BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15002
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKAL-TQLDLSQNSLAV 199
+R+ L GN ++ VP S NL L L N +A I+ F G AL QLDLS N+
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
PA F GL L L + L + P F+GL
Sbjct: 94 SVDPA-----------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGL-AA 129
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+ L L N L +P + L NL L L NRI+ + E F GLH+LD L+L N++
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ P F L L +L L N++ + A + L A
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ +R+ L GN ++ VP S NL L L N +A I+ F GL L+ L L+
Sbjct: 28 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 87
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
N QLR++ P F L L++L LD + + P F GL A
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 129
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
L+ L L N L +P + L NL L L NRI+ + E F G +L +L L QN
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+A V H +AF+ L L L +F N LS + ++ L
Sbjct: 188 VAHV------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 257 EKKLKRLNLGGN 268
+ L+ L L N
Sbjct: 224 -RALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKAL-TQLDLSQNSLAV 199
+R+ L GN ++ VP S NL L L N +A I+ F G AL QLDLS N+
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
PA F GL L L + L + P F+GL
Sbjct: 95 SVDPA-----------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGL-AA 130
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+ L L N L +P + L NL L L NRI+ + E F GLH+LD L+L N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ P F L L +L L N++ + A + L A
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ +R+ L GN ++ VP S NL L L N +A I+ F GL L+ L L+
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
N QLR++ P F L L++L LD + + P F GL A
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
L+ L L N L +P + L NL L L NRI+ + E F G +L +L L QN
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+A V H +AF+ L L L +F N LS + ++ L
Sbjct: 189 VAHV------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 257 EKKLKRLNLGGN 268
+ L+ L L N
Sbjct: 225 -RALQYLRLNDN 235
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+R+ L GN ++ VP S NL L L N +A I+ F G L QLDLS N+
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
V P F+GL L L + L + P F+GL
Sbjct: 94 VVDP-----------------------TTFRGLGHLHTLHLDRCGLQELGPGLFRGL-AA 129
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+ L L N L +P + L NL L L NRI + E F GLH+LD L+L N +
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
+ P F L L +L L N++
Sbjct: 190 RVHPHAFRDLGRLMTLYLFANNL 212
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ +R+ L GN ++ VP S NL L L N +A I+ F GL L+ L L+
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
N QLR + P F L L++L LD + + P F GL A
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAA 129
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 226 SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENL 284
+ +FQ L IL + N L+ I+ +F GL L++L+L N +L V T+ L +L
Sbjct: 48 AASFQSCRNLTILWLHSNALAGIDAAAFTGL-TLLEQLDLSDNAQLRVVDPTTFRGLGHL 106
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
L L + + G F GL L L L N L+ +P F L L L L GN I +
Sbjct: 107 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 345 VDPAAFSGLEA 355
V AF GL +
Sbjct: 167 VPEHAFRGLHS 177
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 26/132 (19%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
L+ L L N L +P + L NL L L NRI + E F G +L +L L QN
Sbjct: 128 AALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNH 187
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+A V H +AF+ L L L +F N LS++ + L
Sbjct: 188 VARV------------------------HPHAFRDLGRLMTLYLFANNLSMLPAEVLVPL 223
Query: 257 EKKLKRLNLGGN 268
+ L+ L L N
Sbjct: 224 -RSLQYLRLNDN 234
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ LNL N + + + L +L L+L N + IE G F G +L L+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEK 258
VP+ A ++ S AF + +L L + E +L I +F+GL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-V 156
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
L+ LNLG L +P +L+ L L +LEL NR+ LI G F+GL +L L L H Q+
Sbjct: 157 NLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
TI F L L L L N++ ++ F+ L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ L+ L L N + ++ + + L +L LEL NR+ + FE L +L L N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSN-AFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ +PS A S AF+GL L L + +L + +
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL--GMCNLKDIPNLTA 176
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L +L+ L L GN L + S L +LRKL L+H ++A IE F+ L +L+ L L+H
Sbjct: 177 L-VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
N L ++P +F L L + L+ N H
Sbjct: 236 NNLMSLPHDLFTPLHRLERVHLNHNPWHC 264
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
EL VP S N R L L N I +I F+ L +L+ L L+ N +R I F
Sbjct: 25 ELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
LP LN+LEL N + TV AF L
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYL 106
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ LNL N + + + L +L L+L N + IE G F G +L L+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEK 258
VP+ A ++ S AF + +L L + E +L I +F+GL
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-V 156
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
L+ LNLG L +P +L+ L L +LEL NR+ LI G F+GL +L L L H Q+
Sbjct: 157 NLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
TI F L L L L N++ ++ F+ L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 5/208 (2%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ L+ L L N + ++ + + L +L LEL NR+ + FE L +L L N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSN-AFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ +PS A S AF+GL L L + +L + +
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL--GMCNLKDIPNLTA 176
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L +L+ L L GN L + S L +LRKL L+H ++A IE F+ L +L+ L L+H
Sbjct: 177 L-VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIH 343
N L ++P +F L L + L+ N H
Sbjct: 236 NNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
EL VP S N R L L N I +I F+ L +L+ L L+ N +R I F
Sbjct: 25 ELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
LP LN+LEL N + TV AF L
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYL 106
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 101/229 (44%), Gaps = 25/229 (10%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQ 194
I + LNL N + + + L +L L+L N I IE G F G A L L+L
Sbjct: 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSF 253
N L V+PS A ++ S AF + +L L + E KL I +F
