RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1500
(80 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 77.9 bits (192), Expect = 4e-19
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
+TP G LG+TT++ +LT G+ +E + F LV IF CD + ALAIG
Sbjct: 152 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIG 211
Query: 70 LTVALGHLAA 79
+VA+GHL A
Sbjct: 212 FSVAIGHLFA 221
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 77.1 bits (190), Expect = 5e-19
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
+TP G LG+TT++ +LT G+ +E + F LV IF CD + ALAIG
Sbjct: 113 LVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIG 172
Query: 70 LTVALGHLAA 79
+VA+GHL A
Sbjct: 173 FSVAIGHLFA 182
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 73.9 bits (182), Expect = 6e-18
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
+ P + +GNL + LN + T Q M +E L F L L IF D + AL+IG
Sbjct: 108 GVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIG 167
Query: 70 LTVALGHLAA 79
L+V LGHL
Sbjct: 168 LSVTLGHLVG 177
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 73.0 bits (180), Expect = 8e-18
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
+TP G LG+T ++ +LT G+ +E + F LV IF CD + ALAIG
Sbjct: 104 LVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIG 163
Query: 70 LTVALGHLAA 79
+VA+GHL A
Sbjct: 164 FSVAIGHLFA 173
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 72.7 bits (179), Expect = 1e-17
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
++TP +GNL L TL+ ++ Q +E FL VL IF D + ALA+G
Sbjct: 106 SVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG 165
Query: 70 LTVALGHLAA 79
++ LGHL
Sbjct: 166 FSLTLGHLFG 175
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 72.0 bits (177), Expect = 3e-17
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
+T + +LGL L + QG+GIE LVL + D + LAIG
Sbjct: 116 GITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIG 175
Query: 70 LTVALGHLAA 79
+VALGHL A
Sbjct: 176 FSVALGHLLA 185
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 63.9 bits (156), Expect = 4e-14
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 10 ALTPADFQGN-LGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKP----HAKAPA 64
A + G ++ +G E FVLV +F D + H A
Sbjct: 162 AFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILA 221
Query: 65 ALAIGLTVALGHLAA 79
L IG V + HLA
Sbjct: 222 PLPIGFAVFMVHLAT 236
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 61.2 bits (149), Expect = 3e-13
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 4 LFSNSQALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAP 63
+ + + F N + V + IE L ++VI G G P AP
Sbjct: 130 IATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAP 189
Query: 64 AALAIGLTVALGHLAA 79
+AIGL + L HL +
Sbjct: 190 --IAIGLALTLIHLIS 203
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 58.8 bits (143), Expect = 2e-12
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 11 LTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGL 70
+ F N + + + +E L +LVI G D P AP +AIGL
Sbjct: 114 AAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAP--IAIGL 171
Query: 71 TVALGHLAA 79
L HL +
Sbjct: 172 ACTLIHLIS 180
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 56.6 bits (137), Expect = 1e-11
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 10 ALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIG 69
A+TP + L + +G+ +E F +L L + + K A A IG
Sbjct: 150 AMTPGEIAFA---NALGGGASRTRGLFLEAFGTAILCLTVLMLAV-EKHRATWFAPFVIG 205
Query: 70 LTVALGHLAA 79
+ + + HL
Sbjct: 206 IALLIAHLIC 215
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 48.1 bits (115), Expect = 1e-08
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 12 TPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLT 71
A G LG T ++ Q M E F+L++ I G+ + K A + IGLT
Sbjct: 124 IGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERA-PKGFAGIIIGLT 182
Query: 72 VALGHLAA 79
VA
Sbjct: 183 VAGIITTL 190
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 39.9 bits (94), Expect = 1e-05
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 23 TTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD-GNKPHAKAPAALAIGLTVALGHLA 78
T N H+ VQ +E + +L+ +I + D GN A L IGL +A+ +
Sbjct: 137 TYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGAS 193
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 37.6 bits (88), Expect = 1e-04
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 9 QALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGN--KPHAKAPAAL 66
++ + T+ N ++ E L +L+LVI V D N +
Sbjct: 112 GFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSS 171
Query: 67 AIGLTVALGHLA 78
+GL + +
Sbjct: 172 VVGLIILCIGIT 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.001
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 57 KPHA--KAPAALAIGLTV 72
K +A APA LAI T+
Sbjct: 30 KLYADDSAPA-LAIKATM 46
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 25.6 bits (56), Expect = 1.7
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 27 KHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAIGLTVALGHLAA 79
+ L G + GFV+ +IF + + L L +A L +
Sbjct: 54 QALILQLLPGTQGLYGFVIAFLIFINLGSDMSVVQGLNFLGASLPIAFTGLFS 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 7.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 33 QGMGIEFFLGFVLVLVIFGVCD 54
QGMG++ + ++ D
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRAD 1650
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.426
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,206,500
Number of extensions: 60702
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 19
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)