Query psy14982
Match_columns 72
No_of_seqs 101 out of 232
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:29:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.7 2.3E-08 5E-13 48.3 3.3 21 30-50 1-21 (21)
2 smart00015 IQ Short calmodulin 98.4 2.9E-07 6.3E-12 46.2 3.0 22 29-50 2-23 (26)
3 PTZ00014 myosin-A; Provisional 97.1 0.00031 6.6E-09 58.8 2.7 40 10-49 778-819 (821)
4 KOG0520|consensus 96.8 0.00028 6.1E-09 60.3 0.1 44 8-51 809-854 (975)
5 KOG0520|consensus 96.6 0.0041 8.9E-08 53.4 5.1 46 7-52 864-936 (975)
6 smart00015 IQ Short calmodulin 96.3 0.001 2.2E-08 33.1 0.0 19 8-26 2-20 (26)
7 PF00612 IQ: IQ calmodulin-bin 96.3 0.00091 2E-08 31.9 -0.3 17 10-26 2-18 (21)
8 KOG0160|consensus 95.1 0.016 3.5E-07 49.4 2.6 40 8-47 672-713 (862)
9 KOG0160|consensus 95.0 0.033 7.1E-07 47.5 4.1 46 7-52 694-740 (862)
10 KOG0164|consensus 93.3 0.078 1.7E-06 45.4 2.9 41 9-50 696-738 (1001)
11 KOG4427|consensus 93.2 0.12 2.5E-06 44.7 3.9 28 27-54 27-54 (1096)
12 KOG2128|consensus 92.8 0.069 1.5E-06 47.6 2.1 45 7-51 590-643 (1401)
13 KOG0942|consensus 92.5 0.1 2.2E-06 45.2 2.6 26 27-52 26-51 (1001)
14 KOG0377|consensus 90.6 0.27 5.9E-06 40.4 3.2 21 30-50 17-37 (631)
15 PTZ00014 myosin-A; Provisional 89.5 0.42 9E-06 40.5 3.5 23 30-52 777-799 (821)
16 KOG0164|consensus 88.5 0.35 7.6E-06 41.6 2.4 26 29-55 695-720 (1001)
17 COG5022 Myosin heavy chain [Cy 87.5 0.49 1.1E-05 42.6 2.8 31 24-54 739-769 (1463)
18 KOG2128|consensus 86.0 0.92 2E-05 40.8 3.6 41 11-51 567-613 (1401)
19 PF08763 Ca_chan_IQ: Voltage g 80.9 2.3 5E-05 23.3 2.6 19 32-50 11-29 (35)
20 KOG0162|consensus 80.4 1.6 3.4E-05 38.0 2.8 27 25-51 691-717 (1106)
21 COG5022 Myosin heavy chain [Cy 79.7 1.8 3.9E-05 39.2 3.0 48 5-52 741-815 (1463)
22 KOG0377|consensus 75.8 1.3 2.7E-05 36.6 0.9 26 9-34 17-42 (631)
23 KOG4427|consensus 65.9 3.4 7.3E-05 36.2 1.3 33 7-43 28-60 (1096)
24 KOG0163|consensus 64.3 8.2 0.00018 34.1 3.3 24 28-51 811-834 (1259)
25 KOG1419|consensus 57.3 7 0.00015 32.9 1.7 18 30-47 340-357 (654)
26 PF15157 IQ-like: IQ-like 50.9 17 0.00038 23.8 2.5 22 29-50 46-67 (97)
27 KOG0161|consensus 50.3 20 0.00043 33.8 3.5 25 27-51 770-794 (1930)
28 KOG0161|consensus 42.8 22 0.00047 33.5 2.6 43 6-48 770-817 (1930)
29 PF07543 PGA2: Protein traffic 32.9 30 0.00065 23.6 1.6 26 42-67 101-126 (140)
30 PF06013 WXG100: Proteins of 1 26.7 29 0.00063 19.3 0.6 39 4-42 5-43 (86)
31 PHA00422 hypothetical protein 24.2 99 0.0021 19.2 2.6 31 8-46 11-41 (69)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.70 E-value=2.3e-08 Score=48.30 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK~~~ 50 (72)
+.||+.||+.||||+.|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999985
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=98.42 E-value=2.9e-07 Score=46.20 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q psy14982 29 TEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 29 ~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
++.+|++||+.||||+.|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999985
No 3
>PTZ00014 myosin-A; Provisional
Probab=97.13 E-value=0.00031 Score=58.82 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHH
Q psy14982 10 KAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDI 49 (72)
Q Consensus 10 ~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~ 49 (72)
..+++||+++|||..|+ .....+++.||+.+|||+.++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999887 34568999999999999999764
No 4
>KOG0520|consensus
Probab=96.84 E-value=0.00028 Score=60.30 Aligned_cols=44 Identities=34% Similarity=0.425 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhhcccccCCHHH--HHHHHHHHHHhhhHHHHHHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLEDPET--EKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~~~~--~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
...||..||.+||||+-|+..+ ..=+++|||++|||+.|+.|+.
