Query psy14977
Match_columns 469
No_of_seqs 300 out of 2370
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:22:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.9 2.7E-26 5.9E-31 241.8 20.0 248 160-444 710-974 (984)
2 KOG3209|consensus 99.9 4.6E-23 9.9E-28 217.6 18.8 179 204-445 650-830 (984)
3 KOG3580|consensus 99.8 1.3E-17 2.8E-22 173.9 19.3 241 203-468 198-508 (1027)
4 KOG3580|consensus 99.7 4.8E-17 1E-21 169.7 17.3 243 203-458 8-284 (1027)
5 KOG3605|consensus 99.6 1.7E-14 3.6E-19 152.4 11.3 162 204-448 646-810 (829)
6 TIGR02037 degP_htrA_DO peripla 99.5 1.1E-12 2.4E-17 138.7 17.4 140 232-440 257-406 (428)
7 PRK10942 serine endoprotease; 99.4 6.7E-12 1.5E-16 134.2 19.2 142 231-441 310-453 (473)
8 PRK10139 serine endoprotease; 99.4 8E-12 1.7E-16 133.0 17.3 142 231-441 289-435 (455)
9 PRK10779 zinc metallopeptidase 99.4 2.5E-12 5.5E-17 136.8 13.2 139 233-440 127-265 (449)
10 PF00595 PDZ: PDZ domain (Also 99.4 3.6E-12 7.9E-17 103.5 9.3 72 371-443 2-74 (81)
11 PF00595 PDZ: PDZ domain (Also 99.4 4.8E-12 1E-16 102.8 9.8 80 206-297 1-80 (81)
12 KOG3550|consensus 99.2 1.1E-11 2.3E-16 110.4 6.8 81 368-450 91-177 (207)
13 KOG3551|consensus 99.2 1.5E-11 3.2E-16 123.9 7.2 93 367-460 84-184 (506)
14 TIGR00054 RIP metalloprotease 99.2 1.4E-10 3E-15 122.6 13.3 120 232-440 128-247 (420)
15 KOG3550|consensus 99.1 1.3E-10 2.9E-15 103.5 7.5 84 203-300 90-174 (207)
16 KOG3551|consensus 99.1 6.3E-10 1.4E-14 112.3 12.0 85 203-300 84-169 (506)
17 KOG3549|consensus 99.0 4.1E-10 8.8E-15 112.2 6.0 84 367-451 54-138 (505)
18 KOG3553|consensus 99.0 9.3E-10 2E-14 91.6 6.5 61 380-441 36-106 (124)
19 cd00136 PDZ PDZ domain, also c 99.0 3.8E-09 8.2E-14 82.8 9.6 68 218-297 2-69 (70)
20 cd00992 PDZ_signaling PDZ doma 99.0 4.4E-09 9.6E-14 84.8 10.1 73 369-442 2-74 (82)
21 cd00992 PDZ_signaling PDZ doma 99.0 7.1E-09 1.5E-13 83.5 11.1 70 205-277 2-71 (82)
22 KOG3549|consensus 98.9 1.2E-09 2.7E-14 108.8 6.6 86 204-302 55-141 (505)
23 smart00228 PDZ Domain present 98.9 4.3E-08 9.4E-13 79.0 12.3 82 205-300 3-84 (85)
24 cd00136 PDZ PDZ domain, also c 98.8 1.4E-08 3E-13 79.6 7.9 60 380-442 2-61 (70)
25 PF13180 PDZ_2: PDZ domain; PD 98.8 2.5E-08 5.5E-13 81.2 8.4 72 218-301 2-73 (82)
26 cd00988 PDZ_CTP_protease PDZ d 98.8 6.5E-08 1.4E-12 78.7 10.2 71 217-300 2-72 (85)
27 KOG3553|consensus 98.8 2.2E-09 4.8E-14 89.4 1.1 72 206-277 18-104 (124)
28 smart00228 PDZ Domain present 98.7 8.8E-08 1.9E-12 77.2 10.2 71 370-442 4-74 (85)
29 COG0793 Prc Periplasmic protea 98.7 3.1E-08 6.8E-13 104.1 8.8 95 188-300 77-171 (406)
30 KOG3571|consensus 98.6 6.8E-08 1.5E-12 100.6 7.3 77 366-443 248-327 (626)
31 PLN00049 carboxyl-terminal pro 98.5 2.6E-07 5.5E-12 96.9 9.1 106 188-299 62-171 (389)
32 KOG3542|consensus 98.5 6E-08 1.3E-12 103.6 3.9 76 367-443 535-611 (1283)
33 PF13180 PDZ_2: PDZ domain; PD 98.5 2.7E-07 5.9E-12 75.1 6.9 57 380-440 2-58 (82)
34 TIGR00225 prc C-terminal pepti 98.5 4E-07 8.6E-12 93.5 8.2 80 188-277 28-107 (334)
35 KOG1892|consensus 98.5 2.5E-07 5.3E-12 102.1 6.8 94 370-464 934-1036(1629)
36 PRK11186 carboxy-terminal prot 98.5 4.4E-07 9.6E-12 100.5 8.9 93 188-299 221-319 (667)
37 KOG1892|consensus 98.5 3.4E-07 7.4E-12 101.0 7.7 88 200-301 930-1020(1629)
38 cd00988 PDZ_CTP_protease PDZ d 98.4 5E-07 1.1E-11 73.5 6.7 57 380-440 3-59 (85)
39 cd00990 PDZ_glycyl_aminopeptid 98.4 1.5E-06 3.1E-11 70.0 9.3 44 219-266 3-46 (80)
40 KOG3571|consensus 98.3 1.4E-06 3E-11 91.0 8.2 94 202-302 246-341 (626)
41 cd00991 PDZ_archaeal_metallopr 98.3 2.4E-06 5.3E-11 69.1 7.4 61 231-301 9-69 (79)
42 cd00989 PDZ_metalloprotease PD 98.3 4.4E-06 9.5E-11 66.8 8.7 57 233-300 13-69 (79)
43 KOG3651|consensus 98.2 2.9E-06 6.2E-11 83.8 7.8 74 369-443 6-80 (429)
44 KOG3542|consensus 98.2 1.9E-06 4.2E-11 92.4 7.1 85 203-300 535-619 (1283)
45 KOG3606|consensus 98.2 1.8E-06 4E-11 84.0 5.9 87 203-300 158-253 (358)
46 cd00989 PDZ_metalloprotease PD 98.1 7.1E-06 1.5E-10 65.6 6.8 46 393-441 12-57 (79)
47 cd00991 PDZ_archaeal_metallopr 98.1 6.9E-06 1.5E-10 66.5 6.7 47 392-441 9-55 (79)
48 KOG3606|consensus 98.1 4.9E-06 1.1E-10 81.1 6.5 76 367-443 158-244 (358)
49 cd00987 PDZ_serine_protease PD 98.1 1.3E-05 2.8E-10 65.5 7.7 59 232-300 24-82 (90)
50 cd00990 PDZ_glycyl_aminopeptid 98.1 1E-05 2.2E-10 65.0 6.3 52 381-438 3-54 (80)
51 KOG3552|consensus 98.0 3.4E-06 7.4E-11 93.2 4.1 84 368-460 56-145 (1298)
52 KOG3651|consensus 98.0 2.5E-05 5.4E-10 77.3 8.9 72 204-278 5-77 (429)
53 cd00986 PDZ_LON_protease PDZ d 98.0 2.7E-05 5.9E-10 62.7 7.6 43 232-277 8-50 (79)
54 TIGR01713 typeII_sec_gspC gene 98.0 3.5E-05 7.7E-10 76.5 9.4 72 219-301 179-250 (259)
55 cd00987 PDZ_serine_protease PD 97.9 2.1E-05 4.5E-10 64.3 5.6 46 393-441 24-69 (90)
56 KOG3605|consensus 97.8 1.3E-05 2.8E-10 86.1 4.3 77 365-443 643-723 (829)
57 KOG3552|consensus 97.8 2E-05 4.3E-10 87.4 5.7 77 203-300 55-132 (1298)
58 cd00986 PDZ_LON_protease PDZ d 97.8 5E-05 1.1E-09 61.1 5.8 44 393-440 8-51 (79)
59 PLN00049 carboxyl-terminal pro 97.8 6.6E-05 1.4E-09 78.9 7.9 60 380-440 86-148 (389)
60 TIGR00225 prc C-terminal pepti 97.7 4.7E-05 1E-09 78.2 6.6 57 380-440 52-108 (334)
61 PF04495 GRASP55_65: GRASP55/6 97.7 0.0011 2.3E-08 59.9 14.2 89 200-299 7-100 (138)
62 PRK10898 serine endoprotease; 97.6 0.00017 3.7E-09 74.8 8.8 36 232-267 279-314 (353)
63 COG0793 Prc Periplasmic protea 97.6 8.2E-05 1.8E-09 78.5 6.4 62 379-443 100-161 (406)
64 TIGR02038 protease_degS peripl 97.6 0.00016 3.5E-09 74.9 8.0 43 232-276 278-320 (351)
65 TIGR00054 RIP metalloprotease 97.6 0.00026 5.6E-09 75.1 8.8 65 232-298 203-269 (420)
66 TIGR01713 typeII_sec_gspC gene 97.5 0.00018 3.8E-09 71.6 6.7 47 393-439 191-237 (259)
67 TIGR02037 degP_htrA_DO peripla 97.5 0.00022 4.9E-09 75.7 7.7 60 232-301 362-421 (428)
68 KOG0609|consensus 97.5 0.00016 3.6E-09 76.8 6.5 74 367-443 122-196 (542)
69 PRK10139 serine endoprotease; 97.4 0.00039 8.5E-09 74.5 8.6 44 232-277 390-433 (455)
70 KOG0609|consensus 97.4 0.00059 1.3E-08 72.7 9.3 70 203-277 122-192 (542)
71 KOG1421|consensus 97.4 0.0018 3.9E-08 70.6 13.0 137 233-443 772-908 (955)
72 KOG3834|consensus 97.4 0.0024 5.2E-08 66.4 13.0 140 232-450 15-169 (462)
73 KOG4371|consensus 97.4 0.00073 1.6E-08 76.2 9.7 165 207-439 1151-1316(1332)
74 TIGR03279 cyano_FeS_chp putati 97.4 0.00055 1.2E-08 72.2 8.3 38 236-275 2-39 (433)
75 PRK10779 zinc metallopeptidase 97.4 0.00042 9.2E-09 74.1 7.7 64 232-297 221-286 (449)
76 KOG1421|consensus 97.3 0.0015 3.2E-08 71.2 10.9 53 394-451 405-457 (955)
77 KOG3938|consensus 97.3 0.00043 9.2E-09 67.7 5.8 83 204-300 127-210 (334)
78 PRK10942 serine endoprotease; 97.3 0.00088 1.9E-08 72.2 8.6 44 232-277 408-451 (473)
79 PRK11186 carboxy-terminal prot 97.2 0.0005 1.1E-08 76.6 6.7 60 380-443 245-310 (667)
80 TIGR02038 protease_degS peripl 97.2 0.00032 6.9E-09 72.7 4.6 45 393-440 278-322 (351)
81 PRK10898 serine endoprotease; 97.1 0.0005 1.1E-08 71.3 5.0 44 393-439 279-322 (353)
82 KOG0606|consensus 97.1 0.00059 1.3E-08 77.9 5.8 81 206-299 629-715 (1205)
83 TIGR02860 spore_IV_B stage IV 97.1 0.0035 7.5E-08 65.8 10.6 75 216-298 95-179 (402)
84 KOG4407|consensus 97.1 0.00057 1.2E-08 78.3 5.0 49 394-443 144-192 (1973)
85 PF04495 GRASP55_65: GRASP55/6 97.0 0.0047 1E-07 55.7 9.6 74 367-443 10-91 (138)
86 KOG3129|consensus 97.0 0.0021 4.6E-08 61.0 7.3 66 233-298 140-208 (231)
87 TIGR03279 cyano_FeS_chp putati 96.8 0.00091 2E-08 70.6 3.6 39 397-438 2-40 (433)
88 COG3975 Predicted protease wit 96.7 0.0029 6.3E-08 67.5 6.7 43 216-262 450-492 (558)
89 PF14685 Tricorn_PDZ: Tricorn 96.7 0.0064 1.4E-07 50.6 6.9 58 233-301 13-80 (88)
90 KOG3938|consensus 96.4 0.0032 7E-08 61.7 3.9 71 368-443 127-199 (334)
91 PRK09681 putative type II secr 96.4 0.012 2.7E-07 58.7 8.0 54 243-296 218-272 (276)
92 KOG1320|consensus 96.3 0.034 7.5E-07 59.4 11.7 47 393-442 398-444 (473)
93 COG0265 DegQ Trypsin-like seri 96.3 0.011 2.4E-07 60.9 7.5 39 231-269 269-307 (347)
94 TIGR02860 spore_IV_B stage IV 96.1 0.012 2.6E-07 61.8 6.6 55 380-442 97-159 (402)
95 COG3975 Predicted protease wit 95.9 0.0065 1.4E-07 64.9 3.9 47 380-429 452-500 (558)
96 KOG0606|consensus 95.7 0.01 2.2E-07 68.2 4.6 64 379-443 637-707 (1205)
97 KOG1320|consensus 95.6 0.029 6.4E-07 59.9 7.1 82 217-300 379-467 (473)
98 KOG3129|consensus 95.5 0.026 5.7E-07 53.7 5.8 47 395-441 141-187 (231)
99 PF14685 Tricorn_PDZ: Tricorn 95.3 0.04 8.8E-07 45.8 5.6 47 393-442 12-68 (88)
100 COG0265 DegQ Trypsin-like seri 95.1 0.027 5.8E-07 58.1 4.9 46 393-441 270-315 (347)
101 KOG1738|consensus 95.0 0.034 7.4E-07 60.5 5.5 58 216-276 212-270 (638)
102 KOG4371|consensus 94.7 0.023 4.9E-07 64.7 3.4 99 367-469 1145-1251(1332)
103 KOG1738|consensus 94.5 0.038 8.3E-07 60.2 4.2 65 376-443 210-275 (638)
104 KOG3532|consensus 94.3 0.14 2.9E-06 56.4 7.8 58 215-277 384-441 (1051)
105 COG3031 PulC Type II secretory 93.4 0.29 6.4E-06 47.7 7.6 63 217-302 205-267 (275)
106 PF12812 PDZ_1: PDZ-like domai 93.2 0.22 4.8E-06 40.4 5.5 46 394-442 31-76 (78)
107 COG3480 SdrC Predicted secrete 93.0 0.26 5.6E-06 50.0 6.8 56 233-300 131-187 (342)
108 KOG3532|consensus 92.3 0.27 5.8E-06 54.2 6.2 60 379-443 386-445 (1051)
109 COG3480 SdrC Predicted secrete 91.6 0.24 5.3E-06 50.2 4.6 45 393-442 130-175 (342)
110 KOG3834|consensus 91.4 0.66 1.4E-05 48.8 7.6 90 195-298 69-165 (462)
111 PRK09681 putative type II secr 91.3 0.24 5.1E-06 49.7 4.2 44 400-443 211-257 (276)
112 COG3031 PulC Type II secretory 84.7 1.6 3.6E-05 42.7 5.1 59 376-446 202-260 (275)
113 PF12812 PDZ_1: PDZ-like domai 83.9 1.7 3.7E-05 35.3 4.2 43 233-277 31-73 (78)
114 KOG4407|consensus 81.9 0.71 1.5E-05 54.3 1.7 45 233-277 144-188 (1973)
115 COG0750 Predicted membrane-ass 81.0 2.2 4.8E-05 44.1 4.9 34 396-429 132-165 (375)
116 COG0750 Predicted membrane-ass 79.2 4.3 9.3E-05 42.0 6.3 35 235-269 132-166 (375)
117 KOG0792|consensus 77.7 4.1 8.9E-05 47.5 5.9 65 216-280 715-798 (1144)
118 KOG0792|consensus 75.0 1.1 2.4E-05 51.8 0.6 65 378-443 715-799 (1144)
119 KOG2921|consensus 74.3 2.8 6.1E-05 43.8 3.2 47 391-440 218-265 (484)
120 PF11874 DUF3394: Domain of un 74.1 11 0.00023 35.8 6.7 55 201-259 90-149 (183)
121 PF11874 DUF3394: Domain of un 70.3 14 0.00029 35.0 6.5 51 368-421 93-150 (183)
122 cd01259 PH_Apbb1ip Apbb1ip (Am 60.5 4.4 9.4E-05 35.3 1.1 12 79-90 25-36 (114)
123 KOG3751|consensus 47.3 8.7 0.00019 41.7 1.0 12 79-90 342-353 (622)
124 KOG2921|consensus 40.6 29 0.00062 36.6 3.5 44 231-276 219-263 (484)
125 COG5233 GRH1 Peripheral Golgi 29.6 34 0.00074 35.1 2.0 32 234-265 65-96 (417)
126 PRK03760 hypothetical protein; 20.0 1.1E+02 0.0024 26.7 3.1 23 394-417 90-112 (117)
No 1
>KOG3209|consensus
Probab=99.94 E-value=2.7e-26 Score=241.78 Aligned_cols=248 Identities=25% Similarity=0.407 Sum_probs=166.0
Q ss_pred CCHHHHHHHhhcCCCCCC-------CCCCCCCCCCCCCCCCCCcccCCCCCeEEEEEecCCCCcceEEEEEEcCCCCCCC
Q psy14977 160 LSPEQVLKMLTSGGGGKK-------SAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV 232 (469)
Q Consensus 160 ~S~eq~l~~~~~~~~~~~-------s~~~s~~~~~~p~~~~~~~~~~~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~ 232 (469)
-||.+|++++..+..+.- ... ...+.+.|. .+.....+..|.|+|.+ +.||||.|......+..
