BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14977
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 13/97 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
VR +++ R++ A+ G G ++GG+ + GVG+Y+S VE GS+AE+ GLR GD IL+VN
Sbjct: 9 VRLVSLRRAK-AHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKS 66
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
++H EA+K LK +++L ++V S
Sbjct: 67 LARVTHAEAVK-----------ALKGSKKLVLSVYSA 92
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 379 QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTV 438
+ LG IRGG E+ +GI+++ V+ S+AE+ GL V IL +DK V
Sbjct: 21 EGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGD----------QILRVNDKSLARV 70
Query: 439 ISFSHEQTSPSMYGVQATLLS 459
+H + ++ G + +LS
Sbjct: 71 ---THAEAVKALKGSKKLVLS 88
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 12/80 (15%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFF 278
G+ ++GGA G+G+YI+ V+ GS AE +GL+ GD IL+VNG F I H+EA++
Sbjct: 34 LGLTIRGGAEY-GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVR---- 88
Query: 279 EGYKEGQMLKSNRELSMTVR 298
+LKS+R L +TV+
Sbjct: 89 -------LLKSSRHLILTVK 101
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFL-I 427
+KV L + G+SLGL IRGG EY LGI+ITGVD S AE +GL V L + FL I
Sbjct: 22 KKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNI 81
Query: 428 LSD 430
L D
Sbjct: 82 LHD 84
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 14/101 (13%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
++ Q R + + + A GF I +GG + +G++IS+V S A RAGL+ GD +L
Sbjct: 10 ELTQFLPRIVTLKKPPGAQLGFNI--RGGKASQ-LGIFISKVIPDSDAHRAGLQEGDQVL 66
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
VN + F I H +A+ ++LK+ RE+SM VR
Sbjct: 67 AVNDVDFQDIEHSKAV-----------EILKTAREISMRVR 96
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 25/43 (58%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
R V L PG LG IRGG LGIFI+ V DS A RAGL
Sbjct: 17 RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGL 59
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 12/80 (15%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFF 278
G V+GG+ + G+G+++S+VEEGS AERAGL GD I +VNG+ + A+K
Sbjct: 24 LGFSVRGGSEH-GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVK---- 78
Query: 279 EGYKEGQMLKSNRELSMTVR 298
+L S+ L M VR
Sbjct: 79 -------VLTSSSRLHMMVR 91
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
D + V + P LG +RGG E+ LGIF++ V++ S AERAGL V
Sbjct: 9 DIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCV 56
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 218 GFGICVKGGANNP-----GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
G GI + GG + G++ISRV E A RAG+R GD +L+VNG+ G H EA
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA 74
Query: 273 LK 274
++
Sbjct: 75 VE 76
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 106
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 95
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 95
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 95
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 55 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 96
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 218 GFGICVKGGANNP-----GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
G GI + GG + G++ISRV E A RAG+R GD +L+VNG+ G H EA
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA 86
Query: 273 LK 274
++
Sbjct: 87 VE 88
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 87
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K
Sbjct: 44 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK 85
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 11/65 (16%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRE 292
G++IS V+ GS++ GL GD I++VNG+ F+ + H+EA+ +LKS+R
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAV-----------NVLKSSRS 90
Query: 293 LSMTV 297
L++++
Sbjct: 91 LTISI 95
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 14/84 (16%)
Query: 215 ANHGFGICVKGGA-NNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
+ G G + G PG+ +IS V+ GS++ GL GD I++VNG+ F+ + H+EA+
Sbjct: 11 GSRGLGCSISSGPIQKPGI--FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAV 68
Query: 274 KMCFFEGYKEGQMLKSNRELSMTV 297
+LKS+R L++++
Sbjct: 69 -----------NVLKSSRSLTISI 81
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 204 VRTINMNRSQDANHGFGICVKGGAN---NPGVGVYISRVEEGSIAERAG-LRPGDSILQV 259
+RT+ + ++ N FG ++GGA+ N V I+ V G A+R G ++PGD +L V
Sbjct: 2 MRTVEVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 260 NGIPFTGISHEEA---LKMC 276
+GI G +H EA LK C
Sbjct: 61 DGIRLLGTTHAEAMSILKQC 80
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
G G+ V+GG G G++IS + +G A+ GL+ GD I+++NG + +HEE + +
Sbjct: 97 GLGLSVRGGLEF-GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINL 153
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 362 RSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
RS K +++V L+ + LGL +RGG+E+ G+FI+ + K A+ GL V
Sbjct: 81 RSRK--LKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQV 130
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 216 NHGFGICVKGGA--NNPGVGVYISRVEEGSIAER-AGLRPGDSILQVNGIPFTGISHEEA 272
+ G G + GG N+P +YISRV G +A+R GL+ GD +L VNG+ G HE+A
Sbjct: 15 DEGLGFNIMGGKEQNSP---IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKA 71
Query: 273 LKMC 276
+++
Sbjct: 72 VELL 75
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 205 RTINMNRSQDANHGFGICVKGGAN---NPGVGVYISRVEEGSIAERAG-LRPGDSILQVN 260
RT+ + ++ N FG ++GGA+ N V I+ V G A+R G ++PGD +L V+
Sbjct: 106 RTVEVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD 164
Query: 261 GIPFTGISHEEA---LKMC 276
GI G +H EA LK C
Sbjct: 165 GIRLLGTTHAEAMSILKQC 183
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G+ V GG + G +S + +G IA R+ L GD I VNGI H+E + +
Sbjct: 21 LGLTVSGGIDKDG-KPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISL 77
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM R +H GI + G +N+ G G +YI + +G ++A + PGD +LQVN +
Sbjct: 6 TLNMER----HHFLGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVN 61
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 62 FENMSNDDAVRV 73
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
Q ++GFG+ V G +NP V++ V+E A RAG++ GD I++VNG T +H E
Sbjct: 14 QKDDNGFGLTVSG--DNP---VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEV 68
Query: 273 LKM 275
+K+
Sbjct: 69 VKL 71
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM R +H GI + G +N+ G G +YI + +G ++A + PGD +LQVN +
Sbjct: 3 TLNMER----HHFLGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVN 58
Query: 264 FTGISHEEALKMC 276
F +S+++A+++
Sbjct: 59 FENMSNDDAVRVL 71
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+ + GG + VG++++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 14 GLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 64
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 373 LNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
+ G S+GL + GG ++GIF+ GV +DS A + GL
Sbjct: 5 VKFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEGL 41
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAER-AGLRPGDSILQVNG 261