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~k 854 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRK 854 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhe
Confidence 4467778888888887766432 3556777777777777777763
No 5
>KOG0520|consensus
Probab=96.57 E-value=0.0041 Score=53.40 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhhcccccCC---------------------------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 7 ETEKAATKIQAVFRDIDLED---------------------------PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~---------------------------~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
+...++.++|++||||+.+. ..+.+|+++||+.||-|..|.+|+..
T Consensus 864 k~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 864 KLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred HHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34567889999999986654 13689999999999999999998864
No 6
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.30 E-value=0.001 Score=33.08 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhcccccCC
Q psy14982 8 TEKAATKIQAVFRDIDLED 26 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~ 26 (72)
...+|++||+.+||+..++
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~ 20 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARK 20 (26)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999997665
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.27 E-value=0.00091 Score=31.91 Aligned_cols=17 Identities=35% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHhhhhhcccccCC
Q psy14982 10 KAATKIQAVFRDIDLED 26 (72)
Q Consensus 10 ~AAvkIQa~fRg~~vr~ 26 (72)
+||++||+.|||+..++
T Consensus 2 ~aai~iQ~~~R~~~~Rk 18 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARK 18 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999996654
No 8
>KOG0160|consensus
Probab=95.13 E-value=0.016 Score=49.36 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhcccccCCH--HHHHHHHHHHHHhhhHHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLEDP--ETEKAATKIQAVFRGHKTRK 47 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~~--~~~~AAtkIQA~fRGh~~RK 47 (72)
+..+++.||..||||..|+. .+..+++.||+..||+..|.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34455556666666554442 33344444444444444443
No 9
>KOG0160|consensus
Probab=95.00 E-value=0.033 Score=47.52 Aligned_cols=46 Identities=28% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhcccccCC-HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 7 ETEKAATKIQAVFRDIDLED-PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~-~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
....+++.||+..||+-.|+ ...+.||+.||+.+|+|..|++|+..
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~ 740 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL 740 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34678889999999987775 33678999999999999999998854
No 10
>KOG0164|consensus
Probab=93.26 E-value=0.078 Score=45.45 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982 9 EKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 9 ~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
..-++.||+++|||..|. ..+..++|.|+ +||-|+.|-.+.
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~v~ 738 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSYVQ 738 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 346788888888887776 45666777776 777776655443
No 11
>KOG4427|consensus
Probab=93.24 E-value=0.12 Score=44.70 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEETMK 54 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~~~k 54 (72)
+..+.||.+||+.+|||.+||++....+
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999986443
No 12
>KOG2128|consensus
Probab=92.83 E-value=0.069 Score=47.59 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhcccccCCH---------HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 7 ETEKAATKIQAVFRDIDLEDP---------ETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~~---------~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
....-++++|++.||+..+.. ......++||+++|+++.|+.|+.
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 344567889999998877752 345788899999999999999884
No 13
>KOG0942|consensus
Probab=92.51 E-value=0.1 Score=45.19 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
...+++|++||+.||||+.|++.+..
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999998753
No 14
>KOG0377|consensus
Probab=90.61 E-value=0.27 Score=40.37 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK~~~ 50 (72)
-+||+.||.|||+|.+|-..+
T Consensus 17 ikaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999998765
No 15
>PTZ00014 myosin-A; Provisional
Probab=89.53 E-value=0.42 Score=40.50 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
...++.||++||||+.|+.|...
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~ 799 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKN 799 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999853
No 16
>KOG0164|consensus
Probab=88.46 E-value=0.35 Score=41.64 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcc
Q psy14982 29 TEKAATKIQAVFRGHKTRKDIEETMKT 55 (72)
Q Consensus 29 ~~~AAtkIQA~fRGh~~RK~~~~~~k~ 55 (72)
.-.-+|.||++|||++.|.+|+. ||.
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~r-mka 720 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRR-MKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45789999999999999999995 654
No 17
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=87.53 E-value=0.49 Score=42.65 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy14982 24 LEDPETEKAATKIQAVFRGHKTRKDIEETMK 54 (72)
Q Consensus 24 vr~~~~~~AAtkIQA~fRGh~~RK~~~~~~k 54 (72)
.|+..++..++.||++|||+..|++|...++
T Consensus 739 ~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k 769 (1463)
T COG5022 739 MRDAKLDNIATRIQRAIRGRYLRRRYLQALK 769 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999986544
No 18
>KOG2128|consensus
Probab=85.97 E-value=0.92 Score=40.83 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHHhhhhhcccccC--C----HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 11 AATKIQAVFRDIDLE--D----PETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 11 AAvkIQa~fRg~~vr--~----~~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.-+.||+..||+.+- + .....-++++|+++|||++|+.+..
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~ 613 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSR 613 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence 456788888887631 1 3456889999999999999999875
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=80.85 E-value=2.3 Score=23.25 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q psy14982 32 AATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK~~~ 50 (72)
|+..||-.||-++.|+.-.