T Consensus 710 ksH~~vv~Lm~~AArnghV~LtVRRkv~-~~~~~rsp~------~s~~~~~~yDV~lhR~E--NeGFGFVi~sS~~kp~s 780 (984)
T KOG3209|consen 710 KSHSEVVDLMEAAARNGHVNLTVRRKVR-TGPARRSPR------NSAAPSGPYDVVLHRKE--NEGFGFVIMSSQNKPES 780 (984)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeeeee-eccccCCcc------cccCCCCCeeeEEeccc--CCceeEEEEecccCCCC
Confidence 389999999987776321 000 000111111 12222335679999984 79999999998876555
Q ss_pred cEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCC---CC
Q psy14977 233 GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQA---PR 308 (469)
Q Consensus 233 gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~---~~ 308 (469)
+ |.+|.+|+||+++| |++||+|++|||+.|.+++|.+++++|| ..|-.|+|+|......... ..
T Consensus 781 g--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK----------daGlsVtLtIip~ee~~~~~~~~s 848 (984)
T KOG3209|consen 781 G--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK----------DAGLSVTLTIIPPEEAGPPTSMTS 848 (984)
T ss_pred C--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH----------hcCceEEEEEcChhccCCCCCCcc
Confidence 5 99999999999999 9999999999999999999999999976 5578899998765432111 11
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccc----CCCCCcceEEEEEecCCC-cccE
Q psy14977 309 NHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSA----RSSKDTVRKVELNIEPGQ-SLGL 383 (469)
Q Consensus 309 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~L~~~~g~-~LGf 383 (469)
.+.+.+.... .. .....+-+...+.-+... ++ +..+.+.. .........|+| +++. +|||
T Consensus 849 a~~~s~~t~~---~~--~~q~~glp~~~~s~~~~~----pq----pdt~~~~~~~~r~~qn~~~~~Vel--ErG~kGFGF 913 (984)
T KOG3209|consen 849 AEKQSPFTQN---GP--YEQQYGLPGPRPSVYEEH----PQ----PDTFQGLSINDRMSQNGDLYTVEL--ERGAKGFGF 913 (984)
T ss_pred hhhcCccccc---CC--HhHccCCCCCCccccccC----CC----CccccceeccccccccCCeeEEEe--eccccccce
Confidence 1111111100 00 000000000000000000 01 11122211 111224555555 6665 9999
Q ss_pred EEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCCc
Q psy14977 384 MIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSHE 444 (469)
Q Consensus 384 si~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~~ 444 (469)
+|+||.+|+.++||-.+.+++||.++| |++||+|++|||+++++|+ |+.|+++||+.+..
T Consensus 914 SiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmt-H~rAIelIk~gg~~ 974 (984)
T KOG3209|consen 914 SIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMT-HDRAIELIKQGGRR 974 (984)
T ss_pred EeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCc-HHHHHHHHHhCCeE
Confidence 999999999999999999999999999 9999999999999999999 99999999998763
No 2
>KOG3209|consensus
Probab=99.90 E-value=4.6e-23 Score=217.62 Aligned_cols=179 Identities=26% Similarity=0.335 Sum_probs=144.7
Q ss_pred eEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc
Q psy14977 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282 (469)
Q Consensus 204 ~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~ 282 (469)
..+|.|.|.+ .||||.|.||.+. +.+|+|..|.+.+.|+++| |+.||.|+.|+|.+|.+.+|.+++.+|..
T Consensus 650 ~ldV~L~rke---sGFGFRiLGG~ep-~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~---- 721 (984)
T KOG3209|consen 650 ELDVFLRRKE---SGFGFRILGGDEP-GQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEA---- 721 (984)
T ss_pred ceeEEEEeec---cccceEEecCCCC-CCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHH----
Confidence 3468888876 8999999999886 8899999999999999999 99999999999999999999999999763
Q ss_pred cceEeecCcEEEEEEECCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccC
Q psy14977 283 EGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSAR 362 (469)
Q Consensus 283 ~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (469)
.....+|.|+|+|........ ..++.++
T Consensus 722 ----AArnghV~LtVRRkv~~~~~~---------------------------------------------rsp~~s~--- 749 (984)
T KOG3209|consen 722 ----AARNGHVNLTVRRKVRTGPAR---------------------------------------------RSPRNSA--- 749 (984)
T ss_pred ----HHhcCceEEEEeeeeeecccc---------------------------------------------CCccccc---
Confidence 234689999998864321000 0000000
Q ss_pred CCCCcceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 363 ~~~~~~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
.......|.|+.+.+++|||.|..... ..+--|.+|.+||||+++| |++||+|++|||+++.+++ |.++|++||.+
T Consensus 750 -~~~~~yDV~lhR~ENeGFGFVi~sS~~-kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~ls-Hadiv~LIKda 826 (984)
T KOG3209|consen 750 -APSGPYDVVLHRKENEGFGFVIMSSQN-KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLS-HADIVSLIKDA 826 (984)
T ss_pred -CCCCCeeeEEecccCCceeEEEEeccc-CCCCCccccccCChhHhhccccccceEEEecCeeeeccC-chhHHHHHHhc
Confidence 012357788888888899999986553 2233399999999999999 9999999999999999999 99999999999
Q ss_pred CCcc
Q psy14977 442 SHEQ 445 (469)
Q Consensus 442 g~~~ 445 (469)
+..+
T Consensus 827 GlsV 830 (984)
T KOG3209|consen 827 GLSV 830 (984)
T ss_pred CceE
Confidence 9833
No 3
>KOG3580|consensus
Probab=99.77 E-value=1.3e-17 Score=173.85 Aligned_cols=241 Identities=23% Similarity=0.396 Sum_probs=149.7
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGY 281 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~ 281 (469)
.+..|+|+|.. .+.-||+.|. .-|||+.|...+.|++.| |+.||.||+|||...++++..++..+|.
T Consensus 198 ~p~kv~LvKsR-~nEEyGlrLg-------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIE---- 265 (1027)
T KOG3580|consen 198 GPIKVLLVKSR-ANEEYGLRLG-------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIE---- 265 (1027)
T ss_pred CcceEEEEeec-cchhhccccc-------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHH----
Confidence 34557788776 4678898763 369999999999999999 9999999999999999999999999965
Q ss_pred ccceEeecCcEEEEEEECCCCCC-----CCC----CCCCC-----------CCCCccccccccccccc------------
Q psy14977 282 KEGQMLKSNRELSMTVRSPSIPP-----QAP----RNHPL-----------PPPPAWTMRQAYSWIDR------------ 329 (469)
Q Consensus 282 ~~~~Ilr~g~~v~l~V~~~~~~~-----~~~----~~~~~-----------~~~~~~~~~~~~s~~~~------------ 329 (469)
+...++.|+|.+....- .+. ..... .++....-..++.....
T Consensus 266 ------kS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~ 339 (1027)
T KOG3580|consen 266 ------KSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSRE 339 (1027)
T ss_pred ------hccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccc
Confidence 55556666666543310 000 00000 00000000000000000
Q ss_pred -----CCC--CCCCCCCccCC----------------CCC-CCCCCCCCCCCccccCCC------CCcceEEEEEecCCC
Q psy14977 330 -----QGR--PCSPPLDYARS----------------VIP-MPPPPPPPPRWNYSARSS------KDTVRKVELNIEPGQ 379 (469)
Q Consensus 330 -----~~~--~~s~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~------~~~~~~V~L~~~~g~ 379 (469)
..+ ....|+..... ..+ .|.+......|-+..... ....+ .+.+.++.
T Consensus 340 ~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk--~VrF~KGd 417 (1027)
T KOG3580|consen 340 DTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTK--MVRFKKGD 417 (1027)
T ss_pred cchhhcccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCce--eEEeecCC
Confidence 000 00001100000 000 000111111111100000 01223 24558889
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC-------ccccccccC
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH-------EQTSPSMYG 452 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~-------~~~~p~~~~ 452 (469)
++|+.++||++ .||||..|.+|++|++.||+.||+||+||.++++++. .++||..|..... .|.+...|
T Consensus 418 SvGLRLAGGND--VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~-REeAVlfLL~lPkGEevtilaQ~k~Dvy- 493 (1027)
T KOG3580|consen 418 SVGLRLAGGND--VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLV-REEAVLFLLELPKGEEVTILAQSKADVY- 493 (1027)
T ss_pred eeeeEeccCCc--eeEEEeecccCCchhhccccccceeEEeccccchhhh-HHHHHHHHhcCCCCcEEeehhhhhhHHH-
Confidence 99999999986 9999999999999999999999999999999999999 9999999887654 23333334
Q ss_pred ceeEEeecCCCceEEe
Q psy14977 453 VQATLLSSSSGSIVIT 468 (469)
Q Consensus 453 ~q~~llss~~~~~~~~ 468 (469)
+.++-|--.+||||-
T Consensus 494 -r~iv~s~vGDSFyIR 508 (1027)
T KOG3580|consen 494 -RDIVASGVGDSFYIR 508 (1027)
T ss_pred -HHHHhccCCceeEEe
Confidence 567778888999983
No 4
>KOG3580|consensus
Probab=99.74 E-value=4.8e-17 Score=169.68 Aligned_cols=243 Identities=21% Similarity=0.250 Sum_probs=138.5
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCC-----CCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNP-----GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~-----~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
...+|+|.|++ ..||||.|.||.|++ ...|+|+.|.||+||+ | ||.+|+|+.|||+.+++..|..++++|
T Consensus 8 EQhTvTL~kdp--~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqL 83 (1027)
T KOG3580|consen 8 EQHTVTLQKDP--KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQL 83 (1027)
T ss_pred hhheeeeecCC--CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence 45789999997 489999999999974 2478999999999994 6 999999999999999999999999998
Q ss_pred hhcCccc-ceEeecCcEEEEEEECCCCCCCCC--CCCCCCCCCccccc--------------ccccccccCCCCCCCCCC
Q psy14977 277 FFEGYKE-GQMLKSNRELSMTVRSPSIPPQAP--RNHPLPPPPAWTMR--------------QAYSWIDRQGRPCSPPLD 339 (469)
Q Consensus 277 r~~~~~~-~~Ilr~g~~v~l~V~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~s~~~~~~~~~s~~~~ 339 (469)
|.++... |+|-+ .++|.+-+.+...+-... ..+.........+. ...+|.+...+.....-.
T Consensus 84 rksgK~A~ItvkR-prkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~ 162 (1027)
T KOG3580|consen 84 RKSGKVAAITVKR-PRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERA 162 (1027)
T ss_pred HhhccceeEEecc-cceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccc
Confidence 7444322 22222 233333322221100000 00000000000000 011222211110000000
Q ss_pred -ccCCCCCCCCC-CCCCCC-----Cccc-cCCCCCcceEEEEEec-CCCcccEEEecccccCCcEEEEEecCCCHHHHcC
Q psy14977 340 -YARSVIPMPPP-PPPPPR-----WNYS-ARSSKDTVRKVELNIE-PGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG 410 (469)
Q Consensus 340 -~~~~~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~V~L~~~-~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG 410 (469)
........+.. +....+ +..+ ........-+|.|.+. +...+|+.+. ..|||++|...+.|+++|
T Consensus 163 rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAardg 236 (1027)
T KOG3580|consen 163 RSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAARDG 236 (1027)
T ss_pred cccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhccccc------chhhhhhhcccchhhccC
Confidence 00000000000 000000 0000 0001112344555443 3448888765 579999999999999999
Q ss_pred -CCCCcEEEEEecEEecCcchHHHHHHHHHhCC-CccccccccCceeEEe
Q psy14977 411 -LLVSQLTLYQFIKEFLILSDHDKDFDTVISFS-HEQTSPSMYGVQATLL 458 (469)
Q Consensus 411 -Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g-~~~~~p~~~~~q~~ll 458 (469)
|+.||.||+|||+..++|+ +.++-.+|.++. +++..-. .+.|++|+
T Consensus 237 nlqEGDiiLkINGtvteNmS-LtDar~LIEkS~GKL~lvVl-RD~~qtLi 284 (1027)
T KOG3580|consen 237 NLQEGDIILKINGTVTENMS-LTDARKLIEKSRGKLQLVVL-RDSQQTLI 284 (1027)
T ss_pred CcccccEEEEECcEeecccc-chhHHHHHHhccCceEEEEE-ecCCceee
Confidence 9999999999999999999 999999996554 4333222 34455554
No 5
>KOG3605|consensus
Probab=99.55 E-value=1.7e-14 Score=152.37 Aligned_cols=162 Identities=19% Similarity=0.269 Sum_probs=129.9
Q ss_pred eEEEEEecCCCCcceEEEEEEc-CCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc
Q psy14977 204 VRTINMNRSQDANHGFGICVKG-GANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGY 281 (469)
Q Consensus 204 ~~~V~L~r~~~~~~GlGf~i~g-g~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~ 281 (469)
.+.|.|.|.+ +..||+.|+. |+...-..++|.++..++||+++| |-.||+|++|||..+.++.......+||.
T Consensus 646 qKEVvv~K~k--GEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~--- 720 (829)
T KOG3605|consen 646 QKEVVLEKHK--GEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG--- 720 (829)
T ss_pred cceeeeeccc--CceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhc---
Confidence 4678999986 4889998775 444333567899999999999999 99999999999999999999988888874
Q ss_pred ccceEeecCcEEEEEEECCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccc
Q psy14977 282 KEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSA 361 (469)
Q Consensus 282 ~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (469)
+++...|.|+|.+....
T Consensus 721 -----~KnQT~VkltiV~cpPV---------------------------------------------------------- 737 (829)
T KOG3605|consen 721 -----LKNQTAVKLNIVSCPPV---------------------------------------------------------- 737 (829)
T ss_pred -----ccccceEEEEEecCCCc----------------------------------------------------------
Confidence 67778889988775331
Q ss_pred CCCCCcceEEEEEecC-CCcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 362 RSSKDTVRKVELNIEP-GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 362 ~~~~~~~~~V~L~~~~-g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.+|.|.... ...|||++..| +|-++..||.|+|-|+|+|.+|++|||++|.-.. |+.+|++|..
T Consensus 738 -------~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~p-HekIV~lLs~ 802 (829)
T KOG3605|consen 738 -------TTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATP-HEKIVQLLSN 802 (829)
T ss_pred -------eEEEeecccchhhccceeeCc-------EeehhhcccchhccCceeeeeEEEECCceEEecc-HHHHHHHHHH
Confidence 122332111 24899999844 3677999999999999999999999999999999 9999999988
Q ss_pred CCCccccc
Q psy14977 441 FSHEQTSP 448 (469)
Q Consensus 441 ~g~~~~~p 448 (469)
+-..++..
T Consensus 803 aVGEIhMK 810 (829)
T KOG3605|consen 803 AVGEIHMK 810 (829)
T ss_pred hhhhhhhh
Confidence 75554443
No 6
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.47 E-value=1.1e-12 Score=138.72 Aligned_cols=140 Identities=24% Similarity=0.272 Sum_probs=88.4
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCCC
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHP 311 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~ 311 (469)
.+++|..|.+++||+++||+.||+|++|||+++.++. ++...+.. ...+..+.++|.|.........
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~--~~~~~l~~--------~~~g~~v~l~v~R~g~~~~~~v--- 323 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFA--DLRRAIGT--------LKPGKKVTLGILRKGKEKTITV--- 323 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHh--------cCCCCEEEEEEEECCEEEEEEE---
Confidence 5899999999999999999999999999999998764 33334321 2334555555554332100000
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEecc---
Q psy14977 312 LPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGG--- 388 (469)
Q Consensus 312 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~Gg--- 388 (469)
.+.. +.+ .. . . .....+|+.+..-
T Consensus 324 -------~l~~---~~~------~~-------------~----~--------------------~~~~~lGi~~~~l~~~ 350 (428)
T TIGR02037 324 -------TLGA---SPE------EQ-------------A----S--------------------SSNPFLGLTVANLSPE 350 (428)
T ss_pred -------EECc---CCC------cc-------------c----c--------------------ccccccceEEecCCHH
Confidence 0000 000 00 0 0 0001123322210
Q ss_pred -------cccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 389 -------VEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 389 -------~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.....|++|.+|.++++|+++||++||+|++|||+++.++. ++.++|+.