P+R + + ++ + G GI + GG + GV + IS + G A+R GL GD+IL VNG
Sbjct: 2 PIRKVLL--LKEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNG 58
Query: 262 IPFTGISHEEALKM 275
+ H+EA+ +
Sbjct: 59 VNLRDTKHKEAVTI 72
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+RKV L E + LG+ I GG E+ + I I+ + A+R G L
Sbjct: 3 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGL 47
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAER-AGLRPGDSILQVNG 261
P+R + + ++ + G GI + GG + GV + IS + G A+R GL GD+IL VNG
Sbjct: 9 PIRKVLL--LKEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNG 65
Query: 262 IPFTGISHEEALKM 275
+ H+EA+ +
Sbjct: 66 VNLRDTKHKEAVTI 79
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+RKV L E + LG+ I GG E+ + I I+ + A+R G L
Sbjct: 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGL 54
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+ + GG + VG++++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 22 GLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 72
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 373 LNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
+ G S+GL + GG ++GIF+ GV +DS A + GL
Sbjct: 13 VKFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEGL 49
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAER-AGLRPGDSILQVNGIPFTGISHEE 271
++ + G GI + GG + GV + IS + G A+R GL GD+IL VNG+ H+E
Sbjct: 35 KEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKE 93
Query: 272 ALKM 275
A+ +
Sbjct: 94 AVTI 97
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+RKV L E + LG+ I GG E+ + I I+ + A+R G L
Sbjct: 28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGL 72
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+ + GG + VG++++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 15 GLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 65
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 378 GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
G S+GL + GG ++GIF+ GV +DS A + GL
Sbjct: 11 GDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEGL 42
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+ + GG + VG++++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 42 GLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 92
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 378 GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
G S+GL + GG ++GIF+ GV +DS A + GL
Sbjct: 38 GDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEGL 69
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+ + GG + VG++++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 17 GLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 67
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 378 GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
G S+GL + GG ++GIF+ GV +DS A + GL
Sbjct: 13 GDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEGL 44
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G G+ + GG + P + I V EEG+ A L GD IL+VNG+ SHEEA+
Sbjct: 29 GLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAI 85
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
+++RV E S A+ AGL PGD+I VNG+ GI H E + +
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDII 81
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 200 DQLP--VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIA--ERAGLRPGDS 255
DQLP V I+M + + GF + V+ ++N V + V I+ R + PGD
Sbjct: 10 DQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDR 69
Query: 256 ILQVNGIPFTGISHEEA 272
IL++NG P + EE
Sbjct: 70 ILEINGTPVRTLRVEEV 86
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
G +C + + +G+YIS ++ SIA + G +R GD I+Q+NGI + EEA+ +
Sbjct: 35 GLTVCYRTDDEDD-IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALL 91
Query: 277 FFEGYKEGQMLKSNRELSM 295
E K +L + EL +
Sbjct: 92 TSEENKNFSLLIARPELQL 110
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
+++RV E S A+ AGL PGD+I VNG+ GI H E + +
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDII 81
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 218 GFGICVKGGANNP-----GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEE 271
G G + GG + G+++SR+ EG A RAG L+ GD +L +NG+ T H+
Sbjct: 19 GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH 78
Query: 272 ALKM 275
A+ +
Sbjct: 79 AVSL 82
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
++ RV E S A+ AGL PGD+I VNG+ GI H E + +
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDI 80
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
G +I RVE GS AE A LR GD +++VNG+ G +H + ++
Sbjct: 26 GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQ 67
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 213 QDANHGFGICVKGGANNPGVG----VYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGI 267
+ N G G + GG +NP +G ++I+++ G+ AE LR D IL+VN + + +
Sbjct: 16 ERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEV 75
Query: 268 SHEEALK 274
SH +A++
Sbjct: 76 SHSKAVE 82
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 202 LPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVN 260
+PVR + + + + G GI +KGG N + + IS++ G A+++ LR GD+IL VN
Sbjct: 2 MPVRRVRVVKQEAG--GLGISIKGGRENR-MPILISKIFPGLAADQSRALRLGDAILSVN 58
Query: 261 GIPFTGISHEEALK 274
G +H++A++
Sbjct: 59 GTDLRQATHDQAVQ 72
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 218 GFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + V G+Y+SR++E A G L+ GD IL VNG + H++A
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 273 LKMCFFEGY 281
+ + GY
Sbjct: 79 VDLFRNAGY 87
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 200 DQLPVRTINMNRS---QDANHGFGICVKGGA-NNPG-VGVYISRVEEGSIAERAG-LRPG 253
D+L R I R+ +D+ G+ V GG + G +G +I++V++GS+A+ G LR G
Sbjct: 17 DRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAG 76
Query: 254 DSILQVNGIPFTGISHEEALKMCF 277
D +L+ NG P G ++EE +
Sbjct: 77 DEVLEWNGKPLPGATNEEVYNIIL 100
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 218 GFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + V G+Y+SR++E A G L+ GD IL VNG + H++A
Sbjct: 21 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 273 LKMCFFEGY 281
+ + GY
Sbjct: 81 VDLFRNAGY 89
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
Q HGFG V G V + V G A +AG++ GD I++VNG T SH E
Sbjct: 15 QKDQHGFGFTVSGDRI-----VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEV 69
Query: 273 LKM 275
+K+
Sbjct: 70 VKL 72
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + G G++IS + G A+ +G LR GD IL VNG+ SHE+A
Sbjct: 319 GLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 372
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 271 EALK 274
A++
Sbjct: 129 AAVE 132
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PGVG-VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD IL VN + + HE+A
Sbjct: 166 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 225
Query: 273 L 273
+
Sbjct: 226 V 226
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 215 ANHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
N G G + GG +NP +G ++I+++ G A + G LR D IL+VN + ++H
Sbjct: 20 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTH 79
Query: 270 EEALK 274
+A++
Sbjct: 80 SKAVE 84
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 212 SQDANHGFGI----CVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGI 267
