RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14982
(72 letters)
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ
motif, acetylation; 2.5A {Mus musculus}
Length = 58
Score = 35.2 bits (82), Expect = 1e-04
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 16/56 (28%)
Query: 9 EKAATKIQAVFR---------DIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKT 55
A +IQ R + ++AA +Q RG++ R + +T
Sbjct: 5 RAACIRIQKTIRGWLLRKRYLCM-------QRAAITVQRYVRGYQARCYAKFLRRT 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.013
Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 1 IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDET 60
+D E E + I +VF D +++ + + +++ ++++I+ + + D +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIMSKDAVS 62
Query: 61 Q 61
Sbjct: 63 G 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.029
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 15/52 (28%)
Query: 1 IDLEDPETEKAATKI-Q--------AVFRDIDLEDPETEKAATKIQAVFRGH 43
+ +AT+ Q A F D+ K A F GH
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDL------KSKGLIPADATFAGH 1762
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 0.037
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 10 KAATKIQAVFRDI----DLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQ 65
+AA IQ R +AA IQ R + RK + M+ Q +
Sbjct: 792 RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQC-MRDATIALQALLR 850
Query: 66 EFSADDK 72
+ +K
Sbjct: 851 GYLVRNK 857
Score = 28.2 bits (63), Expect = 0.20
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 4 EDPETEKAATKIQAVFRD----IDLEDPETEKAATKIQAVFRGHKTRKDIEETMK 54
A +QA+ R + E + IQ RG R T+K
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888
Score = 27.8 bits (62), Expect = 0.24
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 9 EKAATKIQAVFRDIDL--EDPETEKAATKIQAVFRGHKTRKDIEETMKT 55
+AA IQ R + A +QA+ RG+ R + ++
Sbjct: 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Score = 27.8 bits (62), Expect = 0.25
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 9 EKAATKIQAVFR--DIDLEDPETEKAATKIQAVFRGHKTRKDIEE 51
A +IQ R + + +AA IQ RGH+ R
Sbjct: 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF 812
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 29.5 bits (67), Expect = 0.066
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 31 KAATKIQAVFRGHKTRK 47
A +IQ RG RK
Sbjct: 769 AACIRIQKTIRGWLMRK 785
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 29.0 bits (65), Expect = 0.082
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 3 LEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRG-HKTRK 47
++DPE + +IQA + T +AA I+A H+ ++
Sbjct: 365 VDDPEVARRLRRIQAEMAQ----EGGTRRAADLIEAELPARHERQE 406
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 28.8 bits (65), Expect = 0.12
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 10 KAATKIQAVFRD-----IDLEDPETEKAATKIQAVFRGHKTRKD 48
K + QA R + + + IQ R ++
Sbjct: 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 27.5 bits (61), Expect = 0.27
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 3 LEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRK 47
L+DP A +++ +P + + + G + +
Sbjct: 401 LDDPAHRAGAARMRDDML----AEPSPAEVVGICEELAAGRREPR 441
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 25.8 bits (57), Expect = 0.44
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 34 TKIQAVFRGHKTRKDIEETMK 54
+QA RG RK + +
Sbjct: 8 KVVQAAARGWVERKHFRQARE 28
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 26.2 bits (58), Expect = 0.78
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 3 LEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGH 43
DP + ++ R+ AA ++ +
Sbjct: 387 ASDPGVAERLAAVRQEIRE----AGGARAAADILEGILAEA 423
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 26.4 bits (57), Expect = 0.86
Identities = 3/39 (7%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 6 PETE-KAATKIQAVFRDIDL--EDPETEKAATKIQAVFR 41
P + + + R ++L ++ + + +
Sbjct: 15 PHRTSRESPPMDQSSRYVNLALKEEDLIAGGEHVLCAYI 53
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide
complex, myosin light chain, cell cycle; 2.00A
{Saccharomyces cerevisiae}
Length = 48
Score = 24.7 bits (53), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 32 AATKIQAVFRGHKTRKDI 49
AT +QA +RGH R ++
Sbjct: 30 CATLLQAAYRGHSIRANV 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.0 bits (57), Expect = 1.1
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 30 EKAATKIQAVFRGHKTRKDIEETMK 54
QA RG+ RK + +
Sbjct: 792 TDVIIAFQAQCRGYLARKAFAKRQQ 816
Score = 24.4 bits (53), Expect = 3.7
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 5/43 (11%)
Query: 9 EKAATKIQAVFRD-----IDLEDPETEKAATKIQAVFRGHKTR 46
QA R + + ++ IQ R
Sbjct: 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV 834
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 25.0 bits (55), Expect = 2.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 31 KAATKIQAVFRGHKTRKDIEETMK 54
TK + R ++ + I +
Sbjct: 764 SEQTKSDYLKRANELVQWINDKQA 787
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel,
lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP:
c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A*
1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Length = 554
Score = 24.9 bits (54), Expect = 2.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 10 KAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTR----KDIEETMKTGDD 58
KAA +QAVF + L E +++A H ++ ++I E +K +
Sbjct: 414 KAARALQAVFAGMGLPPITDE----EVEAATYAHGSKDMPERNIVEDIKFAQE 462
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 24.6 bits (53), Expect = 2.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 30 EKAATKIQAVFRGHKTRKDIEET 52
E +A IQ FR H ++ ++
Sbjct: 130 EVSAMVIQRAFRRHLLQRSLKHA 152
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 23.8 bits (52), Expect = 6.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 31 KAATKIQAVFRGHKTRKDIEE 51
+ +Q+ HK K E+
Sbjct: 788 DSIESVQSFMNAHKEYKKTEK 808
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.126 0.333
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,064,423
Number of extensions: 49802
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 37
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.1 bits)