T Consensus 351 ~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~---d~~~~l~~ 406 (428)
T TIGR02037 351 IRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVA---ELRKVLDR 406 (428)
T ss_pred HHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHHh
Confidence 01125899999999999999999999999999999998855 66666664
No 7
>PRK10942 serine endoprotease; Provisional
Probab=99.42 E-value=6.7e-12 Score=134.23 Aligned_cols=142 Identities=16% Similarity=0.163 Sum_probs=89.0
Q ss_pred CCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCC
Q psy14977 231 GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNH 310 (469)
Q Consensus 231 ~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~ 310 (469)
..|++|..|.+++||+++||+.||+|++|||+++.++ .++...+.. ...+..+.++|.|........
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~--------~~~g~~v~l~v~R~G~~~~v~--- 376 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGT--------MPVGSKLTLGLLRDGKPVNVN--- 376 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHh--------cCCCCEEEEEEEECCeEEEEE---
Confidence 3589999999999999999999999999999999876 444444321 233445555555433210000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEeccc-
Q psy14977 311 PLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGV- 389 (469)
Q Consensus 311 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~Gg~- 389 (469)
..+.. .. .. . . . .....+|+....-.
T Consensus 377 -------v~l~~-----~~-------~~----~--------~--~--------------------~~~~~lGl~g~~l~~ 403 (473)
T PRK10942 377 -------VELQQ-----SS-------QN----Q--------V--D--------------------SSNIFNGIEGAELSN 403 (473)
T ss_pred -------EEeCc-----Cc-------cc----c--------c--c--------------------cccccccceeeeccc
Confidence 00000 00 00 0 0 0 00001222111000
Q ss_pred -ccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 390 -EYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 390 -e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
....|++|.+|.++++|+++||++||+|++|||+++.++. ++.+++++.
T Consensus 404 ~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~---dl~~~l~~~ 453 (473)
T PRK10942 404 KGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIA---ELRKILDSK 453 (473)
T ss_pred ccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHHhC
Confidence 1124899999999999999999999999999999999855 777777663
No 8
>PRK10139 serine endoprotease; Provisional
Probab=99.39 E-value=8e-12 Score=133.05 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhh---cCcccceEeecCcEEEEEEECCCCCCCCC
Q psy14977 231 GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFF---EGYKEGQMLKSNRELSMTVRSPSIPPQAP 307 (469)
Q Consensus 231 ~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~---~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~ 307 (469)
..|++|..|.+++||+++||+.||+|++|||+++.++ .++...|.. .....++|.|+++.+.+.+.........
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~- 365 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSS- 365 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcc-
Confidence 3589999999999999999999999999999999876 455444432 1111244455554444444321100000
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEec
Q psy14977 308 RNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRG 387 (469)
Q Consensus 308 ~~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~G 387 (469)
. . . . ...+. ..|+.+..
T Consensus 366 --------~-----------~------~--------~-------~~~~~-----------------------~~g~~l~~ 382 (455)
T PRK10139 366 --------A-----------S------A--------E-------MITPA-----------------------LQGATLSD 382 (455)
T ss_pred --------c-----------c------c--------c-------ccccc-----------------------ccccEecc
Confidence 0 0 0 0 00000 00111110
Q ss_pred c--cccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 388 G--VEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 388 g--~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
. .....|++|..|.++++|+++||++||+|++|||+++.++. ++.++|++.
T Consensus 383 ~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~---~~~~~l~~~ 435 (455)
T PRK10139 383 GQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIA---EMRKVLAAK 435 (455)
T ss_pred cccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHHhC
Confidence 0 01124889999999999999999999999999999998855 777777653
No 9
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.39 E-value=2.5e-12 Score=136.80 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=89.1
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCCCC
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPL 312 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~~ 312 (469)
..+|..|.++|||++||||.||+|++|||+++.+++. +...+.. ...++++.+++.|.............
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~--l~~~v~~--------~~~g~~v~v~v~R~gk~~~~~v~l~~ 196 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDA--VRLALVS--------KIGDESTTITVAPFGSDQRRDKTLDL 196 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHh--------hccCCceEEEEEeCCccceEEEEecc
Confidence 3478999999999999999999999999999998754 3222210 23456677777765442110000000
Q ss_pred CCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEecccccC
Q psy14977 313 PPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYN 392 (469)
Q Consensus 313 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~Gg~e~~ 392 (469)
. +... . . . . ......+|+... ...
T Consensus 197 ---~--------------------~~~~-~------------~-----------~-~-----~~~~~~lGl~~~---~~~ 220 (449)
T PRK10779 197 ---R--------------------HWAF-E------------P-----------D-K-----QDPVSSLGIRPR---GPQ 220 (449)
T ss_pred ---c--------------------cccc-C------------c-----------c-c-----cchhhccccccc---CCC
Confidence 0 0000 0 0 0 0 000023555332 122
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.+..|.+|.++|+|+++||++||+|++|||+++.++. ++.+.++.
T Consensus 221 ~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~---dl~~~l~~ 265 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQ---TFVTLVRD 265 (449)
T ss_pred cCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHHh
Confidence 3578999999999999999999999999999998855 66666654
No 10
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.36 E-value=3.6e-12 Score=103.49 Aligned_cols=72 Identities=33% Similarity=0.403 Sum_probs=65.0
Q ss_pred EEEEecCCCcccEEEecccccC-CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 371 VELNIEPGQSLGLMIRGGVEYN-LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 371 V~L~~~~g~~LGfsi~Gg~e~~-~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
|+|.++....|||.+.++.+.. .++||..|.++++|+++||++||+|++|||+++.+++ +++++++|+....
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~-~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMS-HDEVVQLLKSASN 74 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSB-HHHHHHHHHHSTS
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCC-HHHHHHHHHCCCC
Confidence 5676666679999999887643 6999999999999999999999999999999999999 9999999999865
No 11
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.35 E-value=4.8e-12 Score=102.77 Aligned_cols=80 Identities=38% Similarity=0.693 Sum_probs=68.7
Q ss_pred EEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccce
Q psy14977 206 TINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQ 285 (469)
Q Consensus 206 ~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~ 285 (469)
+|+|.|.. ..+|||++.++.+....+++|..|.++++|+++||++||+|++|||+++.++++++++.+|+
T Consensus 1 ~v~l~k~~--~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~-------- 70 (81)
T PF00595_consen 1 QVTLEKSG--NGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLK-------- 70 (81)
T ss_dssp EEEEEEST--TSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHH--------
T ss_pred CEEEEeCC--CCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHH--------
Confidence 47888863 58999999998874226999999999999999999999999999999999999999999966
Q ss_pred EeecCcEEEEEE
Q psy14977 286 MLKSNRELSMTV 297 (469)
Q Consensus 286 Ilr~g~~v~l~V 297 (469)
.....++|+|
T Consensus 71 --~~~~~v~L~V 80 (81)
T PF00595_consen 71 --SASNPVTLTV 80 (81)
T ss_dssp --HSTSEEEEEE
T ss_pred --CCCCcEEEEE
Confidence 3344777776
No 12
>KOG3550|consensus
Probab=99.25 E-value=1.1e-11 Score=110.38 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=71.1
Q ss_pred ceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC---
Q psy14977 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH--- 443 (469)
Q Consensus 368 ~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~--- 443 (469)
.+.|+|. +.+.+|||.+.||.+.+.+|||..|.||+.|++-| |+-||++|.|||++|.+-. |+.||++||.+..
T Consensus 91 prvvelp-ktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~-hekavellkaa~gsvk 168 (207)
T KOG3550|consen 91 PRVVELP-KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEH-HEKAVELLKAAVGSVK 168 (207)
T ss_pred CceeecC-ccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchh-hHHHHHHHHHhcCcEE
Confidence 4667763 34569999999999999999999999999999999 9999999999999999999 9999999998766
Q ss_pred --ccccccc
Q psy14977 444 --EQTSPSM 450 (469)
Q Consensus 444 --~~~~p~~ 450 (469)
+.|.|..
T Consensus 169 lvvrytpkv 177 (207)
T KOG3550|consen 169 LVVRYTPKV 177 (207)
T ss_pred EEEecChHH
Confidence 4466643
No 13
>KOG3551|consensus
Probab=99.23 E-value=1.5e-11 Score=123.85 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=82.1
Q ss_pred cceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC--
Q psy14977 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH-- 443 (469)
Q Consensus 367 ~~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~-- 443 (469)
..|.|.+.+...++|||+|+||.+...+|.|.+|++|=+|++.+ |..||.||.|||.++.+.+ |+|||+.||.+++
T Consensus 84 ~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~At-HdeAVqaLKraGkeV 162 (506)
T KOG3551|consen 84 AERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDAT-HDEAVQALKRAGKEV 162 (506)
T ss_pred ccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcc-hHHHHHHHHhhCcee
Confidence 34889998888889999999999999999999999999999999 9999999999999999999 9999999999998
Q ss_pred ---ccccccc--cCceeEEeec
Q psy14977 444 ---EQTSPSM--YGVQATLLSS 460 (469)
Q Consensus 444 ---~~~~p~~--~~~q~~llss 460 (469)
++|.... |-+++.+.|+
T Consensus 163 ~levKy~REvtPy~kk~sivs~ 184 (506)
T KOG3551|consen 163 LLEVKYMREVTPYFKKESIVSE 184 (506)
T ss_pred eeeeeeehhcchhhccCccccc
Confidence 4465555 6666655543
No 14
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.20 E-value=1.4e-10 Score=122.57 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=84.4
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCCC
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHP 311 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~ 311 (469)
.+.+|..|.+++||+++||+.||+|++|||+++.++.+ +.+.+.. .. ..+.+++.+.....
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~d--l~~~ia~--------~~--~~v~~~I~r~g~~~------- 188 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKD--VRQQIAD--------IA--GEPMVEILAERENW------- 188 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHh--------hc--ccceEEEEEecCce-------
Confidence 47889999999999999999999999999999987744 3333220 22 45556665543210
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEeccccc
Q psy14977 312 LPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY 391 (469)
Q Consensus 312 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~Gg~e~ 391 (469)
.+++ .+++... ..
T Consensus 189 ----------------------------------------------------------~l~v------~l~~~~~---~~ 201 (420)
T TIGR00054 189 ----------------------------------------------------------TFEV------MKELIPR---GP 201 (420)
T ss_pred ----------------------------------------------------------Eecc------cccceec---CC
Confidence 0000 0111111 01
Q ss_pred CCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 392 NLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 392 ~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
..++.|.+|.++++|+++||++||+|++|||+++.++. ++.+.++.
T Consensus 202 ~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~---dl~~~l~~ 247 (420)
T TIGR00054 202 KIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWT---DFVSAVKE 247 (420)
T ss_pred CcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHHh
Confidence 13678999999999999999999999999999998855 66666655
No 15
>KOG3550|consensus
Probab=99.12 E-value=1.3e-10 Score=103.51 Aligned_cols=84 Identities=32% Similarity=0.625 Sum_probs=73.8
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGY 281 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~ 281 (469)
.+|.|.|.|.. .||||.|-||++. +.+|||++|.||+.|++.| |+.||++|+|||..|++-.|+.++.++|
T Consensus 90 hprvvelpktd---eglgfnvmggkeq-nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellk---- 161 (207)
T KOG3550|consen 90 HPRVVELPKTD---EGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK---- 161 (207)
T ss_pred CCceeecCccc---cccceeeccCccc-CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHH----
Confidence 46788888875 8999999999998 8999999999999999999 9999999999999999999999999976
Q ss_pred ccceEeecCcEEEEEEECC
Q psy14977 282 KEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 282 ~~~~Ilr~g~~v~l~V~~~ 300 (469)
..-..|.|.|.-.
T Consensus 162 ------aa~gsvklvvryt 174 (207)
T KOG3550|consen 162 ------AAVGSVKLVVRYT 174 (207)
T ss_pred ------HhcCcEEEEEecC
Confidence 2245677777643
No 16
>KOG3551|consensus
Probab=99.10 E-value=6.3e-10 Score=112.27 Aligned_cols=85 Identities=31% Similarity=0.545 Sum_probs=77.6
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGY 281 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~ 281 (469)
..|.|+++|.. .+||||+|+||+++ .++|+|++|.+|-.|++.+ |..||.||+|||.++.+.+|+++|+.+|
T Consensus 84 ~~R~V~V~K~d--~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK---- 156 (506)
T KOG3551|consen 84 AERRVRVVKQD--AGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK---- 156 (506)
T ss_pred ccceeEEEEec--CCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH----
Confidence 34889999986 48999999999998 8999999999999999999 9999999999999999999999999977
Q ss_pred ccceEeecCcEEEEEEECC
Q psy14977 282 KEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 282 ~~~~Ilr~g~~v~l~V~~~ 300 (469)
|.|+.|.+.|+--
T Consensus 157 ------raGkeV~levKy~ 169 (506)
T KOG3551|consen 157 ------RAGKEVLLEVKYM 169 (506)
T ss_pred ------hhCceeeeeeeee
Confidence 7789998887643
No 17
>KOG3549|consensus
Probab=99.00 E-value=4.1e-10 Score=112.22 Aligned_cols=84 Identities=26% Similarity=0.282 Sum_probs=76.7
Q ss_pred cceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCCcc
Q psy14977 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSHEQ 445 (469)
Q Consensus 367 ~~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~~~ 445 (469)
..|.|+|..++-++||++|+||.+.+.+|+|.+|.++-+|+..| |-+||-||+|||+.|+... |+|+|++|+++|+.+
T Consensus 54 ~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~-HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 54 KERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACP-HEEVVNILRNAGDEV 132 (505)
T ss_pred CceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCC-hHHHHHHHHhcCCEE
Confidence 35889999888899999999999999999999999999999999 9999999999999999999 999999999999955
Q ss_pred cccccc
Q psy14977 446 TSPSMY 451 (469)
Q Consensus 446 ~~p~~~ 451 (469)
..-..|
T Consensus 133 tlTV~~ 138 (505)
T KOG3549|consen 133 TLTVKH 138 (505)
T ss_pred EEEeHh
Confidence 443333
No 18
>KOG3553|consensus
Probab=98.99 E-value=9.3e-10 Score=91.64 Aligned_cols=61 Identities=31% Similarity=0.471 Sum_probs=56.5
Q ss_pred cccEEEeccccc----------CCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 380 SLGLMIRGGVEY----------NLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 380 ~LGfsi~Gg~e~----------~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
.+||.|-||.+. +.||||++|.+||||+.+|||.+|.||+|||-++.=++ |++|+..|++.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvT-Hd~Avk~i~k~ 106 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVT-HDQAVKRITKE 106 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEE-hHHHHHHhhHh
Confidence 699999998872 35999999999999999999999999999999999999 99999999874
No 19
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=3.8e-09 Score=82.83 Aligned_cols=68 Identities=38% Similarity=0.645 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEE
Q psy14977 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTV 297 (469)
Q Consensus 218 GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V 297 (469)
+|||.+....+ .+++|..|.+++||+.+||++||+|++|||+++.+++++++.++|+ -..+..+.|++
T Consensus 2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~---------~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE---GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLK---------KEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC---CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---------hCCCCeEEEEE
Confidence 58999987664 3899999999999999999999999999999999999999999966 22256777765
No 20
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.98 E-value=4.4e-09 Score=84.76 Aligned_cols=73 Identities=32% Similarity=0.452 Sum_probs=62.1
Q ss_pred eEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 369 ~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
+.+.+.......|||.+....+...+++|..|.++++|+++||++||+|++|||+++.+++ ++++++.++...
