BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1498
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O77237|PELI_DROME Protein pellino OS=Drosophila melanogaster GN=Pli PE=1 SV=1
Length = 424
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/65 (66%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 19 KIGRSSEKPIDFIVLDTLQAG-VDHKNMASTISRFACRILCNR-KTLECRVFAAGFDSSS 76
++GRSSE PIDF+V+DTL D K M STISRFACRIL NR + + R+FAAGFDSS
Sbjct: 112 QVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRILVNRCEPAKARIFAAGFDSSR 171
Query: 77 NIFLG 81
NIFLG
Sbjct: 172 NIFLG 176
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAG-VDHKNMASTISR 113
D+ +++F +GRSSE PIDF+V+DTL D K M STISR
Sbjct: 105 DTETDMF-QVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISR 145
>sp|Q96FA3|PELI1_HUMAN E3 ubiquitin-protein ligase pellino homolog 1 OS=Homo sapiens
GN=PELI1 PE=1 SV=2
Length = 418
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Query: 19 KIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISRFACRILCNRK-TLECRVFAAGFDS 74
+IGRS+E PIDF+V DT+ Q+ D +++ STISRFACRI+C R R++AAGFDS
Sbjct: 101 QIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACRIICERNPPFTARIYAAGFDS 160
Query: 75 SSNIFLG 81
S NIFLG
Sbjct: 161 SKNIFLG 167
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISR 113
DS++++F IGRS+E PIDF+V DT+ Q+ D +++ STISR
Sbjct: 94 DSNTDMF-QIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISR 136
>sp|Q8C669|PELI1_MOUSE E3 ubiquitin-protein ligase pellino homolog 1 OS=Mus musculus
GN=Peli1 PE=1 SV=2
Length = 418
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Query: 19 KIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISRFACRILCNRK-TLECRVFAAGFDS 74
+IGRS+E PIDF+V DT+ Q+ D +++ STISRFACRI+C R R++AAGFDS
Sbjct: 101 QIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACRIICERSPPFTARIYAAGFDS 160
Query: 75 SSNIFLG 81
S NIFLG
Sbjct: 161 SKNIFLG 167
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 4/44 (9%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISR 113
DS++++F IGRS+E PIDF+V DT+ Q+ D +++ STISR
Sbjct: 94 DSNTDMF-QIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISR 136
>sp|Q8BST6|PELI2_MOUSE E3 ubiquitin-protein ligase pellino homolog 2 OS=Mus musculus
GN=Peli2 PE=1 SV=2
Length = 419
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 19 KIGRSSEKPIDFIVLDTLQAGV--DHKNMASTISRFACRILCNR-KTLECRVFAAGFDSS 75
++GRS+E PIDF+V DT+ G D + STISRFACRI+C+R + R+FAAGFDSS
Sbjct: 103 QVGRSTESPIDFVVTDTVSGGQNEDAQITQSTISRFACRIVCDRNEPYTARIFAAGFDSS 162
Query: 76 SNIFLG 81
NIFLG
Sbjct: 163 KNIFLG 168
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRSKISSF 119
D +++F +GRS+E PIDF+V DT+ G +N + I++S IS F
Sbjct: 96 DKDTDMF-QVGRSTESPIDFVVTDTVSGG---QNEDAQITQSTISRF 138
>sp|Q9HAT8|PELI2_HUMAN E3 ubiquitin-protein ligase pellino homolog 2 OS=Homo sapiens
GN=PELI2 PE=1 SV=1
Length = 420
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 6/68 (8%)
Query: 19 KIGRSSEKPIDFIVLDTLQAGVDHKNMA----STISRFACRILCNR-KTLECRVFAAGFD 73
++GRS+E PIDF+V DT+ +G + + A STISRFACRI+C+R + R+FAAGFD
Sbjct: 103 QVGRSTESPIDFVVTDTI-SGSQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFD 161
Query: 74 SSSNIFLG 81
SS NIFLG
Sbjct: 162 SSKNIFLG 169
