RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14973
         (111 letters)



>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 76.6 bits (189), Expect = 9e-21
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 49  WCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSE 107
           + +  MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L      ++  
Sbjct: 3   FQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDA 62

Query: 108 LDK 110
           + K
Sbjct: 63  VRK 65


>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 344

 Score = 25.5 bits (55), Expect = 1.8
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 23/76 (30%)

Query: 55  RFVKVDEFRGRPLISIREYYEK---------NGQLLPG----------KKGISLSATQWR 95
            F+  +EF+ +    + E  ++            L+PG          K G  +    + 
Sbjct: 271 FFMGKEEFKRK----VDELLDEIKNSEPAEGFEILIPGEIEERNKMKRKDGFEIDKNLYN 326

Query: 96  KLLTLQDSVNSELDKY 111
           +L  + + +   ++ Y
Sbjct: 327 QLKEICNELGLNIEDY 342


>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK)
           {Escherichia coli [TaxId: 562]}
          Length = 332

 Score = 24.7 bits (53), Expect = 3.1
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 17/92 (18%)

Query: 26  QPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGR------PLISIREYYEKNGQ 79
              AS       + +  G       +E  + +       +       + S     E    
Sbjct: 241 SDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAI 300

Query: 80  LLPG-----------KKGISLSATQWRKLLTL 100
            LPG           + GI++  + W K+  L
Sbjct: 301 RLPGHEFTTLLAENRRNGITVDDSVWAKIQAL 332


>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli
          [TaxId: 562]}
          Length = 97

 Score = 23.6 bits (51), Expect = 3.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 37 KDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIRE 72
            GE   G A ++ L G R +++ E++G P+  +++
Sbjct: 25 PKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQ 60


>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
           spirochete (Borrelia burgdorferi), different strains
           [TaxId: 139]}
          Length = 162

 Score = 23.5 bits (51), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 76  KNGQLLPGKKGISLSATQWRKLLTLQDS 103
            NG L+ G   IS   T+  K+  ++DS
Sbjct: 53  HNGSLMSGAYLISTLITK--KISAIKDS 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,121
Number of extensions: 16649
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)