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~-~~~~~~~l~~~~ 74 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLT-HEEAVELLKNSG 74 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccC-HHHHHHHHHhCC
Confidence 3456655545799999987654446899999999999999999999999999999999888 999999998754
No 21
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.97 E-value=7.1e-09 Score=83.54 Aligned_cols=70 Identities=44% Similarity=0.866 Sum_probs=60.6
Q ss_pred EEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 205 ~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
+.+.|.+.. ..+|||.+.+..+. ..+++|..|.++++|+++||++||+|++|||+++..++++++.+.++
T Consensus 2 ~~~~l~~~~--~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~ 71 (82)
T cd00992 2 RTVTLRKDP--GGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLK 71 (82)
T ss_pred EEEEEEeCC--CCCcCEEEeCcccC-CCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHH
Confidence 467777773 47899999887643 45899999999999999999999999999999999999999999955
No 22
>KOG3549|consensus
Probab=98.94 E-value=1.2e-09 Score=108.83 Aligned_cols=86 Identities=36% Similarity=0.578 Sum_probs=77.5
Q ss_pred eEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc
Q psy14977 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282 (469)
Q Consensus 204 ~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~ 282 (469)
.|+|+|.|.+ -+|||++|+||.+. +.+++|++|.++-.|+..| |-+||-||+|||..|..+.|+++++++|
T Consensus 55 eRtVtirRQ~--vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLR----- 126 (505)
T KOG3549|consen 55 ERTVTIRRQK--VGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILR----- 126 (505)
T ss_pred ceeEEEEeee--cCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHH-----
Confidence 4899999986 48999999999998 8999999999999999999 9999999999999999999999999954
Q ss_pred cceEeecCcEEEEEEECCCC
Q psy14977 283 EGQMLKSNRELSMTVRSPSI 302 (469)
Q Consensus 283 ~~~Ilr~g~~v~l~V~~~~~ 302 (469)
..|+.|+|+|..-..
T Consensus 127 -----NAGdeVtlTV~~lr~ 141 (505)
T KOG3549|consen 127 -----NAGDEVTLTVKHLRA 141 (505)
T ss_pred -----hcCCEEEEEeHhhhc
Confidence 338999999876543
No 23
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.87 E-value=4.3e-08 Score=79.04 Aligned_cols=82 Identities=37% Similarity=0.628 Sum_probs=65.6
Q ss_pred EEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccc
Q psy14977 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEG 284 (469)
Q Consensus 205 ~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~ 284 (469)
..+++.+.. ..|||.+...... ..+++|..|.++++|+++||++||+|++|||+.+.++++.+....++
T Consensus 3 ~~~~~~~~~---~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~------- 71 (85)
T smart00228 3 RLVELEKGG---GGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLK------- 71 (85)
T ss_pred EEEEEEECC---CcccEEEECCCCC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-------
Confidence 456777764 7899998875532 25899999999999999999999999999999999999988877744
Q ss_pred eEeecCcEEEEEEECC
Q psy14977 285 QMLKSNRELSMTVRSP 300 (469)
Q Consensus 285 ~Ilr~g~~v~l~V~~~ 300 (469)
..+..+.+++.+.
T Consensus 72 ---~~~~~~~l~i~r~ 84 (85)
T smart00228 72 ---KAGGKVTLTVLRG 84 (85)
T ss_pred ---hCCCeEEEEEEeC
Confidence 2344777777653
No 24
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.83 E-value=1.4e-08 Score=79.60 Aligned_cols=60 Identities=30% Similarity=0.357 Sum_probs=53.8
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.|||.+....+ .+++|..|.++++|+++||++||+|++|||+++.+++ ++++.++|+...
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~~~ 61 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLT-LEDVAELLKKEV 61 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhhCC
Confidence 57888886553 4899999999999999999999999999999999999 999999998763
No 25
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.79 E-value=2.5e-08 Score=81.22 Aligned_cols=72 Identities=33% Similarity=0.504 Sum_probs=51.9
Q ss_pred eEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEE
Q psy14977 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTV 297 (469)
Q Consensus 218 GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V 297 (469)
++|+.+....+ ..+++|..|.+++||+++||+.||+|++|||+++.++ .++...+.. ...+..+.|++
T Consensus 2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--------~~~g~~v~l~v 69 (82)
T PF13180_consen 2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSK--------GKPGDTVTLTV 69 (82)
T ss_dssp E-SEEEEECSC--SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHC--------SSTTSEEEEEE
T ss_pred EECeEEEEccC--CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHh--------CCCCCEEEEEE
Confidence 46777766443 3589999999999999999999999999999999655 555555431 34456666666
Q ss_pred ECCC
Q psy14977 298 RSPS 301 (469)
Q Consensus 298 ~~~~ 301 (469)
.|..
T Consensus 70 ~R~g 73 (82)
T PF13180_consen 70 LRDG 73 (82)
T ss_dssp EETT
T ss_pred EECC
Confidence 6543
No 26
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.77 E-value=6.5e-08 Score=78.73 Aligned_cols=71 Identities=31% Similarity=0.522 Sum_probs=58.2
Q ss_pred ceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEE
Q psy14977 217 HGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMT 296 (469)
Q Consensus 217 ~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~ 296 (469)
.++||.+.... .+++|..|.+++||+++||++||+|++|||.++.++++.++...++ ...+..+.++
T Consensus 2 ~~lG~~~~~~~----~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~---------~~~~~~i~l~ 68 (85)
T cd00988 2 GGIGLELKYDD----GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLR---------GKAGTKVRLT 68 (85)
T ss_pred eEEEEEEEEcC----CeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhc---------CCCCCEEEEE
Confidence 57888886533 3799999999999999999999999999999999998888887754 1235677777
Q ss_pred EECC
Q psy14977 297 VRSP 300 (469)
Q Consensus 297 V~~~ 300 (469)
+.+.
T Consensus 69 v~r~ 72 (85)
T cd00988 69 LKRG 72 (85)
T ss_pred EEcC
Confidence 7764
No 27
>KOG3553|consensus
Probab=98.76 E-value=2.2e-09 Score=89.41 Aligned_cols=72 Identities=42% Similarity=0.655 Sum_probs=61.2
Q ss_pred EEEEecCCC------CcceEEEEEEcCCCCC---------CCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy14977 206 TINMNRSQD------ANHGFGICVKGGANNP---------GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHE 270 (469)
Q Consensus 206 ~V~L~r~~~------~~~GlGf~i~gg~~~~---------~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~ 270 (469)
.|+|+|... .+.-+||.|-||-|.. ..||||.+|.+|+||+.|||+.+|+|++|||-++.-++|+
T Consensus 18 ~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd 97 (124)
T KOG3553|consen 18 RVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHD 97 (124)
T ss_pred EEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhH
Confidence 466776541 2235899999998762 5799999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy14977 271 EALKMCF 277 (469)
Q Consensus 271 ~av~~ir 277 (469)
++++.|+
T Consensus 98 ~Avk~i~ 104 (124)
T KOG3553|consen 98 QAVKRIT 104 (124)
T ss_pred HHHHHhh
Confidence 9999954
No 28
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.74 E-value=8.8e-08 Score=77.24 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=59.1
Q ss_pred EEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 370 KVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 370 ~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.+++.+.. ..|||.+........+++|..|.++++|+++||++||+|++|||+++.+++ +.+++..++..+
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~-~~~~~~~~~~~~ 74 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLT-HLEAVDLLKKAG 74 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHhCC
Confidence 45555444 789999886543226899999999999999999999999999999999999 888888887754
No 29
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=3.1e-08 Score=104.09 Aligned_cols=95 Identities=28% Similarity=0.462 Sum_probs=78.8
Q ss_pred CCCCCCCCcccCCCCCeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy14977 188 HPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGI 267 (469)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~ 267 (469)
||++.|+++.++..+...+ .++..|+|+++.-..+ .++.|..+.+++||+++||++||+|+.|||+++.++
T Consensus 77 Dp~s~y~~~e~~~~~~~~~------~~~~~GiG~~i~~~~~---~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~ 147 (406)
T COG0793 77 DPHSTYLDPEDAAEFRTDT------SGEFGGIGIELQMEDI---GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGV 147 (406)
T ss_pred CCcccccCHHHHHHhhhhc------cccccceeEEEEEecC---CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCC
Confidence 9999999999888776655 3467899999987663 379999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcCcccceEeecCcEEEEEEECC
Q psy14977 268 SHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 268 s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~ 300 (469)
+.++++..|| -+.|..|+|++.|.
T Consensus 148 ~~~~av~~ir---------G~~Gt~V~L~i~r~ 171 (406)
T COG0793 148 SLDEAVKLIR---------GKPGTKVTLTILRA 171 (406)
T ss_pred CHHHHHHHhC---------CCCCCeEEEEEEEc
Confidence 9999999987 34455555555553
No 30
>KOG3571|consensus
Probab=98.61 E-value=6.8e-08 Score=100.63 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=67.6
Q ss_pred CcceEEEEEecCCCcccEEEecccc--cCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 366 DTVRKVELNIEPGQSLGLMIRGGVE--YNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 366 ~~~~~V~L~~~~g~~LGfsi~Gg~e--~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
...-.|.|++++-.-|||+|+|-.. .+.||||..|.++|+.+.+| |.+||.||+||.+++.+++ .+|||..|+.+-
T Consensus 248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmS-Nd~AVrvLREaV 326 (626)
T KOG3571|consen 248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMS-NDQAVRVLREAV 326 (626)
T ss_pred eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcC-chHHHHHHHHHh
Confidence 3566777877877899999998332 35799999999999999999 9999999999999999999 999999999875
Q ss_pred C
Q psy14977 443 H 443 (469)
Q Consensus 443 ~ 443 (469)
+
T Consensus 327 ~ 327 (626)
T KOG3571|consen 327 S 327 (626)
T ss_pred c
Confidence 5
No 31
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.53 E-value=2.6e-07 Score=96.91 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCCCCCCCcccCCCCCeEEEEEecCCCCcceEEEEEEcCCCC--CCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC
Q psy14977 188 HPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANN--PGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265 (469)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~--~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~ 265 (469)
|||+.|+.+.++..+.... .+...|+|+.+.-.... ...+++|..|.+++||+++||+.||+|++|||+++.
T Consensus 62 D~hs~y~~~~~~~~~~~~~------~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~ 135 (389)
T PLN00049 62 DPFTRFLEPEKFKSLRSGT------KGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTE 135 (389)
T ss_pred CCcccCcCHHHHHHHHHhc------cCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECC
Confidence 8899998877665433221 22357899988643321 113799999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcCcc--cceEeecCcEEEEEEEC
Q psy14977 266 GISHEEALKMCFFEGYK--EGQMLKSNRELSMTVRS 299 (469)
Q Consensus 266 ~~s~~~av~~ir~~~~~--~~~Ilr~g~~v~l~V~~ 299 (469)
+++..++..+++..... .++|.+.+....++|.+
T Consensus 136 ~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r 171 (389)
T PLN00049 136 GLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR 171 (389)
T ss_pred CCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence 98888887776522211 25555555555555554
No 32
>KOG3542|consensus
Probab=98.52 E-value=6e-08 Score=103.63 Aligned_cols=76 Identities=28% Similarity=0.280 Sum_probs=70.2
Q ss_pred cceEEEEEec-CCCcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 367 TVRKVELNIE-PGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 367 ~~~~V~L~~~-~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
..+.|.|++. +...|-|.+.||.+.+.||||..|.||+-|+++||+-||+|++|||+++.+++ ...|.++|++..+
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis-~~KA~eiLrnnth 611 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENIS-AKKAEEILRNNTH 611 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhh-HHHHHHHhcCCce
Confidence 4577888773 45599999999999999999999999999999999999999999999999999 9999999999887
No 33
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.51 E-value=2.7e-07 Score=75.12 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=44.6
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.||+.+..-.. ..+++|..|.+++||+++||++||+|++|||+++.++. ++...|..
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l~~ 58 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSE---DLVNILSK 58 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHH---HHHHHHHC
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHH---HHHHHHHh
Confidence 46777663331 35999999999999999999999999999999997754 77777754
No 34
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.46 E-value=4e-07 Score=93.50 Aligned_cols=80 Identities=33% Similarity=0.510 Sum_probs=61.7
Q ss_pred CCCCCCCCcccCCCCCeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy14977 188 HPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGI 267 (469)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~ 267 (469)
|||+.|+++.+...+.... .+...++|+.+.... .+++|..|.+++||+++||+.||+|++|||+++.++
T Consensus 28 D~h~~~~~~~~~~~~~~~~------~~~~~~lG~~~~~~~----~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~ 97 (334)
T TIGR00225 28 DPYTRYLSPETAKSFSETT------SGSLEGIGIQVGMDD----GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGM 97 (334)
T ss_pred CCCccccCHHHHHHHHHhc------cCceEEEEEEEEEEC----CEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCC
Confidence 8899998876654332111 112468898886532 279999999999999999999999999999999998
Q ss_pred CHHHHHHHhh
Q psy14977 268 SHEEALKMCF 277 (469)
Q Consensus 268 s~~~av~~ir 277 (469)
+..++...++
T Consensus 98 ~~~~~~~~l~ 107 (334)
T TIGR00225 98 SLDDAVALIR 107 (334)
T ss_pred CHHHHHHhcc
Confidence 7777777754
No 35
>KOG1892|consensus
Probab=98.46 E-value=2.5e-07 Score=102.05 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=71.7
Q ss_pred EEEEEecCCCcccEEEecccc---cCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCCcc
Q psy14977 370 KVELNIEPGQSLGLMIRGGVE---YNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSHEQ 445 (469)
Q Consensus 370 ~V~L~~~~g~~LGfsi~Gg~e---~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~~~ 445 (469)
-.+|++++.+++|++|+.-.. ...||||++|++|++|+.+| |..||++|.|||+++.+++ .+.|.+++...+.++
T Consensus 934 i~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGis-QErAA~lmtrtg~vV 1012 (1629)
T KOG1892|consen 934 IITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGIS-QERAARLMTRTGNVV 1012 (1629)
T ss_pred eEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCccccccc-HHHHHHHHhccCCeE
Confidence 344455666888888764332 35799999999999999999 9999999999999999999 999999999998866
Q ss_pred cccc-----ccCceeEEeecCCCc
Q psy14977 446 TSPS-----MYGVQATLLSSSSGS 464 (469)
Q Consensus 446 ~~p~-----~~~~q~~llss~~~~ 464 (469)
+.-. .|.--++||-.-++.
T Consensus 1013 ~leVaKqgAiyhGLatlL~qpsP~ 1036 (1629)
T KOG1892|consen 1013 HLEVAKQGAIYHGLATLLGQPSPT 1036 (1629)
T ss_pred EEehhhhhhHHHHHHHHhcCCCcc
Confidence 4322 144444555444443
No 36
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.46 E-value=4.4e-07 Score=100.47 Aligned_cols=93 Identities=17% Similarity=0.310 Sum_probs=70.5
Q ss_pred CCCCCCCCcccCCCCCeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHc-CCCCCCEEEEEC--C---
Q psy14977 188 HPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA-GLRPGDSILQVN--G--- 261 (469)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~a-GL~~GD~Il~VN--G--- 261 (469)
|||+.|+++.+...+.... .+...|+|+.+....+ .++|..|.+|+||+++ ||++||+|++|| |
T Consensus 221 DphT~Y~sp~e~e~f~~~~------~~~~~GIGa~l~~~~~----~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~ 290 (667)
T PRK11186 221 DPHTSYLSPRNAEQFNTEM------NLSLEGIGAVLQMDDD----YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPI 290 (667)
T ss_pred CCCccccChHHHHHhhhcc------CCceeEEEEEEEEeCC----eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcc
Confidence 9999999988776554422 2235789999875433 6899999999999998 799999999999 4
Q ss_pred EEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEEC
Q psy14977 262 IPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRS 299 (469)
Q Consensus 262 ~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~ 299 (469)
.++.+++.++++.+|| -..|..|.|+|.+
T Consensus 291 ~dv~g~~~~~vv~lir---------G~~Gt~V~LtV~r 319 (667)
T PRK11186 291 VDVIGWRLDDVVALIK---------GPKGSKVRLEILP 319 (667)
T ss_pred cccccCCHHHHHHHhc---------CCCCCEEEEEEEe
Confidence 3566888899999976 2335555555554
No 37
>KOG1892|consensus
Probab=98.45 E-value=3.4e-07 Score=100.96 Aligned_cols=88 Identities=25% Similarity=0.553 Sum_probs=74.9
Q ss_pred CCCCeEEEEEecCCCCcceEEEEEEcCCCC--CCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 200 DQLPVRTINMNRSQDANHGFGICVKGGANN--PGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 200 ~~~~~~~V~L~r~~~~~~GlGf~i~gg~~~--~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
.+..+.+|+|.|. .|+|++|+..+.. ...||||+.|.+|++|+.+| |+.||++|.|||+.+-+++.+.+..+|
T Consensus 930 ~~pei~~vtL~Kn----nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lm 1005 (1629)
T KOG1892|consen 930 KEPEIITVTLKKN----NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLM 1005 (1629)
T ss_pred cCCceEEEEEecc----CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHH
Confidence 3455788999997 6888888765543 35899999999999999999 999999999999999999999999984
Q ss_pred hhcCcccceEeecCcEEEEEEECCC
Q psy14977 277 FFEGYKEGQMLKSNRELSMTVRSPS 301 (469)
Q Consensus 277 r~~~~~~~~Ilr~g~~v~l~V~~~~ 301 (469)
.+.+..|.|.|....
