BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14982
         (72 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
           With A Guide Rna
 pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
           With A Guide Rna
          Length = 1046

 Score = 28.5 bits (62), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 26  DPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQEFSADDK 72
           DPE E+  ++I   F G    KDI     T D E Q  E   SA DK
Sbjct: 173 DPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQ--ESRMSAIDK 217


>pdb|3B4N|A Chain A, Crystal Structure Analysis Of Pectate Lyase Peli From
          Erwinia Chrysanthemi
 pdb|3B4N|B Chain B, Crystal Structure Analysis Of Pectate Lyase Peli From
          Erwinia Chrysanthemi
 pdb|3B8Y|A Chain A, Crystal Structure Of Pectate Lyase Peli From Erwinia
          Chrysanthemi In Complex With Tetragalacturonic Acid
 pdb|3B8Y|B Chain B, Crystal Structure Of Pectate Lyase Peli From Erwinia
          Chrysanthemi In Complex With Tetragalacturonic Acid
          Length = 344

 Score = 25.8 bits (55), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 1  IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDET 60
          + L  P      T + +   D++     T+++    Q V+RG  +  D+ E +   D ET
Sbjct: 11 LTLAAPSFAAQTTLMLSQKSDVNYLGWSTDESKVARQEVYRGTTSNPDLRERIAVLDAET 70

Query: 61 QNFE 64
          + F+
Sbjct: 71 RTFK 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.126    0.333 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,020,540
Number of Sequences: 62578
Number of extensions: 59436
Number of successful extensions: 134
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)