RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14977
(469 letters)
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 98.6 bits (246), Expect = 3e-25
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 195 TPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGD 254
++ Q R + + + G ++GG + +G++IS+V S A RAGL+ GD
Sbjct: 7 GNNELTQFLPRIVTLKKPP--GAQLGFNIRGGKAS-QLGIFISKVIPDSDAHRAGLQEGD 63
Query: 255 SILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPP 304
+L VN + F I H +A+ ++LK+ RE+SM VR S P
Sbjct: 64 QVLAVNDVDFQDIEHSKAV-----------EILKTAREISMRVRFFSGPS 102
Score = 62.8 bits (153), Expect = 1e-12
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ ++ R V L PG LG IRGG LGIFI+ V DS A RAGL
Sbjct: 8 NNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 97.8 bits (244), Expect = 4e-25
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
+ ++ + +S G V+GG+ + G+G+++S+VEEGS AERAGL GD I +VNG+
Sbjct: 10 IIHSVRVEKSPAG--RLGFSVRGGSEH-GLGIFVSKVEEGSSAERAGLCVGDKITEVNGL 66
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQA 306
+ A+ ++L S+ L M VR P +
Sbjct: 67 SLESTTMGSAV-----------KVLTSSSRLHMMVRRMGSGPSS 99
Score = 61.2 bits (149), Expect = 4e-12
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
S S D + V + P LG +RGG E+ LGIF++ V++ S AERAGL V
Sbjct: 3 SGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCV 56
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 98.0 bits (244), Expect = 1e-24
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 25/147 (17%)
Query: 189 PRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA 248
RR T + + +N+ G+ ++GGA G+G+YI+ V+ GS AE +
Sbjct: 6 SGDRRSTLHLLQGGDEKKVNLVLGD--GRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGS 62
Query: 249 GLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPR 308
GL+ GD IL+VNG F I H+EA+ ++LKS+R L +TV+ P A
Sbjct: 63 GLKVGDQILEVNGRSFLNILHDEAV-----------RLLKSSRHLILTVKDVGRLPHAR- 110
Query: 309 NHPLPPPPAWTMRQAYSWIDRQGRPCS 335
T WI P S
Sbjct: 111 ----------TTVDETKWIASSSGPSS 127
Score = 61.4 bits (149), Expect = 9e-12
Identities = 29/63 (46%), Positives = 35/63 (55%)
Query: 351 PPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAG 410
R + +KV L + G+SLGL IRGG EY LGI+ITGVD S AE +G
Sbjct: 4 GSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG 63
Query: 411 LLV 413
L V
Sbjct: 64 LKV 66
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 97.7 bits (243), Expect = 7e-24
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 187 HHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAE 246
H + +LTP +L + + ++R G G+ V+GG G G++IS + +G A+
Sbjct: 70 HQVEYDQLTPRRSRKL--KEVRLDRLHPE--GLGLSVRGGLEF-GCGLFISHLIKGGQAD 124
Query: 247 RAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRS-PSIPPQ 305
GL+ GD I+++NG + +HEE + ++++ + +S+ VR IP +
Sbjct: 125 SVGLQVGDEIVRINGYSISSCTHEEVI-----------NLIRTEKTVSIKVRHIGLIPVK 173
Query: 306 APRNHPL 312
+ + PL
Sbjct: 174 SSPDEPL 180
Score = 68.4 bits (167), Expect = 1e-13
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 334 CSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNL 393
P D R +IP+ +R +++V L+ + LGL +RGG+E+
Sbjct: 55 RLPLFDAIRPLIPLKHQVEYDQLTPRRSRK----LKEVRLDRLHPEGLGLSVRGGLEFGC 110
Query: 394 GIFITGVDKDSVAERAGLLV 413
G+FI+ + K A+ GL V
Sbjct: 111 GLFISHLIKGGQADSVGLQV 130
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 91.6 bits (228), Expect = 8e-23
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 13/102 (12%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
VR +++ R++ + G G ++GG+ + GVG+Y+S VE GS+AE+ GLR GD IL+VN
Sbjct: 8 EVRLVSLRRAKA-HEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPP 304
++H EA+ + LK +++L ++V S
Sbjct: 66 SLARVTHAEAV-----------KALKGSKKLVLSVYSAGRIS 96
Score = 59.7 bits (145), Expect = 2e-11
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 361 ARSSKDTVRKVELNIEPG-QSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ S VR V L + LG IRGG E+ +GI+++ V+ S+AE+ GL V
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRV 55
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 93.3 bits (232), Expect = 3e-22
Identities = 42/221 (19%), Positives = 66/221 (29%), Gaps = 76/221 (34%)
Query: 201 QLP---VRTINMNRSQDANHGFGICVKGGANNP---GVGVYISRVEEGSIAERAG-LRPG 253
Q+ + + D GFGI ++G IS +E S AER G L+ G
Sbjct: 1 QVVHTETTEVVLTA--DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 58
Query: 254 DSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLP 313
D ++ +NGIP + EEA ++ + S+ +T+
Sbjct: 59 DRVMAINGIPTEDSTFEEANQL----------LRDSSITSKVTLE--------------- 93
Query: 314 PPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVEL 373
I P V+L
Sbjct: 94 -------------------------------IEFDVAESVIPSSG---------TFHVKL 113
Query: 374 NIEPGQSLGLMIRGGV--EYNLGIFITGVDKDSVAERAGLL 412
+ LG+ I + + I+ + K SVA R G L
Sbjct: 114 PKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTL 154
Score = 79.0 bits (195), Expect = 3e-17
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 24/144 (16%)
Query: 160 LSPEQVLKMLTSGGGGKKSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGF 219
+ E+ ++L + I + + +
Sbjct: 72 STFEEANQLLRDSS--------ITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV--EL 121
Query: 220 GICVKGGANN-PGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCF 277
GI + ++ PG + IS +++GS+A R G L GD +L ++ I S E+A+
Sbjct: 122 GITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAV---- 177
Query: 278 FEGYKEGQMLK-SNRELSMTVRSP 300
Q+L+ + + +R
Sbjct: 178 -------QILQQCEDLVKLKIRKD 194
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 90.6 bits (225), Expect = 3e-22
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 193 RLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRP 252
P + + + ++ + G G + G G++IS V+ GS++ GL
Sbjct: 5 SSGSPGNRENKEKKVFISLVG--SRGLGCSISSGPIQ-KPGIFISHVKPGSLSAEVGLEI 61
Query: 253 GDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPL 312
GD I++VNG+ F+ + H+EA+ +LKS+R L++++ + + +
Sbjct: 62 GDQIVEVNGVDFSNLDHKEAV-----------NVLKSSRSLTISIVAAAGRELFMTDRSG 110
Query: 313 PP 314
P
Sbjct: 111 PS 112
Score = 62.5 bits (152), Expect = 2e-12
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 358 NYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ S + ++ +KV +++ + LG I G GIFI+ V S++ GL +
Sbjct: 6 SGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEI 61
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 87.7 bits (217), Expect = 2e-21
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
+I++ +S A +G + + +Y++ V+E +A + GL+ GD IL++N
Sbjct: 7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRA 66
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRS-PSI 302
++ + S L + VR+ P +
Sbjct: 67 ADALNSSML------------KDFLSQPSLGLLVRTYPEL 94
Score = 33.0 bits (75), Expect = 0.032
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 367 TVRKVEL--NIEPGQSLGLMIRGGVEYNL-GIFITGVDKDSVAERAGLLV 413
+ + + + G + E + +++ V + +A + GL
Sbjct: 6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKA 55
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 87.1 bits (216), Expect = 2e-21
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 201 QLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVN 260
Q I++N++ + FG +K G++++ VE GS AE + L+ D I+ +N
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWDIP----GIFVASVEAGSPAEFSQLQVDDEIIAIN 56
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKSNRE---LSMTVR 298
F+ +E + + +E L M VR
Sbjct: 57 NTKFSYNDSKEWE-----------EAMAKAQETGHLVMDVR 86
Score = 46.3 bits (110), Expect = 7e-07
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 369 RKVELNIEPGQS--LGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
++ +N PG+S G I+ + GIF+ V+ S AE + L V
Sbjct: 5 MRISINQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEFSQLQV 48
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 86.0 bits (213), Expect = 2e-20
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 181 GSEEHHHH-----PRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVY 235
GS HHHH + I + ++ + + G+ + GG + VG++
Sbjct: 2 GSSHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGD----SVGLRLAGGND---VGIF 54
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
++ V E S A + GL GD IL+VN + FT I EEA+
Sbjct: 55 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLF 94
Score = 49.8 bits (119), Expect = 9e-08
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 347 MPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVA 406
+ + +++ V+ G S+GL + GG + +GIF+ GV +DS A
Sbjct: 9 HHSSGGTENLYFQGHMILRPSMKLVKF--RKGDSVGLRLAGGND--VGIFVAGVLEDSPA 64
Query: 407 ERAGLLV 413
+ GL
Sbjct: 65 AKEGLEE 71
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 85.5 bits (211), Expect = 2e-20
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
+I ++I++ +S A +G + + +Y++ V+E +A + GL+ GD IL
Sbjct: 10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEIL 69
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPA 317
++N ++ + S L + VR+ P+ P
Sbjct: 70 EINNRAADALNSSML------------KDFLSQPSLGLLVRT---YPELEEGVESGPSSG 114
Score = 33.1 bits (75), Expect = 0.052
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 366 DTVRKVELNIEPG--QSLGLMIRGGVEYNL-GIFITGVDKDSVAERAGLLV 413
+ + + + G + E + +++ V + +A + GL
Sbjct: 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKA 64
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 84.1 bits (208), Expect = 6e-20
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 184 EHHHHPRHRRLTPPDID-QLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEG 242
HHHH L ++ Q R+I + G ++G A V + ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMPRSIRFTAEE---GDLGFTLRGNA-----PVQVHFLDPY 54
Query: 243 SIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKS--NRELSMTVRSP 300
A AG R GD I+ + + ++ E + ++LKS E+ M V S
Sbjct: 55 CSASVAGAREGDYIVSIQLVDCKWLTLSEVM-----------KLLKSFGEDEIEMKVVSL 103
Score = 36.7 bits (85), Expect = 0.003
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
R + E G LG +RG + + +D A AG
Sbjct: 25 RSIRFTAEEG-DLGFTLRGN----APVQVHFLDPYCSASVAGA 62
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 84.7 bits (209), Expect = 7e-20
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 185 HHHHP-RHRRLTPPDIDQLPVRTINMNR-SQDANHGFGICVKGGANNPGV---------- 232
HHHH T Q V+ + +++ Q N G + GG +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTD 63
Query: 233 -GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLK--S 289
G+Y++RV EG AE AGL+ GD I+QVNG T ++H++A K L S
Sbjct: 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK-----------RLTKRS 112
Query: 290 NRELSMTVRSPSIPP 304
+ + V S+
Sbjct: 113 EEVVRLLVTRQSLQK 127
Score = 42.3 bits (99), Expect = 4e-05
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 358 NYSARSSKDTVRKVELNIEPGQSLGLMIRGGVE------------YNLGIFITGVDKDSV 405
N +S V +L LG I GG++ + GI++T V +
Sbjct: 17 NLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGP 76
Query: 406 AERAGLLV 413
AE AGL +
Sbjct: 77 AEIAGLQI 84
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 82.8 bits (205), Expect = 1e-19
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G + GG + + I+R+ GS A A L PGD IL ++G ++H +A
Sbjct: 16 PWGFRLSGGIDF-NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDR-- 72
Query: 278 FEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPP 315
+ ++ +L + + +P+ P
Sbjct: 73 --------IKAASYQLCLKIDRAETRLWSPQVSSGPSS 102
Score = 46.6 bits (111), Expect = 8e-07
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ + + G + GG+++N + IT + S A A L
Sbjct: 2 SSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCP 49
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 82.5 bits (204), Expect = 2e-19
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 184 EHHHHPRHRRLTPPDIDQLP------VRTINMNRSQDANHGFGICVKGGANNPGVGVYIS 237
HHHH H + + +R + + + + + G GI + GG + GV + IS
Sbjct: 2 HHHHHHHHHSSGHIEGRHMENLYFQGIRKVLLLK--EDHEGLGISITGGKEH-GVPILIS 58
Query: 238 RVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ G A+R G L GD+IL VNG+ H+EA+ +
Sbjct: 59 EIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 97
Score = 59.0 bits (143), Expect = 4e-11
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAE 407
+ +RKV L E + LG+ I GG E+ + I I+ + A+
Sbjct: 8 HHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPAD 67
Query: 408 RAGLL 412
R G L
Sbjct: 68 RCGGL 72
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 82.0 bits (203), Expect = 3e-19
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNG 261
P+R + + + + G GI + GG + GV + IS + G A+R G L GD+IL VNG
Sbjct: 9 PIRKVLLLKED--HEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNG 65
Query: 262 IPFTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMTVRSPSIPPQAPRNH 310
+ H+EA+ +L R E+ V + + +H
Sbjct: 66 VNLRDTKHKEAV-----------TILSQQRGEIEFEVV--YVALEHHHHH 102
Score = 58.1 bits (141), Expect = 6e-11
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+RKV L E + LG+ I GG E+ + I I+ + A+R G L
Sbjct: 5 QGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGL 54
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 81.1 bits (201), Expect = 3e-19
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
++ + +G ++GG + + + ISR+ GS A ++ L GD ++ ++G+
Sbjct: 2 AYSVTLTGPG----PWGFRLQGGKDF-NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVN 56
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
++H EA + ++ LS+T++
Sbjct: 57 TDTMTHLEAQNK----------IKSASYNLSLTLQ 81
Score = 49.2 bits (118), Expect = 6e-08
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
V L G ++GG ++N+ + I+ + S A ++ L
Sbjct: 2 AYSVTL--TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQ 45
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 81.2 bits (201), Expect = 3e-19
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R ++ + G+G + + PG YI V+ GS A R+GLR D +++VNG
Sbjct: 6 RLCHLRKG---PQGYGFNLHSDKSRPGQ--YIRSVDPGSPAARSGLRAQDRLIEVNGQNV 60
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301
G+ H E + + E + V PS
Sbjct: 61 EGLRHAEVVAS----------IKAREDEARLLVVGPS 87
Score = 40.0 bits (94), Expect = 1e-04
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R L P Q G + G +I VD S A R+GL
Sbjct: 6 RLCHLRKGP-QGYGFNLHSDKSRP-GQYIRSVDPGSPAARSGLRA 48
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.2 bits (201), Expect = 4e-19
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
++ + +G + GG + + ISRV GS A A L PGD I +NG
Sbjct: 10 HSVTLRGPS----PWGFRLVGGRDF-SAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301
++H EA + + L+++V S
Sbjct: 65 ELMTHLEAQNR----------IKGCHDHLTLSVSSGP 91
Score = 48.0 bits (115), Expect = 2e-07
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 361 ARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ S V L G + GG +++ + I+ V S A A L
Sbjct: 2 SSGSSGMPHSVTL--RGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCP 52
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 81.6 bits (202), Expect = 4e-19
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G ++GG + + + IS +++G A +A +R GD +L ++GI G++H EA
Sbjct: 16 PWGFRLQGGKDF-NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNK-- 72
Query: 278 FEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPP 315
+ L+MT++ S ++ P
Sbjct: 73 --------IKACTGSLNMTLQRASAAAKSEPVSSGPSS 102
Score = 42.7 bits (101), Expect = 2e-05
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 378 GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
G ++GG ++N+ + I+ + A +A + +
Sbjct: 14 PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRI 49
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 80.8 bits (200), Expect = 5e-19
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R + + + HGFG V G V + V G A +AG++ GD I++VNG
Sbjct: 10 RCVIIQKD---QHGFGFTVSGDR-----IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMV 61
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQA 306
T SH E +K ++KS +++T+ S P +
Sbjct: 62 TNSSHLEVVK-----------LIKSGAYVALTLLGSSSGPSS 92
Score = 34.2 bits (79), Expect = 0.012
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R V + + G + G + + V A +AG+
Sbjct: 10 RCVIIQKDQH-GFGFTVSGDR----IVLVQSVRPGGAAMKAGVKE 49
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 81.6 bits (202), Expect = 5e-19
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 185 HHHHPRHRRLTPPDIDQLP----VRTINMNRSQDANHGFGICVKGGANNP--GVGVYISR 238
HHHH + + +RT+ M + GI + GG +P V ++I+
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMGLRTVEMKK--GPTDSLGISIAGGVGSPLGDVPIFIAM 59
Query: 239 VEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMT 296
+ +A + LR GD I+ + G G++H +A+ +LK+ + M
Sbjct: 60 MHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAV-----------NLLKNASGSIEMQ 108
Query: 297 VRSPSIPPQA 306
V + +
Sbjct: 109 VVAGGDVSET 118
Score = 45.8 bits (109), Expect = 2e-06
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 346 PMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY---NLGIFITGVDK 402
S +R VE+ P SLG+ I GGV ++ IFI +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMG-LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHP 62
Query: 403 DSVAERAGLL 412
VA + L
Sbjct: 63 TGVAAQTQKL 72
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 81.2 bits (201), Expect = 6e-19
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV-----GVYISRVEEGSIAERAGL 250
P + T+ + R G GI + GG + G++ISRV E A RAG+
Sbjct: 8 EPARIEEEELTLTILRQ---TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGV 64
Query: 251 RPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQA 306
R GD +L+VNG+ G H EA+ + L+ + + M V S P
Sbjct: 65 RVGDKLLEVNGVALQGAEHHEAV-----------EALRGAGTAVQMRVWRESGPSSG 110
Score = 43.1 bits (102), Expect = 1e-05
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 16/74 (21%)
Query: 346 PMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY------NLGIFITG 399
P + + + G LG+ I GG + GIFI+
Sbjct: 3 SGSSGEPARIEEEE---------LTLTILRQTG-GLGISIAGGKGSTPYKGDDEGIFISR 52
Query: 400 VDKDSVAERAGLLV 413
V ++ A RAG+ V
Sbjct: 53 VSEEGPAARAGVRV 66
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 80.4 bits (199), Expect = 6e-19
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G ++GG + + + IS +++G A +A +R GD +L ++GI G++H EA