T Consensus 1006 ----------trtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 1006 ----------TRTGNVVHLEVAKQG 1020 (1629)
T ss_pred ----------hccCCeEEEehhhhh
Confidence 588889999887653
No 38
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=5e-07 Score=73.48 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=50.0
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
+||+.+... ..+++|..|.++++|+++||++||+|++|||+++.+++ ++++.++++.
T Consensus 3 ~lG~~~~~~---~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~-~~~~~~~l~~ 59 (85)
T cd00988 3 GIGLELKYD---DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLS-LEDVVKLLRG 59 (85)
T ss_pred EEEEEEEEc---CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHhcC
Confidence 578877632 36899999999999999999999999999999999997 7899888865
No 39
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=1.5e-06 Score=69.96 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC
Q psy14977 219 FGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTG 266 (469)
Q Consensus 219 lGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~ 266 (469)
+|+.+... ..+++|..|.++++|+++||++||+|++|||+++.+
T Consensus 3 ~G~~~~~~----~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLDKE----EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEEcc----CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH
Confidence 45655432 237999999999999999999999999999999976
No 40
>KOG3571|consensus
Probab=98.32 E-value=1.4e-06 Score=91.04 Aligned_cols=94 Identities=23% Similarity=0.417 Sum_probs=72.7
Q ss_pred CCeEEEEEecCCCCcceEEEEEEcCCCC-CCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhc
Q psy14977 202 LPVRTINMNRSQDANHGFGICVKGGANN-PGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFE 279 (469)
Q Consensus 202 ~~~~~V~L~r~~~~~~GlGf~i~gg~~~-~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~ 279 (469)
+..+.|++.-.-+...-|||+|+|.... +..||||..|.++++.+.+| +.+||.||+||.+++++++.++||..||.
T Consensus 246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE- 324 (626)
T KOG3571|consen 246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE- 324 (626)
T ss_pred cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH-
Confidence 3344444444443445699999995433 35799999999999999999 99999999999999999999999999884
Q ss_pred CcccceEeecCcEEEEEEECCCC
Q psy14977 280 GYKEGQMLKSNRELSMTVRSPSI 302 (469)
Q Consensus 280 ~~~~~~Ilr~g~~v~l~V~~~~~ 302 (469)
+......+.|+|.....
T Consensus 325 ------aV~~~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 325 ------AVSRPGPIKLTVAKCWD 341 (626)
T ss_pred ------HhccCCCeEEEEeeccC
Confidence 34445557777766544
No 41
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=2.4e-06 Score=69.13 Aligned_cols=61 Identities=34% Similarity=0.410 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCC
Q psy14977 231 GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301 (469)
Q Consensus 231 ~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~ 301 (469)
..|++|..|.+++||+++||+.||+|++|||+++.++ .++...++. ...+..+.+++.|..
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~--------~~~g~~v~l~v~r~g 69 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKP--------TKPGEVITVTVLPST 69 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhc--------CCCCCEEEEEEEECC
Confidence 3589999999999999999999999999999999865 556666431 122556666666543
No 42
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=4.4e-06 Score=66.80 Aligned_cols=57 Identities=32% Similarity=0.448 Sum_probs=44.3
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECC
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~ 300 (469)
.++|..|.++++|+++||+.||+|++|||+++.++ +++...++. ..+..+.+++.+.
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~---------~~~~~~~l~v~r~ 69 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQE---------NPGKPLTLTVERN 69 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHH---------CCCceEEEEEEEC
Confidence 68999999999999999999999999999999865 556566442 1244566666553
No 43
>KOG3651|consensus
Probab=98.24 E-value=2.9e-06 Score=83.81 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=67.7
Q ss_pred eEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 369 ~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
..|+|+++..+-+|++|-||..+=+=+||.+|+.+.||+++| |+.||.|++|||++|.+.+ --++.++|+-+.+
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGkt-KveVAkmIQ~~~~ 80 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKT-KVEVAKMIQVSLN 80 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCcc-HHHHHHHHHHhcc
Confidence 567888777789999999998887789999999999999999 9999999999999999999 8899999987766
No 44
>KOG3542|consensus
Probab=98.24 E-value=1.9e-06 Score=92.43 Aligned_cols=85 Identities=33% Similarity=0.602 Sum_probs=75.2
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~ 282 (469)
.+|.|.|.|.. ....+=|.+.||.+. +-+|||..|.||+-|+++||+.||+|++|||++.++++...++.+
T Consensus 535 K~RqviLtk~s-re~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~ei------- 605 (1283)
T KOG3542|consen 535 KPRQVILTKAS-REDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEI------- 605 (1283)
T ss_pred cceeEEEeccc-ccCCceeEeccCccc-cceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHH-------
Confidence 46789999854 346799999999987 889999999999999999999999999999999999999999988
Q ss_pred cceEeecCcEEEEEEECC
Q psy14977 283 EGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 283 ~~~Ilr~g~~v~l~V~~~ 300 (469)
+++..++.|+|+.+
T Consensus 606 ----LrnnthLtltvKtN 619 (1283)
T KOG3542|consen 606 ----LRNNTHLTLTVKTN 619 (1283)
T ss_pred ----hcCCceEEEEEecc
Confidence 78888888888754
No 45
>KOG3606|consensus
Probab=98.22 E-value=1.8e-06 Score=83.99 Aligned_cols=87 Identities=26% Similarity=0.538 Sum_probs=73.6
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCC--------CCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANN--------PGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEAL 273 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~--------~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av 273 (469)
.-|.|.|.|- ++...|||-|+.|..- ...||||+++.||+.|+..| |.+.|.||+|||..|.+.+.+|+.
T Consensus 158 tHRRVRL~kh-G~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVT 236 (358)
T KOG3606|consen 158 THRRVRLHKH-GSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVT 236 (358)
T ss_pred hhhheehhhc-CCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHH
Confidence 3467888884 4667899999876532 15799999999999999999 999999999999999999999999
Q ss_pred HHhhhcCcccceEeecCcEEEEEEECC
Q psy14977 274 KMCFFEGYKEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 274 ~~ir~~~~~~~~Ilr~g~~v~l~V~~~ 300 (469)
.+| ..+...+.++|+..
T Consensus 237 DMM----------vANshNLIiTVkPA 253 (358)
T KOG3606|consen 237 DMM----------VANSHNLIITVKPA 253 (358)
T ss_pred HHH----------hhcccceEEEeccc
Confidence 993 67778888888754
No 46
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.13 E-value=7.1e-06 Score=65.57 Aligned_cols=46 Identities=22% Similarity=0.083 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
..++|..|.++++|+++||++||+|++|||+++.+ ++++.+.|+..
T Consensus 12 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~---~~~~~~~l~~~ 57 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS---WEDLVDAVQEN 57 (79)
T ss_pred cCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCC---HHHHHHHHHHC
Confidence 46889999999999999999999999999999997 45777777654
No 47
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.13 E-value=6.9e-06 Score=66.46 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=41.1
Q ss_pred CCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 392 NLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 392 ~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
..|++|..|.++++|+++||++||+|++|||+++.++ +++.+.|+..
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~---~d~~~~l~~~ 55 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL---EDFMEALKPT 55 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH---HHHHHHHhcC
Confidence 4589999999999999999999999999999999974 4777777653
No 48
>KOG3606|consensus
Probab=98.12 E-value=4.9e-06 Score=81.10 Aligned_cols=76 Identities=32% Similarity=0.352 Sum_probs=65.0
Q ss_pred cceEEEEEecCC-CcccEEEecccc---------cCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHH
Q psy14977 367 TVRKVELNIEPG-QSLGLMIRGGVE---------YNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDF 435 (469)
Q Consensus 367 ~~~~V~L~~~~g-~~LGfsi~Gg~e---------~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav 435 (469)
.-++|.|.+... ..|||-|+.|.. ...||||..+.|||.|+..| |-+.|+||+|||+.|.+.+ ++|+.
T Consensus 158 tHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKT-LDQVT 236 (358)
T KOG3606|consen 158 THRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKT-LDQVT 236 (358)
T ss_pred hhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEecccc-HHHHH
Confidence 346677765543 399999988774 23599999999999999999 9999999999999999999 99999
Q ss_pred HHHHhCCC
Q psy14977 436 DTVISFSH 443 (469)
Q Consensus 436 ~~Lk~~g~ 443 (469)
+++-+..+
T Consensus 237 DMMvANsh 244 (358)
T KOG3606|consen 237 DMMVANSH 244 (358)
T ss_pred HHHhhccc
Confidence 99887766
No 49
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.09 E-value=1.3e-05 Score=65.51 Aligned_cols=59 Identities=37% Similarity=0.595 Sum_probs=45.5
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECC
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~ 300 (469)
.+++|..|.+++||+++||+.||+|++|||+++.++. ++...++. ...+..+.+.+.+.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~--~~~~~l~~--------~~~~~~i~l~v~r~ 82 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA--DLRRALAE--------LKPGDKVTLTVLRG 82 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHH--HHHHHHHh--------cCCCCEEEEEEEEC
Confidence 4899999999999999999999999999999998764 44444331 22356677777654
No 50
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=1e-05 Score=65.03 Aligned_cols=52 Identities=23% Similarity=0.099 Sum_probs=41.5
Q ss_pred ccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHH
Q psy14977 381 LGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTV 438 (469)
Q Consensus 381 LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~L 438 (469)
||+.+.. .+.++.|.+|.++++|+++||++||+|++|||+++.++ .+++..+
T Consensus 3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~---~~~l~~~ 54 (80)
T cd00990 3 LGLTLDK---EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL---QDRLKEY 54 (80)
T ss_pred ccEEEEc---cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH---HHHHHhc
Confidence 5676652 23479999999999999999999999999999999873 3554443
No 51
>KOG3552|consensus
Probab=98.03 E-value=3.4e-06 Score=93.24 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC---
Q psy14977 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH--- 443 (469)
Q Consensus 368 ~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~--- 443 (469)
.|.|++ ++...|||.+..| .+++|..|.+||++ .| |.+||+||+|||++|.++. ++.||+++|+...
T Consensus 56 pr~vq~--~r~~~lGFgfvag----rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~dap-rervIdlvRace~sv~ 126 (1298)
T KOG3552|consen 56 PRQVQL--QRNASLGFGFVAG----RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAP-RERVIDLVRACESSVN 126 (1298)
T ss_pred chhhhh--hccccccceeecC----CceEEEEecCCCCc--cccccCCCeEEEecCccccccc-HHHHHHHHHHHhhhcc
Confidence 455665 4456777777755 59999999999999 47 9999999999999999999 9999999999776
Q ss_pred -cccccccc-CceeEEeec
Q psy14977 444 -EQTSPSMY-GVQATLLSS 460 (469)
Q Consensus 444 -~~~~p~~~-~~q~~llss 460 (469)
.+..|+.| ..+.++||.
T Consensus 127 ltV~qPc~~p~pKStflSa 145 (1298)
T KOG3552|consen 127 LTVCQPCVLPGPKSTFLSA 145 (1298)
T ss_pred eEEeccccCCCchhhhhhh
Confidence 44555444 334455543
No 52
>KOG3651|consensus
Probab=98.00 E-value=2.5e-05 Score=77.30 Aligned_cols=72 Identities=32% Similarity=0.507 Sum_probs=63.0
Q ss_pred eEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhh
Q psy14977 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFF 278 (469)
Q Consensus 204 ~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~ 278 (469)
..+|+|.|+. ..=+||+|-||... -+.+||..|..++||++.| ++.||.|++|||..|++.+--++.++|+.
T Consensus 5 ~~~v~ltKD~--~nliGISIGGGapy-CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~ 77 (429)
T KOG3651|consen 5 SETVELTKDE--KNLIGISIGGGAPY-CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV 77 (429)
T ss_pred cCcEEEeecc--ccceeEEecCCCCc-CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence 4679999996 35689999998875 4567999999999999999 99999999999999999999888888763
No 53
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.98 E-value=2.7e-05 Score=62.66 Aligned_cols=43 Identities=40% Similarity=0.632 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
.|++|..|.+++||+. ||+.||.|++|||.++.++ +++...++
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~ 50 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQ 50 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHH
Confidence 3799999999999987 7999999999999999864 55555544
No 54
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.95 E-value=3.5e-05 Score=76.50 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEE
Q psy14977 219 FGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298 (469)
Q Consensus 219 lGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~ 298 (469)
+|+......+. ..|+.|..+.++++|+++||+.||+|++|||+++.++. ++.+++.. ++.++.+.++|.
T Consensus 179 lgi~p~~~~g~-~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~--~~~~~l~~--------~~~~~~v~l~V~ 247 (259)
T TIGR01713 179 IRLSPVMKNDK-LEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPE--QAFQALQM--------LREETNLTLTVE 247 (259)
T ss_pred EeEEEEEeCCc-eeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHh--------cCCCCeEEEEEE
Confidence 45554322221 35899999999999999999999999999999998763 34444331 344455566655
Q ss_pred CCC
Q psy14977 299 SPS 301 (469)
Q Consensus 299 ~~~ 301 (469)
|..
T Consensus 248 R~G 250 (259)
T TIGR01713 248 RDG 250 (259)
T ss_pred ECC
Confidence 543
No 55
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.90 E-value=2.1e-05 Score=64.32 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=40.0
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
.|++|..|.++++|+++||++||+|++|||+++.++. ++.++++..
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~---~~~~~l~~~ 69 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA---DLRRALAEL 69 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHH---HHHHHHHhc
Confidence 4889999999999999999999999999999999865 566666553
No 56
>KOG3605|consensus
Probab=97.85 E-value=1.3e-05 Score=86.13 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=65.8
Q ss_pred CCcceEEEEEecCCCcccEEEecccccC---CcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 365 KDTVRKVELNIEPGQSLGLMIRGGVEYN---LGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 365 ~~~~~~V~L~~~~g~~LGfsi~Gg~e~~---~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
++.+++|.|.+.+++.||+.|... .++ .-++|.....+|||+++| |-.||+|++|||+++.++. +...-.+||+
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVES-GWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLP-LstcQs~Ik~ 720 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVES-GWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLP-LSTCQSIIKG 720 (829)
T ss_pred hcccceeeeecccCceeeEEEEec-CccccchHHHHHhcccCChhhhcCCccccceeEeecCceecccc-HHHHHHHHhc
Confidence 457899999999999999998721 122 245778999999999999 9999999999999999999 9888888888
Q ss_pred CCC
Q psy14977 441 FSH 443 (469)
Q Consensus 441 ~g~ 443 (469)
..+
T Consensus 721 ~Kn 723 (829)
T KOG3605|consen 721 LKN 723 (829)
T ss_pred ccc
Confidence 776
No 57
>KOG3552|consensus
Probab=97.84 E-value=2e-05 Score=87.43 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=63.0
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGY 281 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~ 281 (469)
.+|.|.+.|++ ..|||| +.| .+++|..|.+|+|+ .| |++||+|++|||++|++.+++.|++++|.|
T Consensus 55 ~pr~vq~~r~~--~lGFgf--vag-----rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRac-- 121 (1298)
T KOG3552|consen 55 EPRQVQLQRNA--SLGFGF--VAG-----RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRAC-- 121 (1298)
T ss_pred cchhhhhhccc--ccccee--ecC-----CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHH--
Confidence 37889999985 367777 333 38999999999999 47 999999999999999999999999997643
Q ss_pred ccceEeecCcEEEEEEECC
Q psy14977 282 KEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 282 ~~~~Ilr~g~~v~l~V~~~ 300 (469)
...|.|+|.+.
T Consensus 122 --------e~sv~ltV~qP 132 (1298)
T KOG3552|consen 122 --------ESSVNLTVCQP 132 (1298)
T ss_pred --------hhhcceEEecc
Confidence 45677777664
No 58
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.78 E-value=5e-05 Score=61.11 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.|++|..|.++++|+. ||++||+|++|||+++.++ +++.++|+.
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~---~~~~~~l~~ 51 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA---EELIDYIQS 51 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH---HHHHHHHHh
Confidence 4789999999999986 7999999999999999874 467777764
No 59
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.76 E-value=6.6e-05 Score=78.85 Aligned_cols=60 Identities=18% Similarity=0.089 Sum_probs=49.8
Q ss_pred cccEEEeccccc---CCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 380 SLGLMIRGGVEY---NLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 380 ~LGfsi~Gg~e~---~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
++|+.+.-.... ..+++|..|.++|||+++||++||+|++|||+++.+++ ..++..+|+.
T Consensus 86 GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~-~~~~~~~l~g 148 (389)
T PLN00049 86 GVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLS-LYEAADRLQG 148 (389)
T ss_pred EEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 777776532211 13799999999999999999999999999999999988 8888888865
No 60
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.75 E-value=4.7e-05 Score=78.22 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=49.2
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
++|+.+... ..+++|..|.++|+|+++||++||+|++|||+++.+++ ..++.++++.
