RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14973
         (111 letters)



>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor,
           ssDNA binding, nuclear protein; 1.74A {Homo sapiens}
           SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
          Length = 66

 Score = 75.2 bits (185), Expect = 9e-20
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 49  WCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSE 107
           + +  MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L      ++  
Sbjct: 3   FQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDA 62

Query: 108 LDK 110
           + K
Sbjct: 63  VRK 65


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 0.79
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 19/78 (24%)

Query: 17  GTRG----PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIRE 72
           G R     P     P+  +   + ++ E  G P  S     M  +            +++
Sbjct: 307 GVRCYEAYPNTSLPPSILED--SLENNE--GVP--SP----MLSI-----SNLTQEQVQD 351

Query: 73  YYEKNGQLLPGKKGISLS 90
           Y  K    LP  K + +S
Sbjct: 352 YVNKTNSHLPAGKQVEIS 369


>3juw_A Probable GNAT-family acetyltransferase; structural genomics,
           APC60242, acetyltransferas protein structure initiative;
           HET: MSE; 2.11A {Bordetella pertussis}
          Length = 175

 Score = 25.3 bits (56), Expect = 4.3
 Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 4/26 (15%)

Query: 53  GMRFVKVDEFRGRPLISIREYYEKNG 78
           G R      F G   +      E+ G
Sbjct: 154 GFRGYSDVAFDGAAHL----LLERAG 175


>2o9x_A Reductase, assembly protein; SAD, RAMP, helical protein, structural
           genomics, PSI, protei structure initiative; 3.40A
           {Archaeoglobus fulgidus} SCOP: a.184.1.1
          Length = 181

 Score = 24.4 bits (53), Expect = 9.3
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 7/34 (20%)

Query: 45  PAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNG 78
           P  S+  EG          G+  +   E Y K G
Sbjct: 88  PYQSYFEEG-------SVYGKASLRAAELYSKYG 114


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,629,848
Number of extensions: 86409
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)