Sbjct: 14 PWGFRLQGGKDF-NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNK-- 70
Query: 278 FEGYKEGQMLKSNRELSMTVRSPS 301
+ L+MT++ S
Sbjct: 71 --------IKGCTGSLNMTLQRES 86
Score = 50.0 bits (120), Expect = 3e-08
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 371 VELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+++ G ++GG ++N+ + I+ + A +A + +
Sbjct: 5 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRI 47
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 81.4 bits (201), Expect = 7e-19
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 181 GSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVE 240
GS R + + R + + + + GI + G G+Y+S+V
Sbjct: 1 GSSGSSGGERRKDRPYVE----EPRHVKVQKG---SEPLGISIVSGE---KGGIYVSKVT 50
Query: 241 EGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRS 299
GSIA +AGL GD +L+ NGI + ++A + + + +++ +
Sbjct: 51 VGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLI----------IGQQCDTITILAQY 99
Score = 42.1 bits (99), Expect = 4e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 352 PPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
R + R V++ + + LG+ I G GI+++ V S+A +AGL
Sbjct: 4 GSSGGERRKDRPYVEEPRHVKVQ-KGSEPLGISIVSG--EKGGIYVSKVTVGSIAHQAGL 60
Query: 412 LV 413
Sbjct: 61 EY 62
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 80.0 bits (198), Expect = 7e-19
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G ++GG + V + ISR+ G A +AG+ GD +L ++G ++H EA
Sbjct: 14 PWGFRLQGGKDF-NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQ---- 68
Query: 278 FEGYKEGQMLK-SNRELSMTVRSPS 301
++ LS+ +
Sbjct: 69 -------NKIRACGERLSLGLSRAI 86
Score = 50.8 bits (122), Expect = 2e-08
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
++ ++ +E G ++GG ++N+ + I+ + A +AG+ V
Sbjct: 1 SMDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAV 47
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 80.0 bits (198), Expect = 8e-19
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G + GG + + +++V E A+ A LRPGD I+ +NG G+ H EA
Sbjct: 13 PWGFRITGGRDF-HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSK-- 69
Query: 278 FEGYKEGQMLKSNRELSMTVRSPS 301
+ +S L + + +
Sbjct: 70 --------IRQSPSPLRLQLDRIT 85
Score = 47.3 bits (113), Expect = 3e-07
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 371 VELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ +++ G I GG +++ I +T V + A+ A L
Sbjct: 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRP 46
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 80.0 bits (198), Expect = 1e-18
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R + + + G+G + G G YI VE GS AE+AGL GD +++VNG
Sbjct: 5 RLCCLEKGPN---GYGFHLHGEKGKLGQ--YIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
+H++ + + + + + V P
Sbjct: 60 EKETHQQVVSR----------IRAALNAVRLLVVDP 85
Score = 41.9 bits (99), Expect = 3e-05
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R L P G + G + LG +I V+ S AE+AGLL
Sbjct: 5 RLCCLEKGP-NGYGFHLHGE-KGKLGQYIRLVEPGSPAEKAGLLA 47
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 80.1 bits (198), Expect = 1e-18
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGV-----------GVYISRVEEGSIAERAGLRPG 253
R + + +S G+G V+G + G ++S V G A+RAG+R G
Sbjct: 8 RVVRIVKS---ESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKG 64
Query: 254 DSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301
D IL+VNG+ G +H++ + + + +EL +TV S
Sbjct: 65 DRILEVNGVNVEGATHKQVVDL----------IRAGEKELILTVLSVE 102
Score = 40.4 bits (95), Expect = 1e-04
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 13/57 (22%)
Query: 369 RKVELNIEPGQSLGLMIRGGV------------EYNLGIFITGVDKDSVAERAGLLV 413
R V + G +RG V Y ++ V A+RAG+
Sbjct: 8 RVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRK 63
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 79.3 bits (196), Expect = 2e-18
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG-VGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
R +++ + GFG ++ G G ++ V+ G A++AG++ GD ++ V G
Sbjct: 5 RCLHLEKG---PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGES 61
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPL 312
G+ HEE + + +S+TV + P+A R +
Sbjct: 62 VEGLGHEETVSR----------IQGQGSCVSLTV----VDPEADRETSV 96
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYN--LGIFITGVDKDSVAERAGLLV 413
R + L P Q G ++R + G F+ VD A++AG+
Sbjct: 5 RCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQA 50
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 78.9 bits (195), Expect = 2e-18
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
R + + + G GI +KGG N + + IS++ +G A++ L GD+IL VNG
Sbjct: 6 RRVTVRK--ADAGGLGISIKGGRENK-MPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMTVR 298
+ +H+EA+ Q LK E+ + V+
Sbjct: 63 LSSATHDEAV-----------QALKKTGKEVVLEVK 87
Score = 58.4 bits (142), Expect = 3e-11
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
R+V + LG+ I+GG E + I I+ + K A++ L
Sbjct: 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEAL 49
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 78.9 bits (195), Expect = 2e-18
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
+ + + + FG V G GV Y+ + + GL+P D +LQVN +
Sbjct: 7 LHKVTLYKDSG-MEDFGFSVADGLLEKGV--YVKNIRPAGPGDLGGLKPYDRLLQVNHVR 63
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTV-RSP 300
+ + + +S +L + + R+P
Sbjct: 64 TRDFDCCLVVPL----------IAESGNKLDLVISRNP 91
Score = 43.1 bits (102), Expect = 1e-05
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 368 VRKVELNIEP-GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ KV L + + G + G+ G+++ + + GL
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGL-LEKGVYVKNIRPAGPGDLGGLKP 52
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 78.9 bits (195), Expect = 3e-18
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV-----GVYISRVEEGSIAERAGLRPGDSILQ 258
T+ + R G GI + GG + G++ISRV E A RAG+R GD +L+
Sbjct: 4 ELTLTILRQ---TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLE 60
Query: 259 VNGIPFTGISHEEALKM 275
VNG+ G H EA++
Sbjct: 61 VNGVALQGAEHHEAVEA 77
Score = 42.7 bits (101), Expect = 2e-05
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEY------NLGIFITGVDKDSVAERAGLLV 413
+ + + G LG+ I GG + GIFI+ V ++ A RAG+ V
Sbjct: 4 ELTLTILRQTG-GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRV 54
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 79.0 bits (195), Expect = 3e-18
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG------VGVYISRVEEGSIAERAGLRPGDSILQ 258
+ + + + N FG ++ + + +++RV E S A+ AGL PGD+I
Sbjct: 6 KVLTLEK--GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIAS 63
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTV 297
VNG+ GI H E + + + S L +
Sbjct: 64 VNGLNVEGIRHREIVDI----------IKASGNVLRLET 92
Score = 43.1 bits (102), Expect = 1e-05
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 369 RKVELNIEPGQSLGLMIRGGV-------EYNLGIFITGVDKDSVAERAGLLV 413
+ + L Q+ G I+ + F+ V + S A+ AGL
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTP 57
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 78.9 bits (195), Expect = 3e-18
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNG 261
TI +++ G G+ + GG++ + I V E A + G L GD IL+VNG
Sbjct: 4 CETTIEISKG---RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 262 IPFTGISHEEALKMCFFEGYKEGQMLKSN-RELSMTVRSPSIPPQAPR 308
I +H+EA+ +L+ + + +T+ P ++ R
Sbjct: 61 IDLRKATHDEAI-----------NVLRQTPQRVRLTLYRDEAPYKSTR 97
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNL-GIFITGVDKDSVAERAGLL 412
+E++ LGL I GG + L I I V ++ A + G L
Sbjct: 6 TTIEISKGRT-GLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRL 49
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 78.5 bits (194), Expect = 3e-18
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R + + + ++G+G ++ G G I +E GS AE AGL+ D ++ VNG
Sbjct: 7 RVVVIKKG---SNGYGFYLRAGPEQKGQ--IIKDIEPGSPAEAAGLKNNDLVVAVNGKSV 61
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
+ H+ ++M + K + ++ V
Sbjct: 62 EALDHDGVVEM----------IRKGGDQTTLLVLDK 87
Score = 40.0 bits (94), Expect = 1e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R V + G +R G E G I ++ S AE AGL
Sbjct: 7 RVVVIKKGS-NGYGFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKN 49
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 78.5 bits (194), Expect = 3e-18
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G + GG + + +++V E AE A LRPGD I+ +NG + H EA
Sbjct: 17 PWGFRISGGRDF-HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSK-- 73
Query: 278 FEGYKEGQMLKSNRELSMTVRSPSIP 303
+ +S L + + S P
Sbjct: 74 --------IRQSASPLRLQLDRSSGP 91
Score = 49.2 bits (118), Expect = 7e-08
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ +++ G I GG +++ I +T V + AE A L
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRP 50
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 78.0 bits (193), Expect = 3e-18
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
VR++ + R G+G + G A +S V GS A+ GLR GD IL VN I
Sbjct: 3 VRSVEVARG---RAGYGFTLSGQA-----PCVLSCVMRGSPADFVGLRAGDQILAVNEIN 54
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
SHE+ +K+ + K + L M +
Sbjct: 55 VKKASHEDVVKL----------IGKCSGVLHMVIAEG 81
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
VR VE+ G + G ++ V + S A+ GL
Sbjct: 3 VRSVEVARGRA-GYGFTLSGQ----APCVLSCVMRGSPADFVGLRA 43
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 79.0 bits (195), Expect = 4e-18
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 185 HHHHPRHRRLTPPDIDQLP--VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVE 240
HHHH L ++ + +N+ + D G+ V GGA++ + +Y+ VE
Sbjct: 4 HHHHSSGVDLGTENLYFQSMHEKVVNIQK--DPGESLGMTVAGGASHREWDLPIYVISVE 61
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G + R G ++ GD +L V+G+ T +S EA+ +
Sbjct: 62 PGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVAL 97
Score = 47.0 bits (112), Expect = 8e-07
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 349 PPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY---NLGIFITGVDKDSV 405
+ + V + +PG+SLG+ + GG + +L I++ V+ V
Sbjct: 6 HHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGV 65
Query: 406 AERAGLL 412
R G +
Sbjct: 66 ISRDGRI 72
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 78.6 bits (194), Expect = 5e-18
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 184 EHHHHPRHRRLTPPDIDQLP---VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVE 240
HHHH + T+ + R GFG ++GG + +Y+ R+
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMDFYTVELERG---AKGFGFSLRGGREY-NMDLYVLRLA 57
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
E AER+G +R GD IL++NG + H A+++
Sbjct: 58 EDGPAERSGKMRIGDEILEINGETTKNMKHSRAIEL 93
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 339 DYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFIT 398
+ S + + ++ VEL G +RGG EYN+ +++
Sbjct: 5 HHHSSGVDLGTENLYFQSMDF---------YTVELERGAK-GFGFSLRGGREYNMDLYVL 54
Query: 399 GVDKDSVAERAGLL 412
+ +D AER+G +
Sbjct: 55 RLAEDGPAERSGKM 68
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 78.1 bits (193), Expect = 5e-18
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAG-LRPGDSIL 257
+ + +++ FGIC+ G G++I + S A G L+ GD IL
Sbjct: 6 IHMVTLDK--TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSP 300
+NG + + + ++K ++ ++ + +++
Sbjct: 64 SLNGKDVRNSTEQAVI-----------DLIKEADFKIELEIQTF 96
Score = 45.8 bits (109), Expect = 1e-06
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYN------LGIFITGVDKDSVAERAGLL 412
+ + V L+ +S G+ I G + GIFI G+ DS A G L
Sbjct: 4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRL 56
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 77.7 bits (192), Expect = 6e-18
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
+ + + +G+G + PG +I V++G A+ AGL D I++VNG+
Sbjct: 5 KLCRLAKG---ENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
+E+ + + S + +++ V
Sbjct: 60 LDEPYEKVVDR----------IQSSGKNVTLLVCGK 85
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ L G + G FI V K A+ AGL
Sbjct: 5 KLCRLAKGEN-GYGFHLNAIRGLP-GSFIKEVQKGGPADLAGLED 47
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 77.4 bits (191), Expect = 8e-18
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCF 277
+G + GG + + ISRV GS A A L GD I ++G + ++H EA
Sbjct: 14 PWGFRLVGGKDF-EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNR-- 70
Query: 278 FEGYKEGQMLKSNRELSMTVRSPS 301
+ L++TV
Sbjct: 71 --------IKGCTDNLTLTVARSE 86
Score = 46.6 bits (111), Expect = 6e-07
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 371 VELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+++++ G + GG ++ + I+ V S A A L +
Sbjct: 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCI 47
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 77.8 bits (192), Expect = 8e-18
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R + + +G +K GV Y++ + +A RAG+ D +++VNG
Sbjct: 10 RLCYLVKE---GGSYGFSLKTVQGKKGV--YMTDITPQGVAMRAGVLADDHLIEVNGENV 64
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLP 313
SHEE ++ + KS + + + P
Sbjct: 65 EDASHEEVVEK----------VKKSGSRVMFLLVDKETDKRHVEQKSGP 103
Score = 40.9 bits (96), Expect = 8e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R L E G S G ++ G+++T + VA RAG+L
Sbjct: 10 RLCYLVKEGG-SYGFSLKTVQGKK-GVYMTDITPQGVAMRAGVLA 52
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 77.0 bits (190), Expect = 1e-17
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 23/110 (20%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
R I + R +D GFG + + V + V+ G AERAGL+ D++LQ+N P
Sbjct: 4 YRQITIPRGKD---GFGFTICCDS-----PVRVQAVDSGGPAERAGLQQLDTVLQLNERP 55
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLP 313
E + E+ + V P+ P P
Sbjct: 56 VEHWKCVELAHE----------IRSCPSEIILLVWRMV-----PQVKPGP 90
Score = 34.3 bits (79), Expect = 0.012
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R++ + G I + + VD AERAGL
Sbjct: 4 YRQITIPRGKD-GFGFTICCDS----PVRVQAVDSGGPAERAGLQQ 44
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 77.1 bits (190), Expect = 1e-17
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 216 NHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
GI ++GGAN I ++ G A G L+ G IL+VNG+ G H EA +
Sbjct: 16 AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAAR 75
Query: 275 MCFFEGYKEGQMLKSNRELSMTVRSPSIPP 304
+ E K + V + P
Sbjct: 76 II-----AEAFKTKDRDYIDFLVTEFNSGP 100
Score = 40.9 bits (96), Expect = 8e-05
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLG-IFITGVDKDSVAERAGLL 412
SS + V + + +LG+ I GG I + + A G L
Sbjct: 2 SSGSSGTLVRV-KKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQL 51
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 77.1 bits (190), Expect = 1e-17
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 20/110 (18%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDS 255
D + I + R +D GFG + + V + V+ G AERAGL+ D+
Sbjct: 8 EGDPENGEKLQITIRRGKD---GFGFTICCDS-----PVRVQAVDSGGPAERAGLQQLDT 59
Query: 256 ILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSN-RELSMTVRSPSIPP 304
+LQ+N P E ++S E+ + V S P
Sbjct: 60 VLQLNERPVEHWKCVELA-----------HEIRSCPSEIILLVWRVSGPS 98
Score = 33.9 bits (78), Expect = 0.017
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 360 SARSSKDTVRKVELNIEPGQS-LGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
S + K+++ I G+ G I + + VD AERAGL
Sbjct: 6 SGEGDPENGEKLQITIRRGKDGFGFTICCDS----PVRVQAVDSGGPAERAGLQQ 56
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 78.1 bits (192), Expect = 1e-17
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 181 GSEEHHHHPRHRRLTPPDIDQ---LPVRTINMNRSQDANHGFGICVKGGANNPG------ 231
GS HHHH L P + +T+ + + + GFG ++G
Sbjct: 2 GSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKD--SEGFGFVLRGAKAQTPIEEFTP 59
Query: 232 -----VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQM 286
Y+ V+EG +A RAGLR GD +++VNG + H + + M +
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM----------I 109
Query: 287 LKSNRELSMTVRSPSIPPQ 305
+ L + V + P
Sbjct: 110 RQGGNTLMVKVVMVTRHPD 128
Score = 41.5 bits (97), Expect = 8e-05
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGV------------EYNLGI 395
P PR + S K+ + V L + + G ++RG +
Sbjct: 10 HSQDPLVPRGSGSDYIIKE--KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQ 67
Query: 396 FITGVDKDSVAERAGLLV 413
++ VD+ VA RAGL +
Sbjct: 68 YLESVDEGGVAWRAGLRM 85
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 79.8 bits (197), Expect = 2e-17
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
+ + + + G+ V GG + G +S + +G IA R+ L GD I VNGI
Sbjct: 8 STVVELMKKE--GTTLGLTVSGGIDKDG-KPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMR 321
H+E + + + + + V P + + T+
Sbjct: 65 NLAKFRHDEIISL----------LKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLH 113
Score = 76.7 bits (189), Expect = 2e-16
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 160 LSPEQVLKMLTSGGGGKKSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGF 219
++++ +L K E + + +++ + F
Sbjct: 69 FRHDEIISLL------KNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKE---GNTF 119
Query: 220 GICVKGGANNP---GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G ++GGA++ V I+ V G A+R G ++PGD +L V+GI G +H EA+
Sbjct: 120 GFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM-- 177
Query: 276 CFFEGYKEGQMLKSNR-ELSMTV-RSPSIP 303
+LK E ++ + S+
Sbjct: 178 ---------SILKQCGQEATLLIEYDVSVM 198
Score = 50.9 bits (122), Expect = 1e-07
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S VEL + G +LGL + GG++ + ++ + + +A R+ L
Sbjct: 3 GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQL 52
Score = 42.8 bits (101), Expect = 7e-05
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 341 ARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGV----EYNLGIF 396
+ + PP S +V L+ + G + G +IRGG + +
Sbjct: 81 VGERVVLEVEYELPPVS-IQGSSVMFRTVEVTLH-KEGNTFGFVIRGGAHDDRNKSRPVV 138
Query: 397 ITGVDKDSVAERAGLL 412
IT V A+R G +
Sbjct: 139 ITCVRPGGPADREGTI 154
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 76.6 bits (189), Expect = 2e-17
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R + + + ++G+G ++ G G I +E GS AE AGL+ D ++ VNG
Sbjct: 8 RVVVIKKG---SNGYGFYLRAGPEQKGQ--IIKDIEPGSPAEAAGLKNNDLVVAVNGKSV 62