T Consensus 52 ~lG~~~~~~---~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~-~~~~~~~l~~ 108 (334)
T TIGR00225 52 GIGIQVGMD---DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMS-LDDAVALIRG 108 (334)
T ss_pred EEEEEEEEE---CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhccC
Confidence 688877632 24789999999999999999999999999999999988 7888888755
No 61
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.74 E-value=0.0011 Score=59.88 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCCCeEEEEEecCC--CCcceEEEEEEcCCCC--CCCcEEEEEeCCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHH
Q psy14977 200 DQLPVRTINMNRSQ--DANHGFGICVKGGANN--PGVGVYISRVEEGSIAERAGLRP-GDSILQVNGIPFTGISHEEALK 274 (469)
Q Consensus 200 ~~~~~~~V~L~r~~--~~~~GlGf~i~gg~~~--~~~gi~V~~V~pgspA~~aGL~~-GD~Il~VNG~~v~~~s~~~av~ 274 (469)
.....|.|.|.... +..+-+|++|+-.... ...++.|-+|.|+|||++|||++ .|.|+.+++..+.+.+ +..+
T Consensus 7 k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~--~l~~ 84 (138)
T PF04495_consen 7 KGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED--DLFE 84 (138)
T ss_dssp TTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC--HHHH
T ss_pred CCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH--HHHH
Confidence 44567888886632 2234577777654322 24688999999999999999997 6999999998888654 4444
Q ss_pred HhhhcCcccceEeecCcEEEEEEEC
Q psy14977 275 MCFFEGYKEGQMLKSNRELSMTVRS 299 (469)
Q Consensus 275 ~ir~~~~~~~~Ilr~g~~v~l~V~~ 299 (469)
+++ ...++.+.|.|..
T Consensus 85 ~v~---------~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 85 LVE---------ANENKPLQLYVYN 100 (138)
T ss_dssp HHH---------HTTTS-EEEEEEE
T ss_pred HHH---------HcCCCcEEEEEEE
Confidence 543 3457788888864
No 62
>PRK10898 serine endoprotease; Provisional
Probab=97.64 E-value=0.00017 Score=74.80 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=34.4
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGI 267 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~ 267 (469)
.|++|..|.+++||+++||+.||+|++|||+++.++
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~ 314 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA 314 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH
Confidence 589999999999999999999999999999999876
No 63
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=8.2e-05 Score=78.47 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=54.2
Q ss_pred CcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 379 QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 379 ~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
.++|+.+..... .++.|.++.+++||+++||++||+|++|||+++.+++ .+++++.|+....
T Consensus 100 ~GiG~~i~~~~~--~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~-~~~av~~irG~~G 161 (406)
T COG0793 100 GGIGIELQMEDI--GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVS-LDEAVKLIRGKPG 161 (406)
T ss_pred cceeEEEEEecC--CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCC-HHHHHHHhCCCCC
Confidence 478888774332 6899999999999999999999999999999999999 9999999987653
No 64
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.61 E-value=0.00016 Score=74.88 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=37.3
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
.|++|..|.+++||+++||+.||+|++|||+++.++ .++.+.+
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l 320 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRI 320 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHH
Confidence 489999999999999999999999999999999876 4444443
No 65
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.55 E-value=0.00026 Score=75.13 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc--cceEeecCcEEEEEEE
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK--EGQMLKSNRELSMTVR 298 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~--~~~Ilr~g~~v~l~V~ 298 (469)
.+++|..|.+++||+++||++||+|++|||+++.++ +++.+.++..... .+++.|+++...+.+.
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~ 269 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGETLSISLT 269 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEEEEEEEE
Confidence 378999999999999999999999999999999865 6666665532222 3555566655555544
No 66
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.53 E-value=0.00018 Score=71.55 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=39.4
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHH
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVI 439 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk 439 (469)
.|+.|..+.++++|+++|||.||+|++|||+++.++.+..++++.++
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~ 237 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLR 237 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999663444444443
No 67
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.51 E-value=0.00022 Score=75.66 Aligned_cols=60 Identities=35% Similarity=0.494 Sum_probs=48.3
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCC
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~ 301 (469)
.+++|..|.+++||+++||++||+|++|||+++.++ +++.++|+. .+.++.+.|+|.|..
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~--------~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDR--------AKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh--------cCCCCEEEEEEEECC
Confidence 589999999999999999999999999999999865 555666441 234667777777654
No 68
>KOG0609|consensus
Probab=97.51 E-value=0.00016 Score=76.79 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=64.1
Q ss_pred cceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 367 ~~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
..+.|.|.+..+..||.+++.... ..++|..|..||.|++.| |++||.|++|||+++.+.. ..++.++|+....
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~-~~e~q~~l~~~~G 196 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKS-PEELQELLRNSRG 196 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC--CccEEeeeccCCcchhccceeeccchheecCeecccCC-HHHHHHHHHhCCC
Confidence 356777877778899999985442 279999999999999999 9999999999999999999 9999999987644
No 69
>PRK10139 serine endoprotease; Provisional
Probab=97.45 E-value=0.00039 Score=74.49 Aligned_cols=44 Identities=36% Similarity=0.420 Sum_probs=38.9
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
.+++|..|.+++||+++||+.||+|++|||+++.++ +++.+.++
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~ 433 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLA 433 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 479999999999999999999999999999999876 66666654
No 70
>KOG0609|consensus
Probab=97.42 E-value=0.00059 Score=72.69 Aligned_cols=70 Identities=30% Similarity=0.521 Sum_probs=61.3
Q ss_pred CeEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 203 ~~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
.++.|.|+|.. +..+|.+|+-..+. .++|.+|..|+.|++.| |++||+|++|||..+.+....++..+++
T Consensus 122 ~vriv~i~k~~--~eplG~Tik~~e~~---~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~ 192 (542)
T KOG0609|consen 122 AVRIVRIVKNT--GEPLGATIRVEEDT---KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLR 192 (542)
T ss_pred eeEEEEEeecC--CCccceEEEeccCC---ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHH
Confidence 35778888885 37899999875542 79999999999999999 9999999999999999999999999976
No 71
>KOG1421|consensus
Probab=97.42 E-value=0.0018 Score=70.58 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=90.1
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCCCC
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPL 312 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~~~ 312 (469)
-++|++|.+.-+- - |..||.||+|||+.+..+++.+-+..|+ ..|+|.|..+.++|...+.....
T Consensus 772 l~~ishv~~~~~k--i-l~~gdiilsvngk~itr~~dl~d~~eid------~~ilrdg~~~~ikipt~p~~et~------ 836 (955)
T KOG1421|consen 772 LYVISHVRPLLHK--I-LGVGDIILSVNGKMITRLSDLHDFEEID------AVILRDGIEMEIKIPTYPEYETS------ 836 (955)
T ss_pred EEEEEeeccCccc--c-cccccEEEEecCeEEeeehhhhhhhhhh------eeeeecCcEEEEEeccccccccc------
Confidence 3578888887443 3 9999999999999998887744333333 45789998888888654331100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCcccEEEecccccC
Q psy14977 313 PPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYN 392 (469)
Q Consensus 313 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~LGfsi~Gg~e~~ 392 (469)
+.--|....-+ + | -+.|. ..+. +-.
T Consensus 837 ---------r~vi~~gailq-----------------~----p------------h~av~----------~q~e---dlp 861 (955)
T KOG1421|consen 837 ---------RAVIWMGAILQ-----------------P----P------------HSAVF----------EQVE---DLP 861 (955)
T ss_pred ---------eEEEEEecccc-----------------C----c------------hHHHH----------HHHh---ccC
Confidence 00001000000 0 0 00000 0000 122
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
.|+||.....+|||.+ +|+.-..|.+|||+.+.+ +++.+.+|+...+
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~---lddf~~~~~~ipd 908 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNT---LDDFYHMLLEIPD 908 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEecccccCc---HHHHHHHHhhCCC
Confidence 5899999999999998 899999999999999987 6699999988766
No 72
>KOG3834|consensus
Probab=97.38 E-value=0.0024 Score=66.37 Aligned_cols=140 Identities=21% Similarity=0.195 Sum_probs=89.8
Q ss_pred CcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCCCCCCCCCCC
Q psy14977 232 VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNH 310 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~~~~~~~~~~ 310 (469)
.+..|-+|..+++|.++| .---|.|++|||..+.. +.+.+..++| .+-++|.|+|.....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk----------~~sekVkltv~n~kt-------- 75 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLK----------ANSEKVKLTVYNSKT-------- 75 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHH----------hcccceEEEEEeccc--------
Confidence 378899999999999999 55789999999988854 3455555544 334448888765322
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCCcceEEEEEecCCCc---ccEEEec
Q psy14977 311 PLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQS---LGLMIRG 387 (469)
Q Consensus 311 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~~~~g~~---LGfsi~G 387 (469)
.+.|.|+|......+ ||++|+=
T Consensus 76 -------------------------------------------------------~~~R~v~I~ps~~wggqllGvsvrF 100 (462)
T KOG3834|consen 76 -------------------------------------------------------QEVRIVEIVPSNNWGGQLLGVSVRF 100 (462)
T ss_pred -------------------------------------------------------ceeEEEEecccccccccccceEEEe
Confidence 123555553333223 8887752
Q ss_pred ccccCC----cEEEEEecCCCHHHHcCCC-CCcEEEEE-ecEEecCcchHHHHHHHHHhCCC-----ccccccc
Q psy14977 388 GVEYNL----GIFITGVDKDSVAERAGLL-VSQLTLYQ-FIKEFLILSDHDKDFDTVISFSH-----EQTSPSM 450 (469)
Q Consensus 388 g~e~~~----GI~V~~V~pgs~A~~aGLr-~GD~IL~V-NG~sv~~~s~h~eav~~Lk~~g~-----~~~~p~~ 450 (469)
..+.. ---|-+|.++++|+++||+ .+|-||-+ |.+ ... .++...+|..... .+|+-..
T Consensus 101 -csf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~~~---~eDl~~lIeshe~kpLklyVYN~D~ 169 (462)
T KOG3834|consen 101 -CSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-MHE---EEDLFTLIESHEGKPLKLYVYNHDT 169 (462)
T ss_pred -ccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh-ccc---hHHHHHHHHhccCCCcceeEeecCC
Confidence 11211 1246789999999999977 89999988 543 322 4455666544333 5555443
No 73
>KOG4371|consensus
Probab=97.38 E-value=0.00073 Score=76.24 Aligned_cols=165 Identities=22% Similarity=0.295 Sum_probs=109.5
Q ss_pred EEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceE
Q psy14977 207 INMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQM 286 (469)
Q Consensus 207 V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~I 286 (469)
+.+.|.+ ..||..+..-.. .+.|+...-.+.-..-.|++||.++.+||..+++.-|.+++.+++
T Consensus 1151 ~~~~r~~---~~l~~~~a~~~~----~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~--------- 1214 (1332)
T KOG4371|consen 1151 VELDRNE---GSLGVQIASLSG----RVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLR--------- 1214 (1332)
T ss_pred ccCCCCC---CCCCceeccCcc----ceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHh---------
Confidence 4444443 567877765332 344555443333333349999999999999999999999999944
Q ss_pred eecCcEEEEEEECCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCccccCCCCC
Q psy14977 287 LKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKD 366 (469)
Q Consensus 287 lr~g~~v~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (469)
..++.|.|-|.|....-.. +.... +. .. ..
T Consensus 1215 -~~~~~~~~~~~r~~~~~~d-----~~~~s------------------~~------~~--------------------~~ 1244 (1332)
T KOG4371|consen 1215 -GGGDRVVLGVQRPPPAYSD-----QHHAS------------------ST------SA--------------------SA 1244 (1332)
T ss_pred -ccCceEEEEeecCCccccc-----chhhh------------------hh------cc--------------------cc
Confidence 4478888988886531000 00000 00 00 00
Q ss_pred cceEEEEEecCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHH
Q psy14977 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVI 439 (469)
Q Consensus 367 ~~~~V~L~~~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk 439 (469)
....|.|.+++..++|+.+..-. ...||||..+..++.|...| ||+||+++..+|+++.+.+ -.+.++.++
T Consensus 1245 ~l~~~~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~-p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1245 PLISVMLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFT-PATILEKLK 1316 (1332)
T ss_pred hhhhheeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCccCCCCC-hHHHHHHhh
Confidence 11334555566678888876433 34599999999999999999 9999999999999999998 555555555
No 74
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.37 E-value=0.00055 Score=72.16 Aligned_cols=38 Identities=37% Similarity=0.606 Sum_probs=32.8
Q ss_pred EEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy14977 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275 (469)
Q Consensus 236 V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ 275 (469)
|..|.|+|+|+++||++||+|++|||+++.+| .++...
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~ 39 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFL 39 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHH
Confidence 67789999999999999999999999999876 444444
No 75
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.37 E-value=0.00042 Score=74.12 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=45.4
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCc--ccceEeecCcEEEEEE
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGY--KEGQMLKSNRELSMTV 297 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~--~~~~Ilr~g~~v~l~V 297 (469)
.+++|..|.+++||+++||++||+|++|||+++.++ +++.+.++.... ..+++.|+++...+.+
T Consensus 221 ~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v 286 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSPLSLTL 286 (449)
T ss_pred cCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEEEEEEE
Confidence 358999999999999999999999999999999865 555556542111 1244444444444433
No 76
>KOG1421|consensus
Probab=97.32 E-value=0.0015 Score=71.15 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=42.1
Q ss_pred cEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCCcccccccc
Q psy14977 394 GIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSHEQTSPSMY 451 (469)
Q Consensus 394 GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~~~~~p~~~ 451 (469)
|+||..-. ++.+++.++. |-.|.+||++++-+ ++..++.+|...+-++.|..|
T Consensus 405 GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPd---LdaFidvlk~L~dg~rV~vry 457 (955)
T KOG1421|consen 405 GVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPD---LDAFIDVLKELPDGARVPVRY 457 (955)
T ss_pred cEEEccCC-CCccccCCcc-eEEEEeecCCcCCC---HHHHHHHHHhccCCCeeeEEE
Confidence 88998766 7888776677 88899999999988 558899998888855555554
No 77
>KOG3938|consensus
Probab=97.28 E-value=0.00043 Score=67.68 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=70.7
Q ss_pred eEEEEEecCCCCcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc
Q psy14977 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYK 282 (469)
Q Consensus 204 ~~~V~L~r~~~~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~ 282 (469)
.+.|.++|+. .-||++|.. ++..-.||++|.++|.-++-- +++||.|-+|||+++.++.|-++.++||.
T Consensus 127 ~kEv~v~Kse---dalGlTITD---NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKe---- 196 (334)
T KOG3938|consen 127 AKEVEVVKSE---DALGLTITD---NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKE---- 196 (334)
T ss_pred ceeEEEEecc---cccceEEee---CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHh----
Confidence 5679999987 789999964 323467999999999999887 99999999999999999999999999884
Q ss_pred cceEeecCcEEEEEEECC
Q psy14977 283 EGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 283 ~~~Ilr~g~~v~l~V~~~ 300 (469)
++.+...+|.+..+
T Consensus 197 ----l~rge~ftlrLieP 210 (334)
T KOG3938|consen 197 ----LPRGETFTLRLIEP 210 (334)
T ss_pred ----cccCCeeEEEeecc
Confidence 67788888877665
No 78
>PRK10942 serine endoprotease; Provisional
Probab=97.25 E-value=0.00088 Score=72.16 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=39.1
Q ss_pred CcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 232 VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 232 ~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
.+++|..|.++++|+++||++||+|++|||++|.++ +++.+.++
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~ 451 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILD 451 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 479999999999999999999999999999999875 66666654
No 79
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.24 E-value=0.0005 Score=76.59 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=49.1
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHc-CCCCCcEEEEEec-----EEecCcchHHHHHHHHHhCCC
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERA-GLLVSQLTLYQFI-----KEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~a-GLr~GD~IL~VNG-----~sv~~~s~h~eav~~Lk~~g~ 443 (469)
++|+.+.-. +..++|..|.+||||+++ ||++||+|++||+ +++.++. .++++++|+....
T Consensus 245 GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~-~~~vv~lirG~~G 310 (667)
T PRK11186 245 GIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWR-LDDVVALIKGPKG 310 (667)
T ss_pred EEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCC-HHHHHHHhcCCCC
Confidence 677777532 236899999999999998 7999999999994 4677888 9999999986443
No 80
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.22 E-value=0.00032 Score=72.69 Aligned_cols=45 Identities=36% Similarity=0.434 Sum_probs=39.3
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
.|++|.+|.++++|+++||++||+|++|||+++.++. ++.+.|+.
