Query psy1498
Match_columns 122
No_of_seqs 93 out of 95
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 17:26:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1498.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1498hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cz5a2 d.31.1.1 (A:92-185) C- 61.0 2.8 0.00021 27.0 2.8 26 14-39 40-68 (94)
2 d1g6ga_ b.26.1.2 (A:) Phosphot 58.9 3.8 0.00028 26.9 3.2 34 15-61 35-68 (127)
3 d1gxca_ b.26.1.2 (A:) Chk2 kin 58.2 4.5 0.00033 25.9 3.4 59 15-80 19-79 (116)
4 d2affa1 b.26.1.2 (A:3-100) Ant 46.4 9.3 0.00068 23.4 3.4 32 16-61 23-54 (98)
5 d2ff4a3 b.26.1.2 (A:284-382) P 43.1 8.4 0.00061 24.0 2.8 49 15-81 22-70 (99)
6 d1lgpa_ b.26.1.2 (A:) Cell cyc 36.3 13 0.00092 23.5 2.8 33 16-61 24-56 (113)
7 d1mzka_ b.26.1.2 (A:) Kinase a 31.0 29 0.0021 22.0 4.0 47 18-80 32-78 (122)
8 d1dmza_ b.26.1.2 (A:) Phosphot 29.4 17 0.0013 24.5 2.7 34 16-63 27-60 (158)
9 d1y6kr1 b.1.2.1 (R:2-100) Inte 27.3 11 0.00081 22.6 1.3 21 62-91 73-93 (99)
10 d1uhta_ b.26.1.2 (A:) FHA doma 24.5 25 0.0018 22.3 2.7 49 16-81 33-81 (118)
11 d2brfa1 b.26.1.2 (A:8-108) Pol 24.0 31 0.0022 21.5 3.1 34 12-61 18-51 (101)
No 1
>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=61.03 E-value=2.8 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.5
Q ss_pred ccceeee---ccCCCCCCCeEEeccCCCC
Q psy1498 14 QVYQHKI---GRSSEKPIDFIVLDTLQAG 39 (122)
Q Consensus 14 ~~dMFQi---GRs~e~piDFvV~dt~~g~ 39 (122)
+-|.+++ |+.....|+|+|..|.|.+
T Consensus 40 ~GD~i~v~~~~~~g~~~i~F~Vv~t~P~g 68 (94)
T d1cz5a2 40 EQDNISVPGLTLAGQTGLLFKVVKTLPSK 68 (94)
T ss_dssp TTCEECCSSCCCSSCCCCSEEEEEESSSS
T ss_pred CCCEEEEeeccccCCceEeEEEEEEeCCC
Confidence 5578888 6777889999999999954
No 2
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=58.93 E-value=3.8 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=26.1
Q ss_pred cceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC
Q psy1498 15 VYQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK 61 (122)
Q Consensus 15 ~dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~ 61 (122)
.+.|-|||+.+ .|+++.|. .+|||.=|+|.++.+
T Consensus 35 ~~~~~iGR~~~--~d~~l~d~-----------~~VSr~Ha~i~~~~~ 68 (127)
T d1g6ga_ 35 KKVWTFGRNPA--CDYHLGNI-----------SRLSNKHFQILLGED 68 (127)
T ss_dssp CEEEEEESSTT--SSEECCSC-----------TTSCSSCEEEEECTT
T ss_pred CccEEEccCcc--cCccCCCc-----------chhhHHHHHeeeccc
Confidence 35688999865 77777653 469999999998755
No 3
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.16 E-value=4.5 Score=25.94 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=36.7
Q ss_pred cceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC-CceeeEeecccCCCCC-eee
Q psy1498 15 VYQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK-TLECRVFAAGFDSSSN-IFL 80 (122)
Q Consensus 15 ~dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~-p~~aRiyAagFDss~n-IFl 80 (122)
.+.|=|||+.+ -|+++-|...+. .....+|||.=|+|.++.. .....+|-- |.|+| .|+
T Consensus 19 ~~~~~iGR~~~--cdi~l~~~~~~~---~~~~~~ISr~H~~I~~~~~~~~~~~~~i~--d~S~NGT~v 79 (116)
T d1gxca_ 19 NDNYWFGRDKS--CEYCFDEPLLKR---TDKYRTYSKKHFRIFREVGPKNSYIAYIE--DHSGNGTFV 79 (116)
T ss_dssp SSEEEEESSTT--CSEECCCGGGGG---SSGGGGSCTTCEEEEEEECTTSSEEEEEE--ECCSSCEEE
T ss_pred CCCEEeeeCCC--CCeEecCCcccc---ccccceEecceEEEEEecccCCCCEEEEE--CCCccCceE
Confidence 46789999865 788887652111 1123689999999998765 333333332 33444 665
No 4
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.44 E-value=9.3 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=23.8
Q ss_pred ceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC
Q psy1498 16 YQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK 61 (122)
Q Consensus 16 dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~ 61 (122)
.-+-|||+.+ .|+++-| ..|||..|+|..+..