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPA 317
+ H+ ++M + K + ++ V + +A + L P +
Sbjct: 63 EALDHDGVVEM----------IRKGGDQTTLLV----LDKEAESIYSLSGPSS 101
Score = 40.8 bits (96), Expect = 7e-05
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
SS + R V + G +R G E G I ++ S AE AGL
Sbjct: 2 SSGSSGRVVVIKKGS-NGYGFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKN 50
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 77.1 bits (190), Expect = 2e-17
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 185 HHHHPRHRRLTPPDIDQL----PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVE 240
HHHH + + + + + DA + GI + GGA +YI +V
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMVPGKVTLQK--DAQNLIGISIGGGAQY-CPCLYIVQVF 58
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ + A G + GD I VNG G + E KM
Sbjct: 59 DNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKM 94
Score = 49.8 bits (119), Expect = 8e-08
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
KV L + +G+ I GG +Y ++I V ++ A G +
Sbjct: 24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTV 69
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 77.1 bits (190), Expect = 2e-17
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
+ + ++ + GI + + + I R++ S+ +R+G L PGD IL ++G
Sbjct: 16 PLMVEIVKTPGS--ALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPA 317
S EA K+ + + ++ + + P P P +
Sbjct: 74 SMEHCSLLEATKL----------LASISEKVRLEILPV--PQSQRPLRPSSGPSS 116
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYN-LGIFITGVDKDSVAERAGLL 412
VE+ PG +LG+ + N I I + SV +R+G L
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGAL 61
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 76.2 bits (188), Expect = 2e-17
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
L R M + G+G + + PG +I V+ S AE +GLR D I+
Sbjct: 4 PFTMLRPRLCTMKKG---PSGYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIV 58
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP 300
+VNG+ G H + + + E + V
Sbjct: 59 EVNGVCMEGKQHGDVVSA----------IRAGGDETKLLVVDR 91
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R + P G + G FI VD DS AE +GL
Sbjct: 11 RLCTMKKGP-SGYGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRA 53
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 76.7 bits (189), Expect = 3e-17
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 185 HHHHPRHRRLTPPDIDQLP--VRTINMNRSQDANHGFGICVKGGANNPG--------VGV 234
HHHH L ++ R + + R + + GI + GG G+
Sbjct: 4 HHHHSSGVDLGTENLYFQSMQPRRVELWR--EPSKSLGISIVGGRGMGSRLSNGEVMRGI 61
Query: 235 YISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+I V E S A + G L+PGD I++V+G+ SHE+A++
Sbjct: 62 FIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA 103
Score = 49.4 bits (118), Expect = 1e-07
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 348 PPPPPPPPRWNYSARSSKDT-VRKVELNIEPGQSLGLMIRGGV---------EYNLGIFI 397
+ R+VEL EP +SLG+ I GG E GIFI
Sbjct: 4 HHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFI 63
Query: 398 TGVDKDSVAERAGLL 412
V +DS A + G L
Sbjct: 64 KHVLEDSPAGKNGTL 78
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 76.3 bits (188), Expect = 4e-17
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
R +++ + +G ++ + G I +EEGS AE+AGL GD +L++NG+
Sbjct: 14 PRECKLSKQE--GQNYGFFLRIEKDTDGH--LIRVIEEGSPAEKAGLLDGDRVLRINGVF 69
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNH 310
H + +++ + KS +++ V +A +N
Sbjct: 70 VDKEEHAQVVEL----------VRKSGNSVTLLVLDGDSYEKAVKNQ 106
Score = 47.8 bits (114), Expect = 3e-07
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
S +S R+ +L+ + GQ+ G +R + + G I +++ S AE+AGLL
Sbjct: 6 SGMASTFNPRECKLSKQEGQNYGFFLRIEKDTD-GHLIRVIEEGSPAEKAGLLD 58
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 76.4 bits (188), Expect = 6e-17
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 178 SAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQ-------DANHGFGICVKGGANNP 230
S+ S H P + I +N+ D+ G+ V GG
Sbjct: 2 SSGSSGHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTE 61
Query: 231 G--VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ +I++V++GS+A+ G LRPGD +L+ NG G + EE +
Sbjct: 62 SGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Score = 43.6 bits (103), Expect = 1e-05
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 349 PPPPPPPRWNYSARSSKDT--------VRKVELNIEPGQSLGLMIRGGVEYN---LGIFI 397
P W S + ++ + + G LGL + GG L FI
Sbjct: 10 HSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFI 69
Query: 398 TGVDKDSVAERAGLL 412
T V K S+A+ G L
Sbjct: 70 TKVKKGSLADTVGHL 84
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 76.0 bits (187), Expect = 6e-17
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 191 HRRLTPPDIDQLP--VRTINMNRSQDANHGFGICVKGGA--------NNPGVGVYISRVE 240
+ D+D LP R + + + G ++ G+ G++ISR+
Sbjct: 15 RPVSSIIDVDILPETHRRVRLCKYGT-EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLV 73
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRS 299
G +A+ G L D +L+VNGI +G S ++ M M+ ++R L +TVR
Sbjct: 74 PGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDM----------MIANSRNLIITVRP 123
Query: 300 PS 301
+
Sbjct: 124 AN 125
Score = 46.0 bits (109), Expect = 2e-06
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 341 ARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELN-IEPGQSLGLMIRGGV---------E 390
VI MP P +T R+V L + LG IR G E
Sbjct: 4 PHIVISMPQDFRPVSS-IIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLE 62
Query: 391 YNLGIFITGVDKDSVAERAGLL 412
GIFI+ + +A+ GLL
Sbjct: 63 KVPGIFISRLVPGGLAQSTGLL 84
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 75.2 bits (185), Expect = 7e-17
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R +++ + +G ++ + G I +EEGS AE+AGL GD +L++NG+
Sbjct: 3 RESKLSKQE--GQNYGFFLRIEKDTDGH--LIRVIEEGSPAEKAGLLDGDRVLRINGVFV 58
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNH 310
H + +++ + KS +++ V +A +N
Sbjct: 59 DKEEHAQVVEL----------VRKSGNSVTLLVLDGDSYEKAVKNQ 94
Score = 45.5 bits (108), Expect = 2e-06
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R+ +L+ + GQ+ G +R + G I +++ S AE+AGLL
Sbjct: 3 RESKLSKQEGQNYGFFLRIE-KDTDGHLIRVIEEGSPAEKAGLLD 46
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 75.2 bits (185), Expect = 7e-17
Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG------VGVYISRVEEGSIAERAGLRPGDSILQ 258
+ + + + N FG ++ + I +++E S A AGL+ GD +
Sbjct: 17 KLVTVEKQ--DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLAN 74
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTV 297
+NG+ G ++++ + + + S L++
Sbjct: 75 INGVSTEGFTYKQVVDL----------IRSSGNLLTIET 103
Score = 42.1 bits (99), Expect = 3e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYN-------LGIFITGVDKDSVAERAGLLV 413
+ V + + ++ G I+ N + I + +DS A AGL
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQA 68
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 74.6 bits (184), Expect = 7e-17
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
TI + + G G+ + G N+ GV ++S + +G IA+ G L GD IL VNG
Sbjct: 5 TLTIGLQK--KPGKGLGLSIVGKRNDTGV--FVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 263 PFTGISHEEALKM 275
+ E +
Sbjct: 61 DVRNATQEAVAAL 73
Score = 45.3 bits (108), Expect = 2e-06
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 364 SKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S + L +PG+ LGL I G + G+F++ + K +A+ G L
Sbjct: 1 SMSDTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRL 48
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 77.5 bits (191), Expect = 9e-17
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNP----GVGVYISRVEEGSIAERAG-LRPGDSILQ 258
I + R N G G + GG +NP ++I+++ G A + G LR DSIL
Sbjct: 6 YEEITLERG---NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPA 317
VN + ++H A++ + ++ + + V P + L P
Sbjct: 63 VNEVDVREVTHSAAVEA----------LKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111
Score = 73.2 bits (180), Expect = 3e-15
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSIL 257
P + + G G + GG N + +Y++++ EG A + G L+ GD IL
Sbjct: 97 PAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKIL 156
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPP 304
VN + + HE+A+ LK + + + V PS
Sbjct: 157 AVNSVGLEDVMHEDAV-----------AALKNTYDVVYLKVAKPSNAE 193
Score = 41.7 bits (98), Expect = 1e-04
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNL-----GIFITGVDKDSVAERAGLL 412
S ++ L LG I GG + IFIT + A + G L
Sbjct: 1 SGSMEYEEITLERGNS-GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRL 54
Score = 35.1 bits (81), Expect = 0.026
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 378 GQSLGLMIRGGVEYN-----LGIFITGVDKDSVAERAGLL 412
+ LG I GGV I++T + + A + G L
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRL 149
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 75.7 bits (186), Expect = 1e-16
Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 25/130 (19%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
L R M + G+G + + PG +I V+ S AE +GLR D I+
Sbjct: 4 PFTMLRPRLCTMKKG---PSGYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIV 58
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSP----------SIPPQAP 307
+VNG+ G H + + + E + V IP Q
Sbjct: 59 EVNGVCMEGKQHGDVVSA----------IRAGGDETKLLVVDRETDEFFKKCRVIPSQEH 108
Query: 308 RNHPLPPPPA 317
N PLP P
Sbjct: 109 LNGPLPVPFT 118
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R + P G + G FI VD DS AE +GL
Sbjct: 11 RLCTMKKGP-SGYGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRA 53
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 74.9 bits (184), Expect = 1e-16
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG-----------VGVYISRVEEGSIAERAGLRPG 253
+T+ + + + GFG ++G Y+ V+EG +A RAGLR G
Sbjct: 9 KTVLLQKKD--SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66
Query: 254 DSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQ 305
D +++VNG + H + + M + + L + V + P
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNM----------IRQGGNTLMVKVVMVTRHPD 108
Score = 38.3 bits (89), Expect = 7e-04
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 369 RKVELNIEPGQSLGLMIRGGV------------EYNLGIFITGVDKDSVAERAGLLV 413
+ V L + + G ++RG + ++ VD+ VA RAGL +
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 75.3 bits (185), Expect = 1e-16
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
V ++ + + G G VK + P V IS + G AE++G ++ GD IL VN
Sbjct: 9 VISVRLFK--RKVGGLGFLVKERVSKPPV--IISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLK--------SNRELSMTVRSPSIPPQAPRNHPLPP 314
P +S++ AL++ G + L T P PL P
Sbjct: 65 PLVDLSYDSALEV--LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLGP 122
Query: 315 PP 316
P
Sbjct: 123 PT 124
Score = 38.3 bits (89), Expect = 0.001
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
V V L LG +++ V + I+ + + AE++GL+
Sbjct: 7 PNVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLI 52
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 74.3 bits (183), Expect = 1e-16
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
+ + +++ D+ GI + + PGV +I + EG +A + G L D +L +NG
Sbjct: 4 ILQVALHKR-DSGEQLGIKLVRRTDEPGV--FILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIP 303
+ E A Q+++ S +++T+ P P
Sbjct: 61 DLKYGTPELAA-----------QIIQASGERVNLTIARPGKP 91
Score = 39.6 bits (93), Expect = 2e-04
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 368 VRKVELN-IEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+ +V L+ + G+ LG+ + + G+FI + + +A + G L
Sbjct: 4 ILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRL 48
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 74.2 bits (183), Expect = 1e-16
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 216 NHGFGICVKGGANNP---GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEE 271
+ FG ++GGA++ V I+ V G A+R G ++PGD +L V+GI G +H E
Sbjct: 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 72
Query: 272 ALKM 275
A+ +
Sbjct: 73 AMSI 76
Score = 40.3 bits (95), Expect = 9e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGV----EYNLGIFITGVDKDSVAERAGLL 412
+V L+ E + G +IRGG + + IT V A+R G +
Sbjct: 4 TVEVTLHKEGN-TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTI 51
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.7 bits (184), Expect = 1e-16
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 184 EHHHHPRHRRLTPPDIDQLP---VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISR 238
HHHH L ++ ++I + R D G G + GG +P + +Y+
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMPQCKSITLERGPD---GLGFSIVGGYGSPHGDLPIYVKT 59
Query: 239 VEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
V A G L+ GD I+ VNG G++HEEA+ +
Sbjct: 60 VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 97
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGV---EYNLGIFITGVDKDSVAERAGLL 412
S + + L P LG I GG +L I++ V A G L
Sbjct: 21 QSMPQCKSITLERGPD-GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRL 72
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 74.8 bits (184), Expect = 1e-16
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG--------VGVYISRVEEGSIAER 247
P P R + + R + N GI + GG G++I +V E S A +
Sbjct: 8 PNFSHWGPPRIVEIFR--EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGK 65
Query: 248 AG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQ 305
L+ GD IL+V+G+ SH EA+ + +K + + V+S S P+
Sbjct: 66 TNALKTGDKILEVSGVDLQNASHSEAV-----------EAIKNAGNPVVFIVQSLSSTPR 114
Score = 47.1 bits (112), Expect = 8e-07
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 368 VRKVELNIEPGQSLGLMIRGGV---------EYNLGIFITGVDKDSVAERAGLL 412
R VE+ EP SLG+ I GG E GIFI V +DS A + L
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 73.9 bits (182), Expect = 2e-16
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
R I ++R + G G + GG G G++IS + G A+ +G LR GD IL VNG+
Sbjct: 12 PRRIVIHRG---STGLGFNIVGG--EXGEGIFISFILAGGPADLSGELRKGDQILSVNGV 66
Query: 263 PFTGISHEEALKM 275
SHE+A
Sbjct: 67 DLRNASHEQAAIA 79
Score = 43.8 bits (104), Expect = 7e-06
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
R++ ++ LG I GG E GIFI+ + A+ +G L
Sbjct: 12 PRRIVIHRGST-GLGFNIVGG-EXGEGIFISFILAGGPADLSGEL 54
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 74.0 bits (182), Expect = 2e-16
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG------VGVYISRVEEGSIAERAGLRPGDSILQ 258
I ++ S +G ++ G V + VE+GS A+ AGLR GD I
Sbjct: 4 PPIVIHSS---GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITH 60
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301
+NG G+ H + +++ +LKS ++S+ +
Sbjct: 61 INGESVLGLVHMDVVEL----------LLKSGNKISLRTTALE 93
Score = 35.8 bits (83), Expect = 0.004
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVEYN-------LGIFITGVDKDSVAERAGLLV 413
++R + G+ G +R Y + + V+ S A+ AGL
Sbjct: 1 SMRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRA 54
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.3 bits (183), Expect = 2e-16
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 185 HHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVE 240
HHHH L ++ + + + + G G + GG N + +Y++++
Sbjct: 4 HHHHSSGVDLGTENLYFQSMTVVEIKLFKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKII 62
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+G A++ G L+ GD +L VN ++HEEA+ +
Sbjct: 63 DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAI 98
Score = 36.2 bits (84), Expect = 0.004
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVE-----YNLGIFITGVDKDSVAERAGLL 412
+ TV +++L P LG I GGV + I++T + A++ G L
Sbjct: 17 NLYFQSMTVVEIKLFKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRL 73
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 73.4 bits (181), Expect = 2e-16
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
+ + ++ + G G + GG +YISRV G +A+R G L+ GD +L VNG+
Sbjct: 7 GVVELPKT---DEGLGFNIMGGKEQ-NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 62
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMTVRS 299
G HE+A+ ++LK+ + + + VRS
Sbjct: 63 VEGEQHEKAV-----------ELLKAAQGSVKLVVRS 88
Score = 44.2 bits (105), Expect = 4e-06
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
VEL LG I GG E N I+I+ V VA+R G L
Sbjct: 7 GVVELPKTDE-GLGFNIMGGKEQNSPIYISRVIPGGVADRHGGL 49
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.4 bits (183), Expect = 2e-16
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 202 LPVRTINMNR----SQDANHGFGICVKGGANNPG----VGVYISRVEEGSIAERAG-LRP 252
P I + R + +G GI + GG PG +G YI+++ G AE+ G L
Sbjct: 11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
Query: 253 GDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPP 304
G +L+ NGIP T ++EE + + + + E + VR
Sbjct: 71 GMQVLEWNGIPLTSKTYEEVQSI----------ISQQSGEAEICVRLDLNMS 112
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEY-----NLGIFITGVDKDSVAERAGLL 412
R + + G LG+ I GG E +G +I + AE+ G L
Sbjct: 19 TRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKL 68
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 74.4 bits (183), Expect = 2e-16
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 195 TPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPG 253
T +Q+ + + + R + + ++GG ++P V +S V EG AER G + G
Sbjct: 7 TMFSPEQIAGKDVRLLRIKK-EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKG 65
Query: 254 DSILQVNGIPFTGISHEEALKM 275
D I+ +NG T + EA
Sbjct: 66 DEIMAINGKIVTDYTLAEAEAA 87
Score = 35.1 bits (81), Expect = 0.009
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 358 NYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLG-IFITGVDKDSVAERAGLL 412
+S ++ I+ SL L + GGV+ +G + ++ V + AER G +
Sbjct: 8 MFSPEQIAGKDVRLLR-IKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGV 62
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 73.6 bits (181), Expect = 3e-16
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG-VGVYISRVEEGSIAERAG-LRPGDSILQVNG 261
+ T+ +N + + GI + G +N G G+YI + +G G + PGD +LQVN
Sbjct: 6 IITVTLNM--EKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 262 IPFTGISHEEALKM 275
+ F +S+++A+++
Sbjct: 64 MNFENMSNDDAVRV 77
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 364 SKDTVRKVELNIEPGQSLGLMIRGGVEY--NLGIFITGVDKDSVAERAGLL 412
S + V LN+E LG+ I G + GI+I + K G +
Sbjct: 2 SHMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRI 52