S N+GF I G ++ V + VEEGS A +AGL+ GD I +NG P G+
Sbjct: 9 SSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGL 68
Query: 268 SHEEALKMCFFEGYKEGQMLKSNRELSMT 296
H E +++ +LKS ++S+T
Sbjct: 69 VHTEVIEL----------LLKSGNKVSIT 87
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282
+ VE+G A AGLR GD I VNG P G+ H E +++ G K
Sbjct: 40 VWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNK 86
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 215 ANHGFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
+ G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++H
Sbjct: 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 270 EEAL 273
EEA+
Sbjct: 71 EEAV 74
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHE 270
+ Q + GI + G G+Y+S+V GSIA +AGL GD +L+ NGI + +
Sbjct: 24 KVQKGSEPLGISIVSGEKG---GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQ 80
Query: 271 EA 272
+A
Sbjct: 81 QA 82
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNP--GVGVYISRV-EEGSIAERAGLRPGDSILQVNG 261
++I + R D G G + GG +P + +Y+ V +G+ +E L+ GD I+ VNG
Sbjct: 27 KSITLERGPD---GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG 83
Query: 262 IPFTGISHEEALKM 275
G++HEEA+ +
Sbjct: 84 QSLEGVTHEEAVAI 97
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R +++ + N+GF + ++ + G I +EEGS AE+AGL GD +L++NG+
Sbjct: 15 RECKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 70
Query: 265 TGISHEEALKM 275
H + +++
Sbjct: 71 DKEEHAQVVEL 81
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 20 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 273 L 273
+
Sbjct: 80 V 80
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
Y+ V+EG +A RAGLR GD +++VNG + H + + M
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM 88
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 10 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 273 L 273
+
Sbjct: 70 V 70
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
++S V G A+RAG+R GD IL+VNG+ G +H++ + +
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
++S V G A+RAG+R GD IL+VNG+ G +H++ + +
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
Y+ V+EG +A RAGLR GD +++VNG + H + + M
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM 88
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
++S V G A+RAG+R GD IL+VNG+ G +H++ + +
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 23 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 273 L 273
+
Sbjct: 83 V 83
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 218 GFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + V G+Y+SR++E A G L+ GD IL VNG + H++A
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 273 LKMCFFEGY 281
+ + GY
Sbjct: 89 VDLFRNAGY 97
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 11 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
Query: 273 L 273
+
Sbjct: 71 V 71
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 194 LTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRP 252
L DI + P R I ++R + G G + GG + G G++IS + G A+ +G LR
Sbjct: 6 LGEEDIPREP-RRIVIHR---GSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRK 59
Query: 253 GDSILQVNGIPFTGISHEEA 272
GD IL VNG+ SHE+A
Sbjct: 60 GDQILSVNGVDLRNASHEQA 79
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R +++ + N+GF + ++ + G I +EEGS AE+AGL GD +L++NG+
Sbjct: 4 RESKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 59
Query: 265 TGISHEEALKM 275
H + +++
Sbjct: 60 DKEEHAQVVEL 70
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
Y+ V+EG +A RAGLR GD +++VNG + H + + M
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM 108
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 219 FGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
GI + G +N G G +YI + +G ++A + PGD +LQVN I F S+++A+++
Sbjct: 13 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + G G+++S + G A+ +G L+ GD IL VNGI G SHE+A
Sbjct: 15 GLGFNIVGGED--GEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQA 68
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 219 FGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
GI + G +N G G +YI + +G ++A + PGD +LQVN I F S+++A+++
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD +L VN + ++HEEA
Sbjct: 21 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 273 L 273
+
Sbjct: 81 V 81
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 219 FGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
GI + G +N G G +YI + +G ++A + PGD +LQVN I F S+++A+++
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R +++ + N+GF + ++ + G I +EEGS AE+AGL GD +L++NG+
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 58
Query: 265 TGISHEEALKM 275
H + +++
Sbjct: 59 DKEEHAQVVEL 69
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISH 269
R DA G GI +KGG N + + IS++ +G A++ L GD+IL VNG + +H
Sbjct: 7 RKADAG-GLGISIKGGRENK-MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 64
Query: 270 EEALK 274
+EA++
Sbjct: 65 DEAVQ 69
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 202 LPVRTINMNR-SQD---ANHGFGICVKGGANNPG----VGVYISRVEEGSIAERAG-LRP 252
P I + R S+D + +G GI + GG PG +G YI+++ G AE+ G L
Sbjct: 11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
Query: 253 GDSILQVNGIPFTGISHEE 271
G +L+ NGIP T ++EE
Sbjct: 71 GMQVLEWNGIPLTSKTYEE 89
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 213 QDANHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGI 267
+ N G G + GG +NP +G ++I+++ G A + G LR D IL+VN +
Sbjct: 8 ERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDV 67
Query: 268 SHEEALK 274
+H +A++
Sbjct: 68 THSKAVE 74
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 194 LTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRP 252
L DI + P R I ++R + G G + GG + G G++IS + G A+ +G LR
Sbjct: 6 LGEEDIPREP-RRIVIHR---GSTGLGFNIIGGED--GEGIFISFILAGGPADLSGELRK 59
Query: 253 GDSILQVNGIPFTGISHEEA 272
GD IL VNG+ SHE+A
Sbjct: 60 GDQILSVNGVDLRNASHEQA 79
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 209 MNRSQDANHGFGICVKGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFT 265
+N +D G+ V GGA++ + +Y+ VE G + R G ++ GD +L V+G+ T
Sbjct: 28 VNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELT 87
Query: 266 GISHEEALKMC 276
+S EA+ +
Sbjct: 88 EVSRSEAVALL 98
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 369 RKVELNIEPGQSLGLMIRGGV---EYNLGIFITGVDKDSVAERAG 410
+ V + +PG+SLG+ + GG E++L I++ V+ V R G
Sbjct: 26 KVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDG 70
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISH 269
R DA G GI +KGG N + + IS++ +G A++ L GD+IL VNG + +H
Sbjct: 7 RKADAG-GLGISIKGGRENK-MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 64
Query: 270 EEALK 274
+EA++
Sbjct: 65 DEAVQ 69
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282
+ VEEG A+ AGL GD I VNG P G+ H E +++ G K
Sbjct: 41 VWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNK 87
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 271 EALK 274
A++
Sbjct: 72 AAVE 75
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 194 LTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRP 252
L DI + P R I ++R + G G + GG G G++IS + G A+ +G LR