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~---dl~~~l~~ 322 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAE---ELMDRIAE 322 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHH---HHHHHHHh
Confidence 4899999999999999999999999999999999865 55555543
No 81
>PRK10898 serine endoprotease; Provisional
Probab=97.14 E-value=0.0005 Score=71.35 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=38.4
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHH
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVI 439 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk 439 (469)
.|++|.+|.++++|+++||++||+|++|||+++.++. +..+.|.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~---~l~~~l~ 322 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISAL---ETMDQVA 322 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence 5999999999999999999999999999999998865 4444443
No 82
>KOG0606|consensus
Probab=97.12 E-value=0.00059 Score=77.86 Aligned_cols=81 Identities=33% Similarity=0.524 Sum_probs=65.0
Q ss_pred EEEEecCCCCcceEEEEEE------cCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhc
Q psy14977 206 TINMNRSQDANHGFGICVK------GGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFE 279 (469)
Q Consensus 206 ~V~L~r~~~~~~GlGf~i~------gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~ 279 (469)
.|+|.+.. .+|||++. |+++....-.+|..|.+++||..+||+.||.|+.|||+.+.++.|.++++++
T Consensus 629 pI~i~~~~---~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Ll--- 702 (1205)
T KOG0606|consen 629 PITIHFSG---KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELL--- 702 (1205)
T ss_pred ceeeeccc---cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHH---
Confidence 47888874 78888765 3444323456899999999999999999999999999999999999999994
Q ss_pred CcccceEeecCcEEEEEEEC
Q psy14977 280 GYKEGQMLKSNRELSMTVRS 299 (469)
Q Consensus 280 ~~~~~~Ilr~g~~v~l~V~~ 299 (469)
++++..+.+.+..
T Consensus 703 -------l~~gn~v~~~ttp 715 (1205)
T KOG0606|consen 703 -------LKSGNKVTLRTTP 715 (1205)
T ss_pred -------HhcCCeeEEEeec
Confidence 5667777666543
No 83
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.08 E-value=0.0035 Score=65.78 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=53.1
Q ss_pred cceEEEEEEcCCCCCCCcEEEEEeC--------CCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc--cce
Q psy14977 216 NHGFGICVKGGANNPGVGVYISRVE--------EGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK--EGQ 285 (469)
Q Consensus 216 ~~GlGf~i~gg~~~~~~gi~V~~V~--------pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~--~~~ 285 (469)
+..+|+.+.. .|++|.... .++||+++||+.||.|++|||+++.++ +++.+.++..... .++
T Consensus 95 G~~iGI~l~t------~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~Lt 166 (402)
T TIGR02860 95 GQSIGVKLNT------KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLT 166 (402)
T ss_pred CEEEEEEEec------CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEE
Confidence 4567876642 377775542 368999999999999999999999876 5556665544322 366
Q ss_pred EeecCcEEEEEEE
Q psy14977 286 MLKSNRELSMTVR 298 (469)
Q Consensus 286 Ilr~g~~v~l~V~ 298 (469)
+.|+++...+.+.
T Consensus 167 V~R~Ge~~tv~V~ 179 (402)
T TIGR02860 167 IERGGKIIETVIK 179 (402)
T ss_pred EEECCEEEEEEEE
Confidence 6777766666654
No 84
>KOG4407|consensus
Probab=97.07 E-value=0.00057 Score=78.34 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=45.3
Q ss_pred cEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 394 GIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 394 GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
-|||++|.++++|.-+-|+.||+++.||.+++.++. ..++|.++|..-.
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~-~s~~~S~~~qt~~ 192 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIA-YSTIVSMIKQTPA 192 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchh-hhhhhhhhccCCC
Confidence 468899999999999999999999999999999999 9999999987655
No 85
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.03 E-value=0.0047 Score=55.67 Aligned_cols=74 Identities=20% Similarity=0.058 Sum_probs=47.8
Q ss_pred cceEEEEEecC----CCcccEEEecccc---cCCcEEEEEecCCCHHHHcCCCC-CcEEEEEecEEecCcchHHHHHHHH
Q psy14977 367 TVRKVELNIEP----GQSLGLMIRGGVE---YNLGIFITGVDKDSVAERAGLLV-SQLTLYQFIKEFLILSDHDKDFDTV 438 (469)
Q Consensus 367 ~~~~V~L~~~~----g~~LGfsi~Gg~e---~~~GI~V~~V~pgs~A~~aGLr~-GD~IL~VNG~sv~~~s~h~eav~~L 438 (469)
..|+|.|...+ ...||+++.-... ...+.-|.+|.|+|||+++||++ .|.|+.+|+..+.+.+ ++.+++
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~---~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED---DLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC---HHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH---HHHHHH
Confidence 45777764322 2489998864332 23477899999999999999998 6999999999998766 666666
Q ss_pred HhCCC
Q psy14977 439 ISFSH 443 (469)
Q Consensus 439 k~~g~ 443 (469)
+...+
T Consensus 87 ~~~~~ 91 (138)
T PF04495_consen 87 EANEN 91 (138)
T ss_dssp HHTTT
T ss_pred HHcCC
Confidence 65544
No 86
>KOG3129|consensus
Probab=97.00 E-value=0.0021 Score=61.02 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=43.8
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHh-hhcC--cccceEeecCcEEEEEEE
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMC-FFEG--YKEGQMLKSNRELSMTVR 298 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~i-r~~~--~~~~~Ilr~g~~v~l~V~ 298 (469)
-++|..|.|+|||+++||++||.|+.+....-.++...+-+..+ +... ...++++|.+..+.|.+.
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~lt 208 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLT 208 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeC
Confidence 47899999999999999999999999987666555432222222 2111 112556666666666554
No 87
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.81 E-value=0.00091 Score=70.56 Aligned_cols=39 Identities=18% Similarity=-0.095 Sum_probs=33.7
Q ss_pred EEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHH
Q psy14977 397 ITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTV 438 (469)
Q Consensus 397 V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~L 438 (469)
|..|.|+|+|+++||++||+|++|||+++.++. ++...+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~---D~~~~l 40 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI---DYQFLC 40 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHh
Confidence 667999999999999999999999999999865 554444
No 88
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.74 E-value=0.0029 Score=67.50 Aligned_cols=43 Identities=40% Similarity=0.490 Sum_probs=37.4
Q ss_pred cceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCE
Q psy14977 216 NHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262 (469)
Q Consensus 216 ~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~ 262 (469)
...||+.+.... ...+|..|.++|||.+|||.+||+|++|||.
T Consensus 450 ~~~LGl~v~~~~----g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 450 AYYLGLKVKSEG----GHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred CcccceEecccC----CeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 357888876533 3689999999999999999999999999998
No 89
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.67 E-value=0.0064 Score=50.58 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=37.8
Q ss_pred cEEEEEeCCC--------CHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECCC
Q psy14977 233 GVYISRVEEG--------SIAERAG--LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301 (469)
Q Consensus 233 gi~V~~V~pg--------spA~~aG--L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~~ 301 (469)
+..|.+|.++ ||..+.| +++||.|++|||+++..-.. ...+|. -+.+++|.|+|.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~--~~~lL~---------~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADAN--PYRLLE---------GKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHH---------TTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCC--HHHHhc---------ccCCCEEEEEEecCC
Confidence 6778888776 7888888 77999999999999976433 223322 366889999998754
No 90
>KOG3938|consensus
Probab=96.38 E-value=0.0032 Score=61.69 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=59.0
Q ss_pred ceEEEEEecCCCcccEEEecccccCC-cEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 368 VRKVELNIEPGQSLGLMIRGGVEYNL-GIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 368 ~~~V~L~~~~g~~LGfsi~Gg~e~~~-GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
.++|++. +....||++|. +.+. -.||+.|.+||.-++-- +.+||.|-+|||+++.++- |-||..+||+...
T Consensus 127 ~kEv~v~-KsedalGlTIT---DNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~R-HYeVArmLKel~r 199 (334)
T KOG3938|consen 127 AKEVEVV-KSEDALGLTIT---DNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKR-HYEVARMLKELPR 199 (334)
T ss_pred ceeEEEE-ecccccceEEe---eCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchh-HHHHHHHHHhccc
Confidence 4566663 33458999997 3333 35999999999999988 9999999999999999999 9999999998765
No 91
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.36 E-value=0.012 Score=58.74 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred CHHHHcCCCCCCEEEEECCEEcCCCCH-HHHHHHhhhcCcccceEeecCcEEEEE
Q psy14977 243 SIAERAGLRPGDSILQVNGIPFTGISH-EEALKMCFFEGYKEGQMLKSNRELSMT 296 (469)
Q Consensus 243 spA~~aGL~~GD~Il~VNG~~v~~~s~-~~av~~ir~~~~~~~~Ilr~g~~v~l~ 296 (469)
....++|||.||.+++|||.++.+... .++.+.|+...+-.++|.|+|..+.+.
T Consensus 218 ~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~ 272 (276)
T PRK09681 218 SLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDIS 272 (276)
T ss_pred HHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEE
Confidence 467889999999999999999987644 445555433333334444444444433
No 92
>KOG1320|consensus
Probab=96.34 E-value=0.034 Score=59.39 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=41.5
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.+++|.+|.+++++...++++||+|++|||+++.++. ++.++|....
T Consensus 398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~---~l~~~i~~~~ 444 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK---HLYELIEECS 444 (473)
T ss_pred eEEEEEEeccCCCcccccccCCCEEEEECCEEeechH---HHHHHHHhcC
Confidence 4789999999999999999999999999999999966 7777776654
No 93
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.011 Score=60.93 Aligned_cols=39 Identities=38% Similarity=0.601 Sum_probs=35.4
Q ss_pred CCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy14977 231 GVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISH 269 (469)
Q Consensus 231 ~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~ 269 (469)
..|++|..|.+++||+++|++.||.|+++||+++.+...
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~ 307 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSD 307 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHH
Confidence 347999999999999999999999999999999987643
No 94
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.08 E-value=0.012 Score=61.83 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=40.8
Q ss_pred cccEEEecccccCCcEEEEEec--------CCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVD--------KDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~--------pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.+|+.+. ..|++|.... .+++|+++||++||+|++|||+++.++. ++.++++...
T Consensus 97 ~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~---DL~~iL~~~~ 159 (402)
T TIGR02860 97 SIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMD---DLANLINKAG 159 (402)
T ss_pred EEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHHhCC
Confidence 5666553 2477775442 3689999999999999999999999865 6666665543
No 95
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.95 E-value=0.0065 Score=64.94 Aligned_cols=47 Identities=21% Similarity=-0.004 Sum_probs=38.5
Q ss_pred cccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecE--EecCcc
Q psy14977 380 SLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIK--EFLILS 429 (469)
Q Consensus 380 ~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~--sv~~~s 429 (469)
.||+.+... +....|..|.++|||.++||.+||+||+|||. .+.+..
T Consensus 452 ~LGl~v~~~---~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~l~~~~ 500 (558)
T COG3975 452 YLGLKVKSE---GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQLDRYK 500 (558)
T ss_pred ccceEeccc---CCeeEEEecCCCChhHhccCCCccEEEEEcCccccccccc
Confidence 788877632 35779999999999999999999999999999 444433
No 96
>KOG0606|consensus
Probab=95.74 E-value=0.01 Score=68.18 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=54.2
Q ss_pred CcccEEEeccc------c-cCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 379 QSLGLMIRGGV------E-YNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 379 ~~LGfsi~Gg~------e-~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
..|||++..-. + |..-..|..|.++++|..+||+.||.|+.|||+.+.++. |.|++++|-+.++
T Consensus 637 ~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~-H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 637 KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLV-HTEVMELLLKSGN 707 (1205)
T ss_pred cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhh-HHHHHHHHHhcCC
Confidence 48888765322 2 333567899999999999999999999999999999999 9999999988776
No 97
>KOG1320|consensus
Probab=95.57 E-value=0.029 Score=59.90 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=54.1
Q ss_pred ceEEEEEEcCCCC----CCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcc-c--ceEeec
Q psy14977 217 HGFGICVKGGANN----PGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYK-E--GQMLKS 289 (469)
Q Consensus 217 ~GlGf~i~gg~~~----~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~-~--~~Ilr~ 289 (469)
.||=|.+.+-.-. -.++++|+.|.+++++...+++.||+|++|||+++.++.| +..+|+.|... . +.+.+.
T Consensus 379 ~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 379 AGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred cceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecC
Confidence 4566665543210 1247899999999999999999999999999999998844 45555544321 1 222233
Q ss_pred CcEEEEEEECC
Q psy14977 290 NRELSMTVRSP 300 (469)
Q Consensus 290 g~~v~l~V~~~ 300 (469)
.+.+++.|...
T Consensus 457 ~e~~tl~Il~~ 467 (473)
T KOG1320|consen 457 AEDATLEILPE 467 (473)
T ss_pred ccceeEEeccc
Confidence 45555555443
No 98
>KOG3129|consensus
Probab=95.54 E-value=0.026 Score=53.73 Aligned_cols=47 Identities=21% Similarity=-0.035 Sum_probs=34.9
Q ss_pred EEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 395 IFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 395 I~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
++|..|.|+|||+++||++||+||++-.+.-.+...+.++-...+..
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~ 187 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSN 187 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhc
Confidence 47899999999999999999999998776655544244444444433
No 99
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.31 E-value=0.04 Score=45.83 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=31.8
Q ss_pred CcEEEEEecCC--------CHHHHcC--CCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 393 LGIFITGVDKD--------SVAERAG--LLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 393 ~GI~V~~V~pg--------s~A~~aG--Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.+..|.+|.++ ||..+.| +++||.|++|||+++.... ....+|....
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~---~~~~lL~~~a 68 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA---NPYRLLEGKA 68 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB----HHHHHHTTT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC---CHHHHhcccC
Confidence 35668888886 8889999 8899999999999999765 5666666543
No 100
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.027 Score=58.10 Aligned_cols=46 Identities=26% Similarity=0.167 Sum_probs=39.2
Q ss_pred CcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhC
Q psy14977 393 LGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISF 441 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~ 441 (469)
.|++|..|.++++|+++||+.||.|+++||..+.+.. +....+...
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~---~l~~~v~~~ 315 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLS---DLVAAVASN 315 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHH---HHHHHHhcc
Confidence 5799999999999999999999999999999999966 444444433
No 101
>KOG1738|consensus
Probab=95.02 E-value=0.034 Score=60.54 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=52.5
Q ss_pred cceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 216 NHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 216 ~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
..|+|+-|...-++ .++|..+.+++||+... |..||.|++||++.+.+|.+..+|..+
T Consensus 212 ~eglg~~I~Ssydg---~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL 270 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDG---PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSL 270 (638)
T ss_pred ccCCceEEeeecCC---ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhc
Confidence 48899999876654 78999999999999999 999999999999999999999888884
No 102
>KOG4371|consensus
Probab=94.73 E-value=0.023 Score=64.71 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=74.2
Q ss_pred cceEEEEEecCC-CcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC--
Q psy14977 367 TVRKVELNIEPG-QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH-- 443 (469)
Q Consensus 367 ~~~~V~L~~~~g-~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~-- 443 (469)
..+.+.+.+.+. +.||..++... ..+.|++..-.++--+--|++||.++.|||+-+++.. |.+|+..++..++
T Consensus 1145 ~p~~i~~~~~r~~~~l~~~~a~~~---~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~-~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1145 GPRVIDVELDRNEGSLGVQIASLS---GRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKV-HQEVVAMLRGGGDRV 1220 (1332)
T ss_pred CCccccccCCCCCCCCCceeccCc---cceehhhcccCCCCCCCCcchhhhhhhccceeeechh-hHHHHHHHhccCceE
Confidence 445555555544 48998887433 4667777766655544459999999999999999999 9999999999998
Q ss_pred ---ccccccccCce--eEEeecCCCceEEeC
Q psy14977 444 ---EQTSPSMYGVQ--ATLLSSSSGSIVITL 469 (469)
Q Consensus 444 ---~~~~p~~~~~q--~~llss~~~~~~~~~ 469 (469)
++..|..|..| +..+++++..|.+||
T Consensus 1221 ~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~ 1251 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHHASSTSASAPLISVML 1251 (1332)
T ss_pred EEEeecCCcccccchhhhhhcccchhhhhee
Confidence 55667778665 455677788887775
No 103
>KOG1738|consensus
Probab=94.49 E-value=0.038 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=56.2
Q ss_pred cCCCcccEEEecccccCCcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 376 EPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 376 ~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
.+..++|+-|... ++..++|.+++++++|+... |..||+|+.||++.+.++. +.-+|+-|+..-.