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 73.6 bits (181), Expect = 3e-16
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
I +++ G G+ + GG + P + I V E A R G L GD IL+VNG+
Sbjct: 18 EMIIEISKG---RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKS-NRELSMTVRSPSIPPQAPRNHP 311
SHEEA+ L+ +++ + V + + P
Sbjct: 75 DLRNSSHEEAI-----------TALRQTPQKVRLVVYRDEAHYRDEESGP 113
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNL-GIFITGVDKDSVA 406
P P +E++ LGL I GG + L I I V ++ A
Sbjct: 6 SGPATCPIVPG--------QEMIIEISKGRS-GLGLSIVGGKDTPLNAIVIHEVYEEGAA 56
Query: 407 ERAGLL 412
R G L
Sbjct: 57 ARDGRL 62
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 73.6 bits (181), Expect = 4e-16
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGD 254
P D R I +++ + G G + GG + G+ ++S + G A+ +G LR GD
Sbjct: 8 RPGGDAREPRKIILHKG---STGLGFNIVGGEDGEGI--FVSFILAGGPADLSGELRRGD 62
Query: 255 SILQVNGIPFTGISHEEALKM 275
IL VNG+ +HE+A
Sbjct: 63 RILSVNGVNLRNATHEQAAAA 83
Score = 39.3 bits (92), Expect = 3e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
RK+ L+ LG I GG E GIF++ + A+ +G L
Sbjct: 16 PRKIILHKGST-GLGFNIVGG-EDGEGIFVSFILAGGPADLSGEL 58
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 72.5 bits (178), Expect = 4e-16
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 26/116 (22%)
Query: 186 HHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIA 245
HHH H T V T+ + R D + G V+ G I + G IA
Sbjct: 1 HHH--HHLETMG-----NVTTVLIRR-PDLRYQLGFSVQNG--------IICSLMRGGIA 44
Query: 246 ERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPS 301
ER G+R G I+++NG HE+ + + + + E+ M +
Sbjct: 45 ERGGVRVGHRIIEINGQSVVATPHEKIVHI----------LSNAVGEIHMKTMPAA 90
Score = 32.4 bits (74), Expect = 0.055
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 376 EPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ LG ++ G+ I + + +AER G+ V
Sbjct: 21 DLRYQLGFSVQNGI-------ICSLMRGGIAERGGVRV 51
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 72.3 bits (178), Expect = 4e-16
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
RTI M++ D+ G K G I+ + + S A R GL +I ++NG
Sbjct: 6 RTITMHK--DSTGHVGFIFKNG--------KITSIVKDSSAARNGLLTEHNICEINGQNV 55
Query: 265 TGISHEEALKM 275
G+ + +
Sbjct: 56 IGLKDSQIADI 66
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R + ++ + +G + + G IT + KDS A R GLL
Sbjct: 6 RTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLLT 43
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 73.4 bits (180), Expect = 4e-16
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 21/123 (17%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA--GLRPG 253
I + I M D N FG VKGG + + V +SRV G+ A+ L G
Sbjct: 8 NGGIPHDNLVLIRMKP--DENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEG 64
Query: 254 DSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKS-----NRELSMTVRSPSIPPQAPR 308
D ++ +NG +H++ + +K+ + EL + VR ++
Sbjct: 65 DQVVLINGRDIAEHTHDQVV-----------LFIKASCERHSGELMLLVRPNAVYDVVEE 113
Query: 309 NHP 311
+ P
Sbjct: 114 SGP 116
Score = 44.1 bits (104), Expect = 7e-06
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 365 KDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERA 409
D + + + + G ++GG + + + ++ V + A+
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLC 57
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 74.9 bits (184), Expect = 5e-16
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 202 LPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNG 261
+ R + + + D + G+ +K G+++ V+ S A GLR GD +LQ+NG
Sbjct: 3 MDPREVILCK--DQDGKIGLRLKSI----DNGIFVQLVQANSPASLVGLRFGDQVLQING 56
Query: 262 IPFTGISHEEALKM 275
G S ++A K+
Sbjct: 57 ENCAGWSSDKAHKV 70
Score = 48.3 bits (115), Expect = 7e-07
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
I+ + + S A R GL +I ++NG G+ + +
Sbjct: 108 NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 150
Score = 44.4 bits (105), Expect = 1e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R+V L + +GL ++ + GIF+ V +S A GL
Sbjct: 6 REVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRF 47
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 73.3 bits (180), Expect = 5e-16
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 214 DANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
+ G G + GGA+ + + RV +A + G ++ G+ +L +NG G +H +A
Sbjct: 24 EEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 83
Query: 273 LKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPP 315
L + + ++ + + + P+A + P
Sbjct: 84 LAI----------LRQAREPRQAVIVTRKLTPEAMPDLNSSGP 116
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNL-GIFITGVDKDSVAERAGLL 412
D + L+ E G LG + GG + I + V + +A + G +
Sbjct: 11 KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTI 61
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 72.9 bits (179), Expect = 5e-16
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
V ++ + + + G G VK + P V IS + G AE++G ++ GD IL VN
Sbjct: 2 VISVRLFKRK--VGGLGFLVKERVSKPPV--IISDLIRGGAAEQSGLIQAGDIILAVNDR 57
Query: 263 PFTGISHEEALKM 275
P +S++ AL++
Sbjct: 58 PLVDLSYDSALEV 70
Score = 39.8 bits (93), Expect = 2e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
V V L LG +++ V + I+ + + AE++GL+
Sbjct: 2 VISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLI 45
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 72.3 bits (178), Expect = 5e-16
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
+ I + R + GFG + GG PG +YI + A+ G LR GD ++ V+G P
Sbjct: 4 QDIFLWRKET---GFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTP 59
Query: 264 FTGISHEEALKM 275
G SH+ +++
Sbjct: 60 VIGKSHQLVVQL 71
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+ + L + G I GG E I+I + A+ G L
Sbjct: 4 QDIFLWRKET-GFGFRILGGNEPGEPIYIGHIVPLGAADTDGRL 46
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 79.6 bits (195), Expect = 6e-16
Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)
Query: 200 DQLPVRTINMNRSQDANHGFGICVKGGANNP----GVGVYISRVEEGSIAERAG-LRPGD 254
+ P + + G G + GG N +Y++++ EG A + G L+ GD
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 207
Query: 255 SILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPP 314
IL VN + + HE+A+ LK+ + V P
Sbjct: 208 KILAVNSVGLEDVMHEDAV-----------AALKNTYD---VVYLKVAKPSNAYLSDSYA 253
Query: 315 PPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDT-VRKVEL 373
PP T + + DY ++ P P P + R++ +
Sbjct: 254 PPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVI 313
Query: 374 NIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
LG I GG + GIFI+ + A+ +G L
Sbjct: 314 -HRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGEL 350
Score = 76.1 bits (186), Expect = 7e-15
Identities = 37/283 (13%), Positives = 70/283 (24%), Gaps = 26/283 (9%)
Query: 84 YSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYR--TQPSSTEYRSNSPSNNT 141
PG + V + + L N + N+
Sbjct: 178 QHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVY 237
Query: 142 SSSYRNT--------SSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHHPRHRR 193
+ + + T ++ G + + + P +
Sbjct: 238 LKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKD 297
Query: 194 LTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRP 252
L + R I ++R G G + GG + G+ +IS + G A+ +G LR
Sbjct: 298 LLGEEDIPREPRRIVIHRGST---GLGFNIVGGEDGEGI--FISFILAGGPADLSGELRK 352
Query: 253 GDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPL 312
GD IL VNG+ SHE+A + + + +++ +
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIA----------LKNAGQTVTIIAQYKPEEYSRFEAKIH 402
Query: 313 PPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPP 355
S
Sbjct: 403 DLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFL 445
Score = 70.7 bits (172), Expect = 4e-13
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 195 TPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNP----GVGVYISRVEEGSIAERAG- 249
++ I + R N G G + GG +NP ++I+++ G A + G
Sbjct: 51 VNGTEGEMEYEEITLERG---NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGR 107
Query: 250 LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRN 309
LR DSIL VN + ++H A++ + ++ + + V P +
Sbjct: 108 LRVNDSILFVNEVDVREVTHSAAVEA----------LKEAGSIVRLYVMRRKPPAEKVME 157
Query: 310 HPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPR 356
L P + Q P + Y +I
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSI-YVTKIIEGGAAHKDGRL 203
Score = 42.6 bits (99), Expect = 3e-04
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 302 IPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSA 361
+ + R PP + P P + + P + +
Sbjct: 7 VTAKKYRYQDEDTPP------------LKHSPAHLPNQANSPPVIVNTDTLEAPGYV-NG 53
Query: 362 RSSKDTVRKVELNIEPGQSLGLMIRGGVEYNL-----GIFITGVDKDSVAERAGLL 412
+ ++ L LG I GG + IFIT + A + G L
Sbjct: 54 TEGEMEYEEITLE-RGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRL 108
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 72.0 bits (177), Expect = 8e-16
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--------VGVYISRVEEGSIAERAG-LRPGD 254
R + + R + + GI + GG G++I V E S A + G L+PGD
Sbjct: 5 PRRVELWR--EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 62
Query: 255 SILQVNGIPFTGISHEEALKM 275
I++V+G+ SHE+A++
Sbjct: 63 RIVEVDGMDLRDASHEQAVEA 83
Score = 50.4 bits (121), Expect = 4e-08
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 368 VRKVELNIEPGQSLGLMIRGGV---------EYNLGIFITGVDKDSVAERAGLL 412
R+VEL EP +SLG+ I GG E GIFI V +DS A + G L
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTL 58
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 72.5 bits (178), Expect = 8e-16
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
R I ++R G G + GG + G+ +IS + G A+ +G LR GD IL VNG+
Sbjct: 15 PRRIVIHRGST---GLGFNIVGGEDGEGI--FISFILAGGPADLSGELRKGDQILSVNGV 69
Query: 263 PFTGISHEEALKM 275
SHE+A
Sbjct: 70 DLRNASHEQAAIA 82
Score = 40.9 bits (96), Expect = 1e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
R++ ++ LG I GG + GIFI+ + A+ +G L
Sbjct: 15 PRRIVIHRGST-GLGFNIVGGED-GEGIFISFILAGGPADLSGEL 57
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 71.9 bits (177), Expect = 8e-16
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG-VGVYISRVEEGSIAERAG-LRPGDSILQVNG 261
++ + R GFG+ + GG + G + + + + A+R G L GD +L +NG
Sbjct: 12 HFSVELVRG---YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68
Query: 262 IPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQA 306
G++H +A+ + ++ +L + +R P P +
Sbjct: 69 ESTQGLTHAQAV-----------ERIRAGGPQLHLVIRRPLSGPSS 103
Score = 39.2 bits (92), Expect = 3e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 360 SARSSKDT-VRKVELNIEPGQSLGLMIRGGVEY--NLGIFITGVDKDSVAERAGLL 412
S S + + VEL GL + GG + + + + G+ KD A+R G L
Sbjct: 3 SGSSGQASGHFSVELVRGYA-GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRL 57
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 75.2 bits (184), Expect = 9e-16
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
R M + G+G + + PG +I V+ S AE +GLR D I++VNG+
Sbjct: 11 RLCTMKKG---PSGYGFNLHSDKSKPGQ--FIRSVDPDSPAEASGLRAQDRIVEVNGVCM 65
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAY 324
G H + + + E + V + +P
Sbjct: 66 EGKQHGDVVSA----------IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPV 115
Query: 325 SWIDRQGRPCSPPLDYARSVIPMPPPPPPPPR 356
+ + + + + A + + P P
Sbjct: 116 PFTNGEIQKENSREALAEAALESPRPALVRSA 147
Score = 37.4 bits (86), Expect = 0.005
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
R + P G + G FI VD DS AE +GL
Sbjct: 11 RLCTMKKGP-SGYGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRA 53
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 72.1 bits (177), Expect = 1e-15
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 203 PVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGI 262
P R I+ G ++G V + ++ A AG + GD I+ + G+
Sbjct: 15 PPRGIHFTVE---EGDLGFTLRGNT-----PVQVHFLDPHCSASLAGAKEGDYIVSIQGV 66
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPP 315
++ E + ++LKS + ++ S+ H P
Sbjct: 67 DCKWLTVSEVM-----------KLLKSFGGEEVEMKVVSLLDSTSSMHNKSGP 108
Score = 35.2 bits (81), Expect = 0.009
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
SA R + +E G LG +RG + + +D A AG
Sbjct: 8 SASKRWSPPRGIHFTVEEG-DLGFTLRGNT----PVQVHFLDPHCSASLAGA 54
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 71.7 bits (176), Expect = 1e-15
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 24/120 (20%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG------VGVYISRVEEGSIAERAG-LRPGDSIL 257
+ ++R + N GFG + N P V I R+ +GS A+R L+ GD IL
Sbjct: 12 SDVVIHRKE--NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRIL 69
Query: 258 QVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPA 317
VNG + H + +K+ + + +++ + PQ N P P
Sbjct: 70 AVNGQSIINMPHADIVKL----------IKDAGLSVTLRII-----PQEELNSPSGPSSG 114
Score = 42.8 bits (101), Expect = 2e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGV-------EYNLGIFITGVDKDSVAERAGLL 412
S S V ++ + + G +I + + I + S A+R L
Sbjct: 3 SGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 71.2 bits (175), Expect = 1e-15
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
T++M + GFG ++GG + +Y+ R+ E A R G +R GD I+++NG
Sbjct: 12 YFTVDMEKG---AKGFGFSIRGGREYK-MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTV-RSPSIPP 304
++H A+ +++K R + + + R P
Sbjct: 68 STRDMTHARAI-----------ELIKSGGRRVRLLLKRGTGSGP 100
Score = 47.3 bits (113), Expect = 4e-07
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 360 SARSSKDT-VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S S +D V++ G IRGG EY + +++ + +D A R G +
Sbjct: 3 SGSSGQDFDYFTVDMEKGAK-GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRM 55
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 71.4 bits (175), Expect = 1e-15
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERA--GLRPG 253
I + I M D N FG VKGG + + V +SRV G+ A+ L G
Sbjct: 10 NGGIPHDNLVLIRMKP--DENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEG 66
Query: 254 DSILQVNGIPFTGISHEEALKM 275
D ++ +NG +H++ +
Sbjct: 67 DQVVLINGRDIAEHTHDQVVLF 88
Score = 46.7 bits (111), Expect = 6e-07
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAE 407
P P P + D + + + + G ++GG + + + ++ V + A+
Sbjct: 2 SSPEKPTP----NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPAD 57
Query: 408 RA 409
Sbjct: 58 LC 59
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 71.2 bits (175), Expect = 2e-15
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 216 NHGFGICVKGGANNP----GVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
N G G + GG +NP G++I+++ G A G L D +L+VN + + + H
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 271 EALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQ 305
A++ + ++ + + VR PP+
Sbjct: 74 RAVEA----------LKEAGPVVRLVVRRRQPPPE 98
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEY-----NLGIFITGVDKDSVAERAGLL 412
++ L LG I GG++ + GIFIT + A G L
Sbjct: 5 YEEIVLERGNS-GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRL 53
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 71.3 bits (175), Expect = 2e-15
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 195 TPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV-----GVYISRVEEGSIAERAG 249
+ + T+ + + D+ GFGI V GG +NP + IS V G A+
Sbjct: 6 SGMEEVIWEQYTVTLQK--DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL 62
Query: 250 LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQAPR 308
L+ D ++ VNG P + H A+ Q L+ S + ++ V+ P AP
Sbjct: 63 LQENDRVVMVNGTPMEDVLHSFAV-----------QQLRKSGKIAAIVVKRPRKVQVAPL 111
Query: 309 NHP 311
+ P
Sbjct: 112 SGP 114
Score = 35.5 bits (82), Expect = 0.007
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEY------NLGIFITGVDKDSVAE 407
V L + + G+ + GG + I I+ V A+
Sbjct: 16 YTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD 60
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 70.9 bits (174), Expect = 2e-15
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAGLRPGDSILQV 259
T+ ++R GFGI + GG +NP + IS V +G AE L+ D + V
Sbjct: 9 HTVTLHR--APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMV 65
Query: 260 NGIPFTGISHEEALKM 275
NG+ + H A++
Sbjct: 66 NGVSMDNVEHAFAVQQ 81
Score = 38.1 bits (89), Expect = 7e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEY------NLGIFITGVDKDSVAE 407
V L+ PG G+ I GG + I I+ V K AE
Sbjct: 9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE 53
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 71.4 bits (175), Expect = 2e-15
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 191 HRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG-VGVYISRVEEGSIAERAG 249
H+ + +++ + +++ R ++ G+ V ++ +G+YIS ++ SIA + G
Sbjct: 10 HQEMDREELE---LEEVDLYRM-NSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDG 65
Query: 250 -LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPR 308
+R GD I+Q+NGI AL + N+ S+ + P +
Sbjct: 66 RIREGDRIIQINGIEVQNREEAVAL-----------LTSEENKNFSLLIARPELQLDEGW 114
Query: 309 NHPLPPPPA 317
P +
Sbjct: 115 MDDDSGPSS 123
Score = 38.3 bits (89), Expect = 8e-04
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 368 VRKVELN-IEPGQSLGLMIRGGV--EYNLGIFITGVDKDSVAERAGLL 412
+ +V+L + LGL + E ++GI+I+ +D +S+A + G +
Sbjct: 20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRI 67
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 70.9 bits (174), Expect = 3e-15
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
+ + + DA + GI + GGA +YI +V + + A G + GD I VNG
Sbjct: 21 GKVTLQK--DAQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 77
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMTVRSPSIPPQAPRNHPLPPPPAWT 319
G + E +M++ + E+++ P+ P
Sbjct: 78 IKGKTKVEVA-----------KMIQEVKGEVTIHYNKLQADPKQLEVLFNGPGIESV 123
Score = 48.6 bits (116), Expect = 2e-07
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
KV L + +G+ I GG +Y ++I V ++ A G +
Sbjct: 18 TVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTV 64
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 70.4 bits (173), Expect = 3e-15
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRP 252
P D I + + +G G+ + +G+Y+ V +G A+ G L
Sbjct: 2 PLGSDHKEPEIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAA 59
Query: 253 GDSILQVNGIPFTGISHEEALKM 275
GD +L V+G G+S E A ++