Sbjct: 3 LGEEDIPREP-RRIVIHR---GSTGLGFNIVGG--EXGEGIFISFILAGGPADLSGELRK 56
Query: 253 GDSILQVNGIPFTGISHEEA 272
GD IL VNG+ SHE+A
Sbjct: 57 GDQILSVNGVDLRNASHEQA 76
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD IL VN + + HE+A
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISH 269
R DA G GI +KGG N + + IS++ +G A++ L GD+IL VNG + +H
Sbjct: 11 RKADAG-GLGISIKGGRENK-MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 68
Query: 270 EEALK 274
+EA++
Sbjct: 69 DEAVQ 73
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 271 EALK 274
A++
Sbjct: 71 AAVE 74
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 271 EALK 274
A++
Sbjct: 71 AAVE 74
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
VR++ + R + G+G + G A P V +S V GS A+ GLR GD IL VN I
Sbjct: 3 VRSVEVARGR---AGYGFTLSGQA--PCV---LSCVMRGSPADFVGLRAGDQILAVNEIN 54
Query: 264 FTGISHEEALKM 275
SHE+ +K+
Sbjct: 55 VKKASHEDVVKL 66
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
G G+ + GG++ + I V EEG+ + L GD IL+VNGI +H+EA+ +
Sbjct: 16 GLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINV 74
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 232 VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEE 271
+G +I++V++GS+A+ G LR GD +L+ NG P G ++EE
Sbjct: 54 LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEE 94
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
GFG ++GG + +Y+ R+ E AER+G +R GD IL++NG + H A+++
Sbjct: 36 GFGFSLRGG-REYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI 94
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 379 QSLGLMIRGGVEYNLGIFITGVDKDSVAERAG 410
+ G +RGG EYN+ +++ + +D AER+G
Sbjct: 35 KGFGFSLRGGREYNMDLYVLRLAEDGPAERSG 66
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM + + GI + G +N G G +YI + +G ++A + PGD +LQVN +
Sbjct: 10 TLNMEKY----NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 66 FENMSNDDAVRV 77
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 271 EALK 274
A++
Sbjct: 75 AAVE 78
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PGVG-VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD IL VN + + HE+A
Sbjct: 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Query: 273 L 273
+
Sbjct: 172 V 172
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM + + GI + G +N G G +YI + +G ++A + PGD +LQVN +
Sbjct: 10 TLNMEKY----NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 66 FENMSNDDAVRV 77
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 217 HGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
G+G + + PG YI V+ GS A R+GLR D +++VNG G+ H E +
Sbjct: 15 QGYGFNLHSDKSRPGQ--YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVV 69
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 239 VEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282
VE+GS A+ AGLR GD I +NG G+ H + +++ G K
Sbjct: 41 VEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNK 84
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSI 256
DI + P R I ++R + G G + GG G G++IS + G A+ +G LR GD I
Sbjct: 2 DIPREP-RRIVIHR---GSTGLGFNIVGG--EXGEGIFISFILAGGPADLSGELRKGDQI 55
Query: 257 LQVNGIPFTGISHEEA 272
L VNG+ SHE+A
Sbjct: 56 LSVNGVDLRNASHEQA 71
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++ + EG A + G L+ GD +L VN + ++HEEA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 216 NHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 271 EALK 274
A++
Sbjct: 72 AAVE 75
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PGVG-VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD IL VN + + HE+A
Sbjct: 109 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 168
Query: 273 L 273
+
Sbjct: 169 V 169
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM + + GI + G +N G G +YI + +G ++A + PGD +LQVN +
Sbjct: 10 TLNMEKY----NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 66 FENMSNDDAVRV 77
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 215 ANHGFGICVKGGANNPGVG----VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
N G G + GG +NP +G ++I+++ G A + G LR DSIL VN + ++H
Sbjct: 21 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 80
Query: 270 EEALK 274
A++
Sbjct: 81 SAAVE 85
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PGVG-VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ EG A + G L+ GD IL VN + + HE+A
Sbjct: 119 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 178
Query: 273 L 273
+
Sbjct: 179 V 179
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 201 QLPVRTINMNRSQDANHGFGICVK-GGANNP----GVGVYISRVEEGSIAERAGLRPGDS 255
+L + I + +D GF I GG NP G++++RV+ A + L+PGD
Sbjct: 7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDK 65
Query: 256 ILQVNGIPFTGISHEEALKMC 276
I+Q NG F I H +A+ +
Sbjct: 66 IIQANGYSFINIEHGQAVSLL 86
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
GFG + GG N PG +YI + A+ G LR GD ++ V+G P G SH+ +++
Sbjct: 14 GFGFRILGG-NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLM 72
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM + + GI + G +N G G +YI + +G ++A + PGD +LQVN +
Sbjct: 10 TLNMEKY----NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 66 FENMSNDDAVRV 77
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISH 269
R DA G GI +KGG N + + IS++ +G A++ L GD+IL VNG + +H
Sbjct: 84 RKADAG-GLGISIKGGREN-KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 141
Query: 270 EEALKMCFFEGYKEGQMLKSNRELS 294
+EA++ G + +K +E+S
Sbjct: 142 DEAVQALKKTGKEVVLEVKYMKEVS 166
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +YI+++ EG A++ G L+ GD +L VN + HEEA
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 273 L 273
+
Sbjct: 75 V 75
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 218 GFGICVKGGANN---PG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG N PG +Y++++ +G A++ G L+ GD +L VN ++HEEA
Sbjct: 36 GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95
Query: 273 LKM 275
+ +
Sbjct: 96 VAI 98
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVG-VYISRVEEG-SIAERAGLRPGDSILQVNGIP 263
T+NM + + GI + G +N G G +YI + +G ++A + PGD +LQVN +
Sbjct: 10 TLNMEKY----NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 264 FTGISHEEALKM 275
F +S+++A+++
Sbjct: 66 FENMSNDDAVRV 77
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 213 QDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGI 267
+D+ GFGI V GG +NP + IS V G A+ L+ D ++ VNG P +
Sbjct: 22 KDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGL-LQENDRVVMVNGTPMEDV 80
Query: 268 SHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
H A++ Q+ KS + ++ V+ P
Sbjct: 81 LHSFAVQ----------QLRKSGKIAAIVVKRP 103
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 222 CVKGGANNPG---------VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
C++ G N G +G YI VE GS AE+AGL GD +++VNG +H++
Sbjct: 7 CLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQV 66
Query: 273 L 273
+
Sbjct: 67 V 67
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 222 CVKGGANNPG---------VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
C++ G N G +G YI VE GS AE+AGL GD +++VNG +H++
Sbjct: 8 CLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQV 67
Query: 273 L 273
+
Sbjct: 68 V 68
