Query psy1500
Match_columns 80
No_of_seqs 116 out of 1027
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:54:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223|consensus 99.4 1.5E-12 3.2E-17 88.1 6.2 73 5-80 104-178 (238)
2 PTZ00016 aquaglyceroporin; Pro 99.0 1.2E-09 2.6E-14 75.9 6.2 59 21-79 173-231 (294)
3 KOG0224|consensus 98.9 2.9E-09 6.2E-14 74.1 6.0 57 22-78 158-214 (316)
4 PF00230 MIP: Major intrinsic 98.9 5.7E-09 1.2E-13 69.3 6.3 74 6-79 108-183 (227)
5 COG0580 GlpF Glycerol uptake f 98.9 5.7E-09 1.2E-13 70.9 6.2 60 19-79 122-182 (241)
6 PLN00027 aquaporin TIP; Provis 98.7 5.2E-08 1.1E-12 66.4 6.8 59 21-79 131-190 (252)
7 PLN00167 aquaporin TIP5; Provi 98.7 7.1E-08 1.5E-12 66.0 6.7 54 26-79 138-191 (256)
8 PLN00184 aquaporin NIP1; Provi 98.7 1.1E-07 2.3E-12 66.4 7.1 54 25-79 171-224 (296)
9 PLN00166 aquaporin TIP2; Provi 98.6 1.2E-07 2.7E-12 64.6 6.8 55 25-79 133-188 (250)
10 PLN00026 aquaporin NIP; Provi 98.5 2.4E-07 5.3E-12 64.6 6.1 69 6-79 165-233 (298)
11 PRK05420 aquaporin Z; Provisio 98.5 2.3E-07 5E-12 62.5 5.7 50 28-79 128-177 (231)
12 PLN00182 putative aquaporin NI 98.5 3.7E-07 8E-12 63.3 6.8 69 7-79 137-205 (283)
13 TIGR00861 MIP MIP family chann 98.4 2.1E-06 4.5E-11 57.0 7.7 73 7-79 96-170 (216)
14 cd00333 MIP Major intrinsic pr 98.2 4.3E-06 9.3E-11 55.9 6.3 57 23-79 121-178 (228)
15 PLN00183 putative aquaporin NI 98.2 4.2E-06 9.2E-11 57.8 5.9 54 25-79 154-207 (274)
16 PLN00026 aquaporin NIP; Provi 97.3 0.00084 1.8E-08 47.1 5.8 56 24-79 63-122 (298)
17 PLN00183 putative aquaporin NI 97.1 0.0011 2.4E-08 46.0 5.0 52 27-78 40-95 (274)
18 PLN00184 aquaporin NIP1; Provi 97.1 0.0014 2.9E-08 45.9 5.1 50 29-78 51-104 (296)
19 PLN00027 aquaporin TIP; Provis 96.9 0.0026 5.6E-08 43.4 5.2 50 30-79 18-76 (252)
20 PLN00167 aquaporin TIP5; Provi 96.5 0.0053 1.1E-07 42.1 4.5 51 29-79 19-78 (256)
21 PLN00166 aquaporin TIP2; Provi 96.4 0.0077 1.7E-07 41.2 4.9 51 29-79 15-74 (250)
22 PLN00182 putative aquaporin NI 96.1 0.014 3.1E-07 40.6 4.7 51 28-78 38-92 (283)
23 PTZ00016 aquaglyceroporin; Pro 95.9 0.021 4.6E-07 39.9 4.9 49 30-78 48-100 (294)
24 PRK05420 aquaporin Z; Provisio 95.4 0.052 1.1E-06 36.6 5.3 47 32-78 2-53 (231)
25 cd00333 MIP Major intrinsic pr 95.2 0.039 8.4E-07 36.9 4.1 46 33-78 1-51 (228)
26 KOG0223|consensus 88.2 1.5 3.2E-05 30.0 4.9 49 29-77 8-60 (238)
27 TIGR00861 MIP MIP family chann 87.5 0.63 1.4E-05 30.8 2.7 42 37-78 1-51 (216)
28 PF00230 MIP: Major intrinsic 82.6 1.6 3.4E-05 28.8 2.9 23 30-52 6-28 (227)
29 KOG0224|consensus 65.6 11 0.00025 26.8 3.7 50 30-79 30-84 (316)
30 COG0580 GlpF Glycerol uptake f 52.0 19 0.00041 24.7 2.9 48 31-78 4-58 (241)
31 PF01299 Lamp: Lysosome-associ 38.3 25 0.00054 24.5 1.9 18 61-78 270-287 (306)
32 PF13955 Fst_toxin: Toxin Fst, 31.7 53 0.0011 14.1 1.8 13 63-75 5-17 (21)
33 PF15176 LRR19-TM: Leucine-ric 23.2 1.4E+02 0.003 18.0 3.0 17 61-77 14-30 (102)
34 PF07213 DAP10: DAP10 membrane 22.1 1.7E+02 0.0037 16.8 3.7 24 35-58 40-63 (79)
35 PRK10591 hypothetical protein; 20.5 2E+02 0.0044 17.0 4.5 22 33-54 10-31 (92)
No 1
>KOG0223|consensus
Probab=99.37 E-value=1.5e-12 Score=88.14 Aligned_cols=73 Identities=38% Similarity=0.523 Sum_probs=63.7
Q ss_pred hhhhhhccccc-ccCccceecCCCCCChhhHHHHHHHHHHHHHHhhhe-eecCCCCCCCCchHHHHHHHHHHHHhhcC
Q psy1500 5 FSNSQALTPAD-FQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG-VCDGNKPHAKAPAALAIGLTVALGHLAAF 80 (80)