Sbjct: 60 GDQLLSVDGRSLVGLSQERAAEL 82
Score = 35.8 bits (83), Expect = 0.005
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 369 RKVELNIEPGQSLGLMIRGGV---EYNLGIFITGVDKDSVAERAGLL 412
+ + ++ +GL I + LGI++ V K A+ G L
Sbjct: 11 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 70.1 bits (172), Expect = 3e-15
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
V+ I + ++++ G +K + ++R+ G A+R+G + GD + +VNGI
Sbjct: 5 VKIIRLVKNRE---PLGATIKKDEQTGAI--IVARIMRGGAADRSGLIHVGDELREVNGI 59
Query: 263 PFTGISHEEALKM 275
P EE +++
Sbjct: 60 PVEDKRPEEIIQI 72
Score = 38.5 bits (90), Expect = 4e-04
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
D+V+ + L ++ + LG I+ E I + + + A+R+GL+
Sbjct: 3 DSVKIIRL-VKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLI 47
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 69.6 bits (171), Expect = 4e-15
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
GFG V GG + P + I + A G + GD I+ VN G +H + +K+
Sbjct: 12 GFGFTVVGG-DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI- 69
Query: 277 FFEGYKEGQMLK 288
F+ G +
Sbjct: 70 -FQSIPIGASVD 80
Score = 36.9 bits (86), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 378 GQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+ G + GG E + + I + D A G +
Sbjct: 10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKM 44
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 70.0 bits (172), Expect = 4e-15
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
+++ R GFG + GG PG + I V A+R G L PGD ++ V+GI
Sbjct: 10 ELDVHLRRM---ESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65
Query: 263 PFTGISHEEALKM 275
P G +H + +
Sbjct: 66 PVAGKTHRYVIDL 78
Score = 39.6 bits (93), Expect = 2e-04
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S+ SS V L G I GG E I I V A+R G L
Sbjct: 2 SSGSSGYKELDVHLRRMES-GFGFRILGGDEPGQPILIGAVIAMGSADRDGRL 53
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 70.6 bits (173), Expect = 5e-15
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNP---GVGVYISRVEEGSIAERAG-LRPGDSILQVN 260
+ + D GFGI ++G IS +E S AER G L+ GD ++ +N
Sbjct: 17 TEVVLTA--DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN 74
Query: 261 GIPFTGISHEEALKM 275
GIP + EEA ++
Sbjct: 75 GIPTEDSTFEEANQL 89
Score = 44.5 bits (105), Expect = 6e-06
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 369 RKVELNIEPGQSLGLMIRGGV----EYNLGIFITGVDKDSVAERAGLL 412
+V L +P G+ ++G V + I+ ++ DS AER G+L
Sbjct: 17 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 69.7 bits (171), Expect = 5e-15
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQ 258
+ I + + G G + GG N + +Y++++ EG A + G L+ GD +L
Sbjct: 4 IMEIKLIKG---PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKS-NRELSMTVRSPSIPPQAPRNH 310
VN + ++HEEA+ LK+ + + + V P+ R+H
Sbjct: 61 VNSVSLEEVTHEEAV-----------TALKNTSDFVYLKVAKPT-SMYISRHH 101
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 366 DTVRKVELNIEPGQSLGLMIRGGVE-----YNLGIFITGVDKDSVAERAGLL 412
+ + +++L P LG I GGV + I++T + + A + G L
Sbjct: 2 EKIMEIKLIKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKL 52
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 69.6 bits (171), Expect = 5e-15
Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV---GVYISRVEEGSIAERAG-LRPGDSILQV 259
+ + ++ G GI + G + + G+++ + + S E G ++ GD I+ V
Sbjct: 5 TFDVELTKN---VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Query: 260 NGIPFTGISHEEALKM 275
+G G ++++A+++
Sbjct: 62 DGTNLQGFTNQQAVEV 77
Score = 37.6 bits (88), Expect = 0.001
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGV----EYNLGIFITGVDKDSVAERAGLL 412
VEL LG+ I G + GIF+ + K S E G +
Sbjct: 5 TFDVELTKNVQ-GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRI 52
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 69.7 bits (171), Expect = 5e-15
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 216 NHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHE 270
G G + GG + V G+Y+SR++E A G L+ GD IL VNG + H+
Sbjct: 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 76
Query: 271 EALKM 275
+A+ +
Sbjct: 77 DAVDL 81
Score = 38.5 bits (90), Expect = 5e-04
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVEY-----NLGIFITGVDKDSVAERAGLL 412
T ++ L P LG I GG + + GI+++ + ++ A G L
Sbjct: 7 TEEEINLTRGPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRL 56
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 69.3 bits (170), Expect = 6e-15
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
+ T+ + R GI + G P + IS + +G +AER G + GD IL +N
Sbjct: 6 IYTVELKRY---GGPLGITISGTEE-PFDPIIISSLTKGGLAERTGAIHIGDRILAINSS 61
Query: 263 PFTGISHEEALKM 275
G EA+ +
Sbjct: 62 SLKGKPLSEAIHL 74
Score = 47.7 bits (114), Expect = 2e-07
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
SS + VEL G LG+ I G E I I+ + K +AER G +
Sbjct: 1 SSGAIIYTVEL-KRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAI 49
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 70.2 bits (172), Expect = 7e-15
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 178 SAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYIS 237
S + + R+ L P ++ I + + +G G+ + G + + +++
Sbjct: 6 SGDAFTDQKIRQRYADL-PGEL-----HIIELEKD---KNGLGLSLAGNKDRSRMSIFVV 56
Query: 238 RVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ A G +R GD +L++N G SH+ A +
Sbjct: 57 GINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAI 95
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 346 PMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYN-LGIFITGVDKDS 404
+ + +EL + LGL + G + + + IF+ G++ +
Sbjct: 4 GSSGDAFTDQKIRQRYADLPGELHIIELEKDKN-GLGLSLAGNKDRSRMSIFVVGINPEG 62
Query: 405 VAERAGLL 412
A G +
Sbjct: 63 PAAADGRM 70
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 69.2 bits (170), Expect = 7e-15
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQ 258
+ +N+ + G G + GG N + +YI+++ EG A++ G L+ GD +L
Sbjct: 4 IMEVNLLKG---PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60
Query: 259 VNGIPFTGISHEEALKM 275
VN + HEEA+
Sbjct: 61 VNNTNLQDVRHEEAVAS 77
Score = 36.1 bits (84), Expect = 0.003
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVE-----YNLGIFITGVDKDSVAERAGLL 412
T+ +V L P LG I GG+ + I+IT + + A++ G L
Sbjct: 3 TIMEVNLLKGPK-GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRL 52
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 70.1 bits (172), Expect = 7e-15
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 177 KSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG--VGV 234
+ + HHH + + + +N+ + G G + G +
Sbjct: 2 RGSHHHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTE-GLGFSITSRDVTIGGSAPI 60
Query: 235 YISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
Y+ + A + G L+ GD +++VNG+ G S EE + +
Sbjct: 61 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSL 102
Score = 34.7 bits (80), Expect = 0.014
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPG-QSLGLMIRGGVEY---NLGIFITGVDKD 403
+ + ++K +++ + ++ G + LG I + I++ +
Sbjct: 9 HHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPR 68
Query: 404 SVAERAGLL 412
A + G L
Sbjct: 69 GAAIQDGRL 77
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 69.8 bits (171), Expect = 9e-15
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-L 250
D + + R GI + G G+Y+ V GS A G +
Sbjct: 8 GSDSSLFETYNVELVRKD--GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHI 65
Query: 251 RPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQAPRN 309
+ D I+ V+G+ G ++ + + ++L+ + + + +T+
Sbjct: 66 QVNDKIVAVDGVNIQGFANHDVV-----------EVLRNAGQVVHLTLVRRKTSSSTS-- 112
Query: 310 HPLPPP 315
PL PP
Sbjct: 113 -PLEPP 117
Score = 39.0 bits (91), Expect = 6e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYN-----LGIFITGVDKDSVAERAGLL 412
+ SS VEL + GQSLG+ I G V + GI++ V S A G +
Sbjct: 8 GSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHI 65
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 68.8 bits (169), Expect = 1e-14
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVN 260
+ + + ++ ++ GI V GG N G+Y+ V AE G + GD +L VN
Sbjct: 6 IFEVELAKN---DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 261 GIPFTGISHEEALKM 275
G+ G +H++A++
Sbjct: 63 GVSLEGATHKQAVET 77
Score = 39.1 bits (92), Expect = 2e-04
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEY---NLGIFITGVDKDSVAERAGLL 412
+ +VEL SLG+ + GGV + GI++ V AE G +
Sbjct: 6 IFEVELAKNDN-SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRI 52
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 69.4 bits (170), Expect = 1e-14
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LRPGDSILQ 258
IN+ R G G + GG + V G+Y+SR++E A G L+ GD IL
Sbjct: 18 EEEINLTRG---PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILS 74
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLKS-NRELSMTVRSPSIPPQAPRNHP 311
VNG + H++A+ + ++ +S+ V+ P + P
Sbjct: 75 VNGQDLKNLLHQDAV-----------DLFRNAGYAVSLRVQHRLQVQNGPISGP 117
Score = 35.9 bits (83), Expect = 0.006
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEY-----NLGIFITGVDKDSVAERAGLL 412
T ++ L P LG I GG + + GI+++ + ++ A G L
Sbjct: 10 GRVDYLVTEEEINLTRGPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRL 66
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 68.9 bits (169), Expect = 1e-14
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--------VGVYISRVEEGSIAERAG-LRPGD 254
+R + + ++ GI ++GGA G++IS+V A R G LR G
Sbjct: 10 LRELCIQKAP--GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67
Query: 255 SILQVNGIPFTGISHEEALKM 275
+L+VN G++H EA+++
Sbjct: 68 RLLEVNQQSLLGLTHGEAVQL 88
Score = 47.4 bits (113), Expect = 5e-07
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVE---------YNLGIFITGVDKDSVAERAG 410
S+ SS +R++ + PG+ LG+ IRGG + GIFI+ V A R G
Sbjct: 2 SSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61
Query: 411 LL 412
L
Sbjct: 62 RL 63
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 74.1 bits (181), Expect = 1e-14
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 198 DIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSIL 257
I + ++ + + G+ + GG + VG++++ V E S A + GL GD IL
Sbjct: 4 MILRPSMKLVKFRKGD----SVGLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQIL 56
Query: 258 QVNGIPFTGISHEEALKM 275
+VN + FT I EEA+
Sbjct: 57 RVNNVDFTNIIREEAVLF 74
Score = 43.7 bits (102), Expect = 8e-05
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 365 KDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ +++ V+ G S+GL + GG + +GIF+ GV +DS A + GL
Sbjct: 7 RPSMKLVK--FRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEE 51
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 68.6 bits (168), Expect = 1e-14
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 202 LPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVN 260
L +++ + A G+ + G I+ + +G E L+ GD I + N
Sbjct: 1 LEKFNVDLMK--KAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKFN 54
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQAPRNHPLPP 314
G G+ + + K +N ++SM V P P + + L P
Sbjct: 55 GDALEGLPFQVCY-----------ALFKGANGKVSMEVTRP--KPGSGGSGSLVP 96
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
V+L + G+ LGL + +G I + + E L
Sbjct: 3 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKL 44
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 68.2 bits (167), Expect = 1e-14
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
+ +N+ +S+D G+ + +I R+++G + + + GD I +NG
Sbjct: 7 KEVNVYKSED---SLGLTITDNGVGY---AFIKRIKDGGVIDSVKTICVGDHIESINGEN 60
Query: 264 FTGISHEEALKM 275
G H + K
Sbjct: 61 IVGWRHYDVAKK 72
Score = 30.9 bits (70), Expect = 0.23
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S K ++V + + SLGL I FI + V + +
Sbjct: 1 SMKGIEKEVNV-YKSEDSLGLTITDN--GVGYAFIKRIKDGGVIDSVKTI 47
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 68.2 bits (167), Expect = 2e-14
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
R +++ + + G + V+ G + I+ + G AER+G L GD + +NG
Sbjct: 10 CREVHLEKRRGEGLGVAL-VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGT 68
Query: 263 PFTGISHEEALKMCFFEGYKEGQMLKSNR-ELSMTVRSPSIPP 304
G+ ++ + + S+T+ PP
Sbjct: 69 SLVGLPLAACQ-----------AAVRETKSQTSVTLSIVHCPP 100
Score = 44.4 bits (105), Expect = 4e-06
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGV--EYNLGIFITGVDKDSVAERAGLL 412
S+ SS D R+V L G+ LG+ + I + AER+G L
Sbjct: 2 SSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGAL 56
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 68.6 bits (168), Expect = 2e-14
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVN 260
V + + + G G V G + +G+++ ++EGS+A R G L+ D IL +N
Sbjct: 21 VEVFELLK--PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN 78
Query: 261 GIPFT-GISHEEALKMCFFEGYKEGQMLKSNRE-LSMTVRSPSIP 303
G I+H++A+ +L+ ++ + + + S+P
Sbjct: 79 GQALDQTITHQQAI-----------SILQKAKDTVQLVIARGSLP 112
Score = 46.2 bits (110), Expect = 1e-06
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 351 PPPPPRWNYSARSSKD--TVRKVELNIEPGQSLGLMIRGGVEYN---LGIFITGVDKDSV 405
P ++ ++ V EL P LG + G N LGIF+ + + SV
Sbjct: 2 MPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSV 61
Query: 406 AERAGLL 412
A R G L
Sbjct: 62 AHRDGRL 68
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 67.8 bits (166), Expect = 2e-14
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 181 GSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVE 240
G HHH VR I + + GIC+K ++R+
Sbjct: 2 GHHHHHHSGH------------MVRLIQFEKVTEE--PMGICLKLNEKQS---CTVARIL 44
Query: 241 EGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
G + R G L GD IL++NG T S ++ K
Sbjct: 45 HGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKA 80
Score = 43.5 bits (103), Expect = 7e-06
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S VR ++ + +G+ ++ + + + + R G L
Sbjct: 8 HSGHMVRLIQFEKVTEEPMGICLKLNEKQ--SCTVARILHGGMIHRQGSL 55
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 68.6 bits (168), Expect = 3e-14
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVN 260
+ I++ R + G G V + V +++ V+ GS+A+R L+ D IL +N
Sbjct: 26 IEYIDIER--PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN 83
Query: 261 GIPFT-GISHEEALKMCFFEGYKEGQMLKSNRE-LSMTVRSPSIPPQAPRNHPLP 313
P ISH++A+ +L+ L + V + ++ + P
Sbjct: 84 HTPLDQNISHQQAI-----------ALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
Score = 41.7 bits (98), Expect = 6e-05
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYN---LGIFITGVDKDS 404
+ + +++ LG + N + IF+ V S
Sbjct: 6 SGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGS 65
Query: 405 VAERAGLL 412
VA+R L
Sbjct: 66 VADRDQRL 73
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 67.7 bits (166), Expect = 3e-14
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMC 276
+G +KGG + + +S++E+G A + +R GD ++ +NG P G S +EAL +
Sbjct: 22 PWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALIL- 78
Query: 277 FFEGYKEGQMLKSNRELSMTVRSPSIPPQA 306
+ S R L + VR + P +
Sbjct: 79 ---------IKGSFRILKLIVRRRNSGPSS 99
Score = 50.0 bits (120), Expect = 4e-08
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
S+ SS + + V + ++ G G ++GG+E+ + ++ ++ A + +
Sbjct: 2 SSGSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKM 54
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 67.8 bits (166), Expect = 3e-14
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 197 PDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV----GVYISRVEEGSIAERAG-LR 251
D + ++ + R +D + GI + G + G+Y+ + GS A G +
Sbjct: 6 SDASGFSLYSVELFREKDTS-SLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIE 64
Query: 252 PGDSILQVNGIPFTGISHEEALKM 275
P D IL+V+ + G++ + +++
Sbjct: 65 PNDKILRVDDVNVQGMAQSDVVEV 88
Score = 39.3 bits (92), Expect = 3e-04
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 360 SARSSKDTVRKVELNIEPG-QSLGLMIRGGVEYN-----LGIFITGVDKDSVAERAGLL 412
+ +S ++ VEL E SLG+ I G + + GI++ + S A G +
Sbjct: 5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRI 63
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 67.3 bits (165), Expect = 3e-14
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 200 DQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQ 258
+ L +++ + A G+ + G I+ + +G E L+ GD I +
Sbjct: 5 NSLEKFNVDLMK--KAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITK 58
Query: 259 VNGIPFTGISHEEALKMCFFEGYKEGQMLK-SNRELSMTVRSPSIPPQAP 307
NG G+ + + + K +N ++SM V P P A
Sbjct: 59 FNGDALEGLPFQVSY-----------ALFKGANGKVSMEVTRP--KPAAA 95
Score = 38.4 bits (90), Expect = 4e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
V+L + G+ LGL + +G I + + E L
Sbjct: 9 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKL 50
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 68.3 bits (167), Expect = 3e-14
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 181 GSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG---VGVYIS 237
GS P L+ +QL + I +N S + G G+ +KG + +G++I
Sbjct: 4 GSSGLKGEPDCYALSLESSEQLTL-EIPLNDSG--SAGLGVSLKGNKSRETGTDLGIFIK 60
Query: 238 RVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
+ G A + G LR D ++ VNG G S+ EA++
Sbjct: 61 SIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMET 99
Score = 43.6 bits (103), Expect = 1e-05
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 350 PPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVE----YNLGIFITGVDKDSV 405
P + S SS+ ++ LN LG+ ++G +LGIFI +
Sbjct: 8 LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67
Query: 406 AERAGLL 412
A + G L
Sbjct: 68 AFKDGRL 74
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 67.4 bits (165), Expect = 3e-14
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 216 NHGFGICVKGGANNPG-----VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
G G + GG + G+++SR+ EG A RAG L+ GD +L +NG+ T H
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 270 EEALKM 275
+ A+ +
Sbjct: 77 DHAVSL 82
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGV------EYNLGIFITGVDKDSVAERAGLL 412
SS + R V + LG I GG + GIF++ + + A RAG L
Sbjct: 2 SSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTL 57
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 67.5 bits (165), Expect = 3e-14
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 195 TPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNP-GVGVYISRVEEGSIAERAG-LRP 252