T Consensus 23 ~~~~IGr~~~--~di~l~~------------~~is~~Ha~i~~~~~ 54 (98)
T d2affa1 23 STCLFGRGIE--CDIRIQL------------PVVSKQHCKIEIHEQ 54 (98)
T ss_dssp SEEEEESSTT--SSEEECC------------TTSCSSBEEEEECSS
T ss_pred CCEEEeeCCC--CCEEeCC------------CCcCceeEEEEEeCC
Confidence 4577999876 5777653 359999999998743
No 5
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=43.14 E-value=8.4 Score=24.00 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=30.2
Q ss_pred cceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCceeeEeecccCCCCCeeec
Q psy1498 15 VYQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLG 81 (122)
Q Consensus 15 ~dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~~aRiyAagFDss~nIFlG 81 (122)
..-+-|||+.+ .|.++-|+ +|||.=|+|..+-.- +|--..+|..-.|+.
T Consensus 22 ~~~~~IGR~~~--~di~l~d~------------~VSr~Ha~i~~~~~~----~~i~Dl~S~nGt~vN 70 (99)
T d2ff4a3 22 AAATRIGRLHD--NDIVLDSA------------NVSRHHAVIVDTGTN----YVINDLRSSNGVHVQ 70 (99)
T ss_dssp SSEEEEESSTT--SSEECCCT------------TSCTTCEEEEECSSC----EEEEECSCSSCCEET
T ss_pred CCCEEEeeCcC--CCEEECCc------------cccceeEEEEEeCCE----EEEEECCCcCCCeEC
Confidence 34567999865 57666543 699999999875332 233333444446663
No 6
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.26 E-value=13 Score=23.52 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=24.7
Q ss_pred ceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC
Q psy1498 16 YQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK 61 (122)
Q Consensus 16 dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~ 61 (122)
.-|-|||+.+ .|+++.|- .+|||.=|+|.++.+
T Consensus 24 ~~~~iGR~~~--~di~l~d~-----------~~iSr~Ha~I~~~~~ 56 (113)
T d1lgpa_ 24 REWTIGRRRG--CDLSFPSN-----------KLVSGDHCRIVVDEK 56 (113)
T ss_dssp SEEEEESSTT--SSEECTTC-----------TTSCTTCEEEEECTT
T ss_pred CCEeeCCCCC--CCeEecCC-----------CCcChHHeEEEEccc
Confidence 3578999765 67766532 369999999999865
No 7
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.99 E-value=29 Score=22.02 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred eeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCceeeEeecccCCCCCeee
Q psy1498 18 HKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFL 80 (122)
Q Consensus 18 FQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~~aRiyAagFDss~nIFl 80 (122)
+-|||+.+ .|.++-|. +|||.=|+|..+-+.. ++|.-...|..=-|+
T Consensus 32 ~~IGR~~~--~di~l~d~------------~vSr~Ha~i~~~~~~~--~~~v~DlgS~nGT~v 78 (122)
T d1mzka_ 32 VKLGRVSP--SDLALKDS------------EVSGKHAQITWNSTKF--KWELVDMGSLNGTLV 78 (122)
T ss_dssp EEEESSSS--CSEECCCT------------TSSSEEEEEEEETTTT--EEEEEETTCSSCCEE
T ss_pred EEecCCCC--CCEEECCC------------CcCccceEEEEeCCCC--EEEEeeCCCCCceEE
Confidence 56899765 57776543 6999999998764422 445555556555565
No 8
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.36 E-value=17 Score=24.52 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=25.7
Q ss_pred ceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCc
Q psy1498 16 YQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTL 63 (122)
Q Consensus 16 dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~ 63 (122)
+-|-|||+. ..|+++-|. .|||.=|.|..++.+.