Q Consensus 5 ~~ll~~~~p~~-~~~~~g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~-~~~~~~~~~~~~apl~IG~~v~~~~l~~~ 80 (80)
.+++|.++|++ .+.+.+.+.++++.+.+|+++.|+++||.|++++++ .+|+|++ .++|++||+++.+++++++
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---~~a~l~IG~~v~~~~l~~g 178 (238)
T KOG0223|consen 104 AALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS---ELAPLAIGFSVGLNILAAG 178 (238)
T ss_pred HHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc---ccHHHHHHHHHHHHHHeec
Confidence 46889999984 345678888999999999999999999999999999 5777765 7999999999999999864
No 2
>PTZ00016 aquaglyceroporin; Provisional
Probab=98.99 E-value=1.2e-09 Score=75.91 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=49.4
Q ss_pred ceecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 21 GLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 21 g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
+.+.+.|+.+.++++..|+++|++|++++++++|+|+....+.+|++||+++.+++++.
T Consensus 173 ~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~d~~~~~~~~~~pl~IGl~v~~i~~~~ 231 (294)
T PTZ00016 173 GVFATYPREGNFYAIFSELILTAILLLVILAITDPNNCPAFNYLPVAVGLLVFVIGISF 231 (294)
T ss_pred ceeeCCCCccHHHHHHHHHHHHHHHHHHHHHhccCccCCCcCcccHHHHHHHHHHHHhc
Confidence 34555667888999999999999999999999998775445688999999998887753
No 3
>KOG0224|consensus
Probab=98.92 E-value=2.9e-09 Score=74.06 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=52.6
Q ss_pred eecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhh
Q psy1500 22 LTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLA 78 (80)
Q Consensus 22 ~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~ 78 (80)
.|+|.|++|.+++|+.|+++|.+|+.+++++.|+||..++++.|+.+|+.+.++.++
T Consensus 158 aTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~D~rN~~p~g~~p~~iG~lv~~Ig~s 214 (316)
T KOG0224|consen 158 ATYPAPHLSLWNGFFDQFIGTAMLVLCLFAITDKRNPIPTGLHPLVIGILVVAIGMS 214 (316)
T ss_pred eecCchHhhhhHHHHHHHHHHHHHHhheeEEecCCCCCCcchhHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999767899999999999998764
No 4
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.89 E-value=5.7e-09 Score=69.34 Aligned_cols=74 Identities=35% Similarity=0.320 Sum_probs=58.3
Q ss_pred hhhhhccccc-ccCccceecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCC-CCchHHHHHHHHHHHHhhc
Q psy1500 6 SNSQALTPAD-FQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHA-KAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 6 ~ll~~~~p~~-~~~~~g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~-~~~apl~IG~~v~~~~l~~ 79 (80)
.+++.+.++. .....+.+.+.++.+.++++..|+++|++|+++++.++|+|++.. +.+.|+.||+++..+.+.+
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~~~~~~p~~ig~~v~~~~~~~ 183 (227)
T PF00230_consen 108 LLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKFPLGPLAPLAIGLTVGALVLAG 183 (227)
T ss_dssp HHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSSTSSGGHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccccccccccceeEEEEEeeccccc
Confidence 3566777653 223455677888899999999999999999999999988776643 4578999999999887653
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=98.88 E-value=5.7e-09 Score=70.86 Aligned_cols=60 Identities=35% Similarity=0.335 Sum_probs=50.3
Q ss_pred ccceecCCCCC-ChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 19 NLGLTTLNKHL-TPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 19 ~~g~~~~~~~~-s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
..|.+++.|+. +..++++.|+++||+|++++++++|+++. ..+++|+.||+.+++++++.