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 222 CVKGGANNPG---------VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
C++ G N G +G YI VE GS AE+AGL GD +++VNG +H++
Sbjct: 8 CLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQV 67
Query: 273 L 273
+
Sbjct: 68 V 68
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 222 CVKGGANNPG---------VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
C++ G N G +G YI VE GS AE+AGL GD +++VNG +H++
Sbjct: 8 CLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQV 67
Query: 273 L 273
+
Sbjct: 68 V 68
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 207 INMNRSQDANHGFGICVK-GGANNP----GVGVYISRVEEGSIAERAGLRPGDSILQVNG 261
I + +D GF I GG NP G++++RV+ A + L+PGD I+Q NG
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANG 63
Query: 262 IPFTGISHEEALKMC 276
F I H +A+ +
Sbjct: 64 YSFINIEHGQAVSLL 78
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQVN 260
T+ ++R+ GFGI + GG +NP + IS V +G AE L+ D + VN
Sbjct: 10 TVTLHRA--PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
G+ + H A++ Q+ KS + +T+R
Sbjct: 67 GVSMDNVEHAFAVQ----------QLRKSGKNAKITIR 94
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQVN 260
T+ ++R+ GFGI + GG +NP + IS V +G AE L+ D + VN
Sbjct: 10 TVTLHRA--PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
G+ + H A++ Q+ KS + +T+R
Sbjct: 67 GVSMDNVEHAFAVQ----------QLRKSGKNAKITIR 94
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQVN 260
T+ ++R+ GFGI + GG +NP + IS V +G AE L+ D + VN
Sbjct: 13 TVTLHRA--PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 69
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
G+ + H A++ Q+ KS + +T+R
Sbjct: 70 GVSMDNVEHAFAVQ----------QLRKSGKNAKITIR 97
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + G G+++S + G A+ +G LR GD IL VNG+ +HE+A
Sbjct: 24 GLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQA 77
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 213 QDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
+D+ G+ V GG + +I++V++GS+A+ G LRPGD +L+ NG G +
Sbjct: 44 RDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF 103
Query: 270 EEALKMCF 277
EE +
Sbjct: 104 EEVYNIIL 111
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQVN 260
T+ ++R+ GFGI + GG +NP + IS V +G AE L+ D + VN
Sbjct: 10 TVTLHRA--PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
G+ + H A++ Q+ KS + +T+R
Sbjct: 67 GVSMDNVEHAFAVQ----------QLRKSGKNAKITIR 94
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 207 INMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAER-AGLRPGDSILQVNGIPF- 264
I++ R GF + N V +++ V+ GS+A+R L+ D IL +N P
Sbjct: 29 IDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 265 TGISHEEALKMC 276
ISH++A+ +
Sbjct: 89 QNISHQQAIALL 100
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
GFG + GG + PG + I V A+R G L PGD ++ V+GIP G +H + +
Sbjct: 21 GFGFRILGG-DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
Query: 277 FFEGYKEGQMLKSNRELSMTVR 298
N ++++TVR
Sbjct: 80 HHA--------ARNGQVNLTVR 93
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 218 GFGICVKG--GANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPF-TGISHEEAL 273
G G V G N +G+++ ++EGS+A R G L+ D IL +NG I+H++A+
Sbjct: 33 GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAI 92
Query: 274 KM 275
+
Sbjct: 93 SI 94
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
G+G + + PG +I V+ S AE +GLR D I++VNG+ G H + +
Sbjct: 21 GYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS-AI 77
Query: 278 FEGYKEGQMLKSNRE 292
G E ++L +RE
Sbjct: 78 RAGGDETKLLVVDRE 92
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + GG + G G+++S + G A+ +G LR GD IL VNG+ +HE+A
Sbjct: 27 GLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQA 80
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 225 GGANNP----GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
GG NP G++++RV+ A + L+PGD I+Q NG F I H +A+ +
Sbjct: 13 GGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLL 67
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 233 GVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNR 291
G++ISR+ G +A+ GL D +L+VNGI +G S ++ M M+ ++R
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDM----------MIANSR 115
Query: 292 ELSMTVR 298
L +TVR
Sbjct: 116 NLIITVR 122
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 216 NHGFGICVKGGANNPGVGVYIS------RVEEGSIAER-AGLRPGDSILQVNGIPFTGIS 268
N GFG + N P G I+ R+ +GS A+R A L+ GD IL VNG +
Sbjct: 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80
Query: 269 HEEALKM 275
H + +K+
Sbjct: 81 HADIVKL 87
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 225 GGANNP----GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
GG NP G++++RV+ A + L+PGD I+Q NG F I H +A+ +
Sbjct: 14 GGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLL 68
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
G+G + + PG +I V+ S AE +GLR D I++VNG+ G H + +
Sbjct: 16 GYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS-AI 72
Query: 278 FEGYKEGQMLKSNRE 292
G E ++L +RE
Sbjct: 73 RAGGDETKLLVVDRE 87
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
G+G + + PG +I V+ S AE +GLR D I++VNG+ G H + +
Sbjct: 21 GYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS-AI 77
Query: 278 FEGYKEGQMLKSNRE 292
G E ++L +RE
Sbjct: 78 RAGGDETKLLVVDRE 92
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
G+G + + PG +I V+ S AE +GLR D I++VNG+ G H + +
Sbjct: 21 GYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVS-AI 77
Query: 278 FEGYKEGQMLKSNRE 292
G E ++L +RE
Sbjct: 78 RAGGDETKLLVVDRE 92
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G I GA +G+Y+ V +G A+ G L GD +L V+G G+S E A ++
Sbjct: 18 GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 76
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 216 NHGFGICVKGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
++ GI V GG N G+Y+ V AE G + GD +L VNG+ G +H++A
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 273 LK 274
++
Sbjct: 75 VE 76
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 233 GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
G++I V E S A + G L+PGD I++V+G+ SHE+A++
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE 102
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 369 RKVELNIEPGQSLGLMIRGGV---------EYNLGIFITGVDKDSVAERAGLL 412
R+VEL EP +SLG+ I GG E GIFI V +DS A + G L
Sbjct: 26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTL 78
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 233 GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
G++I V E S A + G L+PGD I++V+G+ SHE+A++
Sbjct: 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE 82
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 369 RKVELNIEPGQSLGLMIRGGV---------EYNLGIFITGVDKDSVAERAGLL 412
R+VEL EP +SLG+ I GG E GIFI V +DS A + G L
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTL 58
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 216 NHGFGICVKGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
++ GI V GG N G+Y+ V AE G + GD +L VNG+ G +H++A
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 273 LK 274
++
Sbjct: 75 VE 76
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G I GA +G+Y+ V +G A+ G L GD +L V+G G+S E A ++
