Query psy1498
Match_columns 122
No_of_seqs 93 out of 95
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 17:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04710 Pellino: Pellino; In 100.0 5.9E-47 1.3E-51 324.2 4.9 88 14-102 94-185 (416)
2 KOG3842|consensus 100.0 2.1E-44 4.5E-49 305.7 4.9 88 14-102 107-198 (429)
3 PF04710 Pellino: Pellino; In 99.1 1.7E-11 3.8E-16 106.3 -0.6 47 70-117 89-138 (416)
4 KOG3842|consensus 99.1 4.2E-11 9.2E-16 103.0 1.4 50 67-117 99-151 (429)
5 smart00240 FHA Forkhead associ 64.0 19 0.00042 20.9 4.1 45 20-80 3-47 (52)
6 cd00060 FHA Forkhead associate 54.6 14 0.00031 23.6 2.6 33 16-61 22-54 (102)
7 PF00498 FHA: FHA domain; Int 49.3 21 0.00045 22.1 2.6 45 19-80 2-46 (68)
8 COG2403 Predicted GTPase [Gene 48.3 3.6 7.7E-05 37.1 -1.4 20 41-60 135-154 (449)
9 PRK11525 dinD DNA-damage-induc 20.8 13 0.00029 31.7 -2.3 25 47-71 81-106 (279)
10 cd03111 CpaE_like This protein 19.7 89 0.0019 21.3 2.0 12 29-40 44-55 (106)
No 1
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=100.00 E-value=5.9e-47 Score=324.20 Aligned_cols=88 Identities=50% Similarity=0.770 Sum_probs=55.4
Q ss_pred ccceeeeccCCCCCCCeEEeccCCCCc---cCccccccccceeeeeeecCC-CceeeEeecccCCCCCeeeccCCccccc
Q psy1498 14 QVYQHKIGRSSEKPIDFIVLDTLQAGV---DHKNMASTISRFACRILCNRK-TLECRVFAAGFDSSSNIFLGIGRSSEKP 89 (122)
Q Consensus 14 ~~dMFQiGRs~e~piDFvV~dt~~g~~---~~~~~~sTiSRfAcRil~~R~-p~~aRiyAagFDss~nIFlGegrsKw~~ 89 (122)
.+||||||||+|+||||||+||+||++ ++++.|||||||||||+|||+ ||+|||||||||+++||||||+|+||+.
T Consensus 94 ~tDMFQIGRSte~~IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLgekA~KW~~ 173 (416)
T PF04710_consen 94 DTDMFQIGRSTESPIDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGEKAPKWKN 173 (416)
T ss_dssp TEEEEEEES--STT-SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-TTS-EEE-
T ss_pred CcchhhhccCCCCCcCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehhccccccc
Confidence 578999999999999999999999964 789999999999999999999 9999999999999999999999999999
Q ss_pred cCceeeecccCCc
Q psy1498 90 IDFIVLDTLQAGV 102 (122)
Q Consensus 90 iD~vvmDglTtn~ 102 (122)
.|. .|||||||+
T Consensus 174 ~~~-~~DGLTTNG 185 (416)
T PF04710_consen 174 PDG-EMDGLTTNG 185 (416)
T ss_dssp TTS--EEE--SS-
T ss_pred CCC-Ccccccccc
Confidence 887 999999997
No 2
>KOG3842|consensus
Probab=100.00 E-value=2.1e-44 Score=305.66 Aligned_cols=88 Identities=49% Similarity=0.724 Sum_probs=84.5
Q ss_pred ccceeeeccCCCCCCCeEEeccCCCCc---cCccccccccceeeeeeecCC-CceeeEeecccCCCCCeeeccCCccccc
Q psy1498 14 QVYQHKIGRSSEKPIDFIVLDTLQAGV---DHKNMASTISRFACRILCNRK-TLECRVFAAGFDSSSNIFLGIGRSSEKP 89 (122)
Q Consensus 14 ~~dMFQiGRs~e~piDFvV~dt~~g~~---~~~~~~sTiSRfAcRil~~R~-p~~aRiyAagFDss~nIFlGegrsKw~~ 89 (122)
..||||||||+|+||||||+||.||++ +.+..|||||||||||||||+ ||+|||||||||+++|||||||++||+.
