Query psy14982
Match_columns 72
No_of_seqs 101 out of 232
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:29:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.3 9.3E-13 3.2E-17 75.4 3.4 46 7-52 3-50 (58)
2 1n2d_C IQ2 and IQ3 motifs from 99.3 2.4E-12 8E-17 71.2 2.8 41 9-49 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.3 4.1E-07 1.4E-11 75.7 3.6 42 9-50 816-859 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.2 9.2E-07 3.1E-11 73.6 3.2 22 30-51 816-837 (1080)
5 2kxw_B Sodium channel protein 98.1 3.1E-06 1.1E-10 43.2 3.0 22 27-48 3-24 (27)
6 2ix7_C Myosin-5A; contractIle 98.0 5.1E-06 1.8E-10 47.0 3.9 24 28-51 3-26 (58)
7 2l53_B CAM, voltage-gated sodi 98.0 3.9E-06 1.3E-10 44.2 2.3 24 27-50 3-26 (31)
8 1wdc_A Scallop myosin; calcium 97.8 1.1E-05 3.9E-10 46.6 3.0 45 5-49 2-51 (64)
9 1n2d_C IQ2 and IQ3 motifs from 97.7 2.5E-05 8.5E-10 42.5 3.0 23 30-52 3-25 (48)
10 1kk8_A Myosin heavy chain, str 97.7 1.3E-05 4.4E-10 65.6 1.9 45 6-50 776-825 (837)
11 2bl0_A Major plasmodial myosin 97.6 3.3E-05 1.1E-09 44.5 2.1 41 8-48 3-48 (63)
12 1i84_S Smooth muscle myosin he 97.1 0.00015 5E-09 60.2 1.3 42 8-49 791-837 (1184)
13 1wdc_A Scallop myosin; calcium 96.9 0.0013 4.4E-08 37.7 4.3 28 25-52 1-28 (64)
14 2kxw_B Sodium channel protein 96.8 0.00019 6.4E-09 36.5 0.1 20 6-25 3-22 (27)
15 2l53_B CAM, voltage-gated sodi 96.6 0.00035 1.2E-08 36.6 -0.0 20 6-25 3-22 (31)
16 3gn4_A Myosin-VI; unconvention 96.3 0.0032 1.1E-07 42.8 3.3 24 28-51 43-66 (148)
17 2bl0_A Major plasmodial myosin 96.2 0.0043 1.5E-07 35.5 3.2 24 29-52 3-26 (63)
18 1w7j_A Myosin VA; motor protei 96.2 0.0025 8.4E-08 52.0 2.7 26 27-52 765-790 (795)
19 4dck_A Sodium channel protein 95.2 0.02 6.7E-07 39.3 3.8 25 27-51 127-151 (168)
20 1kk8_A Myosin heavy chain, str 95.0 0.012 4E-07 48.3 2.6 26 27-52 776-801 (837)
21 1i84_S Smooth muscle myosin he 91.9 0.058 2E-06 44.9 1.8 24 28-51 790-813 (1184)
22 4anj_A Unconventional myosin-V 85.4 0.56 1.9E-05 39.5 3.2 42 8-50 774-817 (1052)
23 4dck_A Sodium channel protein 78.7 0.54 1.8E-05 32.1 0.6 22 6-27 127-148 (168)
24 3dvk_B Voltage-dependent R-typ 75.4 1.6 5.5E-05 21.2 1.6 16 32-47 8-23 (23)
25 2f3y_B Voltage-dependent L-typ 71.6 2.9 0.0001 20.8 2.1 19 32-50 4-22 (26)
26 3bxl_B CAM, voltage-dependent 71.5 3.3 0.00011 20.6 2.3 17 32-48 4-20 (26)
27 2be6_D Voltage-dependent L-typ 66.0 5.6 0.00019 21.2 2.6 18 32-49 13-30 (37)
28 4anj_A Unconventional myosin-V 61.4 3.7 0.00013 34.6 2.0 28 28-57 773-800 (1052)
29 2ycu_A Non muscle myosin 2C, a 57.5 12 0.0004 31.1 4.3 42 10-51 765-808 (995)
30 3dve_B Voltage-dependent N-typ 54.8 3 0.0001 20.2 0.3 16 32-47 7-22 (23)
31 1w7j_A Myosin VA; motor protei 48.0 3.1 0.00011 33.9 -0.5 21 7-27 766-786 (795)
32 3g43_E Voltage-dependent L-typ 46.5 9.2 0.00031 23.4 1.6 18 31-48 64-81 (81)
33 1wdg_A E2 glycoprotein; MHV, c 22.2 70 0.0024 19.9 2.6 28 9-43 10-37 (94)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.32 E-value=9.3e-13 Score=75.45 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 7 ETEKAATKIQAVFRDIDLEDP--ETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~~--~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
....||++||+.||||..++. .+..||+.||+.||||.+|+.|...
