RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1498
         (122 letters)



>gnl|CDD|218222 pfam04710, Pellino, Pellino.  Pellino is involved in Toll-like
           signalling pathways, and associates with the kinase
           domain of the Pelle Ser/Thr kinase.
          Length = 416

 Score = 98.0 bits (244), Expect = 2e-25
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 4/67 (5%)

Query: 19  KIGRSSEKPIDFIVLDTLQAGVDHKN---MASTISRFACRILCNRK-TLECRVFAAGFDS 74
           +IGRS+E PIDF+V DT+  G D K      STISRFACRI+C+R+     R++AAGFDS
Sbjct: 99  QIGRSTESPIDFVVTDTVPGGQDKKETPITQSTISRFACRIVCDREPPYTARIYAAGFDS 158

Query: 75  SSNIFLG 81
           S NIFLG
Sbjct: 159 SKNIFLG 165



 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 4/44 (9%)

Query: 73  DSSSNIFLGIGRSSEKPIDFIVLDTLQAGVDHKN---MASTISR 113
           DS +++F  IGRS+E PIDF+V DT+  G D K      STISR
Sbjct: 92  DSDTDMF-QIGRSTESPIDFVVTDTVPGGQDKKETPITQSTISR 134


>gnl|CDD|202599 pfam03340, Pox_Rif, Poxvirus rifampicin resistance protein. 
          Length = 541

 Score = 26.6 bits (59), Expect = 3.8
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 74  SSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISRSKISS 118
           S  N++ G  RS++ K  D  + D    G+D  N    ISR ++  
Sbjct: 395 SQRNVYTGDNRSAKSKAKDLFINDPFIKGIDFLNKLDIISRMEVRF 440


>gnl|CDD|182181 PRK09983, pflD, putative formate acetyltransferase 2; Provisional.
          Length = 765

 Score = 26.3 bits (58), Expect = 4.9
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 56  ILCN-----RKTLECRVFAAGFDSSSNIFLG----IGRSSEKPIDFIVLDTLQ 99
           + CN     R T   R FA GF +     LG     GRS+   + F+ LD  Q
Sbjct: 302 VKCNDIVLLRSTSSARYFA-GFPTGYTALLGGLTENGRSAVNVLSFLCLDAYQ 353


>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme
           Gsa7p/Apg7p.  This model represents a family of
           eukaryotic proteins found in animals, plants, and
           yeasts, including Apg7p (YHR171W) from Saccharomyces
           cerevisiae and GSA7 from Pichia pastoris. Members are
           about 650 to 700 residues in length and include a
           central domain of about 150 residues shared with the
           ThiF/MoeB/HesA family of proteins. A low level of
           similarity to ubiquitin-activating enzyme E1 is
           described in a paper on peroxisome autophagy mediated by
           GSA7, and is the basis of the name ubiquitin activating
           enzyme E1-like protein. Members of the family appear to
           be involved in protein lipidation events analogous to
           ubiquitination and required for membrane fusion events
           during autophagy.
          Length = 664

 Score = 26.4 bits (58), Expect = 5.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 45  MASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSE 87
           + S  +R+   +LC+R        A GFDS   +  GIGRS  
Sbjct: 456 LDSREARWLPTVLCSRHKKIAISAALGFDSYVVMRHGIGRSES 498


>gnl|CDD|216171 pfam00883, Peptidase_M17, Cytosol aminopeptidase family,
          catalytic domain.  The two associated zinc ions and the
          active site are entirely enclosed within the C-terminal
          catalytic domain in leucine aminopeptidase.
          Length = 311

 Score = 25.7 bits (57), Expect = 8.3
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 9/54 (16%)

Query: 43 KNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSEKPIDFIVLD 96
          + +AS  S     +L + + LE      G        L + + SE P  FIVL 
Sbjct: 25 EKLASNYSDVKIEVL-DEEELE----ELGMGG----LLAVNKGSENPPRFIVLS 69


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0745    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,840,507
Number of extensions: 483591
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 12
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)