T Consensus 107 ~tDMFQiGRstes~IDFvV~DT~~g~~~~~da~v~qSTISRfACRIl~dR~~p~~AriyAAGFDss~NIflgeka~KW~~ 186 (429)
T KOG3842|consen 107 DTDMFQIGRSTESPIDFVVTDTWPGSQEHSDAQVRQSTISRFACRILCDRNEPYTARIYAAGFDSSKNIFLGEKAAKWKT 186 (429)
T ss_pred CcchhhhccCcCCCcceEEecccCCCcccccchhhhhhhhhheeeeeeccCCccceeEEecccccccceeccchhhcccC
Confidence 368999999999999999999999984 788999999999999999999 9999999999999999999999999999
Q ss_pred cCceeeecccCCc
Q psy1498 90 IDFIVLDTLQAGV 102 (122)
Q Consensus 90 iD~vvmDglTtn~ 102 (122)
.|+ +|||||||+
T Consensus 187 ~dg-~mDGLTTNG 198 (429)
T KOG3842|consen 187 SDG-EMDGLTTNG 198 (429)
T ss_pred CCc-ccccccccc
Confidence 888 999999996
No 3
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=99.07 E-value=1.7e-11 Score=106.29 Aligned_cols=47 Identities=45% Similarity=0.698 Sum_probs=25.5
Q ss_pred cccCCCCCeeeccCCccccccCceeeecccCC---cCCcccccceeeeeee
Q psy1498 70 AGFDSSSNIFLGIGRSSEKPIDFIVLDTLQAG---VDHKNMASTISRSKIS 117 (122)
Q Consensus 70 agFDss~nIFlGegrsKw~~iD~vvmDglTtn---~~~~~~~sTisR~~~~ 117 (122)
=.+|+++|||| +||+++.+|||||||++.+. ++++..|||||||||-
T Consensus 89 Y~~D~~tDMFQ-IGRSte~~IDFvV~dt~~G~~~~~~~~~~qStISRfACR 138 (416)
T PF04710_consen 89 YTHDPDTDMFQ-IGRSTESPIDFVVMDTVPGGQDNEDTQPTQSTISRFACR 138 (416)
T ss_dssp EEEETTEEEEE-EES--STT-SEE---------------EEE--S-TT-EE
T ss_pred eecCCCcchhh-hccCCCCCcCEEEeCCCCCCCcCCCCCccccchhheeEE
Confidence 35799999998 99999999999999999875 3788899999999994
No 4
>KOG3842|consensus
Probab=99.06 E-value=4.2e-11 Score=102.99 Aligned_cols=50 Identities=44% Similarity=0.590 Sum_probs=43.9
Q ss_pred EeecccCCCCCeeeccCCccccccCceeeecccCCc---CCcccccceeeeeee
Q psy1498 67 VFAAGFDSSSNIFLGIGRSSEKPIDFIVLDTLQAGV---DHKNMASTISRSKIS 117 (122)
Q Consensus 67 iyAagFDss~nIFlGegrsKw~~iD~vvmDglTtn~---~~~~~~sTisR~~~~ 117 (122)
|.-=.+|+++|||+ +||+++++|||||||+..+.. +++..|||||||||-
T Consensus 99 vvEYt~D~~tDMFQ-iGRstes~IDFvV~DT~~g~~~~~da~v~qSTISRfACR 151 (429)
T KOG3842|consen 99 VVEYTHDSDTDMFQ-IGRSTESPIDFVVTDTWPGSQEHSDAQVRQSTISRFACR 151 (429)
T ss_pred EEEeccCCCcchhh-hccCcCCCcceEEecccCCCcccccchhhhhhhhhheee
Confidence 33345799999998 999999999999999998773 788899999999995
No 5
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=63.97 E-value=19 Score=20.89 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=27.7
Q ss_pred eccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCceeeEeecccCCCCCeee
Q psy1498 20 IGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFL 80 (122)
Q Consensus 20 iGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~~aRiyAagFDss~nIFl 80 (122)
|||..+ ..|+++-|. +|||..|+|..+.+. .++-....+..-+|+
T Consensus 3 iGr~~~-~~~i~~~~~------------~vs~~H~~i~~~~~~---~~~i~d~~s~~gt~v 47 (52)
T smart00240 3 IGRSSE-DCDIQLPGP------------SISRRHAEIVYDGGG---RFYLIDLGSTNGTFV 47 (52)
T ss_pred eCCCCC-CCCEEeCCC------------CcchhHcEEEECCCC---eEEEEECCCCCCeeE
Confidence 788875 356666543 499999999887653 333333334444443