T Consensus 27 ~~~~iGR~~--~~d~~i~~~------------~vS~~H~~I~~~~~~~ 60 (158)
T d1dmza_ 27 NPFFIGRSE--DCNCKIEDN------------RLSRVHCFIFKKRHAV 60 (158)
T ss_dssp SCEEEESST--TSSEECCCT------------TSCSSSEEEEEEECCC
T ss_pred CcEEecCCc--CccEEECCC------------cccCcceEEEEecccc
Confidence 457899974 368887653 6999999999887643
No 9
>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.34 E-value=11 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.0
Q ss_pred CceeeEeecccCCCCCeeeccCCccccccC
Q psy1498 62 TLECRVFAAGFDSSSNIFLGIGRSSEKPID 91 (122)
Q Consensus 62 p~~aRiyAagFDss~nIFlGegrsKw~~iD 91 (122)
.|.+||.|- .|.+.++|...+
T Consensus 73 ~Y~fRVrA~---------n~~g~S~Ws~t~ 93 (99)
T d1y6kr1 73 GYRARVRAV---------DGSRHSQWTVTN 93 (99)
T ss_dssp CEEEEEEEE---------ETTEECCCEECS
T ss_pred EEEEEEEEE---------cCCCcCCCcccC
Confidence 699999994 478889997765
No 10
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.46 E-value=25 Score=22.34 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=30.6
Q ss_pred ceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCCCceeeEeecccCCCCCeeec
Q psy1498 16 YQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLG 81 (122)
Q Consensus 16 dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~p~~aRiyAagFDss~nIFlG 81 (122)
..+.|||+.+ ..|.++-|. +|||.=|+|..+-. .+|.-..+|..=-|+.
T Consensus 33 ~~~~iGR~~~-~~di~l~d~------------~VSr~Ha~i~~~~~----~~~i~Dl~S~nGT~vn 81 (118)
T d1uhta_ 33 STIRVGRIVR-GNEIAIKDA------------GISTKHLRIESDSG----NWVIQDLGSSNGTLLN 81 (118)
T ss_dssp CCEEEESSST-TCSEECCSS------------SSCTTCEEEEECSS----SEEEECCCCSSCCEES
T ss_pred CEEEECCCCc-CCeEEeCcc------------CcchheeEEEEECC----EEEEEECCCcceeEEC
Confidence 3578999753 237776543 69999999987643 2444444444446653
No 11
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.00 E-value=31 Score=21.47 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=24.0
Q ss_pred ccccceeeeccCCCCCCCeEEeccCCCCccCccccccccceeeeeeecCC
Q psy1498 12 PYQVYQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRK 61 (122)
Q Consensus 12 ~~~~dMFQiGRs~e~piDFvV~dt~~g~~~~~~~~sTiSRfAcRil~~R~ 61 (122)
|.....+-|||+.+..|+ | .+|||-=|+|..+.+
T Consensus 18 ~~~~~~~~iGR~~~~~i~----d------------~~vSr~Ha~i~~~~~ 51 (101)
T d2brfa1 18 PSDGQALVLGRGPLTQVT----D------------RKCSRTQVELVADPE 51 (101)
T ss_dssp CSTTCCEEECSBTTTTBC----C------------TTSCSSCEEEEEETT
T ss_pred ecCCCeEEcccCcccccc----C------------CCcChhheEEEeccC
Confidence 344557789998765442 2 359999999998755
Done!