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999988884 5678999999999999999999853
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.4e-12 Score=71.19 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhcccccCCH----HHHHHHHHHHHHhhhHHHHHHH
Q psy14982 9 EKAATKIQAVFRDIDLEDP----ETEKAATKIQAVFRGHKTRKDI 49 (72)
Q Consensus 9 ~~AAvkIQa~fRg~~vr~~----~~~~AAtkIQA~fRGh~~RK~~ 49 (72)
..+++.||+.+||+..+.. ..+.||++||+.||||..|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4689999999999988873 2345999999999999999986
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.27 E-value=4.1e-07 Score=75.68 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982 9 EKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 9 ~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
..||++||++||||..|+ ..+..+++.||++||||.+|+.|+
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665554 234455556666666666655555
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.15 E-value=9.2e-07 Score=73.58 Aligned_cols=22 Identities=32% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
..||++||+.||||+.|+.|..
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHH
Confidence 5677777777777777777764
No 5
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=98.06 E-value=3.1e-06 Score=43.23 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKD 48 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~ 48 (72)
+.++.||++||.+||+|+.|..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999998754
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.04 E-value=5.1e-06 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 28 ETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 28 ~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.++.||+.||+.||||..|+.|..
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~ 26 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLC 26 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999995
No 7
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=3.9e-06 Score=44.17 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
+.++.+|+.||.+||+|+.|..++
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999999987643
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.84 E-value=1.1e-05 Score=46.57 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHHH
Q psy14982 5 DPETEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKDI 49 (72)
Q Consensus 5 ~~~~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~~ 49 (72)
|.......+.||+..||+-.|.. ....|+..||..+|+|..++..
T Consensus 2 d~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 2 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45667889999999999988763 2366888999999999998753
No 9
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.72 E-value=2.5e-05 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 30 EKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 30 ~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
..+++.||+.||||..|+.+...
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~ 25 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDE 25 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999853
No 10
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.67 E-value=1.3e-05 Score=65.56 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHHHH
Q psy14982 6 PETEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 6 ~~~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
.....++++||+++|||..|+. ....|++.||+.||||..|+.+.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 3456789999999999988873 23679999999999999998764
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.56 E-value=3.3e-05 Score=44.53 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKD 48 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~ 48 (72)
.....+.||+..||+-.|.. ....|+..||..+|+|..++.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45678999999999988763 236788899999999999875
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.06 E-value=0.00015 Score=60.23 Aligned_cols=42 Identities=14% Similarity=-0.043 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhcccccCCHH-----HHHHHHHHHHHhhhHHHHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLEDPE-----TEKAATKIQAVFRGHKTRKDI 49 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~~~-----~~~AAtkIQA~fRGh~~RK~~ 49 (72)
...+++.||+++|||..|+.. ...|++.||+.||||..|+.+
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456899999999999888732 357999999999999999753
No 13
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.94 E-value=0.0013 Score=37.74 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 25 EDPETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 25 r~~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
|+......+|.|||..|||..|+.|...
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~ 28 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKL 28 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999953
No 14
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.82 E-value=0.00019 Score=36.51 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhcccccC
Q psy14982 6 PETEKAATKIQAVFRDIDLE 25 (72)
Q Consensus 6 ~~~~~AAvkIQa~fRg~~vr 25 (72)
+.++.||++||.+||+|..+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999998543
No 15
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.56 E-value=0.00035 Score=36.57 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhhcccccC
Q psy14982 6 PETEKAATKIQAVFRDIDLE 25 (72)
Q Consensus 6 ~~~~~AAvkIQa~fRg~~vr 25 (72)
+.++-+|++||.+||+|..+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~r 22 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQ 22 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999998554
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.26 E-value=0.0032 Score=42.75 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 28 ETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 28 ~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.-..|+++||+..|||++|++++-
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457999999999999999999874
No 17
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.22 E-value=0.0043 Score=35.47 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 29 TEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 29 ~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
....+|.|||..|||..|+.|...
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~ 26 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQA 26 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999953
No 18
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=96.17 E-value=0.0025 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
..++.+|+.||++||||+.|++|+..
T Consensus 765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~ 790 (795)
T 1w7j_A 765 DKLRAACIRIQKTIRGWLMRKKYMRM 790 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999953
No 19
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=95.16 E-value=0.02 Score=39.34 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.....||+.||.+||.|+.|+.++.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4578899999999999999988874
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=94.97 E-value=0.012 Score=48.28 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982 27 PETEKAATKIQAVFRGHKTRKDIEET 52 (72)
Q Consensus 27 ~~~~~AAtkIQA~fRGh~~RK~~~~~ 52 (72)
..+..+|+.||+++|||+.|++|+..