No 6
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=54.61 E-value=14 Score=23.64 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred ceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC
Q psy1498 16 YQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK 61 (122)
Q Consensus 16 dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~ 61 (122)
.-+-|||+.+. .|+++- ...|||..|+|..+.+
T Consensus 22 ~~~~iGr~~~~-~~i~l~------------~~~iS~~H~~i~~~~~ 54 (102)
T cd00060 22 GTYTIGRDSDN-CDIVLD------------DPSVSRRHAVIRYDGD 54 (102)
T ss_pred CeEEECcCCCc-CCEEcC------------CCCeeCcceEEEEcCC
Confidence 45679999887 444443 2689999999998874
No 7
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=49.31 E-value=21 Score=22.07 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=30.5
Q ss_pred eeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCceeeEeecccCCCCCeee
Q psy1498 19 KIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFL 80 (122)
Q Consensus 19 QiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~~aRiyAagFDss~nIFl 80 (122)
-|||+ +..|.++.| .+|||.=|+|.++.. -.+|--..++..-.|+
T Consensus 2 ~iGR~--~~~di~l~~------------~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~v 46 (68)
T PF00498_consen 2 TIGRS--PDCDIVLPD------------PSISRRHARISFDDD---GQFYIEDLGSTNGTFV 46 (68)
T ss_dssp EEESS--TTSSEEETS------------TTSSTTSEEEEEETT---EEEEEEESSSSS-EEE
T ss_pred EEcCC--CCCCEEECC------------HheeeeeeEEEEece---eeEEEEeCCCCCcEEE
Confidence 48999 556777663 469999999998877 3344444456666666
No 8
>COG2403 Predicted GTPase [General function prediction only]
Probab=48.30 E-value=3.6 Score=37.06 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.2
Q ss_pred cCccccccccceeeeeeecC
Q psy1498 41 DHKNMASTISRFACRILCNR 60 (122)
Q Consensus 41 ~~~~~~sTiSRfAcRil~~R 60 (122)
.++.+.|++|||+||+|.+|
T Consensus 135 rtg~GKsaVS~~v~r~l~er 154 (449)
T COG2403 135 RTGVGKSAVSRYVARLLRER 154 (449)
T ss_pred ccccchhHHHHHHHHHHHHc
Confidence 56788999999999999988
No 9
>PRK11525 dinD DNA-damage-inducible protein D; Provisional
Probab=20.80 E-value=13 Score=31.72 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.3
Q ss_pred ccccceeeeeeecCC-CceeeEeecc
Q psy1498 47 STISRFACRILCNRK-TLECRVFAAG 71 (122)
Q Consensus 47 sTiSRfAcRil~~R~-p~~aRiyAag 71 (122)
.-.|||||=+++..- |-+.-|.+|+
T Consensus 81 ~~LSRyACYLIaqNGDprK~~IA~aQ 106 (279)
T PRK11525 81 IMLSRYACYLIVQNGDPRKPVIAFGQ 106 (279)
T ss_pred eeeehHHHHHHHhcCCCccHHHHHHH
Confidence 346899999999888 8887777775
No 10
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=19.73 E-value=89 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=10.4
Q ss_pred CeEEeccCCCCc
Q psy1498 29 DFIVLDTLQAGV 40 (122)
Q Consensus 29 DFvV~dt~~g~~ 40 (122)
|+|+.|+.||-.
T Consensus 44 D~IIiDtpp~~~ 55 (106)
T cd03111 44 DYVVVDLGRSLD 55 (106)
T ss_pred CEEEEeCCCCcC
Confidence 999999988764
Done!