T Consensus 122 ~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~-~~~~apl~iGllv~~i~~s~ 182 (241)
T COG0580 122 SLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA-NAGFAPLAIGLLVTAIGLSL 182 (241)
T ss_pred hccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc-cccchHHHHHHHHHHHHHHh
Confidence 46777777764 88999999999999999999998875554 35699999999999988753
No 6
>PLN00027 aquaporin TIP; Provisional
Probab=98.72 E-value=5.2e-08 Score=66.39 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=48.0
Q ss_pred ceecCCCCCChhhHHHHHHHHHHHHHHhhheee-cCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 21 GLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVC-DGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 21 g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~-~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
+.+.+.++++.+++++.|+++||+|+++++++. |+|+...+.++|+.||+++..+++++
T Consensus 131 ~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~ 190 (252)
T PLN00027 131 SAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAG 190 (252)
T ss_pred ccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhc
Confidence 445566788999999999999999999999875 55543334689999999999988764
No 7
>PLN00167 aquaporin TIP5; Provisional
Probab=98.69 E-value=7.1e-08 Score=65.95 Aligned_cols=54 Identities=30% Similarity=0.313 Sum_probs=45.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 26 NKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 26 ~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
.++.+.++++++|+++|++|++++++++|+|+...+..+|+.||+++..+++++
T Consensus 138 ~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~~~~~~pl~iGl~v~~~~~~~ 191 (256)
T PLN00167 138 AEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVAGANVLAA 191 (256)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHhc
Confidence 345677899999999999999999999887665445688999999999998764
No 8
>PLN00184 aquaporin NIP1; Provisional
Probab=98.66 E-value=1.1e-07 Score=66.36 Aligned_cols=54 Identities=35% Similarity=0.447 Sum_probs=44.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 25 LNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 25 ~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
+.|+.+.+++++.|+++||+|+++++++.++++. .+..+|++||++|.+++++.
T Consensus 171 t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~-~~~~~~l~IG~~v~~~~~~~ 224 (296)
T PLN00184 171 SSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRA-IGELAGLAIGSTVLLNVLIA 224 (296)
T ss_pred cCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcC-CCcchHHHHHHHHHHHHHHh
Confidence 3444688999999999999999999998655443 25689999999999998764
No 9
>PLN00166 aquaporin TIP2; Provisional
Probab=98.64 E-value=1.2e-07 Score=64.58 Aligned_cols=55 Identities=27% Similarity=0.423 Sum_probs=44.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCC-CCCchHHHHHHHHHHHHhhc
Q psy1500 25 LNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH-AKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 25 ~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~-~~~~apl~IG~~v~~~~l~~ 79 (80)
..++.+.++++..|+++||+|+++++++++++|+. .+.++|++||+++..+++.+
T Consensus 133 ~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~ 188 (250)
T PLN00166 133 VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAA 188 (250)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHcc
Confidence 44567889999999999999999999886554432 34689999999999998764
No 10
>PLN00026 aquaporin NIP; Provisional
Probab=98.54 E-value=2.4e-07 Score=64.63 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=50.3
Q ss_pred hhhhhcccccccCccceecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 6 SNSQALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 6 ~ll~~~~p~~~~~~~g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
.++|.++++... -+.+. |+++.+|+++.|+++|++|+++++++.++++. .+..+|+++|++|++.++++
T Consensus 165 ~~~~~~~~~~~~--~g~t~--p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~-~~~~~~l~iGl~V~~~~l~~ 233 (298)
T PLN00026 165 FALKGVFHPFMS--GGVTV--PSVSTGQAFALEFIITFNLLFVVTAVATDTRA-VGELAGIAVGATVMLNILVA 233 (298)
T ss_pred HHHHHHhccccc--Cceee--ecccHHHHHHHHHHHHHHHHHhheeeecCCCC-cCCccchHHHHHHHHHHHHh
Confidence 455666653221 13333 46789999999999999999999988654443 24578999999999998764
No 11
>PRK05420 aquaporin Z; Provisional
Probab=98.54 E-value=2.3e-07 Score=62.52 Aligned_cols=50 Identities=32% Similarity=0.460 Sum_probs=43.2