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~ 801 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKL 801 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999853
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.95 E-value=0.058 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 28 ETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 28 ~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.+..+++.||++||||..|+.|..
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k 813 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAK 813 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999985
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=85.37 E-value=0.56 Score=39.48 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982 8 TEKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 8 ~~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~ 50 (72)
...+++.||. +|||..|+ ..+..+|+.||..+|+++.|+...
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456666664 68887766 456778888888888887776543
No 23
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=78.73 E-value=0.54 Score=32.11 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhcccccCCH
Q psy14982 6 PETEKAATKIQAVFRDIDLEDP 27 (72)
Q Consensus 6 ~~~~~AAvkIQa~fRg~~vr~~ 27 (72)
+.+..||..||.+||.|..++.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~ 148 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRS 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999976543
No 24
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=75.36 E-value=1.6 Score=21.17 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhHHHHH...
Q psy14982 32 AATKIQAVFRGHKTRK... 47 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK... 47 (72)
|+..||-.||-++.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 7788999999887763
No 25
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=71.59 E-value=2.9 Score=20.79 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q psy14982 32 AATKIQAVFRGHKTRKDIE 50 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK~~~ 50 (72)
|--.||-.||-++.|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 4457999999999988643
No 26
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=71.54 E-value=3.3 Score=20.59 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhHHHHHH
Q psy14982 32 AATKIQAVFRGHKTRKD 48 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK~ 48 (72)
||..|+-.||-++.|+.
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 78999999999999886
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=65.99 E-value=5.6 Score=21.21 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHH
Q psy14982 32 AATKIQAVFRGHKTRKDI 49 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK~~ 49 (72)
|--.||-.||-++.|+.-
T Consensus 13 atfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 13 ATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566899999999999874
No 28
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=61.40 E-value=3.7 Score=34.61 Aligned_cols=28 Identities=4% Similarity=0.013 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCc
Q psy14982 28 ETEKAATKIQAVFRGHKTRKDIEETMKTGD 57 (72)
Q Consensus 28 ~~~~AAtkIQA~fRGh~~RK~~~~~~k~~~ 57 (72)
..+.+|+.||. +|||..|++|+. |+...
T Consensus 773 ~~~~~~~~iq~-~r~~l~r~~~~k-~~~~a 800 (1052)
T 4anj_A 773 DPDHLAELVKR-VNHWLICSRWKK-VQWCS 800 (1052)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHH-HHHHH
Confidence 35788888885 799999999984 55443
No 29
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=57.46 E-value=12 Score=31.14 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHHHhhhhhcccccC--CHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982 10 KAATKIQAVFRDIDLE--DPETEKAATKIQAVFRGHKTRKDIEE 51 (72)
Q Consensus 10 ~AAvkIQa~fRg~~vr--~~~~~~AAtkIQA~fRGh~~RK~~~~ 51 (72)
.-|..++.|+|+...+ ......+++.||+.+|||+.++....
T Consensus 765 ~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ek 808 (995)
T 2ycu_A 765 KRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 808 (995)
T ss_dssp HHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 3455688899886543 36678899999999999998887653
No 30
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=54.82 E-value=3 Score=20.16 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHH
Q psy14982 32 AATKIQAVFRGHKTRK 47 (72)
Q Consensus 32 AAtkIQA~fRGh~~RK 47 (72)
|+..||-.||-++.|+
T Consensus 7 AallI~d~~r~~k~~~ 22 (23)
T 3dve_B 7 AALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6778888888766553
No 31
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=47.96 E-value=3.1 Score=33.93 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhhcccccCCH
Q psy14982 7 ETEKAATKIQAVFRDIDLEDP 27 (72)
Q Consensus 7 ~~~~AAvkIQa~fRg~~vr~~ 27 (72)
....+++.||+++|||..|+.
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~ 786 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKK 786 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999987764
No 32
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=46.47 E-value=9.2 Score=23.43 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhHHHHHH
Q psy14982 31 KAATKIQAVFRGHKTRKD 48 (72)
Q Consensus 31 ~AAtkIQA~fRGh~~RK~ 48 (72)
=|+..||-.||-|+.|++
T Consensus 64 YA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 64 YATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 389999999999998874
No 33
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=22.18 E-value=70 Score=19.94 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHHHHHhhhhhcccccCCHHHHHHHHHHHHHhhhH
Q psy14982 9 EKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGH 43 (72)
Q Consensus 9 ~~AAvkIQa~fRg~~vr~~~~~~AAtkIQA~fRGh 43 (72)
++|-.-||.+|+.. ..|..|||...-.+
T Consensus 10 NkAignIq~aF~av-------n~AL~KIQdVVN~Q 37 (94)
T 1wdg_A 10 NNALGAIQDGFDAT-------NSALGKIQSVVNAN 37 (94)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 46677788888754 57888888776443
Done!