BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1498
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EGA|A Chain A, Crystal Structure Of Pellino2 Fha Domain At 1.8 Angstroms
Resolution
Length = 263
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 6/68 (8%)
Query: 19 KIGRSSEKPIDFIVLDTLQAGVDHKNMA----STISRFACRILCNR-KTLECRVFAAGFD 73
++GRS+E PIDF+V DT+ +G + + A STISRFACRI+C+R + R+FAAGFD
Sbjct: 91 QVGRSTESPIDFVVTDTI-SGSQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFD 149
Query: 74 SSSNIFLG 81
SS NIFLG
Sbjct: 150 SSKNIFLG 157
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 82 IGRSSEKPIDFIVLDTLQAGVDHKNMASTISRSKISSFV 120
+GRS+E PIDF+V DT+ +G + + A I++S IS F
Sbjct: 92 VGRSTESPIDFVVTDTI-SGSQNTDEAQ-ITQSTISRFA 128
>pdb|3EGB|A Chain A, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution.
pdb|3EGB|B Chain B, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution
Length = 285
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 6/68 (8%)
Query: 19 KIGRSSEKPIDFIVLDTLQAGVDHKNMA----STISRFACRILCNR-KTLECRVFAAGFD 73
++GRS+E PIDF+V DT+ +G + + A STISRFACRI+C+R + R+FAAGFD
Sbjct: 99 QVGRSTESPIDFVVTDTI-SGSQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFD 157
Query: 74 SSSNIFLG 81
SS NIFLG
Sbjct: 158 SSKNIFLG 165
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRSKISSFV 120
D +++F +GRS+E PIDF+V DT+ +G + + A I++S IS F
Sbjct: 92 DKDTDMFQ-VGRSTESPIDFVVTDTI-SGSQNTDEAQ-ITQSTISRFA 136
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 34 DTLQAGVDHKNMASTISRFACRIL 57
+TLQAG+D MA+ I+++A R++
Sbjct: 110 NTLQAGIDQVAMAAPITKWAHRVM 133
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 34 DTLQAGVDHKNMASTISRFACRIL 57
+TLQAG+D MA+ I+++A R++
Sbjct: 110 NTLQAGIDQVAMAAPITKWAHRVM 133
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 34 DTLQAGVDHKNMASTISRFACRIL 57
+TLQAG+D MA+ I+++A R++
Sbjct: 110 NTLQAGIDQVAMAAPITKWAHRVM 133
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 34 DTLQAGVDHKNMASTISRFACRIL 57
+TLQAG+D MA+ I+++A R++
Sbjct: 110 NTLQAGIDQVAMAAPITKWAHRVM 133
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 34 DTLQAGVDHKNMASTISRFACRIL 57
+TLQAG+D MA+ I+++A R++
Sbjct: 110 NTLQAGIDQVAMAAPITKWAHRVM 133
>pdb|3SAQ|A Chain A, Structure Of D13, The Scaffolding Protein Of Vaccinia
Virus
pdb|3SAQ|B Chain B, Structure Of D13, The Scaffolding Protein Of Vaccinia
Virus
Length = 576
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 72 FDSSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISRSKI 116
+ S N++ G RS+E K D + D G+D KN ISR ++
Sbjct: 425 WTSQRNVYNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEV 470
>pdb|3SAM|A Chain A, Structure Of D13, The Scaffolding Protein Of Vaccinia
Virus (Mutant D513g)
pdb|3SAM|B Chain B, Structure Of D13, The Scaffolding Protein Of Vaccinia
Virus (Mutant D513g)
pdb|3SAM|C Chain C, Structure Of D13, The Scaffolding Protein Of Vaccinia
Virus (Mutant D513g)
Length = 576
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 72 FDSSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISRSKI 116
+ S N++ G RS+E K D + D G+D KN ISR ++
Sbjct: 425 WTSQRNVYNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEV 470
>pdb|2YGC|A Chain A, Structure Of Vaccinia Virus D13 Scaffolding Protein
pdb|2YGC|B Chain B, Structure Of Vaccinia Virus D13 Scaffolding Protein
pdb|2YGC|C Chain C, Structure Of Vaccinia Virus D13 Scaffolding Protein
Length = 569
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 72 FDSSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISRSKI 116
+ S N++ G RS+E K D + D G+D KN ISR ++
Sbjct: 418 WTSQRNVYNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEV 463
>pdb|2YGB|A Chain A, Structure Of Vaccinia Virus D13 Scaffolding Protein
pdb|2YGB|B Chain B, Structure Of Vaccinia Virus D13 Scaffolding Protein
pdb|2YGB|C Chain C, Structure Of Vaccinia Virus D13 Scaffolding Protein
Length = 569
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 72 FDSSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISRSKI 116
+ S N++ G RS+E K D + D G+D KN ISR ++
Sbjct: 418 WTSQRNVYNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEV 463
>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
Ppl2, A Novel Chimerolectin From Parkia Platycephala
Seeds Exhibiting Endochitinolytic Activity
Length = 271
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 NIFLGIGRSSEKPIDFIVLDTLQAGVDH 104
N FLG GRSS +P+ VLD + ++H
Sbjct: 102 NNFLG-GRSSSRPLGDAVLDGVDFDIEH 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,979,702
Number of Sequences: 62578
Number of extensions: 92500
Number of successful extensions: 225
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 27
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)