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRSKISSF 119
D +++F +GRS+E PIDF+V DT+ +G + + A I++S IS F
Sbjct: 96 DKDTDMF-QVGRSTESPIDFVVTDTI-SGSQNTDEAQ-ITQSTISRF 139
>sp|Q8BXR6|PELI3_MOUSE E3 ubiquitin-protein ligase pellino homolog 3 OS=Mus musculus
GN=Peli3 PE=2 SV=2
Length = 445
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 19 KIGRSSEKPIDFIVLDTLQAG--VDHKNMASTISRFACRILCNRKT-LECRVFAAGFDSS 75
+IGRS+E IDF+V DT G + + STISR+ACRILC+R+ R++AAGFD+S
Sbjct: 128 QIGRSTENMIDFVVTDTSPGGGATEGPSAQSTISRYACRILCDRRPPYTARIYAAGFDAS 187
Query: 76 SNIFLG 81
SNIFLG
Sbjct: 188 SNIFLG 193
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAG--VDHKNMASTISR 113
DS ++F IGRS+E IDF+V DT G + + STISR
Sbjct: 121 DSDKDMF-QIGRSTENMIDFVVTDTSPGGGATEGPSAQSTISR 162
>sp|Q8N2H9|PELI3_HUMAN E3 ubiquitin-protein ligase pellino homolog 3 OS=Homo sapiens
GN=PELI3 PE=1 SV=2
Length = 469
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 19 KIGRSSEKPIDFIVLDTLQAG--VDHKNMASTISRFACRILCNRKT-LECRVFAAGFDSS 75
+IGRS+E IDF+V DT G + + STISR+ACRILC+R+ R++AAGFD+S
Sbjct: 152 QIGRSTENMIDFVVTDTSPGGGAAEGPSAQSTISRYACRILCDRRPPYTARIYAAGFDAS 211
Query: 76 SNIFLG 81
SNIFLG
Sbjct: 212 SNIFLG 217
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 73 DSSSNIFLGIGRSSEKPIDFIVLDTLQAG--VDHKNMASTISR 113
DS +++F IGRS+E IDF+V DT G + + STISR
Sbjct: 145 DSDTDMF-QIGRSTENMIDFVVTDTSPGGGAAEGPSAQSTISR 186
>sp|Q9JXM2|DCDA_NEIMB Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=lysA PE=3 SV=1
Length = 414
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 66 RVFAAGFDSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKNMAS 109
RV AAG D++ IF G+G+ SE I+F L AGV NM S
Sbjct: 80 RVLAAGGDAAKTIFSGVGK-SEAEIEF----ALNAGVKCFNMES 118
>sp|Q9JWA6|DCDA_NEIMA Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=lysA PE=3 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 66 RVFAAGFDSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKNMAS 109
RV AAG D++ IF G+G+ SE I+F L AGV NM S
Sbjct: 80 RVLAAGGDAAKTIFSGVGK-SEAEIEF----ALNAGVKCFNMES 118
>sp|C4LIX8|RUVA_CORK4 Holliday junction ATP-dependent DNA helicase RuvA
OS=Corynebacterium kroppenstedtii (strain DSM 44385 /
CCUG 35717) GN=ruvA PE=3 SV=1
Length = 207
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 26 KPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRS 85
KP +F + T + + +N+ R A RI+ + K+ + VF +G DS+S G+G +
Sbjct: 93 KPDEFARIITDEDDAELRNVKGIGKRTAERIIVDLKS-KVAVFDSG-DSASEPQSGVGGN 150
Query: 86 SEKPIDFIVLDTL 98
SE +D V+ T+
Sbjct: 151 SEAEVDSGVVGTV 163
>sp|P47052|DHSX_YEAST Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YJL045W PE=1 SV=1
Length = 634
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 32 VLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSEKPID 91
+ DTLQ G+ HK +AS I + L + A G +S I L + R+ +K +
Sbjct: 458 IADTLQPGLPHKPLASNIGHESIANLDKVRN------ARGSLKTSQIRLNMQRTMQKDVS 511
Query: 92 -FIVLDTLQAGV 102
F DTL GV
Sbjct: 512 VFRTQDTLDEGV 523
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,718,536
Number of Sequences: 539616
Number of extensions: 1276422
Number of successful extensions: 2825
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2796
Number of HSP's gapped (non-prelim): 32
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)