Q ss_pred CCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 28 HLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 28 ~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
..+.++++..|+++|++|++++++.+|+|+. .+.+|+.||+++..+++++
T Consensus 128 ~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~--~~~~p~~iGl~v~~~~~~~ 177 (231)
T PRK05420 128 GYSLLAALVCEVVLTAFFLLVILGATDKRAP--AGFAPIAIGLALTLIHLIS 177 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999887653 4689999999999988754
No 12
>PLN00182 putative aquaporin NIP4; Provisional
Probab=98.53 E-value=3.7e-07 Score=63.32 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=49.8
Q ss_pred hhhhcccccccCccceecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 7 NSQALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 7 ll~~~~p~~~~~~~g~~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
+++.+++... .+.+...|+.+.+++++.|+++|++|+++++++.++++. .+...|+++|+++++.+++.
T Consensus 137 ~~~~~~~~~~---~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~-~~~~~~l~iGl~V~~~~~~~ 205 (283)
T PLN00182 137 TLRLMFNVTP---EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA-VGELAGIAVGMTIILNVFVA 205 (283)
T ss_pred HHHHHhcccc---cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc-CCcchhHHHHHHHHHHHHHc
Confidence 4555554321 133445566788999999999999999999987544433 24578999999999988754
No 13
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=98.41 E-value=2.1e-06 Score=57.03 Aligned_cols=73 Identities=36% Similarity=0.371 Sum_probs=51.5
Q ss_pred hhhhcccccccCccce-ecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCC-CCchHHHHHHHHHHHHhhc
Q psy1500 7 NSQALTPADFQGNLGL-TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHA-KAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 7 ll~~~~p~~~~~~~g~-~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~-~~~apl~IG~~v~~~~l~~ 79 (80)
+.|.++++....+... ..+.++.+.+++++.|+++|++|+++++..+++|++.. ....|+.+|+++...++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~ 170 (216)
T TIGR00861 96 LLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIGLLVFLIHLSM 170 (216)
T ss_pred HHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHHHHHHHHHHhC
Confidence 4555555432112121 22344678899999999999999999999988765422 3379999999999988653
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=98.24 E-value=4.3e-06 Score=55.94 Aligned_cols=57 Identities=35% Similarity=0.384 Sum_probs=46.6
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHHhhheeecCCCC-CCCCchHHHHHHHHHHHHhhc
Q psy1500 23 TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKP-HAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 23 ~~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~-~~~~~apl~IG~~v~~~~l~~ 79 (80)
+.+.++.+.+++++.|+++|++|++.++.+.++++. ......|+.+|+++...++.+
T Consensus 121 ~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~ 178 (228)
T cd00333 121 TYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAIGLAG 178 (228)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCcHHHHHHHHHHHHHHHh
Confidence 445667789999999999999999999999876653 234578999999999887653
No 15
>PLN00183 putative aquaporin NIP7; Provisional
Probab=98.21 E-value=4.2e-06 Score=57.82 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhheeecCCCCCCCCchHHHHHHHHHHHHhhc
Q psy1500 25 LNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 25 ~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~~~~~apl~IG~~v~~~~l~~ 79 (80)
+.|..+.+++++.|+++|++|++.+++++++++. .+...|+.+|+++.+.++++
T Consensus 154 ~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~-~~~~~~l~iGl~v~~~v~~~ 207 (274)
T PLN00183 154 TKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQS-LGHLSGFVIGIAIGLAVLIT 207 (274)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhheeeccccC-CCCceehHHHHHHHHHHHhc
Confidence 3455678999999999999999999999876543 24578999999999987754
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=97.30 E-value=0.00084 Score=47.06 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=39.0
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHhhheeec--CCCCCCCCc--hHHHHHHHHHHHHhhc
Q psy1500 24 TLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD--GNKPHAKAP--AALAIGLTVALGHLAA 79 (80)
Q Consensus 24 ~~~~~~s~~~a~~~E~i~T~~Lv~~vl~~~~--~~~~~~~~~--apl~IG~~v~~~~l~~ 79 (80)
.+.++.+.+|.++.|+++||+|+++.++... ++....... .++++|+++++.+++.