Sbjct: 18 GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 76
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G I GA +G+Y+ V +G A+ G L GD +L V+G G+S E A ++
Sbjct: 24 GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ ++G+G ++ G G I +E GS AE AGL+ D ++ VNG + H+
Sbjct: 12 KKGSNGYGFYLRAGPEQKGQ--IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGV 69
Query: 273 LKMCFFEGYKEGQMLKSNREL 293
++M +G + +L ++EL
Sbjct: 70 VEM-IRKGGDQTTLLVLDKEL 89
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G I GA +G+Y+ V +G A+ G L GD +L V+G G+S E A ++
Sbjct: 24 GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA---LKMCFFEGYKEGQMLKS 289
G+++ V+ S A GLR GD +LQ+NG G S ++A LK F E
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE---------- 77
Query: 290 NRELSMTVR 298
+++MT+R
Sbjct: 78 --KITMTIR 84
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ ++G+G ++ G G I +E GS AE AGL+ D ++ VNG + H+
Sbjct: 9 KKGSNGYGFYLRAGPEQKGQ--IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGV 66
Query: 273 LKM 275
++M
Sbjct: 67 VEM 69
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 205 RTINMNRSQDANHGFGICVKGGA------NNPGVGVYISRVEEGSIAERAG-LRPGDSIL 257
T + + D GFGI ++G ++P + IS +E S AER G L+ GD ++
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPL---ISYIEADSPAERCGVLQIGDRVM 62
Query: 258 QVNGIPFTGISHEEALKM 275
+NGIP + EEA ++
Sbjct: 63 AINGIPTEDSTFEEANQL 80
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 205 RTINMNRSQDANHGFGICVKGGA------NNPGVGVYISRVEEGSIAERAG-LRPGDSIL 257
T + + D GFGI ++G ++P + IS +E S AER G L+ GD ++
Sbjct: 15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPL---ISYIEADSPAERCGVLQIGDRVM 71
Query: 258 QVNGIPFTGISHEEALKM 275
+NGIP + EEA ++
Sbjct: 72 AINGIPTEDSTFEEANQL 89
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 218 GFGICVKGGAN-NPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G+ + GG N N G VYI V G + G L+PGD ++ +N G+S EEA
Sbjct: 26 GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA 82
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA---LKMCFFE 279
G+++ V+ S A GLR GD +LQ+NG G S ++A LK F E
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 219 FGICVKGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
GI V GG N G+Y+ + AE G + GD +L VNG+ G +H++A++
Sbjct: 25 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 83
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 35.0 bits (79), Expect = 0.081, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
R I + R +D GF IC ++P V + V+ G AERAGL+ D++LQ+N P
Sbjct: 5 RQITIPRGKDG-FGFTIC----CDSP---VRVQAVDSGGPAERAGLQQLDTVLQLNERP 55
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 205 RTINMNRSQDANHGFGICVKGGA------NNPGVGVYISRVEEGSIAERAG-LRPGDSIL 257
T + + D GFGI ++G ++P + IS +E S AER G L+ GD ++
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPL---ISYIEADSPAERCGVLQIGDRVM 62
Query: 258 QVNGIPFTGISHEEA 272
+NGIP + EEA
Sbjct: 63 AINGIPTEDSTFEEA 77
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 219 FGICVKG-GANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
GI + + PG + IS +++GS+A R G L GD +L ++ I S E+A+++
Sbjct: 121 LGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQI 179
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 213 QDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGI 267
+ N G G + GG +NP V G++I+++ G A G L D +L+VN + + +
Sbjct: 11 ERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEV 70
Query: 268 SHEEALK 274
H A++
Sbjct: 71 VHSRAVE 77
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 219 FGICVKGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
GI V GG N G+Y+ + AE G + GD +L VNG+ G +H++A++
Sbjct: 17 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 75
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCF 277
GI ++GGAN I ++ G A G L+ G IL+VNG+ G H EA ++
Sbjct: 19 LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARI-I 77
Query: 278 FEGYK 282
E +K
Sbjct: 78 AEAFK 82
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPF 264
T++M + GFG ++GG + +Y+ R+ E A R G +R GD I+++NG
Sbjct: 14 TVDMEK---GAKGFGFSIRGGREYK-MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 265 TGISHEEALKMCFFEGYKEGQMLK 288
++H A+++ G + +LK
Sbjct: 70 RDMTHARAIELIKSGGRRVRLLLK 93
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
+I + P T + R D + G V+ G I + G IAER G+R G I+
Sbjct: 86 NIVRCPPVTTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGGVRVGHRII 137
Query: 258 QVNGIPFTGISHEEALKM 275
++NG HE+ + +
Sbjct: 138 EINGQSVVATPHEKIVHI 155
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 194 LTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAER-AGLRP 252
+P I VR + + + + + ++GG ++P V +S V EG AER G+
Sbjct: 9 FSPEQIAGKDVRLLRIKKEGSLD----LALEGGVDSPVGKVVVSAVYEGGAAERHGGVVK 64
Query: 253 GDSILQVNGIPFTGISHEEA 272
GD I+ +NG T + EA
Sbjct: 65 GDEIMAINGKIVTDYTLAEA 84
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQV 259
GV I +V GS A RAGLRPGD IL +
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAI 283
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVN 260
GV I +V GS A RAGLRPGD IL +
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIG 63
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 199 IDQLPVRTINMNRSQDANHGFGICVKG---GANN--PGVGVYISRVEEGSIAERAG-LRP 252
+++L + + + + +D G GI + G GA+ +G+++ V EG A+R G ++
Sbjct: 76 VEKLELFPVELEKDED---GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 132
Query: 253 GDSILQVNGIPFTGISH 269
D I++V+GI G++
Sbjct: 133 NDQIVEVDGISLVGVTQ 149
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 218 GFGICVKGG---ANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEAL 273
G G+ VKG N+ +G+++ + G A + G LR D ++ VNG G +++EA+
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 274 K 274
+
Sbjct: 82 E 82
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 218 GFGICVKGG---ANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEAL 273
G G+ VKG N+ +G+++ + G A + G LR D ++ VNG G +++EA+
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 274 K 274
+
Sbjct: 79 E 79
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ +++V E A+ A LRPGD I+ +NG G+ H EA
Sbjct: 28 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEA 66
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
PV T+ + R D + G V+ G I + G IAER G+R G I+++NG
Sbjct: 2 PVTTV-LIRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGGVRVGHRIIEINGQ 52
Query: 263 PFTGISHEEALKM 275
HE+ + +
Sbjct: 53 SVVATPHEKIVHI 65
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ +++V E A+ A LRPGD I+ +NG G+ H EA
Sbjct: 27 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEA 65
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ ++G+G ++ G G I +E GS AE AGL+ D ++ VNG + H+
Sbjct: 13 KKGSNGYGFYLRAGPEQKGQ--IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGV 70
Query: 273 LKMC 276
++M
Sbjct: 71 VEMI 74
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 207 INMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
I + R +D GF IC ++P V + V+ G AERAGL+ D++LQ+N P
Sbjct: 19 ITIRRGKDG-FGFTIC----CDSP---VRVQAVDSGGPAERAGLQQLDTVLQLNERP 67
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 219 FGICVKGGA----NNP----GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
