RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14982
         (72 letters)



>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 32.4 bits (73), Expect = 0.002
 Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 5/44 (11%)

Query: 10  KAATKIQAVFR-----DIDLEDPETEKAATKIQAVFRGHKTRKD 48
           +  T  QA  R            E  ++   IQ   R     K 
Sbjct: 736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH 779


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 30.1 bits (67), Expect = 0.015
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 31  KAATKIQAVFRGHKTRK 47
            A  +IQ   RG   RK
Sbjct: 707 AACIRIQKTIRGWLMRK 723


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 28.9 bits (64), Expect = 0.034
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 30  EKAATKIQAVFRGHKTRK 47
            K  +  QA  RG+  RK
Sbjct: 731 SKIISMFQAHIRGYLIRK 748



 Score = 27.0 bits (59), Expect = 0.18
 Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 9   EKAATKIQAVFRDID-----LEDPETEKAATKIQAVFRGHKTRKD 48
            K  +  QA  R         +  +     + IQ   R     ++
Sbjct: 731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 775


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 27.5 bits (61), Expect = 0.12
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 9   EKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTR----KDIEETMKTGDD 58
            KAA  +QAVF  + L     E    +++A    H ++    ++I E +K   +
Sbjct: 413 NKAARALQAVFAGMGLPPITDE----EVEAATYAHGSKDMPERNIVEDIKFAQE 462


>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
          thermophilus [TaxId: 274]}
          Length = 248

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 5  DPETEKAATKIQAVFRDIDLEDPET-EKAATKIQAVF 40
           PE ++ A  I   F  +DLED     +   +     
Sbjct: 38 RPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYAL 74


>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II,
          domains 3 and 4 {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 181

 Score = 22.5 bits (48), Expect = 5.9
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 22 IDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQ 65
          +D+   E    A K++A        K+++  +     +   +  
Sbjct: 1  VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNL 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.126    0.333 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 246,834
Number of extensions: 8622
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 11
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.4 bits)