RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1500
         (80 letters)



>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 234

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 9   QALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAI 68
            ++TP   +GNL L TL+  ++  Q   +E FL    VL IF   D  +       ALA+
Sbjct: 100 YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 159

Query: 69  GLTVALGHLAAF 80
           G ++ LGHL   
Sbjct: 160 GFSLTLGHLFGM 171


>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 249

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 32/69 (46%)

Query: 9   QALTPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCDGNKPHAKAPAALAI 68
             +T +    +LGL  L   +   QG+GIE      LVL +    D  +        LAI
Sbjct: 115 SGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAI 174

Query: 69  GLTVALGHL 77
           G +VALGHL
Sbjct: 175 GFSVALGHL 183


>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
           {Escherichia coli [TaxId: 562]}
          Length = 254

 Score = 31.3 bits (70), Expect = 0.006
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 12  TPADFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGVCD-GNKPHAKAPAALAIGL 70
             +        T  N H+  VQ   +E  +  +L+ +I  + D GN       A L IGL
Sbjct: 121 VESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGL 180

Query: 71  TVALGHLAA 79
            +A+   + 
Sbjct: 181 LIAVIGASM 189


>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 273

 Score = 25.8 bits (57), Expect = 0.50
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 15  DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFGV 52
           D+  N G   LN H  P     + F     + L + G 
Sbjct: 155 DWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGG 192


>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 281

 Score = 25.4 bits (56), Expect = 0.77
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 15  DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG 51
           D+  N G T  N H  P   + I FF    L L + G
Sbjct: 155 DWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHG 191


>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 24.3 bits (53), Expect = 1.7
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 15  DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG 51
           D+  N  L   N    P  G+ I F  G  L+  + G
Sbjct: 184 DWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHG 220


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 24.3 bits (53), Expect = 1.9
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 15  DFQGNLGLTTLNKHLTPVQGMGIEFFLGFVLVLVIFG 51
           D+     +   N +  P  G  I F  G  L+    G
Sbjct: 182 DWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHG 218


>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits,
          N-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 86

 Score = 23.0 bits (49), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 6  SNSQALTPADFQGNLGLTTLNKHLTP 31
          + ++ALT A+ +GN  L T  + +TP
Sbjct: 22 NGTRALTVAELRGNAELQTYLRQITP 47


>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits,
          N-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 86

 Score = 23.0 bits (49), Expect = 3.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 6  SNSQALTPADFQGNLGLTTLNKHLTP 31
          + ++ALT A+ +G+  L    +H+T 
Sbjct: 22 NKTRALTVAELRGSGDLQEYLRHVTR 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,225
Number of extensions: 9969
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 13
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)