+ +D+ P + + G G+ + GG N G VYI V G + G L+P
Sbjct: 6 SGSPLDRDPAFRVITVTKET---GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKP 62
Query: 253 GDSILQVNGIPFTGISHEEALKM 275
GD ++ +N G+S EEA +
Sbjct: 63 GDQLVSINKESMIGVSFEEAKSI 85
Score = 32.8 bits (75), Expect = 0.057
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 364 SKDTVRKVELNIEPGQSLGLMIRGGVEYNLG--IFITGVDKDSVAERAGLL 412
+D +V + LGL I GG+ N G ++I V + G L
Sbjct: 11 DRDPAFRVIT-VTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRL 60
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 67.0 bits (164), Expect = 5e-14
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVN 260
V T+ + R G G+ + G + G+YI + GS A G L GD IL+VN
Sbjct: 9 VFTVELERGPS---GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 261 GIPFTGISHEEALKMCFFEGYKEGQMLKS-NRELSMTVRSPSIPPQAPRNHPLPP 314
G G+ + A+ +++ +++ V + + P
Sbjct: 66 GSSLLGLGYLRAV-----------DLIRHGGKKMRFLVAKS--DVETAKKIHSGP 107
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEY---NLGIFITGVDKDSVAERAGLL 412
V VEL P LG+ + G+ G++I + S A G L
Sbjct: 9 VFTVELERGPS-GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL 55
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 66.2 bits (162), Expect = 7e-14
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
R + ++ D GI +K N ++R+ G + R G L GD I ++NGI
Sbjct: 2 SRLVQFQKNTDE--PMGITLKMNELN---HCIVARIMHGGMIHRQGTLHVGDEIREINGI 56
Query: 263 PFTGISHEEALKM 275
+ E+ KM
Sbjct: 57 SVANQTVEQLQKM 69
Score = 38.9 bits (91), Expect = 3e-04
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
R V+ + +G+ ++ + + + R G L
Sbjct: 2 SRLVQFQKNTDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTL 44
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 66.6 bits (163), Expect = 7e-14
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 196 PPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGD 254
P + V + + G G + GG + GV + + G +A+R G L+ GD
Sbjct: 8 PETVCWGHVEEVELIND---GSGLGFGIVGGKTS---GVVVRTIVPGGLADRDGRLQTGD 61
Query: 255 SILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKS-NRELSMTVRSPSIPPQAPRNHP 311
IL++ G G++ E+ Q+L++ + M V + + P
Sbjct: 62 HILKIGGTNVQGMTSEQVA-----------QVLRNCGNSVRMLVARDPAGDISVTSGP 108
Score = 32.3 bits (74), Expect = 0.089
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAE 407
P W + V +VEL + LG I GG G+ + + +A+
Sbjct: 4 GSSGPETVCWGH--------VEEVELINDGS-GLGFGIVGGKTS--GVVVRTIVPGGLAD 52
Query: 408 RAGLL 412
R G L
Sbjct: 53 RDGRL 57
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 67.1 bits (164), Expect = 8e-14
Identities = 23/129 (17%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 182 SEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPG--VGVYISRV 239
++ ++ + V T+ + + + G G ++GG + + I+R+
Sbjct: 8 TDSAASASAASDVSVESTAEATVCTVTLEKM---SAGLGFSLEGGKGSLHGDKPLTINRI 64
Query: 240 EEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKS--NRELSMT 296
+G+ +E++ ++PGD ILQ+ G G++ EA ++K+ + +++
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAW-----------NIIKALPDGPVTIV 113
Query: 297 VRSPSIPPQ 305
+R S+ +
Sbjct: 114 IRRKSLQSK 122
Score = 33.2 bits (76), Expect = 0.049
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 12/83 (14%)
Query: 333 PCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY- 391
+ D A S TV V L LG + GG
Sbjct: 3 DLNSSTDSAASASAASDVSVESTAEA--------TVCTVTLEKMSA-GLGFSLEGGKGSL 53
Query: 392 --NLGIFITGVDKDSVAERAGLL 412
+ + I + K + +E++ +
Sbjct: 54 HGDKPLTINRIFKGAASEQSETV 76
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 65.8 bits (161), Expect = 8e-14
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 214 DANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
AN +G+ + G +++ + +A + G L GD IL++NG +S +A
Sbjct: 10 RANEEYGLRL-------GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Query: 273 LKM 275
K+
Sbjct: 63 RKL 65
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 370 KVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
V L + + +R G IF+ + + +A + G L
Sbjct: 3 GVLLM-KSRANEEYGLRLGS----QIFVKEMTRTGLATKDGNL 40
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 65.4 bits (160), Expect = 1e-13
Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 206 TINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPF 264
+ + +S+ N +G+ + +++ + + S+A R G ++ GD +L++NG
Sbjct: 3 KVTLVKSRK-NEEYGLRL-------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVT 54
Query: 265 TGISHEEALKMCFFEGYKEGQMLKSNRELSMTVR 298
+S +A + + +S +L M V+
Sbjct: 55 ENMSLTDAKTL----------IERSKGKLKMVVQ 78
Score = 29.5 bits (67), Expect = 0.44
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 370 KVELN-IEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
KV L + GL + IF+ + +DS+A R G +
Sbjct: 3 KVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNI 40
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 66.3 bits (162), Expect = 1e-13
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 216 NHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
N GFG + GG + P + + V A + G + GD I+ +N + G +H + +K
Sbjct: 29 NMGFGFTIIGG-DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87
Query: 275 MCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPP 315
+ F+ GQ + + + P P + P
Sbjct: 88 L--FQSVPIGQSVN------LVLCRGYPLPFDPEDPANSGP 120
Score = 37.0 bits (86), Expect = 0.002
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 361 ARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
A K T L G I GG E + + + V D A + G +
Sbjct: 13 ASQLKGTFLSTTLKKSNM-GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKM 63
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 65.1 bits (159), Expect = 2e-13
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPG-------VGVYISRVEEGSIAERAGLRPGDSIL 257
I + +D GF I GG G G++++RV+ A + L+PGD I+
Sbjct: 3 MEIRVRVEKDPELGFSI--SGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKII 59
Query: 258 QVNGIPFTGISHEEALKM 275
Q NG F I H +A+ +
Sbjct: 60 QANGYSFINIEHGQAVSL 77
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEY--------NLGIFITGVDKDSVAERA 409
++ + +E LG I GGV + GIF+T V + A +
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL 51
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 65.8 bits (161), Expect = 2e-13
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 216 NHGFGICVKGGANNPG--VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEA 272
G G + G +Y+ + A + G L+ GD +++VNG+ G S EE
Sbjct: 21 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80
Query: 273 LKM 275
+ +
Sbjct: 81 VSL 83
Score = 31.9 bits (73), Expect = 0.13
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 360 SARSSKDTVRKVELNIEPG-QSLGLMIRGGVEY---NLGIFITGVDKDSVAERAGLL 412
S ++K +++ + ++ G + LG I + I++ + A + G L
Sbjct: 2 SVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRL 58
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 65.5 bits (160), Expect = 2e-13
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 200 DQLPVRTINMNRSQDANHGFGICVKGGANNPG-------VGVYISRVEEGSIAERAGLRP 252
+L + I + +D GF I GG G G++++RV+ A + L+P
Sbjct: 6 HELAKQEIRVRVEKDPELGFSI--SGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQP 62
Query: 253 GDSILQVNGIPFTGISHEEALKM 275
GD I+Q NG F I H +A+ +
Sbjct: 63 GDKIIQANGYSFINIEHGQAVSL 85
Score = 37.8 bits (88), Expect = 8e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 369 RKVELNIEPGQSLGLMIRGGVEY--------NLGIFITGVDKDSVAERA 409
+++ + +E LG I GGV + GIF+T V + A +
Sbjct: 11 QEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL 59
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 71.1 bits (173), Expect = 2e-13
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
++ + + G+ + GG + VG++++ V E S A + GL GD IL+VN +
Sbjct: 2 MKLVKFRKGD----SVGLRLAGGND---VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 54
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQA 323
FT I EEA+ +L + +T+ + R ++ +R
Sbjct: 55 FTNIIREEAVLF----------LLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTH 104
Query: 324 YSW 326
+ +
Sbjct: 105 FEY 107
Score = 43.0 bits (100), Expect = 2e-04
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 367 TVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+++ V+ G S+GL + GG + +GIF+ GV +DS A + GL
Sbjct: 1 SMKLVK--FRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEE 43
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 65.6 bits (160), Expect = 3e-13
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 216 NHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALK 274
+ GFG V GG + P + I + A G + GD I+ VN G +H + +K
Sbjct: 28 SRGFGFTVVGG-DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 86
Query: 275 MCFFEGYKEGQMLKSNRELSMTV-RSPSIP--PQAPRNHPLPPPP 316
+ F+ G + + + R +P P P +
Sbjct: 87 I--FQSIPIGASVD------LELCRGYPLPFDPDDPNTSLVTSVA 123
Score = 36.3 bits (84), Expect = 0.005
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
+ K +L + + G + GG E + + I + D A G +
Sbjct: 11 NPSELKGKFIHTKL-RKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKM 62
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 65.1 bits (159), Expect = 3e-13
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 216 NHGFGICVKGGANNPGV-----GVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISH 269
+ G GI + G + G+++ V EG A R G ++ D +++V+G G++
Sbjct: 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73
Query: 270 EEALKM 275
A +
Sbjct: 74 SFAASV 79
Score = 35.0 bits (81), Expect = 0.010
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 368 VRKVELNIEPGQSLGLMIRGGV------EYNLGIFITGVDKDSVAERAGLL 412
+ VEL + + LG+ I G LGIF+ V + A R G +
Sbjct: 5 LFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRI 54
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 65.3 bits (159), Expect = 3e-13
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 190 RHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG 249
RH + PP+ +D +G + P +++ +V+EG A AG
Sbjct: 26 RHFIVYPPESAIQFS-------YKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG 78
Query: 250 LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPP 304
L GD I++VNG G ++ + + + + S+ L ++V P
Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIAL----------IQNSDTTLELSVMPKDSGP 123
Score = 32.2 bits (73), Expect = 0.12
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
++ + E + G R +E IF+ V + A AGL
Sbjct: 31 YPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCT 81
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 64.7 bits (158), Expect = 3e-13
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 216 NHGFGICVKGGANNPG-------VGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGI 267
+ G + GG + G+++S++ + A + G L+ D I++VNG +
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 268 SHEEALKMCFFEGYKEGQMLKSNR-ELSMTVRSPSIPP 304
+H++A+ + K+ + + + V + P
Sbjct: 78 THDQAV-----------EAFKTAKEPIVVQVLRRTSGP 104
Score = 36.2 bits (84), Expect = 0.003
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 368 VRKVELNIEPGQSLGLMIRGG--------VEYNLGIFITGVDKDSVAERAGLL 412
+ L+ + G SLG I GG + GIF++ + A + G L
Sbjct: 9 SLTLVLHRDSG-SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGL 60
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 68.6 bits (167), Expect = 4e-13
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 7/187 (3%)
Query: 188 HPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAER 247
P P+ L R + + + G GI +KGG N + + IS++ +G A++
Sbjct: 62 EPGAAPPQLPEALLLQRRRVTVRK--ADAGGLGISIKGGRENK-MPILISKIFKGLAADQ 118
Query: 248 AG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQA 306
L GD+IL VNG + +H+EA++ G + +K +E+S ++ +
Sbjct: 119 TEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSV 178
Query: 307 PRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKD 366
+ P P L A P P Y + D
Sbjct: 179 GWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMA---YVSRRCTPTDPEPRYLEICAAD 235
Query: 367 TVRKVEL 373
V L
Sbjct: 236 GQDAVFL 242
Score = 50.9 bits (121), Expect = 3e-07
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 328 DRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRG 387
D + P P + P PP P + R+V + LG+ I+G
Sbjct: 45 DGEPGPEPEPAQLNGAAEPGAAPPQLPE-------ALLLQRRRVTVRKADAGGLGISIKG 97
Query: 388 GVEYNLGIFITGVDKDSVAERAGLL 412
G E + I I+ + K A++ L
Sbjct: 98 GRENKMPILISKIFKGLAADQTEAL 122
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 64.4 bits (157), Expect = 5e-13
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 175 GKKSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGV 234
G + G + V+ + + +++D G V+ V
Sbjct: 1 GSSGSSGPITDERVYESIGHYGGE----TVKIVRIEKARDI--PLGATVRNE----MDSV 50
Query: 235 YISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNR-E 292
ISR+ +G AE++G L GD +L++NGI G E +L
Sbjct: 51 IISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVF-----------DLLSDMHGT 99
Query: 293 LSMTVRSPSIPPQA 306
L+ + S P
Sbjct: 100 LTFVLIPSSGPSSG 113
Score = 46.3 bits (110), Expect = 1e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAE 407
P + +TV+ V + LG +R ++ + I+ + K AE
Sbjct: 6 SGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD---SVIISRIVKGGAAE 62
Query: 408 RAGLL 412
++GLL
Sbjct: 63 KSGLL 67
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 63.9 bits (156), Expect = 6e-13
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV-----GVYISRVEEGSIAERAG-LRPGDSIL 257
+ + + + G GI + G G+++ V EG A+R G ++ D I+
Sbjct: 10 LFPVELEKD---EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66
Query: 258 QVNGIPFTGISHEEALKM 275
+V+GI G++ A +
Sbjct: 67 EVDGISLVGVTQNFAATV 84
Score = 35.0 bits (81), Expect = 0.008
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGV------EYNLGIFITGVDKDSVAERAGLL 412
S+ SS + VEL + LG+ I G LGIF+ V + A+R G +
Sbjct: 2 SSGSSGLELFPVELEKDED-GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRI 59
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 63.6 bits (155), Expect = 7e-13
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIP 263
+ + +S N +G+ + +++ + + S+A R G ++ GD +L++NG
Sbjct: 4 TKVTLVKSAK-NEEYGLRL-------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHP 311
+S +A + + +S +L M V+ N P
Sbjct: 56 TENMSLTDAKTL----------IERSKGKLKMVVQRD--ERATLLNVP 91
Score = 31.2 bits (71), Expect = 0.13
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 369 RKVELN-IEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
KV L + GL + IF+ + +DS+A R G +
Sbjct: 4 TKVTLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNI 42
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 63.5 bits (155), Expect = 9e-13
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV-------GVYISRVEEGSIAERAG-LRPGDS 255
+ + + ++ ++ GI V + GV G+Y+ V AE G + GD
Sbjct: 10 IFEVELAKN---DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 256 ILQVNGIPFTGISHEEALKM 275
+L VNG+ G +H++A++
Sbjct: 67 VLAVNGVSLEGATHKQAVET 86
Score = 31.9 bits (73), Expect = 0.12
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 350 PPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEY--------NLGIFITGVD 401
PP P + +VEL SLG+ + + + GI++ V
Sbjct: 3 SPPKPGD-----------IFEVELAKNDN-SLGISVTVLFDKGGVNTSVRHGGIYVKAVI 50
Query: 402 KDSVAERAGLL 412
AE G +
Sbjct: 51 PQGAAESDGRI 61
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 62.8 bits (153), Expect = 1e-12
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 205 RTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPF 264
T+ +++ +G + + + V G A L PGD ILQ+N P
Sbjct: 10 HTVKIDKDTL-LQDYGFHISESL-----PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPA 62
Query: 265 TGISHEEALKMCFFEGYKEGQMLKS-NRELSMTV-RSPSIPPQA 306
+S E A+ +L+ LS+TV R S P +
Sbjct: 63 EDLSWERAV-----------DILREAEDSLSITVVRCTSSGPSS 95
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 62.7 bits (153), Expect = 1e-12
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
+ T+++ + GFG + G G + ++ + GL+ GD I++VN
Sbjct: 4 LITVHIVKG---PMGFGFTIADS--PGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKN 56
Query: 264 FTGISHEEALKMCFFEGYKEGQMLKS---NRELSMTVR 298
++H + + ML E+++ V+
Sbjct: 57 VQALTHNQVV-----------DMLVESPKGSEVTLLVQ 83
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 64.9 bits (158), Expect = 2e-12
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 27/146 (18%)
Query: 175 GKKSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQ--------DANHGFGICVKGG 226
G GS + T L V + + A G+ +
Sbjct: 75 GTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN 134
Query: 227 ANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQ 285
G I+ + +G E L+ GD I + NG G+ +
Sbjct: 135 EI----GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY-----------A 179
Query: 286 MLK-SNRELSMTV--RSPSIPPQAPR 308
+ K +N ++SM V P++ +AP+
Sbjct: 180 LFKGANGKVSMEVTRPKPTLRTEAPK 205
Score = 56.4 bits (136), Expect = 2e-09
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 189 PRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNP-GVGVYISRVEEGSIAER 247
P + P + P + I + + G+ V GG NN G I+ V
Sbjct: 2 PGSKPQEPATAEIKPNKKILIELKVEKK-PMGVIVCGGKNNHVTTGCVITHVYPEGQVAA 60
Query: 248 AG-LRPGDSILQVNGIPFTGISHE 270
L+ D I +NG P S
Sbjct: 61 DKRLKIFDHICDINGTPIHVGSMT 84
Score = 40.3 bits (94), Expect = 5e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 346 PMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNL--GIFITGVDKD 403
P P P + +K + +EL +E +G+++ GG ++ G IT V +
Sbjct: 2 PGSKPQEPAT---AEIKPNKKIL--IELKVEKK-PMGVIVCGGKNNHVTTGCVITHVYPE 55
Query: 404 SVAERAGLL 412
L
Sbjct: 56 GQVAADKRL 64
Score = 35.6 bits (82), Expect = 0.015
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 350 PPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERA 409
+ A + V+L + G+ LGL + +G I + + E
Sbjct: 96 YEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEID 152
Query: 410 GLL 412
L
Sbjct: 153 SKL 155
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 62.4 bits (152), Expect = 2e-12
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGV---GVYISRVEEGSIAERAG-LRPGDSILQV 259
V+ + + + G G + + + I + +AER+G L PGD ++ V
Sbjct: 16 VKIVELVKD---CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 260 NGIPFTGISHEEALKM 275
N S EA+++
Sbjct: 73 NEYCLDNTSLAEAVEI 88
Score = 29.7 bits (67), Expect = 0.59
