RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1498
(122 letters)
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin
ligase, substrate binding phosphoprotein, protein
binding; 1.80A {Homo sapiens} PDB: 3egb_A
Length = 263
Score = 76.7 bits (188), Expect = 3e-18
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 19 KIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISRFACRILCNRK-TLECRVFAAGFDS 74
++GRS+E PIDF+V DT+ Q + + STISRFACRI+C+R R+FAAGFDS
Sbjct: 91 QVGRSTESPIDFVVTDTISGSQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFDS 150
Query: 75 SSNIFLG 81
S NIFLG
Sbjct: 151 SKNIFLG 157
Score = 38.1 bits (88), Expect = 2e-04
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 72 FDSSSNIFLGIGRSSEKPIDFIVLDTL---QAGVDHKNMASTISR 113
D +++F +GRS+E PIDF+V DT+ Q + + STISR
Sbjct: 83 HDKDTDMF-QVGRSTESPIDFVVTDTISGSQNTDEAQITQSTISR 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.006
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 5 LDILLSNPYQVYQHKIGRSSEKPIDFIV-----------LDTLQAGVDHKNMASTISRFA 53
LLS ++ Q + F++ + T + + FA
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 54 ----CRILCNRKTLECRVFAAGFDSSSNIFL----GIGRSSEKPIDFIVLDTLQAGVDHK 105
R+ + L+ R + N+ + G G++ + LD +
Sbjct: 128 KYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTW------VALDVCLSYKVQC 178
Query: 106 NMASTI 111
M I
Sbjct: 179 KMDFKI 184
Score = 27.9 bits (61), Expect = 1.0
Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 32/118 (27%)
Query: 6 DILLSNPYQVYQHKIGRSSEKPIDFIVLDTL--------QAGVDH--------KNMASTI 49
+ ++++ + + +L L + DH ++ + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 50 SRFACR--------IL---CNRKTLE-----CRVFAAGFDSSSNIFLGIGRSSEKPID 91
R +L N K C++ FL ++ +D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 52 FACRI---LCNRKTLECRVFAAGFDSSSN 77
F R+ + N++ LE V A D+ +
Sbjct: 921 FLKRLPEQVVNKRALESLVKAGALDAFGD 949
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase;
2.40A {Bacillus anthracis str}
Length = 308
Score = 27.2 bits (61), Expect = 1.4
Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 29 DFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLECRVFAAGFD 73
+I ++ + + +++A + N G D
Sbjct: 35 SYIYVNMFEEQIPEEDLALVA-----EKVSNIN------TGIGAD 68
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 26.7 bits (60), Expect = 2.7
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 52 FACRI---LCNRKTLECRVFAAGFDSSSNIFLGIGRSS 86
R NR+ LE + + FD LG R++
Sbjct: 865 LCARTDTKKLNRRVLEKLIMSGAFDR-----LGPHRAA 897
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.9
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 5 LDILLSNPYQVYQHKIGRSSEKPIDFIVLDTLQAGVDHKNMASTISRFACRILCNRKTLE 64
LDI+++NP + H G ++ I +N ++ + + K
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKR-I-------------RENYSA----MIFETIVDGKLKT 1703
Query: 65 CRVFA-AGFDSSSNIFLG 81
++F S+S F
Sbjct: 1704 EKIFKEINEHSTSYTFRS 1721
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 26.2 bits (57), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 72 FDSSSNIFLGIGRSSE-KPIDFIVLDTLQAGVDHKNMASTISR 113
+ S N++ G RS+E K D + D G+D KN ISR
Sbjct: 425 WTSQRNVYNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISR 467
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 25.4 bits (56), Expect = 6.1
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 43 KNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSEKPIDFIVL 95
A IL + +E A G S L + R S IVL
Sbjct: 203 AAFAGKFPGAEAEIL-DEAQME----ALGMGS----LLSVARGSANRPRLIVL 246
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 25.4 bits (56), Expect = 7.0
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 43 KNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSEKPIDFIVL 95
K + +L + K ++ G + F +G+ S++P IVL
Sbjct: 207 KELGKAHKALKVEVL-DEKKIK----DLGMGA----FYAVGQGSDQPPRLIVL 250
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 25.0 bits (55), Expect = 9.6
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 43 KNMASTISRFACRILCNRKTLECRVFAAGFDSSSNIFLGIGRSSEKPIDFIVL 95
+ + S + F+ L ++ + G L +GR S + +
Sbjct: 191 RELTSKYATFSLDYL-DQDAMA----ELGMGC----ALAVGRGSYMSNYTVCM 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.387
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,713,503
Number of extensions: 88513
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 27
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)