GI ++GGA NP G++IS+V A R G LR G +L+VN G++H
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 270 EEALKM 275
EA+++
Sbjct: 83 GEAVQL 88
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVE---------YNLGIFITGVDKDSVAERAGLLVSQLTL 418
+R++ + PG+ LG+ IRGG + GIFI+ V A R G L L L
Sbjct: 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 419 YQFIKEFLILSDH 431
+ ++ L+ H
Sbjct: 70 LEVNQQSLLGLTH 82
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 234 VYISRVEEGSIAERAGL-RPGDSILQVNGIPFTGISHEEALKMC 276
V ISR+ +G AE++GL GD +L++NGI G E +
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHE 270
R D + G V+ G I + G IAER G+R G I+++NG HE
Sbjct: 18 RRPDLRYQLGFSVQNGI--------ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHE 69
Query: 271 E 271
+
Sbjct: 70 K 70
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVN 260
+I++ +S A +G + + +Y++ V+E +A + GL+ GD IL++N
Sbjct: 9 SIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEIN 63
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G+ V A +G+++ V EG A+R G ++ D I++V+GI G++ A
Sbjct: 23 GMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 76
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 214 DANHGFGICV---KGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGI 267
D + G + V KGG N G+Y+ + AE G + GD +L VNG+ G
Sbjct: 14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 268 SHEEALK 274
+H++A++
Sbjct: 74 THKQAVE 80
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFF 278
G CV+ G I + G IAER G+R G I+++NG H +++
Sbjct: 22 LGFCVEDG--------IICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIEL-LT 72
Query: 279 EGYKE 283
E Y E
Sbjct: 73 EAYGE 77
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKE 283
+GV + E S RAG+RPGD I+ N P T + ++L+ E KE
Sbjct: 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV---KSLQTIAQEKKKE 434
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G +S+V S AE AGL+ GD I Q+N T
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKE 283
+GV + E S RAG+RPGD I+ N P T + ++L+ E KE
Sbjct: 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV---KSLQTIAQEKKKE 434
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G +S+V S AE AGL+ GD I Q+N T
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVN 260
++I++ +S A +G + + +Y++ V+E +A + GL+ GD IL++N
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEIN 72
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKE 283
+GV + E S RAG+RPGD I+ N P T + ++L+ E KE
Sbjct: 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV---KSLQTIAQEKKKE 434
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G +S+V S AE AGL+ GD I Q+N T
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ +++V E AE A LRPGD I+ +NG + H EA
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEA 70
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 233 GVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISHEEALK 274
G++I +V E S A + L+ GD IL+V+G+ SH EA++
Sbjct: 51 GIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE 93
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
+++ +V+EG A AGL GD I++VNG G ++ + + +
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIAL 104
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 233 GVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALKMCF 277
G++ISR+ G +AE GL D +++VNGI G + ++ M
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV 84
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 233 GVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALKM 275
G++ISR+ G +AE GL D +++VNGI G + ++ M
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM 110
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 217 HGFGICV---KGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
GFG + KG PG ++ V+ G A++AG++ GD ++ V G G+ HEE +
Sbjct: 14 QGFGFLLREEKGLDGRPGQ--FLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETV 71
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 233 GVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALKMCF 277
G++ISR+ G +AE GL D +++VNGI G + ++ M
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV 112
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 233 GVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALKMCF 277
G++ISR+ G +AE GL D +++VNGI G + ++ M
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV 86
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
GVY++ + +A RAG+ D +++VNG SHEE ++
Sbjct: 33 GVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVE 74
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 32.0 bits (71), Expect = 0.71, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 224 KGGANNP--GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
KGG N G+Y+ V AE G + GD +L VNG+ G +H++A++
Sbjct: 32 KGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 85
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G+Y+ V S ++R G++ GD I++VNG P
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV 68
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 234 VYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ I R++ S+ +R+G L PGD IL ++G S EA K+
Sbjct: 44 ITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKL 86
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 220 GICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G+ V A +G+++ V EG A+R G ++ D I++V+GI G++ A
Sbjct: 28 GMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 81
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 233 GVYISR-VEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKE 283
G+++S+ V+ G A+ GL+ D I++VNG + +H++A++ F+ KE
Sbjct: 42 GIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA--FKTAKE 91
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 233 GVYISRVEEGSIAERAGL-RPGDSILQVNGIPFTGISHEEALKM 275
+ ++R+ G A+R+GL GD + +VNGIP EE +++
Sbjct: 29 AIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQI 72
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+ ISRV GS A A L PGD I +NG ++H EA
Sbjct: 28 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEA 66
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA---LKMC 276
+ ISRV GS A A L PGD I +NG ++H EA +K C
Sbjct: 34 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 79
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
I +++E S A AGL+ GD + +NG+ G ++++ + +
Sbjct: 52 ICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDL 91
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 206 TINMNRSQDANHGFGICVKGGAN---NPGVGVYISRVEEGSIAERAG-LRPGDSILQVNG 261
T+ + + + G G+ +KG + +G++I + G A + G LR D ++ VNG
Sbjct: 26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85
Query: 262 IPFTGISHEEALK 274
G S+ EA++
Sbjct: 86 ETLLGKSNHEAME 98
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S+V S A +AG++ GD I +NG P +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
G G + GG + G G++IS + G A+ +G LR GD I+ VN +
Sbjct: 16 GLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDRIISVNSV 59
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 213 QDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVN 260
Q+ ++GF I K A V + V+ GS+AE AGL+ G I +N
Sbjct: 26 QEEDYGFDIEEKNKA------VVVKSVQRGSLAEVAGLQVGRKIYSIN 67