T Consensus 11 At~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998743
No 20
>KOG0162|consensus
Probab=80.38 E-value=1.6 Score=38.01 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 25 EDPETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 25 r~~~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
|++.-+-.|.+||.+||-|..|++|..
T Consensus 691 Rer~~d~~A~~IQkAWRrfv~rrky~k 717 (1106)
T KOG0162|consen 691 RERKWDGMARRIQKAWRRFVARRKYEK 717 (1106)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344557899999999999999999984
No 21
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=79.74 E-value=1.8 Score=39.23 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhhhhhcccccCC---------------------------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 5 DPETEKAATKIQAVFRDIDLED---------------------------PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 5 ~~~~~~AAvkIQa~fRg~~vr~---------------------------~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
+......++.||+++||.-+|+ .---.++.+||..+|.+..|+.++..
T Consensus 741 d~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~ 815 (1463)
T COG5022 741 DAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY 815 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHH
Confidence 3567889999999999742222 12358999999999999999999854
No 22
>KOG0377|consensus
Probab=75.79 E-value=1.3 Score=36.63 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhcccccCCHHHHHHHH
Q psy14982 9 EKAATKIQAVFRDIDLEDPETEKAAT 34 (72)
Q Consensus 9 ~~AAvkIQa~fRg~~vr~~~~~~AAt 34 (72)
-+||..||.|||+|..|-....+++-
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr~tw 42 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRRCTW 42 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 36899999999999777644444433
No 23
>KOG4427|consensus
Probab=65.92 E-value=3.4 Score=36.15 Aligned_cols=33 Identities=36% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHhhhH
Q psy14982 7 ETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGH 43 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~~~~~~AAtkIQA~fRGh 43 (72)
.-++||.+||+..|||-+|+ +++..||--|+..
T Consensus 28 rr~~aa~~iq~~lrsyl~Rk----k~~~~I~~e~d~~ 60 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRK----KAQIEIQEEFDNL 60 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 34679999999999998886 5677788666643
No 24
>KOG0163|consensus
Probab=64.25 E-value=8.2 Score=34.06 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 28 ETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 28 ~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
....+.+++|+.-|||++|++++-
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhch
Confidence 467899999999999999999864
No 25
>KOG1419|consensus
Probab=57.35 E-value=7 Score=32.87 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRK 47 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK 47 (72)
+-||..||++||-|.+-.
T Consensus 340 ~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYAAEN 357 (654)
T ss_pred chHHHHHHHHHHHHhccc
Confidence 479999999999998644
No 26
>PF15157 IQ-like: IQ-like
Probab=50.91 E-value=17 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q psy14982 29 TEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 29 ~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
++.-+..||++||-|..|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 5677888999999999998754
No 27
>KOG0161|consensus
Probab=50.27 E-value=20 Score=33.75 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
..+..-.+.+||.+|||..|+.|..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~k 794 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKK 794 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777776653
No 28
>KOG0161|consensus
Probab=42.82 E-value=22 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhcccccCC-----HHHHHHHHHHHHHhhhHHHHHH
Q psy14982 6 PETEKAATKIQAVFRDIDLED-----PETEKAATKIQAVFRGHKTRKD 48 (72)
Q Consensus 6 ~~~~~AAvkIQa~fRg~~vr~-----~~~~~AAtkIQA~fRGh~~RK~ 48 (72)
..+..--+.+|+.+|||..+. .....|+..||...|.|...+.
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566788999999998776 3457899999999999976653
No 29
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=32.94 E-value=30 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhccCchhhhhhHhhh
Q psy14982 42 GHKTRKDIEETMKTGDDETQNFEQEF 67 (72)
Q Consensus 42 Gh~~RK~~~~~~k~~~~~~~~~~~~~ 67 (72)
|..+|++++..++.-..+.+...++.
T Consensus 101 GkkaRrRqkk~~k~l~~~~e~~~~~~ 126 (140)
T PF07543_consen 101 GKKARRRQKKQQKKLEEAEEQRREEQ 126 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999988887777777766663
No 30
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=26.70 E-value=29 Score=19.28 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHhhh
Q psy14982 4 EDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRG 42 (72)
Q Consensus 4 ~~~~~~~AAvkIQa~fRg~~vr~~~~~~AAtkIQA~fRG 42 (72)
+...+..++..++.....+.-.-..+...+..+++.|.|
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G 43 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQG 43 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Confidence 334444555555444433322223344444444555554
No 31
>PHA00422 hypothetical protein
Probab=24.19 E-value=99 Score=19.16 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhcccccCCHHHHHHHHHHHHHhhhHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTR 46 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~~~~~~AAtkIQA~fRGh~~R 46 (72)
...++..+|+.| ....|+..--++=|||.+-
T Consensus 11 ik~~pk~fQSn~--------vR~naalvaeaAsrGhiSc 41 (69)
T PHA00422 11 IKSCPKTFQSNY--------VRNNASLVAEAASRGHISC 41 (69)
T ss_pred HHhCcHHHHHHH--------HhhHHHHHHHHHhcCChhh
Confidence 345667788887 2347888888889999764
Done!