T Consensus 63 ~~~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~ 122 (298)
T PLN00026 63 LPPPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILST 122 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHh
Confidence 3455678889999999999999999986422 111111122 3578999999888653
No 17
>PLN00183 putative aquaporin NIP7; Provisional
Probab=97.13 E-value=0.0011 Score=45.95 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhheeecCCCCC--CCCc--hHHHHHHHHHHHHhh
Q psy1500 27 KHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPH--AKAP--AALAIGLTVALGHLA 78 (80)
Q Consensus 27 ~~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~~--~~~~--apl~IG~~v~~~~l~ 78 (80)
-+.+.+++++.|+++||+++++.+++...++.. ..+. .++.+|+++.+.+++
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~ 95 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFS 95 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998875543221 1133 466899998887765
No 18
>PLN00184 aquaporin NIP1; Provisional
Probab=97.07 E-value=0.0014 Score=45.94 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.8
Q ss_pred CChhhHHHHHHHHHHHHHHhhheeec--CCCCCCCCchHHHH--HHHHHHHHhh
Q psy1500 29 LTPVQGMGIEFFLGFVLVLVIFGVCD--GNKPHAKAPAALAI--GLTVALGHLA 78 (80)
Q Consensus 29 ~s~~~a~~~E~i~T~~Lv~~vl~~~~--~~~~~~~~~apl~I--G~~v~~~~l~ 78 (80)
.+.++.++.|+++||+|+++.++... ..+....+..++++ |++|++.+++
T Consensus 51 ~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~ 104 (296)
T PLN00184 51 VPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYS 104 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999987642 21111123444544 9988888764
No 19
>PLN00027 aquaporin TIP; Provisional
Probab=96.90 E-value=0.0026 Score=43.44 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhheee-------cCCCCCCCC--chHHHHHHHHHHHHhhc
Q psy1500 30 TPVQGMGIEFFLGFVLVLVIFGVC-------DGNKPHAKA--PAALAIGLTVALGHLAA 79 (80)
Q Consensus 30 s~~~a~~~E~i~T~~Lv~~vl~~~-------~~~~~~~~~--~apl~IG~~v~~~~l~~ 79 (80)
..+|+++.|+++|++|++..++.. ++++....+ ..++.+|+++++.++++
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~ 76 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVG 76 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988662 111111112 46899999998887653
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=96.52 E-value=0.0053 Score=42.14 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=37.5
Q ss_pred CChhhHHHHHHHHHHHHHHhhheeecCCC-----CC--C--CCchHHHHHHHHHHHHhhc
Q psy1500 29 LTPVQGMGIEFFLGFVLVLVIFGVCDGNK-----PH--A--KAPAALAIGLTVALGHLAA 79 (80)
Q Consensus 29 ~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~-----~~--~--~~~apl~IG~~v~~~~l~~ 79 (80)
-+.+++++.|+++||+|++..++....++ .. . ....++.+|+++++.+++.