T Consensus 210 kp~eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwq-lk~vV~sL~~~~s 275 (638)
T KOG1738|consen 210 SPSEGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQ-LKVVVSSLRETPA 275 (638)
T ss_pred CcccCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccch-hHhHHhhcccCcc
Confidence 4456888888744 45788999999999999999 9999999999999999999 9999998877554
No 104
>KOG3532|consensus
Probab=94.31 E-value=0.14 Score=56.38 Aligned_cols=58 Identities=22% Similarity=0.513 Sum_probs=47.9
Q ss_pred CcceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 215 ANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 215 ~~~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
.+..+|+...... ...+-|..|.++++|.++.|++||.+++|||.+|.. ..++.+.++
T Consensus 384 ~s~~ig~vf~~~~---~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~ 441 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNT---NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQ 441 (1051)
T ss_pred ccCceeEEEecCC---ceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHH
Confidence 3467888776544 458889999999999999999999999999999974 477777755
No 105
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.43 E-value=0.29 Score=47.72 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=47.3
Q ss_pred ceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEE
Q psy14977 217 HGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMT 296 (469)
Q Consensus 217 ~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~ 296 (469)
+=+|+.+..+++ ++...+.|||.||..++||+.++.+- +++.++++ .+++-..+.++
T Consensus 205 ki~Gyr~~pgkd-------------~slF~~sglq~GDIavaiNnldltdp--~~m~~llq--------~l~~m~s~qlT 261 (275)
T COG3031 205 KIEGYRFEPGKD-------------GSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQ--------MLRNMPSLQLT 261 (275)
T ss_pred ceEEEEecCCCC-------------cchhhhhcCCCcceEEEecCcccCCH--HHHHHHHH--------hhhcCcceEEE
Confidence 556777766664 47788899999999999999888654 55555554 26777888888
Q ss_pred EECCCC
Q psy14977 297 VRSPSI 302 (469)
Q Consensus 297 V~~~~~ 302 (469)
|.|.+.
T Consensus 262 v~R~G~ 267 (275)
T COG3031 262 VIRRGK 267 (275)
T ss_pred EEecCc
Confidence 888765
No 106
>PF12812 PDZ_1: PDZ-like domain
Probab=93.18 E-value=0.22 Score=40.44 Aligned_cols=46 Identities=17% Similarity=-0.011 Sum_probs=36.7
Q ss_pred cEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 394 GIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 394 GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
+.++.....++++...|+..|-.|.+||++++.+ ++++++.+|+..
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~---Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPD---LDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcC---HHHHHHHHHhCC
Confidence 4566677788888766699999999999999999 457777777653
No 107
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=93.03 E-value=0.26 Score=49.99 Aligned_cols=56 Identities=32% Similarity=0.517 Sum_probs=45.2
Q ss_pred cEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhhhcCcccceEeecCcEEEEEEECC
Q psy14977 233 GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300 (469)
Q Consensus 233 gi~V~~V~pgspA~~aG-L~~GD~Il~VNG~~v~~~s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~~~ 300 (469)
|+|+..|..+++| .| |+.||.|++|||+++.+. ++....++. .+.++.|++...|.
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~--~e~i~~v~~--------~k~Gd~VtI~~~r~ 187 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSS--DELIDYVSS--------KKPGDEVTIDYERH 187 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecCCH--HHHHHHHhc--------cCCCCeEEEEEEec
Confidence 7899999999998 46 999999999999999865 666666541 35588888888864
No 108
>KOG3532|consensus
Probab=92.31 E-value=0.27 Score=54.21 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=46.9
Q ss_pred CcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 379 QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 379 ~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
..+|+...-. ...-+.|-.|.++++|.++.|++||++++|||.+|+. ..++...++....
T Consensus 386 ~~ig~vf~~~--~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s---~~q~~~~~~s~~~ 445 (1051)
T KOG3532|consen 386 SPIGLVFDKN--TNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS---ERQATRFLQSTTG 445 (1051)
T ss_pred CceeEEEecC--CceEEEEEEecCCChhhHhcCCCcceEEEecCccchh---HHHHHHHHHhccc
Confidence 3566655422 2356788999999999999999999999999999988 4477777776544
No 109
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=91.60 E-value=0.24 Score=50.18 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=39.3
Q ss_pred CcEEEEEecCCCHHHHcC-CCCCcEEEEEecEEecCcchHHHHHHHHHhCC
Q psy14977 393 LGIFITGVDKDSVAERAG-LLVSQLTLYQFIKEFLILSDHDKDFDTVISFS 442 (469)
Q Consensus 393 ~GI~V~~V~pgs~A~~aG-Lr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g 442 (469)
.|+||..|..+++| .| |+.||.|++|||+++.+ .+|+++.+++..
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s---~~e~i~~v~~~k 175 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS---SDELIDYVSSKK 175 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCC---HHHHHHHHhccC
Confidence 38999999999988 46 99999999999999998 559999987644
No 110
>KOG3834|consensus
Probab=91.35 E-value=0.66 Score=48.80 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=59.5
Q ss_pred CcccCCCCCeEEEEEecCCCCcce---EEEEEEcCCCCC--CCcEEEEEeCCCCHHHHcCCC-CCCEEEEE-CCEEcCCC
Q psy14977 195 TPPDIDQLPVRTINMNRSQDANHG---FGICVKGGANNP--GVGVYISRVEEGSIAERAGLR-PGDSILQV-NGIPFTGI 267 (469)
Q Consensus 195 ~~~~~~~~~~~~V~L~r~~~~~~G---lGf~i~gg~~~~--~~gi~V~~V~pgspA~~aGL~-~GD~Il~V-NG~~v~~~ 267 (469)
.-.+...+..|.|.|.... +.| ||++|+=..... ..-..|-+|.+++||+.|||+ .+|-|+-+ |.+--
T Consensus 69 tv~n~kt~~~R~v~I~ps~--~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~--- 143 (462)
T KOG3834|consen 69 TVYNSKTQEVRIVEIVPSN--NWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH--- 143 (462)
T ss_pred EEEecccceeEEEEecccc--cccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---
Confidence 3345556677888888875 355 888877544321 234568889999999999977 99999988 55322
Q ss_pred CHHHHHHHhhhcCcccceEeecCcEEEEEEE
Q psy14977 268 SHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298 (469)
Q Consensus 268 s~~~av~~ir~~~~~~~~Ilr~g~~v~l~V~ 298 (469)
..++...+|. ...++.+.|.|.
T Consensus 144 ~~eDl~~lIe---------she~kpLklyVY 165 (462)
T KOG3834|consen 144 EEEDLFTLIE---------SHEGKPLKLYVY 165 (462)
T ss_pred chHHHHHHHH---------hccCCCcceeEe
Confidence 2356666654 344566666654
No 111
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=91.30 E-value=0.24 Score=49.73 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=31.5
Q ss_pred ecCCC---HHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCC
Q psy14977 400 VDKDS---VAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSH 443 (469)
Q Consensus 400 V~pgs---~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~ 443 (469)
|.|+. .=.+.|||.||.+++|||.++.+..+..++++.|++...
T Consensus 211 l~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~te 257 (276)
T PRK09681 211 VKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS 257 (276)
T ss_pred ECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCe
Confidence 44553 335678999999999999999987744455555555544
No 112
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=84.67 E-value=1.6 Score=42.67 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=41.3
Q ss_pred cCCCcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEecEEecCcchHHHHHHHHHhCCCccc
Q psy14977 376 EPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQFIKEFLILSDHDKDFDTVISFSHEQT 446 (469)
Q Consensus 376 ~~g~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~~g~~~~ 446 (469)
++++-+|+.+..+. .++.=++.||+.||..++||+.++++-.+...++++|.+....++
T Consensus 202 r~eki~Gyr~~pgk------------d~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~ql 260 (275)
T COG3031 202 RNEKIEGYRFEPGK------------DGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQL 260 (275)
T ss_pred eCCceEEEEecCCC------------CcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEE
Confidence 44457777766443 456667788999999999999999986655555555555544443
No 113
>PF12812 PDZ_1: PDZ-like domain
Probab=83.91 E-value=1.7 Score=35.25 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
+.++.....++++..-|+..|-.|.+||++++.++ ++.++.+|
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk 73 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVK 73 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHH
Confidence 35555567888887766999999999999999987 44444433
No 114
>KOG4407|consensus
Probab=81.92 E-value=0.71 Score=54.26 Aligned_cols=45 Identities=31% Similarity=0.497 Sum_probs=42.8
Q ss_pred cEEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhh
Q psy14977 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277 (469)
Q Consensus 233 gi~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~~~av~~ir 277 (469)
-+||..|.+++||.-+.||.||+++.||.+++.++...+++.+|+
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~ 188 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIK 188 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhc
Confidence 589999999999999999999999999999999999999999965
No 115
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=81.04 E-value=2.2 Score=44.09 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=30.9
Q ss_pred EEEEecCCCHHHHcCCCCCcEEEEEecEEecCcc
Q psy14977 396 FITGVDKDSVAERAGLLVSQLTLYQFIKEFLILS 429 (469)
Q Consensus 396 ~V~~V~pgs~A~~aGLr~GD~IL~VNG~sv~~~s 429 (469)
++..+..+++|+.+||++||+|+++|+..+..+.
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~ 165 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWD 165 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHH
Confidence 3447999999999999999999999999999966
No 116
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=79.17 E-value=4.3 Score=41.98 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=30.8
Q ss_pred EEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy14977 235 YISRVEEGSIAERAGLRPGDSILQVNGIPFTGISH 269 (469)
Q Consensus 235 ~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~~~s~ 269 (469)
++..+..+++|+.+||+.||+|+++|++++..+..
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~ 166 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDD 166 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHH
Confidence 34478999999999999999999999999987743
No 117
>KOG0792|consensus
Probab=77.75 E-value=4.1 Score=47.45 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=56.1
Q ss_pred cceEEEEEEcCCCCC----CCcEEEEEeC-------------CCCHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 216 NHGFGICVKGGANNP----GVGVYISRVE-------------EGSIAERAG--LRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 216 ~~GlGf~i~gg~~~~----~~gi~V~~V~-------------pgspA~~aG--L~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
.+-|||.+.|+.+.. ..++.+++|. |+++|+.+. +..||+++.|||..+....+++++.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 477999999988762 2677888888 999998887 999999999999999999999999998
Q ss_pred hhcC
Q psy14977 277 FFEG 280 (469)
Q Consensus 277 r~~~ 280 (469)
|..+
T Consensus 795 rs~r 798 (1144)
T KOG0792|consen 795 RSPR 798 (1144)
T ss_pred hhhh
Confidence 7543
No 118
>KOG0792|consensus
Probab=74.95 E-value=1.1 Score=51.82 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=57.9
Q ss_pred CCcccEEEecccccC-----CcEEEEEec-------------CCCHHHHcC--CCCCcEEEEEecEEecCcchHHHHHHH
Q psy14977 378 GQSLGLMIRGGVEYN-----LGIFITGVD-------------KDSVAERAG--LLVSQLTLYQFIKEFLILSDHDKDFDT 437 (469)
Q Consensus 378 g~~LGfsi~Gg~e~~-----~GI~V~~V~-------------pgs~A~~aG--Lr~GD~IL~VNG~sv~~~s~h~eav~~ 437 (469)
.+.+||.++|+.+-. .+..+..|. |.+.|+... +-.||+++.|||.++.... |+++|.+
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~-~~~~vs~ 793 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESE-HDQVVSL 793 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccccccccc-ccchHHH
Confidence 458999999998744 577888888 999999998 9999999999999999999 9999999
Q ss_pred HHhCCC
Q psy14977 438 VISFSH 443 (469)
Q Consensus 438 Lk~~g~ 443 (469)
|++..+
T Consensus 794 irs~r~ 799 (1144)
T KOG0792|consen 794 IRSPRE 799 (1144)
T ss_pred Hhhhhh
Confidence 998766
No 119
>KOG2921|consensus
Probab=74.32 E-value=2.8 Score=43.84 Aligned_cols=47 Identities=17% Similarity=0.014 Sum_probs=37.8
Q ss_pred cCCcEEEEEecCCCHHHHc-CCCCCcEEEEEecEEecCcchHHHHHHHHHh
Q psy14977 391 YNLGIFITGVDKDSVAERA-GLLVSQLTLYQFIKEFLILSDHDKDFDTVIS 440 (469)
Q Consensus 391 ~~~GI~V~~V~pgs~A~~a-GLr~GD~IL~VNG~sv~~~s~h~eav~~Lk~ 440 (469)
++.++.|.+|...||+.-. ||.+||+|..+||.+|.... +.++.|+.
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~---dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVS---DWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccCCHH---HHHHHHHh
Confidence 4568889999999888544 49999999999999999966 55555554
No 120
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=74.06 E-value=11 Score=35.78 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=40.4
Q ss_pred CCCeEEEEEecCCCCc-----ceEEEEEEcCCCCCCCcEEEEEeCCCCHHHHcCCCCCCEEEEE
Q psy14977 201 QLPVRTINMNRSQDAN-----HGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQV 259 (469)
Q Consensus 201 ~~~~~~V~L~r~~~~~-----~GlGf~i~gg~~~~~~gi~V~~V~pgspA~~aGL~~GD~Il~V 259 (469)
+...++|.|.-+.+.. ...|+.+....+ .+.|..|..||+|+++|+..+++|.+|
T Consensus 90 ~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~e~~----~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 90 DPVTKTVLLPLGDGADGEERLEAAGLTLMEEGG----KVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred CceEEEEEEEcCCCCCHHHHHHhCCCEEEeeCC----EEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 3345667766554211 126888776444 589999999999999999999999887
No 121
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=70.25 E-value=14 Score=35.05 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=38.6
Q ss_pred ceEEEEEecCC-------CcccEEEecccccCCcEEEEEecCCCHHHHcCCCCCcEEEEEe
Q psy14977 368 VRKVELNIEPG-------QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLVSQLTLYQF 421 (469)
Q Consensus 368 ~~~V~L~~~~g-------~~LGfsi~Gg~e~~~GI~V~~V~pgs~A~~aGLr~GD~IL~VN 421 (469)
.+.|.|.+..+ ...|+.+.. .+..+.|..|.-||+|+++|+..+++|++|-
T Consensus 93 ~k~v~lpl~~~~~g~eRL~~~GL~l~~---e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 93 TKTVLLPLGDGADGEERLEAAGLTLME---EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred EEEEEEEcCCCCCHHHHHHhCCCEEEe---eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 35566655543 266777763 3357899999999999999999999998874
No 122
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.53 E-value=4.4 Score=35.26 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=10.8
Q ss_pred ccceeeCCCCCc
Q psy14977 79 KAGLYYSPPGTS 90 (469)
Q Consensus 79 ~~~~~~~p~~~s 90 (469)
+|||||+|-|+|
T Consensus 25 ~SGLYy~~Kgks 36 (114)
T cd01259 25 SSGLYYFPKEKT 36 (114)
T ss_pred CCeeEEccCCCc
Confidence 599999999986
No 123
>KOG3751|consensus
Probab=47.34 E-value=8.7 Score=41.66 Aligned_cols=12 Identities=67% Similarity=1.193 Sum_probs=11.3
Q ss_pred ccceeeCCCCCc
Q psy14977 79 KAGLYYSPPGTS 90 (469)
Q Consensus 79 ~~~~~~~p~~~s 90 (469)
|+||||+|-|||
T Consensus 342 ~SGLYys~K~ts 353 (622)
T KOG3751|consen 342 RSGLYYSTKGTS 353 (622)
T ss_pred cCcceEccCCCC
Confidence 799999999997
No 124
>KOG2921|consensus
Probab=40.62 E-value=29 Score=36.63 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHh
Q psy14977 231 GVGVYISRVEEGSIAERA-GLRPGDSILQVNGIPFTGISHEEALKMC 276 (469)
Q Consensus 231 ~~gi~V~~V~pgspA~~a-GL~~GD~Il~VNG~~v~~~s~~~av~~i 276 (469)
+.++.|..|...||+--- ||.+||.|.++||.+|... ++....+
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl 263 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECL 263 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHH
Confidence 688999999998887433 6999999999999999765 4444443
No 125
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=29.63 E-value=34 Score=35.07 Aligned_cols=32 Identities=41% Similarity=0.544 Sum_probs=28.0
Q ss_pred EEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC
Q psy14977 234 VYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265 (469)
Q Consensus 234 i~V~~V~pgspA~~aGL~~GD~Il~VNG~~v~ 265 (469)
+-+-+|.+.+||+++|+-+||-|+-+|+.++.
T Consensus 65 l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhccccceeEEeecCCcHH
Confidence 45778889999999999999999999987663
No 126
>PRK03760 hypothetical protein; Provisional
Probab=20.02 E-value=1.1e+02 Score=26.70 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=18.1
Q ss_pred cEEEEEecCCCHHHHcCCCCCcEE
Q psy14977 394 GIFITGVDKDSVAERAGLLVSQLT 417 (469)
Q Consensus 394 GI~V~~V~pgs~A~~aGLr~GD~I 417 (469)
-.+|-++ +.|.+++.||++||+|
T Consensus 90 a~~VLEl-~aG~~~~~gi~~Gd~v 112 (117)
T PRK03760 90 ARYIIEG-PVGKIRVLKVEVGDEI 112 (117)
T ss_pred ceEEEEe-CCChHHHcCCCCCCEE
Confidence 4467776 6667888999999997
Done!