.+.+..|+.++..
T Consensus 322 ~~~sL~p~e~~~lv~~ir~i~~alg~ 347 (350)
T 1vr6_A 322 GKQSLDFELFKELVQEMKKLADALGV 347 (350)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCc
Confidence 34689999999999999999998753
No 33
>3c8i_A Putative membrane protein; STRU genomics, PSI, MCSG, protein structure initiative; 1.95A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=24.56 E-value=27 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=18.6
Q ss_pred eeeCHHHHHHHHHhHHHHHHHh
Q psy14973 87 ISLSATQWRKLLTLQDSVNSEL 108 (111)
Q Consensus 87 ISLs~eqw~~Lk~~i~~Id~ai 108 (111)
=+++.+||+.|..+++.+++.-
T Consensus 111 ~aIp~~eW~~L~~~~~r~~eV~ 132 (141)
T 3c8i_A 111 STIPSEQWTTLSKNLNKLDQVR 132 (141)
T ss_dssp HHSCHHHHHHHHHTGGGHHHHH
T ss_pred HhCCHHHHHHHHHHhhhHHHHH
Confidence 3688999999999999888753
No 34
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=24.46 E-value=66 Score=18.10 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=16.2
Q ss_pred ceeeeCHHHHHHHHHhHHH
Q psy14973 85 KGISLSATQWRKLLTLQDS 103 (111)
Q Consensus 85 KGISLs~eqw~~Lk~~i~~ 103 (111)
-.|-||++++..|.+.+..
T Consensus 18 i~vRlt~eE~~~l~~~A~~ 36 (51)
T 2ba3_A 18 RTLRFSPVEDETIRKKAED 36 (51)
T ss_dssp EEEEECHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH
Confidence 4688999999999988765
No 35
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=23.45 E-value=14 Score=33.05 Aligned_cols=25 Identities=12% Similarity=0.422 Sum_probs=18.3
Q ss_pred CceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973 64 GRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD 102 (111)
Q Consensus 64 G~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~ 102 (111)
|.+|+|||-||.+| .+|.+|.+.+.
T Consensus 604 g~tF~~IRs~Yk~D--------------P~w~kv~a~l~ 628 (695)
T 4fus_A 604 ESTFLSMRSFYLDD--------------PMFKQVEDALN 628 (695)
T ss_dssp TCBTTTTCGGGGGC--------------HHHHHHHHHHH
T ss_pred CCeeeechhhhccC--------------CcHHHHHHHHh
Confidence 57899999999765 46766665543
No 36
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.11 E-value=33 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=14.7
Q ss_pred ccceeeeCHHHHHHHHHh
Q psy14973 83 GKKGISLSATQWRKLLTL 100 (111)
Q Consensus 83 gKKGISLs~eqw~~Lk~~ 100 (111)
-.-||.||.+.|+.+.-.
T Consensus 56 ~~EgIeLTe~HWeVI~fl 73 (132)
T 1yx3_A 56 KQDNLELTEEHWDIINFL 73 (132)
T ss_dssp HTTTCCCCHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHH
Confidence 568999999999987543
No 37
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.81 E-value=82 Score=20.38 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=18.8
Q ss_pred eCHHHHHHHHHhHHHHHHHhh
Q psy14973 89 LSATQWRKLLTLQDSVNSELD 109 (111)
Q Consensus 89 Ls~eqw~~Lk~~i~~Id~ai~ 109 (111)
.+|.||..+....++|+++|.
T Consensus 42 ~~pqqyQ~~~qQ~~AieAal~ 62 (70)
T 2uwj_E 42 ACPERFQFLQQQARALEGGLG 62 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999875
No 38
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=22.24 E-value=37 Score=25.53 Aligned_cols=25 Identities=12% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEecCCeeccc---cceeeeCHHHHHH
Q psy14973 72 EYYEKNGQLLPG---KKGISLSATQWRK 96 (111)
Q Consensus 72 EyYekdGe~kPg---KKGISLs~eqw~~ 96 (111)
-||+.+|+..|. .+.|++++++-..
T Consensus 193 rffd~~G~~V~~~~~~r~i~i~l~~i~~ 220 (266)
T 2gnp_A 193 RFFDSKGKEVYENLQERTIAISLEDLKN 220 (266)
T ss_dssp EEECTTSCCCCHHHHTTBCBCCHHHHTT
T ss_pred hhhccCCCCCCCccccceecCCHHHHcC
Confidence 477999999996 7999999987554
No 39
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=21.89 E-value=74 Score=24.62 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.9
Q ss_pred ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973 75 EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY 111 (111)
Q Consensus 75 ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~ 111 (111)
.++|- . ---+.|+.+|-+.|.+.++.|.+.|++|
T Consensus 259 g~~Gv-e--i~~l~L~~~E~~~l~~s~~~lk~~i~~l 292 (294)
T 2x0j_A 259 GKNGA-E--VADIKLSDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp ETTEE-E--ECCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eCCEE-E--EeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 56663 1 1226899999999999999999999876
No 40
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=20.89 E-value=40 Score=26.10 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=21.9
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
--||+++|+..|.+.+..|+.++..
T Consensus 235 ~qsl~p~~l~~l~~~i~~~~~~~g~ 259 (267)
T 2nwr_A 235 STQLPLSQLEGIIEAILEIREVASK 259 (267)
T ss_dssp TTCEEGGGHHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999864
No 41
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=20.73 E-value=39 Score=26.37 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=22.1
Q ss_pred eeeeCHHHHHHHHHhHHHHHHHhhh
Q psy14973 86 GISLSATQWRKLLTLQDSVNSELDK 110 (111)
Q Consensus 86 GISLs~eqw~~Lk~~i~~Id~ai~k 110 (111)
--||+++|+..|.+.+..|+.++..
T Consensus 252 ~~sl~p~~l~~lv~~ir~i~~a~g~ 276 (292)
T 1o60_A 252 PSALPLSALEGFVSQMKAIDDLVKS 276 (292)
T ss_dssp TTCEEGGGHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999864
Done!