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~ 78 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIA 78 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999988754221 10 0 1147899999999887653
No 21
>PLN00166 aquaporin TIP2; Provisional
Probab=96.44 E-value=0.0077 Score=41.16 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHHHHHHhhheeecC--C-C--CC--CCC--chHHHHHHHHHHHHhhc
Q psy1500 29 LTPVQGMGIEFFLGFVLVLVIFGVCDG--N-K--PH--AKA--PAALAIGLTVALGHLAA 79 (80)
Q Consensus 29 ~s~~~a~~~E~i~T~~Lv~~vl~~~~~--~-~--~~--~~~--~apl~IG~~v~~~~l~~ 79 (80)
.+.+|+++.|+++||+|++..++...+ + + +. ..+ ..++.+|+++++.+++.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~ 74 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIA 74 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999998887432 1 1 11 112 25677999998887653
No 22
>PLN00182 putative aquaporin NIP4; Provisional
Probab=96.07 E-value=0.014 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhhheeecCCCC--CCCCch--HHHHHHHHHHHHhh
Q psy1500 28 HLTPVQGMGIEFFLGFVLVLVIFGVCDGNKP--HAKAPA--ALAIGLTVALGHLA 78 (80)
Q Consensus 28 ~~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~--~~~~~a--pl~IG~~v~~~~l~ 78 (80)
+.+.++.++.|+++||+|++..+++...++. ...+.. ++++|+.++..+++
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~ 92 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYS 92 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999998876332111 111233 44789988887764
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=95.88 E-value=0.021 Score=39.91 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhheeecCCCC-C-CCC--chHHHHHHHHHHHHhh
Q psy1500 30 TPVQGMGIEFFLGFVLVLVIFGVCDGNKP-H-AKA--PAALAIGLTVALGHLA 78 (80)
Q Consensus 30 s~~~a~~~E~i~T~~Lv~~vl~~~~~~~~-~-~~~--~apl~IG~~v~~~~l~ 78 (80)
..++.++.|+++|+++++..+++...... + ..+ ..++++|+++.+.+.+
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~ 100 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLV 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 44589999999999999998876432211 1 112 3467788888776654
No 24
>PRK05420 aquaporin Z; Provisional
Probab=95.40 E-value=0.052 Score=36.63 Aligned_cols=47 Identities=34% Similarity=0.294 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHhhheeecC-CC-C-CCCCc--hHHHHHHHHHHHHhh
Q psy1500 32 VQGMGIEFFLGFVLVLVIFGVCDG-NK-P-HAKAP--AALAIGLTVALGHLA 78 (80)
Q Consensus 32 ~~a~~~E~i~T~~Lv~~vl~~~~~-~~-~-~~~~~--apl~IG~~v~~~~l~ 78 (80)
+|.++.|+++|++|++..++.... ++ + ...+. .++++|+++...+.+
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~ 53 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYA 53 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 578999999999999987765321 11 1 11122 378999999888764
No 25
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=95.16 E-value=0.039 Score=36.88 Aligned_cols=46 Identities=26% Similarity=0.207 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhhheeecCCC-CC--CC--CchHHHHHHHHHHHHhh
Q psy1500 33 QGMGIEFFLGFVLVLVIFGVCDGNK-PH--AK--APAALAIGLTVALGHLA 78 (80)
Q Consensus 33 ~a~~~E~i~T~~Lv~~vl~~~~~~~-~~--~~--~~apl~IG~~v~~~~l~ 78 (80)
|.++.|+++|+++++..++...+++ .+ .. ...++.+|+.+...+..
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~ 51 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYA 51 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999988743322 11 11 24588999998877654
No 26
>KOG0223|consensus
Probab=88.24 E-value=1.5 Score=30.04 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHHHHHHhhheeecCCC--CCCC--CchHHHHHHHHHHHHh
Q psy1500 29 LTPVQGMGIEFFLGFVLVLVIFGVCDGNK--PHAK--APAALAIGLTVALGHL 77 (80)
Q Consensus 29 ~s~~~a~~~E~i~T~~Lv~~vl~~~~~~~--~~~~--~~apl~IG~~v~~~~l 77 (80)
.+.+|+++.|++.|++++|.-++.....+ ..+. ....+..|+.++..+.
T Consensus 8 ~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~ 60 (238)
T KOG0223|consen 8 VSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVY 60 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHh
Confidence 46789999999999999999876643222 1111 1345677777776653
No 27
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=87.48 E-value=0.63 Score=30.79 Aligned_cols=42 Identities=33% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhheeecC---CC--CCC----CCchHHHHHHHHHHHHhh
Q psy1500 37 IEFFLGFVLVLVIFGVCDG---NK--PHA----KAPAALAIGLTVALGHLA 78 (80)
Q Consensus 37 ~E~i~T~~Lv~~vl~~~~~---~~--~~~----~~~apl~IG~~v~~~~l~ 78 (80)
.|+++|++|++..+++..+ ++ +.. ....++.+|+++...+..