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVE----YNLGIFITGVDKDSVAERAGLL 412
V+ VEL + LG I + I I + D VAER+G L
Sbjct: 16 VKIVELVKDCK-GLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGL 63
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 62.3 bits (151), Expect = 1e-11
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 21/159 (13%)
Query: 123 YRTQPSSTEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGS 182
Y + E S + + S + S + S E + SAE
Sbjct: 12 YEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYE 71
Query: 183 EEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGV-----GVYIS 237
+++L + + + + + G GI + G + G+++
Sbjct: 72 ------------LEKRVERLELFPVELEKD---SEGLGISIIGMGAGADMGLEKLGIFVK 116
Query: 238 RVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
V EG A R G ++ D +++V+G G++ A +
Sbjct: 117 TVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASV 155
Score = 38.0 bits (88), Expect = 0.002
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 20/127 (15%)
Query: 305 QAPRNHPLPPPPAWTMRQAYSW-----IDRQGRPCSPPL--------DYARSVIPMPPPP 351
+ P P S R+ + P+ + P
Sbjct: 5 EEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPM 64
Query: 352 PPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGV------EYNLGIFITGVDKDSV 405
+ R + + VEL + LG+ I G LGIF+ V +
Sbjct: 65 AASAEYELEKRVERLELFPVELEKDSE-GLGISIIGMGAGADMGLEKLGIFVKTVTEGGA 123
Query: 406 AERAGLL 412
A R G +
Sbjct: 124 AHRDGRI 130
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.9 bits (145), Expect = 2e-11
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 179 AEGSEEHHHHPRHRRLTPPDIDQLP-VRTINMNRSQDANHGFGICVKGGANNPGVGVYIS 237
+ GS + + L V + N G G+ V G + IS
Sbjct: 2 SSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVG---NLGLGLVVIQN----GPYLQIS 54
Query: 238 RVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMT 296
+ A G L+PGD ++ V G + E LK+ + G +L+ +
Sbjct: 55 HLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL--LQNITIGTVLQ------IK 106
Query: 297 VRSPSIPPQAPRNHPLPP 314
+ P
Sbjct: 107 AYRGFLEIPQEWQDSGPS 124
Score = 27.9 bits (62), Expect = 3.3
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 348 PPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAE 407
++ SS + V + +L + LGL++ + I+ + A
Sbjct: 8 SKNEKEQLSKAKASVSSLNKVIQTKLTVGN-LGLGLVVIQN---GPYLQISHLINKGAAA 63
Query: 408 RAGLL 412
G+L
Sbjct: 64 SDGIL 68
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 61.9 bits (149), Expect = 1e-10
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 214 DANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEAL 273
D + G V+ G I + G IAER G+R G I+++NG +HE+ +
Sbjct: 305 DLKYQLGFSVQNG--------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIV 356
Query: 274 KM 275
+
Sbjct: 357 QA 358
Score = 61.5 bits (148), Expect = 2e-10
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 2/167 (1%)
Query: 110 KPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKML 169
+ R + T + + + S + +++ ++ L+
Sbjct: 111 RRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRAN 170
Query: 170 TSGGGGKKSAEGSEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANN 229
E S+ + + + + + + + + G + V+ G +
Sbjct: 171 GINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVV-VESGWGS 229
Query: 230 PGVGVYISRVEEGSIAERAG-LRPGDSILQVNGIPFTGISHEEALKM 275
V ++ + G A R+G L GD I+ +NG G+ +
Sbjct: 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGI 276
Score = 33.4 bits (75), Expect = 0.15
Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 277 FFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPP--------------AWTMRQ 322
+ +L + R + + I A ++ Q
Sbjct: 98 YIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQ 157
Query: 323 AYS--WIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQS 380
A+S + + P D ++ + S+ + ++++L G+
Sbjct: 158 AFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEI 217
Query: 381 LGLMIRGGVEYNL--GIFITGVDKDSVAERAGLL 412
LG+++ ++ + + + A R+G L
Sbjct: 218 LGVVVVESGWGSILPTVILANMMNGGPAARSGKL 251
Score = 30.3 bits (67), Expect = 1.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 360 SARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLLV 413
+ S + + LG ++ G I + + +AER G+ V
Sbjct: 289 NIVSCPPVTTVLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAERGGVRV 335
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 59.2 bits (142), Expect = 2e-10
Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 26/204 (12%)
Query: 216 NHGFGICVKGGANNPG-------VGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
+ G + GG G G++++RV+ A + L+PGD I+Q NG F I
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 59
Query: 269 HEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWID 328
H +A+ + + + + + + + +
Sbjct: 60 HGQAVSL----------LKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTN 109
Query: 329 RQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRG- 387
+ +P S++ + V+ P S I G
Sbjct: 110 LEVVAATPT-----SLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGL 164
Query: 388 --GVEYNLGIFITGVDKDSVAERA 409
GV+Y + ++ S
Sbjct: 165 KPGVDYTITVYAYSDYYGSHHYSP 188
Score = 27.2 bits (59), Expect = 8.8
Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 1/92 (1%)
Query: 182 SEEHHHHPRHRRLTPPDIDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEE 241
+ + P + + + G +
Sbjct: 96 KDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYS 155
Query: 242 GSIAERAGLRPG-DSILQVNGIPFTGISHEEA 272
S A +GL+PG D + V SH +
Sbjct: 156 SSTATISGLKPGVDYTITVYAYSDYYGSHHYS 187
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 54.7 bits (132), Expect = 8e-10
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
+ T+ + + GFG + G + ++ + I GL GD I+++N
Sbjct: 11 LMTLTIVKGAQ---GFGFTIADSPT----GQRVKQILD--IQGCPGLCEGDLIVEINQQN 61
Query: 264 FTGISHEEALKM 275
+SH E + +
Sbjct: 62 VQNLSHTEVVDI 73
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 54.0 bits (130), Expect = 1e-09
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAG-LRPGDSILQVNGI 262
R + + ++ A G+ + G + I+R+ G + + G L GD I +VNG
Sbjct: 7 GRMVGIRKT--AGEHLGVTFRVE----GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
Query: 263 PFTGISHEEALKM 275
P G ++
Sbjct: 61 PV-GSDPRALQEL 72
Score = 40.9 bits (96), Expect = 5e-05
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 363 SSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGLL 412
SS + R V + G+ LG+ R + I + + + GLL
Sbjct: 2 SSGSSGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLL 48
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 51.8 bits (124), Expect = 1e-08
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
+ TI + + GFG + V + + GL+ GD I ++
Sbjct: 13 LVTIPLIKGPK---GFGFAIADSPTGQKVKMILDS------QWCQGLQKGDIIKEIYHQN 63
Query: 264 FTGISHEEALKM 275
++H + +++
Sbjct: 64 VQNLTHLQVVEV 75
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 49.6 bits (119), Expect = 7e-08
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
GV I +V GS A RAGLRPGD IL +
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQM 66
Score = 33.8 bits (78), Expect = 0.023
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
V + L+ L L + G+ I V S A RAGL
Sbjct: 10 VMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGL 53
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 48.8 bits (117), Expect = 1e-07
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G+Y+ V S ++R G++ GD I++VNG P
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRP 66
Score = 32.3 bits (74), Expect = 0.097
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
+R + L E + GI++ V +S ++R G+
Sbjct: 10 IRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGI 53
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 52.1 bits (125), Expect = 2e-07
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 218 GFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALK 274
+ + K N+ IS V GS AE AGL+ G I+ +NG T E L+
Sbjct: 77 DYTL-YKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQ 132
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 48.7 bits (115), Expect = 2e-07
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 204 VRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAE--RAGLRPGDSILQVNG 261
V I+M + + GF + V+ ++N V + V I+ R + PGD IL++NG
Sbjct: 16 VTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEING 75
Query: 262 IPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNHP 311
P + EE + ++++ L + + +P + ++ P
Sbjct: 76 TPVRTLRVEEVEDA----------IKQTSQTLQLLIEHDPVPQRLDQSGP 115
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 51.1 bits (123), Expect = 3e-07
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 215 ANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
A+H + V+ + +G I V G A AG+ G + +V+ P
Sbjct: 226 ASHAS-LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP 273
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 49.2 bits (118), Expect = 1e-06
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
GV I +V GS A RAGLRPGD IL +
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQM 287
Score = 34.1 bits (79), Expect = 0.085
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
V + L+ L L + G+ I V S A RAGL
Sbjct: 231 VMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGL 274
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 45.7 bits (108), Expect = 1e-06
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 227 ANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
++ +G +S ++ + E GL+ GD + +NG+ T
Sbjct: 32 RDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT 70
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 48.8 bits (117), Expect = 2e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G YI V + AE GL+ D I+ +NG
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQS 285
Score = 34.2 bits (79), Expect = 0.081
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
+R + L + L R + G +I V D+ AE GL
Sbjct: 229 IRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGL 272
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 48.5 bits (116), Expect = 3e-06
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
GV + E S RAG+RPGD I+ N P T +
Sbjct: 387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVK 422
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 226 GANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G G +S+V S AE AGL+ GD I Q+N
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTK 313
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 48.5 bits (116), Expect = 3e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
GV ++ V+ G+ A + GL+ GD I+ N I+
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIA 419
Score = 44.6 bits (106), Expect = 4e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G ++S+V S A +AG++ GD I +NG P
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
Score = 27.7 bits (62), Expect = 9.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 372 ELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
ELN E +++ + + G F++ V +S A +AG+
Sbjct: 271 ELNSELAKAMKV------DAQRGAFVSQVLPNSSAAKAGI 304
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 48.4 bits (116), Expect = 3e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 226 GANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
+ G G+ I V +GS A +AGL+ D I+ VN I+
Sbjct: 357 QLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIA 399
Score = 45.3 bits (108), Expect = 3e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G ++S V GS + +AG++ GD I +NG P
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKP 294
Score = 27.6 bits (62), Expect = 9.5
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 388 GVEYNLGIFITGVDKDSVAERAGL 411
++ G F++ V S + +AG+
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGV 281
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 44.6 bits (106), Expect = 3e-06
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
G+Y S V E A+ + GD I+ +G +
Sbjct: 2 GIYASSVVENMPAK-GKIEVGDKIISADGKNYQ 33
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 44.0 bits (104), Expect = 4e-06
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 228 NNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQML 287
++ +G +S ++ + E GL+ GD + +NG+ T + Q +
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLF--------QSM 64
Query: 288 KSNRELSMTV 297
E+S+TV
Sbjct: 65 NEMTEMSLTV 74
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 47.6 bits (114), Expect = 5e-06
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 231 GVGVYISRVE------------EGSIAERAGLRPGDSILQVNGIPFTGISHEEALKM 275
GVG+ I+ G AE+AG R GD I+ V+G G+S + +
Sbjct: 86 GVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDL 142
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 43.1 bits (102), Expect = 9e-06
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
GVY+ V A L GD I ++G P
Sbjct: 6 GVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPIN 37
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 46.0 bits (110), Expect = 1e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G+ ++ V A AG++ D I+ V+ P
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKP 275
Score = 31.8 bits (73), Expect = 0.44
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 368 VRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVAERAGL 411
+ E+ Q G+ + GI + V D A AG+
Sbjct: 225 IGGREIAPLHAQGGGI------DQLQGIVVNEVSPDGPAANAGI 262
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 42.1 bits (99), Expect = 2e-05
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSM 295
+ V+ S A AGL+ GD I+ V+G P T L ++ + LS+
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLSL 67
Query: 296 TV 297
T+
Sbjct: 68 TL 69
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFT 265
GVY+ V++ A L GD I +++G F
Sbjct: 8 GVYVMSVKDDVPAADV-LHAGDLITEIDGNAFK 39
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 42.5 bits (100), Expect = 3e-05
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGIS 268
GV I V GS A + L PG I +NG+P + ++
Sbjct: 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLT 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 44.9 bits (107), Expect = 3e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
G ++S V GS + +AG++ GD I +NG P
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKP 294
Score = 28.4 bits (64), Expect = 5.6
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 388 GVEYNLGIFITGVDKDSVAERAGL 411
++ G F++ V S + +AG+
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGV 281
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 41.8 bits (99), Expect = 6e-05
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 233 GVYISRVEEGSIAERAGLRPGDSILQVNGIP 263
GV + V+ A L D I +V+
Sbjct: 58 GVIVRSVQSNMPAN-GHLEKYDVITKVDDKE 87
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 40.7 bits (95), Expect = 7e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 236 ISRVEEGSIAERAGLRPGDSILQVNGIP 263
+ + SIA A + PG + V+GI
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIE 33
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 44.2 bits (103), Expect = 7e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 228 NNPGVGVYISRVEEGSIAERAGLRPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQML 287
G+ + V A AGL GD I+ ++ + T S + L+ Y G +
Sbjct: 492 KASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILE-----RYIPGDTV 546
Query: 288 K 288
Sbjct: 547 T 547
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 41.6 bits (97), Expect = 2e-04
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 224 KGGANNPGVGVYISRVEEGSIAERAGLRP-GDSILQVNGIPFT 265
G ++ RV+E S RAGL P D I+ +NG
Sbjct: 8 VEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN 50
Score = 36.6 bits (84), Expect = 0.010
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 212 SQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRP-GDSILQVNGI 262
G I ++ VE S A AGLRP D I+ + +
Sbjct: 92 GGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 62/215 (28%)
Query: 251 RPGDSILQVNGIPFTGISHEEALKMCFFEGYKEGQMLKSNRELSMTVRSPSIPPQAPRNH 310
R ++ T IS + + +LK L R +P + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY---LDC--RPQDLPREVLTTN 326
Query: 311 PLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKD---T 367
P S I A S+ W+ + D T
Sbjct: 327 PR----------RLSII-------------AESIRDG------LATWDNWKHVNCDKLTT 357
Query: 368 VRKVELN-IEPGQSLGLMIRGGVEY-NLGIFITGVD----------KDSVAERAGLLVSQ 415
+ + LN +EP + + + L +F D + ++V++
Sbjct: 358 IIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 416 LTLYQFI----KEFLILSDHDKDFDTVISFSHEQT 446
L Y + KE I S + + +E
Sbjct: 411 LHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYA 444
Score = 39.8 bits (92), Expect = 0.002
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 35/143 (24%)
Query: 320 MRQAYSWI-------DRQGRPCSPPLDYARSVIPMPPPPPPPPRWNYSARSSKDTVRKVE 372
+R Y ++ RQ P Y + ++N S +R+
Sbjct: 87 LRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 373 LNIEPGQSLGL--MIRGGV-----------------EYNLGIF-ITGVDKDSVAERAGLL 412
L + P +++ + + G + + IF + + + E +L
Sbjct: 145 LELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPE--TVL 199
Query: 413 VSQLTLY-QFIKEFLILSDHDKD 434
L Q + SDH +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSN 222
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 40.3 bits (95), Expect = 9e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 233 GVYISRVEEGSIAERAGLRP-----------GDSILQVNGIP 263
GV + A +AGL+ GD I VNG
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK 293
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 38.5 bits (89), Expect = 0.005
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 68 GHYNPRASHRSKAGLYYSPPGTSYT-IVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQ 126
Y+P + S YSP SY+ P P P P T + +S
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1620
Query: 127 PSSTEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSP 162
P+S Y SPS + +S + +S S+ + SP
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Score = 37.4 bits (86), Expect = 0.010
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 70 YNPRASHRSKAGLYYSP--PGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQP 127