>pdb|2DDC|A Chain A, Unique Behavior Of A Histidine Responsible For An
Engineered Green-To-Red Photoconversion Process
pdb|2DDC|B Chain B, Unique Behavior Of A Histidine Responsible For An
Engineered Green-To-Red Photoconversion Process
pdb|2DDD|A Chain A, Unique Behavior Of A Histidine Responsible For An
Engineered Green-To- Red Photoconversion Process
pdb|2DDD|B Chain B, Unique Behavior Of A Histidine Responsible For An
Engineered Green-To- Red Photoconversion Process
Length = 225
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 356 RWNYSARS--SKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+W S +D V K ++N + L+++GG Y T K V
Sbjct: 139 KWESSTEKMYVRDGVLKGDVN------MALLLQGGGHYRCDFRTTYKAKKVV-------- 184
Query: 414 SQLTLYQFIKEFLILSDHDKDFDTVISFSHEQTSPSM 450
QL Y F+ + ++ HDKD++ V + H + +
Sbjct: 185 -QLPDYHFVDHLMEITSHDKDYNKVKLYEHAKAHSGL 220
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
+ V+ S A +AGL+ GD I++V+G P T
Sbjct: 7 LENVQPNSAASKAGLQAGDRIVKVDGQPLT 36
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
+ V+ S A +AGL+ GD I++V+G P T
Sbjct: 6 LENVQPNSAASKAGLQAGDRIVKVDGQPLT 35
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 214 DANHGFGICVKGGA------NNPGVGVYISRVEEGSIAERAGL-RPGDSILQVNGIPFTG 266
D GFG+ ++GG ++P + +I E S AER GL + GD +L +NGI
Sbjct: 24 DPLSGFGLQLQGGIFATETLSSPPLVCFI---EPDSPAERCGLLQVGDRVLSINGIATED 80
Query: 267 ISHEEA 272
+ EEA
Sbjct: 81 GTMEEA 86
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
R +G+G + PG +I V++G A+ AGL D I++VNG+
Sbjct: 8 RLAKGENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAGLEDEDVIIEVNGV 57
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
R +G+G + PG +I V++G A+ AGL D I++VNG+
Sbjct: 8 RLAKGENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAGLEDEDVIIEVNGV 57
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
+ V+ S A +AGL+ GD I++V+G P T
Sbjct: 6 LENVQPNSAASKAGLQAGDRIVKVDGQPLT 35
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 219 FGICVKGGA--NNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+G ++GG N P + ISR+ GS A ++ L GD ++ ++G+ ++H EA
Sbjct: 13 WGFRLQGGKDFNMP---LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 65
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 218 GFGICVKGG-----ANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISHEE 271
G G ++GG + P + I+R+ +G+ +E++ ++PGD ILQ+ G G++ E
Sbjct: 41 GLGFSLEGGKGSLHGDKP---LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE 97
Query: 272 A 272
A
Sbjct: 98 A 98
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G +S+V S AE AGL+ GD I Q+N T
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S V GS + +AG++ GD I +NG P
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 219 FGICVKGGA--NNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+G ++GG N P + ISR+ GS A ++ L GD ++ ++G+ ++H EA
Sbjct: 20 WGFRLQGGKDFNMP---LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 72
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G ++S V GS + +AG++ GD I +NG P
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 219 FGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCF 277
GI + G P + IS + +G +AER G + GD IL +N G EA+ +
Sbjct: 18 LGITISG-TEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Query: 278 FEG 280
G
Sbjct: 77 MAG 79
>pdb|4DXM|A Chain A, Crystal Structure Of An Ancestral Gfp-like Protein
pdb|4DXM|B Chain B, Crystal Structure Of An Ancestral Gfp-like Protein
pdb|4DXM|C Chain C, Crystal Structure Of An Ancestral Gfp-like Protein
pdb|4DXM|D Chain D, Crystal Structure Of An Ancestral Gfp-like Protein
Length = 229
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVI 439
++ L++ GG Y T K V QL Y F+ + + HDKD++ V
Sbjct: 156 NMALLLEGGGHYRCDFKTTYKAKKGV---------QLPDYHFVDHRIEILSHDKDYNNVK 206
Query: 440 SFSHEQTSPSMYGVQA 455
+ H SM QA
Sbjct: 207 LYEHAVARYSMLPRQA 222
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
GF I + +Y+ + G+ + L+ GD +++VNG+ G S EE + +
Sbjct: 19 GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL 77
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 234 VYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
+Y+ + G+ + L+ GD +++VNG+ G S EE + +
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 219 FGICVKGGANN--PGVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISHEEAL 273
+G +KGG + P + +S++E+G A + +R GD ++ +NG P G S +EAL
Sbjct: 23 WGFTLKGGLEHCEP---LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEAL 76
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGI 262
G +I V++G A+ AGL D I++VNG+
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVNGV 61
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPF 264
G G + GG + G G++IS + G A+ +G LR GD I+ VN +
Sbjct: 19 GLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 64
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 234 VYISRV-EEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276
+Y+ + G+ + L+ GD +++VNG+ G S EE + +
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 84
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 226 GANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
G + V + ISR+ G A +AG+ GD +L ++G ++H EA
Sbjct: 21 GGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEA 67
>pdb|1XSS|A Chain A, Semi-Rational Engineering Of A Green-Emitting Coral
Fluorescent Protein Into An Efficient Highlighter.
pdb|1XSS|B Chain B, Semi-Rational Engineering Of A Green-Emitting Coral
Fluorescent Protein Into An Efficient Highlighter
Length = 225
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 365 KDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKE 424
+D V K ++N + L+++GG Y T K V QL Y F+
Sbjct: 150 RDGVLKGDVN------MALLLQGGGHYRCDFRTTYKAKKVV---------QLPDYHFVDH 194
Query: 425 FLILSDHDKDFDTVISFSHEQ 445
+ ++ HDKD++ V + H +
Sbjct: 195 RIEITSHDKDYNKVKLYEHAK 215
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
G I GG+ G V + G AE+AG R GD I+ V+G G+S
Sbjct: 88 GLEITYDGGS---GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLS 135
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 218 GFGICVKGGANNPG-VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
GFG+ + GG + G + + + + A+R G L GD +L +NG G++H +A++
Sbjct: 23 GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVE 81
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 217 HGFGICVKGGANNPGVGVYISRVE-EGSIAERAGLRPGDSILQVNGIPFTGISHEEA 272
+G G+ + G + + +++ + EG A +R GD +L++N G SH+ A
Sbjct: 36 NGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGI 262
GVY+ + + GL+P D +LQVN +
Sbjct: 33 GVYVKNIRPAGPGDLGGLKPYDRLLQVNHV 62
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 217 HGFGICVKGGANNPGV---GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G GI + G + + G+++ + + S E G ++ GD I+ V+G G ++++A
Sbjct: 15 QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 273 LKM 275
+++
Sbjct: 75 VEV 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,893,128
Number of Sequences: 62578
Number of extensions: 367899
Number of successful extensions: 1171
Number of sequences better than 100.0: 243
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 324
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)