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~ 51 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYC 51 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4999999999998877432 11 111 113688899998877654
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=82.60 E-value=1.6 Score=28.82 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHHHHHHhhhee
Q psy1500 30 TPVQGMGIEFFLGFVLVLVIFGV 52 (80)
Q Consensus 30 s~~~a~~~E~i~T~~Lv~~vl~~ 52 (80)
+.+|.++.|+++|+++++..++.
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~ 28 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGS 28 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999887653
No 29
>KOG0224|consensus
Probab=65.56 E-value=11 Score=26.84 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHHHHHHhhheeecC---CCCCCC--CchHHHHHHHHHHHHhhc
Q psy1500 30 TPVQGMGIEFFLGFVLVLVIFGVCDG---NKPHAK--APAALAIGLTVALGHLAA 79 (80)
Q Consensus 30 s~~~a~~~E~i~T~~Lv~~vl~~~~~---~~~~~~--~~apl~IG~~v~~~~l~~ 79 (80)
...+.++.|+++|++|++.=+++.-. .+.+.+ ....++-|+.+++.++++
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyva 84 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVA 84 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhh
Confidence 34688999999999998874444311 111111 123466667776666543
No 30
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=51.98 E-value=19 Score=24.75 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHhhheee---c-CCC-C-CCC-CchHHHHHHHHHHHHhh
Q psy1500 31 PVQGMGIEFFLGFVLVLVIFGVC---D-GNK-P-HAK-APAALAIGLTVALGHLA 78 (80)
Q Consensus 31 ~~~a~~~E~i~T~~Lv~~vl~~~---~-~~~-~-~~~-~~apl~IG~~v~~~~l~ 78 (80)
..+-++.|+++|++|++.-.++. + ++. . ..+ ....+.-|+.|.+.+++
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~ 58 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYA 58 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHh
Confidence 34567999999999999855442 1 111 1 111 12466777777776653
No 31
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=38.31 E-value=25 Score=24.49 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.8
Q ss_pred CCchHHHHHHHHHHHHhh
Q psy1500 61 KAPAALAIGLTVALGHLA 78 (80)
Q Consensus 61 ~~~apl~IG~~v~~~~l~ 78 (80)
..+.|++||.+++++++.
T Consensus 270 ~~~vPIaVG~~La~lvli 287 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLI 287 (306)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 358999999998887765
No 32
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=31.68 E-value=53 Score=14.12 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHH
Q psy1500 63 PAALAIGLTVALG 75 (80)
Q Consensus 63 ~apl~IG~~v~~~ 75 (80)
.+|+.+|..+...
T Consensus 5 IaPi~VGvvl~l~ 17 (21)
T PF13955_consen 5 IAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 5788888877653
No 33
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.22 E-value=1.4e+02 Score=17.98 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHHh
Q psy1500 61 KAPAALAIGLTVALGHL 77 (80)
Q Consensus 61 ~~~apl~IG~~v~~~~l 77 (80)
+...|+.+|+++.++.+
T Consensus 14 g~sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVT 30 (102)
T ss_pred CcccHhHHHHHHHHHHH
Confidence 45778888888887764
No 34
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=22.12 E-value=1.7e+02 Score=16.76 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhheeecCCCC
Q psy1500 35 MGIEFFLGFVLVLVIFGVCDGNKP 58 (80)
Q Consensus 35 ~~~E~i~T~~Lv~~vl~~~~~~~~ 58 (80)
....+++|.+.+.+++....+|+.
T Consensus 40 V~~D~vlTLLIv~~vy~car~r~r 63 (79)
T PF07213_consen 40 VAADAVLTLLIVLVVYYCARPRRR 63 (79)
T ss_pred HHHHHHHHHHHHHHHHhhcccccC
Confidence 467889999999999888765544
No 35
>PRK10591 hypothetical protein; Provisional
Probab=20.47 E-value=2e+02 Score=16.96 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHhhheeec
Q psy1500 33 QGMGIEFFLGFVLVLVIFGVCD 54 (80)
Q Consensus 33 ~a~~~E~i~T~~Lv~~vl~~~~ 54 (80)
.-++.|+++-.+|+...++++|
T Consensus 10 ~VlilE~lGi~LLv~a~Lsind 31 (92)
T PRK10591 10 SVLILEVLGMLLLVVAYLSLND 31 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHcc
Confidence 3578999999999999999987
Done!