Y+P + S YSP P S T P P P P T + +S P
Sbjct: 1598 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSP 1656
Query: 128 SSTEYRSNSPSNN-TSSSYRNTSSH 151
+S Y SPS + TS SY TS
Sbjct: 1657 TSPAYSPTSPSYSPTSPSYSPTSPS 1681
Score = 34.3 bits (78), Expect = 0.100
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 70 YNPRASHRSKAGLYYSPPGTSYT-IVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPS 128
++P + S YSP SY+ P P P P T + +S P+
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1601
Query: 129 STEYRSNSPS-NNTSSSYRNTSSHSHGT 155
S Y SPS + TS SY TS T
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1629
Score = 34.3 bits (78), Expect = 0.12
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 1/122 (0%)
Query: 70 YNPRASHRSKAGLYYSPPGTSYTIVERP-PPPPPVPLPQPPKPRGTYLGTNGSSYRTQPS 128
Y+P + S YSP SY+ P P P P T + +S P+
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPT 1671
Query: 129 STEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHH 188
S Y SPS + +S + +S ++ + SP S K E + +
Sbjct: 1672 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Query: 189 PR 190
R
Sbjct: 1732 SR 1733
Score = 33.1 bits (75), Expect = 0.21
Identities = 21/99 (21%), Positives = 34/99 (34%)
Query: 84 YSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTSS 143
++ G + P P P + G + +S P+S Y SPS + +S
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTS 1567
Query: 144 SYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGS 182
+ +S S+ + SP TS S S
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606
Score = 32.8 bits (74), Expect = 0.27
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 68 GHYNPRASHRSKAGLYYSPPGTSYT-IVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQ 126
Y+P + S YSP SY+ P P P P T + +S
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 127 PSSTEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSP 162
P+S Y SPS + +S + +S ++ + SP
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670
Score = 31.2 bits (70), Expect = 1.0
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 72 PRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTE 131
A K L +SP S + + + +Y P+S
Sbjct: 1480 VNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPF-----GAYGEAPTSPG 1534
Query: 132 YRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGS-EEHHHHPR 190
+ +SP + +S + +S ++ + SP TS S S + P
Sbjct: 1535 FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1594
Query: 191 HRRLTP 196
+P
Sbjct: 1595 SPSYSP 1600
Score = 30.8 bits (69), Expect = 1.1
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 83 YYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTS 142
YSP +Y+ P P P P T + +S P+S Y SPS + +
Sbjct: 1548 TYSPTSPAYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1601
Query: 143 SSYRNTSSHSHGTKKGALSP 162
S + +S S+ + SP
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSP 1621
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 38.5 bits (89), Expect = 0.005
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 70 YNPRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSS 129
Y+P + S YS SY+ P P P P T + +S P+S
Sbjct: 1592 YSPTSPSYSPTSPSYSATSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Query: 130 TEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSE 183
Y SPS + +S + +S S+ + SP TS S S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 37.0 bits (85), Expect = 0.015
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 70 YNPRASHRSKAGLYYSP--PGTSYTIVERPPPPP------PVPLPQPPKPRGTYLGTNGS 121
Y+P + S YSP P S T P P P P P T + +
Sbjct: 1634 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1693
Query: 122 SYRTQPSSTEYRSNSPSNN-TSSSYRNTS 149
S P+S Y SPS + TS SY TS
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 35.4 bits (81), Expect = 0.051
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 69 HYNPRASHRSKAGLYYSPPGTSYTIVE-RPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQP 127
Y+P + S YSP SY+ P P P P T + +S P
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Query: 128 SSTEYRSNSPSNNTSSSYRNTSSHSHGTKKGALSP 162
+S Y SPS + +S + +S S+ + SP
Sbjct: 1714 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
Score = 32.4 bits (73), Expect = 0.38
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 67 MGHYNPRASHRSKAGLYYSPPGTSYTIVERPPPPPPV-----PLPQPPKPRGTYLGTNGS 121
S +SP + + P P T ++
Sbjct: 1488 RSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAM 1547
Query: 122 SYRTQPSSTEYRSNSPSNNTSSSYRNTS 149
S +S Y +SP +TS +Y +S
Sbjct: 1548 SPGYGLTSPSYSPSSPGYSTSPAYMPSS 1575
Score = 31.6 bits (71), Expect = 0.68
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 84 YSPPGTSYTIVERPP---PPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNN 140
SP TS P P P P T SS P+S Y SPS +
Sbjct: 1535 QSPGYTSPFSSAMSPGYGLTSPSYSPSSPG-YSTSPAYMPSSPSYSPTSPSYSPTSPSYS 1593
Query: 141 TSSSYRNTSSHSHGTKKGALSP 162
+S + +S S+ + SP
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSP 1615
Score = 29.7 bits (66), Expect = 2.6
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 69 HYNPRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPS 128
Y+P + S YSP SY+ P P P P T + +S P+
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1742
Query: 129 STEYRSNSPS 138
S Y SPS
Sbjct: 1743 SPSYSPTSPS 1752
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 33.1 bits (75), Expect = 0.14
Identities = 12/71 (16%), Positives = 15/71 (21%)
Query: 300 PSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRWNY 359
P P PP Q + G P + P PPP
Sbjct: 18 PVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKT 77
Query: 360 SARSSKDTVRK 370
+K
Sbjct: 78 QKPKKPTQKKK 88
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 31.3 bits (70), Expect = 0.15
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 211 RSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGLRPGDSILQVNG-----IPFT 265
Q+ ++GF I K A V + V+ GS+AE AGL+ G I +N PF+
Sbjct: 24 LPQEEDYGFDIEEKNKA------VVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFS 77
Query: 266 GISHEEALKMCF 277
+ E L F
Sbjct: 78 EV--ESILNQSF 87
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 32.2 bits (73), Expect = 0.17
Identities = 15/85 (17%), Positives = 19/85 (22%), Gaps = 12/85 (14%)
Query: 294 SMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPP 353
S PR +P P DY +S P P P
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGG------------YAEPAGRDYDYGQSGAPDYGQPAP 50
Query: 354 PPRWNYSARSSKDTVRKVELNIEPG 378
Y V L ++ G
Sbjct: 51 GGYSGYGQGGYGSAGTSVTLQLDDG 75
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 33.3 bits (75), Expect = 0.19
Identities = 10/86 (11%), Positives = 22/86 (25%)
Query: 67 MGHYNPRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQ 126
M H+ R +++ + PP P + G S + Q
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 127 PSSTEYRSNSPSNNTSSSYRNTSSHS 152
+ + +++ N
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLH 86
Score = 29.8 bits (66), Expect = 2.7
Identities = 6/57 (10%), Positives = 14/57 (24%)
Query: 299 SPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPP 355
+ P +PP +Y + + P + + + P
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 365 KDTVRKVE--LNI-EPGQSLGLMIRGGVE 390
K ++K++ L + + L I+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 31.5 bits (71), Expect = 0.55
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 5/117 (4%)
Query: 72 PRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTE 131
+ S + G+S P + G+ RT
Sbjct: 370 SKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRATDASPGAFRRTSGPQKS 429
Query: 132 YRSNSPSNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHH 188
NS SSS R++S+ + S + ++ L G + + EHHHH
Sbjct: 430 SPVNSAEPKHSSSARHSSNVKNYE-----SALKGIEGLNFDGDERVQYAAALEHHHH 481
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 31.4 bits (70), Expect = 0.76
Identities = 10/66 (15%), Positives = 15/66 (22%)
Query: 97 PPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTSSSYRNTSSHSHGTK 156
PPPP P ++ + +S SS N +
Sbjct: 33 PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAA 92
Query: 157 KGALSP 162
S
Sbjct: 93 AATFSE 98
Score = 30.2 bits (67), Expect = 1.8
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 95 ERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTSSSYRNTSSHSHG 154
+PPPPPP P +S +S +PS +S SS S+
Sbjct: 29 PQPPPPPPSAASPGATPGSAAASAERASTAAPVAS----PAAPSPGSSGGGGFFSSLSNA 84
Query: 155 TKKGALSPEQVLKMLTSGGGGKKSAEGS 182
K+ + GG G G+
Sbjct: 85 VKQTTAAAAATFSEQVGGGSGGAGRGGA 112
Score = 28.3 bits (62), Expect = 5.6
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 3/88 (3%)
Query: 80 AGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSN 139
L P P P + + ++ S +S SN
Sbjct: 24 TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83
Query: 140 ---NTSSSYRNTSSHSHGTKKGALSPEQ 164
T+++ T S G G
Sbjct: 84 AVKQTTAAAAATFSEQVGGGSGGAGRGG 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.85
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 194 LTPPDIDQLPVRTINMNRSQ--DANH--GFGICVKGGANNPGVGVYISRVEEGSIAERAG 249
++ +D + + + A H FG GGA G+GV R ++G+ G
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFG---PGGA--SGLGVLTHRNKDGT-----G 524
Query: 250 LR 251
+R
Sbjct: 525 VR 526
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 30.9 bits (70), Expect = 0.98
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 96 RPPPPPPVPLPQPPKPRGTYLGTNG 120
R P + GT L T
Sbjct: 235 RASLPAHGTASPWWQADGTVLVTGA 259
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L*
1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L*
1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L*
1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Length = 165
Score = 29.8 bits (67), Expect = 1.3
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 21/112 (18%)
Query: 146 RNTSSHSHGTKKGALSPEQVLKMLTSGGG--GKKSAEGSEEHHHHPRHRRL-----TPPD 198
R + +H G+ K G G G + G + H H L P
Sbjct: 9 RGSRTHGGGSHKN-----------RRGAGHRGGRGDAGRD-KHEFHNHEPLGKSGFKRPQ 56
Query: 199 IDQLPVRTINMNRSQDANHGFGICVKGGANNPGVGVYISRVEEGSIAERAGL 250
Q TI++ + A G + + A+ A
Sbjct: 57 KVQEEAATIDVREIDENVTLLAA--DDVAEVEDGGFRVDVRDVVEEADDADY 106
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras;
2-hydroxychromene-2-carboxylate ISO structural genomics,
PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides
2}
Length = 202
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 12/55 (21%)
Query: 309 NHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSV-IPMPPPPPPPPRWNYSAR 362
L P ++ Y+ D AR + PP P + R
Sbjct: 52 ARGLSSTPL---KRDYAQRDWA--------RIARQRGLTFRPPADHPHVALAATR 95
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 29.8 bits (68), Expect = 2.0
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 305 QAPRNHPLPPPPAWTMRQA 323
+A P W MRQA
Sbjct: 21 RAAWGEETDYTPVWCMRQA 39
>3mxa_A SCV3V2(G19S); protein-DNA complex, hydrolase-DNA complex; HET: DNA
1PE; 2.30A {Chlamydomonas reinhardtii} PDB: 3mx9_A*
Length = 362
Score = 29.9 bits (66), Expect = 2.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 146 RNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHH 188
+ + + +K + E V +L S KKS+ HHHH
Sbjct: 320 VDQIAALNDSKTRKTTSETVRAVLDSLSEKKKSSPLEHHHHHH 362
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 29.8 bits (68), Expect = 2.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 306 APRNHPLPPPPAWTMRQA 323
+ R P+ P W MRQA
Sbjct: 10 SLRGEPIGRFPVWLMRQA 27
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 29.8 bits (68), Expect = 2.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 306 APRNHPLPPPPAWTMRQA 323
A P+ P W MRQA
Sbjct: 12 ALLRQPVDVTPVWMMRQA 29
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 29.8 bits (68), Expect = 2.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 306 APRNHPLPPPPAWTMRQA 323
A P P W MRQA
Sbjct: 17 ALLREPTDYTPIWLMRQA 34
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 29.8 bits (67), Expect = 2.2
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 71 NPRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSST 130
+ + + PP PPPPPP LPQPP L T
Sbjct: 390 QQQQQQQQQQQQQQQPP-------PPPPPPPPPQLPQPPPQAQPLLPQQSYQITAGKLGT 442
Query: 131 EYRSNS 136
R +
Sbjct: 443 GRRFTT 448
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 29.4 bits (67), Expect = 2.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 306 APRNHPLPPPPAWTMRQA 323
A R + PP W MRQA
Sbjct: 18 AVRGKEVERPPVWLMRQA 35
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 28.8 bits (64), Expect = 3.6
Identities = 12/57 (21%), Positives = 14/57 (24%)
Query: 300 PSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPR 356
+ PQ A GR PP + P PPP R
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Length = 136
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 150 SHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHHPRHRRLTPPDIDQLPVR 205
SH T+ GA +P + + + A+G++ H R + R
Sbjct: 2 SHMTTTEAGASAPSPAVDGAVNQTARQAEADGTDIVTDHDRGVHGYHKQKAEHLKR 57
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 28.9 bits (65), Expect = 3.7
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 96 RPPPPPPVPLPQPPKPRGTYLGTNG 120
P + P G+ L T G
Sbjct: 223 AHAAPAVPGSGKRPPVHGSVLVTGG 247
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 28.9 bits (65), Expect = 3.8
Identities = 6/56 (10%), Positives = 8/56 (14%), Gaps = 12/56 (21%)
Query: 310 HPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARS--------VIPMPPPPPPPPRW 357
H + P + I V P W
Sbjct: 197 HGVDTPATEFLIAPNRCIV----ALPRTFQIKGDTVGDNYTFVGPTYGDRSHQGTW 248
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 28.6 bits (65), Expect = 3.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 305 QAPRNHPLPPPPAWTMRQA 323
+A R P W MRQA
Sbjct: 19 KAARGEKADHTPVWYMRQA 37
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 28.7 bits (65), Expect = 4.2
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 300 PSIPPQAPRNHPLPPPPA-WTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPP 354
P +PP P ++P P + W + G PC PP +++ P P P
Sbjct: 2 PQLPPA-PDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.0 bits (64), Expect = 4.5
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 236 ISRVEEGSIAERAGLR-PGDSILQVNGIPFTGISHEEAL 273
S E S G+ G I ++G S+ +
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRV 798
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 28.4 bits (63), Expect = 5.8
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 293 LSMTVRSPSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPP 352
+ RSP + +PP + Q Y + P Y S +
Sbjct: 43 PTDYDRSPFVTSPIS--MTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSY 100
Query: 353 PPPRWNYSARSSKDTVRKVELNIEP 377
S S + ++ L EP
Sbjct: 101 MDSYQTSSPASIPHLILEL-LKCEP 124
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.0 bits (61), Expect = 6.6
Identities = 12/58 (20%), Positives = 17/58 (29%)
Query: 87 PGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSPSNNTSSS 144
I R PP Q P + T +S +P ++SSS
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSS 59
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 28.2 bits (63), Expect = 6.6
Identities = 6/65 (9%), Positives = 14/65 (21%), Gaps = 10/65 (15%)
Query: 303 PPQAPRNHPLPPPPAWTMRQ---AYSWIDRQGRPCSPPLDYARSV-------IPMPPPPP 352
P+ ++ + + C P ++ +P
Sbjct: 156 SPELIKSAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRND 215
Query: 353 PPPRW 357
P W
Sbjct: 216 QVPSW 220
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 28.0 bits (62), Expect = 6.9
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
Query: 78 SKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQPSSTEYRSNSP 137
S + + G Y IV+ P P +P T L + S T
Sbjct: 354 SSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQT-LTSECSRLCRNGYCTPTGKCCC 412
Query: 138 SNNTSSSYRNTSSHSHGTKKGALSPEQVLKMLTSGGGGKKSAEGSEEHHHH 188
S + T+ + G + + G G + + HHHH
Sbjct: 413 SPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDHHHHHH 463
>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
{Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
4ej7_A* 3r78_A*
Length = 272
Score = 28.1 bits (62), Expect = 7.0
Identities = 7/55 (12%), Positives = 12/55 (21%)
Query: 303 PPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPPLDYARSVIPMPPPPPPPPRW 357
P + R L + D P++ + P P
Sbjct: 141 PFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVV 195
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 28.2 bits (62), Expect = 7.0
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 72 PRASHRSKAGLYYSPPGTSYTIVERPPPPPPVPLPQPPKP 111
PR SH + + + PP P P P PP
Sbjct: 16 PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA 55
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family
transcriptional regulator, structural genom 2, RHA08332,
MCSG; 2.20A {Rhodococcus SP}
Length = 207
Score = 27.8 bits (62), Expect = 7.1
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 347 MPPPPPPPPRWNYSARSSKDTVRKVELNIEPGQSLGLMIRGGVEYNLGIFITGVDKDSVA 406
+ P R +++D + V + L G + T VD+ VA
Sbjct: 1 LRSRRKPSSRIGRRPSTTQDRISTV--------GIELFTEQGFDA------TSVDE--VA 44
Query: 407 ERAGLLVSQLTLYQ-F-IKEFLILSDHD 432
E +G +++ TL++ F K + D D
Sbjct: 45 EASG--IARRTLFRYFPSKNAIPWGDFD 70
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 28.1 bits (62), Expect = 7.3
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 300 PSIPPQAPRNHPLPPPPAWTMRQAYSWIDRQGRPCSPP----LDYARSVIPMPPPPPPPP 355
+A + P P + I +G P L R+ +P PP PP
Sbjct: 18 DGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP-TKPPLPPA 76
Query: 356 RWNYSARSSK---DTVRKV 371
R + V V
Sbjct: 77 RTQGTPVHLNYRQKGVIDV 95
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 27.6 bits (60), Expect = 9.3
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 84 YSPPGTSYTIVERPPPPPPVPLPQPPKPRGTYLGTNGSSYRTQ 126
Y+ P + + + PP +P PQ +GT S +
Sbjct: 11 YNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.404
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,660,151
Number of extensions: 491203
Number of successful extensions: 3077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2656
Number of HSP's successfully gapped: 482
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.6 bits)