BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1500
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 11 LTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGL 70
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 114 VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGF 173
Query: 71 TVALGHLAA 79
+VA+GHL A
Sbjct: 174 SVAIGHLFA 182
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 11 LTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGL 70
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 114 VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGF 173
Query: 71 TVALGHLAA 79
+VA+GHL A
Sbjct: 174 SVAIGHLFA 182
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 11 LTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGL 70
+TP G LG+TT++ +LT G+ CD + ALAIG
Sbjct: 153 VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGF 212
Query: 71 TVALGHLAA 79
+VA+GHL A
Sbjct: 213 SVAIGHLFA 221
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 11 LTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIGL 70
+TP G LG+T ++ +LT G+ CD + ALAIG
Sbjct: 105 VTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGF 164
Query: 71 TVALGHLAA 79
+VA+GHL A
Sbjct: 165 SVAIGHLFA 173
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 69
++TP +GNL L TL+ ++ Q D + ALA+G
Sbjct: 106 SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG 165
Query: 70 LTVALGHL 77
++ LGHL
Sbjct: 166 FSLTLGHL 173
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 69
++TP +GNL L TL+ ++ Q D + ALA+G
Sbjct: 106 SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG 165
Query: 70 LTVALGHL 77
++ LGHL
Sbjct: 166 FSLTLGHL 173
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAIG 69
++TP +GNL L TL+ ++ Q D + ALA+G
Sbjct: 102 SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG 161
Query: 70 LTVALGHL 77
++ LGHL
Sbjct: 162 FSLTLGHL 169
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 9 QALTPADFQGNLGLTTLNKHLTPVQGMXXXXXXXXXXXXXXXXXCDGNKPHAKAPAALAI 68
++TP +GNL L TL+ ++ Q D + ALA+
Sbjct: 99 YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 158
Query: 69 GLTVALGHL 77
G ++ LGHL
Sbjct: 159 GFSLTLGHL 167
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 54 DGNKPHAKAPAALAIGLTVALGHLAAF 80
D + A LAIGL+VALGHL A
Sbjct: 158 DRRRRDLGGSAPLAIGLSVALGHLLAI 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,793,539
Number of Sequences: 62578
Number of extensions: 38546
Number of successful extensions: 83
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)