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 254 KGLEKKLKRLNLG----------------------GNELTRVPQTSLSKLENLRKLELLH 291
+GL LK LNLG GN + S L +L+KL +++
Sbjct: 193 EGL-FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
++++LIE F+GL +L L LAHN L ++P +F L L L L N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAXXXX 208
L+ VPQ S N R L L+ N I +I+ F L L L +NS+
Sbjct: 66 LSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI----------- 111
Query: 209 XXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+ AF GL +L L +F+N L++I +F+ L KL+ L L N
Sbjct: 112 -------------RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNN 157
Query: 269 ELTRVPQTSLSKLENLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+ +P + +++ +L +L+L ++ I EG FEGL NL L L ++ +P
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215
Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLEA 355
L L LE+ GNH + P +F GL +
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSS 243
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAV 199
K+L+L N+L+ +P + +L LR L L N++ + G F E K L L ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+P F L L L + N+L + P F L K
Sbjct: 100 LPI------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK- 134
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+LG NEL +P+ KL +L++L L +N++ + EG F+ L L +L L +NQL+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 320 TIPPRVFAHLPLLNSLELDGN 340
+P F L L L+L N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 1/166 (0%)
Query: 189 QLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLI 248
+LDL N L+ +PS A L + F+ L LE L + +NKL +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
F L L L L N+L +P L L L L +N + + +G F+ L +L
Sbjct: 101 PIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L L +NQL+ +P F L L +L+LD N + V AF LE
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K+L+L N+L+ +P + +L LR L L N++ + G F+ L NL++L + N+L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+P VF L L L LD N + ++ P F L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSL 197
KL+ L L N+L +P +L+NL L + N++ + G F+ L +L L +N L
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+P F L L L++ N+L + F L
Sbjct: 122 KSLP------------------------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
LK L L N+L RVP+ + KL L+ L+L +N++ + EG F+ L L L L N
Sbjct: 158 -SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 92 IFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNEL 150
+ YL L +N L L +F L ++ L ++N + +LK L L N+L
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNNQL 193
Query: 151 TRVPQTSLSKLENLRKLELLHN 172
RVP+ + LE L+ L+L N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
KG+ + + L L GN+ T VP+ LS ++L ++L +NRI+ + F + L +L+L
Sbjct: 27 KGIPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
++N+LR IPPR F L L L L GN I V AF+ L A
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K L ++L N ++ + S S + L L L +NR+ I F+GL +L L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ +P F L L+ L + N ++
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANPLYC 140
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
L + +F + L L + N+L I P +F GL K L+ L+L GN+++ VP+ + + L
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 283 NLRKLELLHN 292
L L + N
Sbjct: 127 ALSHLAIGAN 136
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
K L ++L N ++ + S S + L L L +NR+ I F+G K+L L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 197 LAVVPSPA 204
++VVP A
Sbjct: 114 ISVVPEGA 121
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 5/209 (2%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQ 194
I + LNL N++ + S L +L L+L N I IE G F G A L L+L
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSF 253
N L +P+ A ++ S AF + +L L + E +LS I +F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
+GL L+ LNL L +P +L+ L L +L+L N ++ I G F+GL +L L +
Sbjct: 182 EGL-SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
+Q++ I F +L L + L N++
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 29/181 (16%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH-NRIALIEEGDFEGKA-LTQLDLSQN 195
KLK L L N + +P + +++ +LR+L+L R++ I EG FEG + L L+L+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 196 SLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+L +P+ L L+ L + N LS I P SF+G
Sbjct: 196 NLREIPN--------------------------LTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L L++L + +++ + + + L++L ++ L HN + L+ F LH+L+ + L H
Sbjct: 230 L-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
Query: 316 N 316
N
Sbjct: 289 N 289
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
+L + EN++ +I+ +SFK L + L+ L L N + + + + L NL LEL NR+
Sbjct: 68 LLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 354
I G F L L L L +N + +IP F +P L L+L + + + AF GL
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
PD G+ + LNL N++ + S L +L L+L N I IE G F GL NL+
Sbjct: 59 PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+L L N+L TIP F +L L L L N I ++ AF+
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L L GN+L +P KL NL++L L+ N++ + +G F+ L NL L L HNQL+
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++P VF L L L+LD N + ++ F L
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL 287
A + L L L + N+L + F L LK L L N+L +P KL NL L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
L HN++ + +G F+ L NL L L +NQL+++P VF L L L L+ N + +V
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 348 AAFSGLEA 355
F L +
Sbjct: 199 GVFDRLTS 206
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+L + F L L+ L + EN+L + PD L L L N+L +P+ KL
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLT 157
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
NL +L+L +N++ + EG F+ L L L L NQL+++P VF L L + L N
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L L L GN+L +P KL NL++L L+ N++ + +G F+ LT L L N L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+P F L L L + N+L + F L
Sbjct: 147 SLP------------------------KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL-T 181
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
+LK+L+L N+L VP +L +L + LL+N
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
YL L HN L L +F L ++ L + N + +LK+L+L N+L
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL-TQLKQLSLNDNQLKS 195
Query: 153 VPQTSLSKLENLRKLELLHN 172
VP +L +L + LL+N
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
L+L N+++ + + L++L L L++N+I+ I E F + L +L +S+N L +P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
+ F GL + + + N L S EP +F GL K
Sbjct: 119 P---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--K 173
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L + +LT +P+ E L +L L HN+I IE D L L L HNQ+R
Sbjct: 174 LNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
I + LP L L LD N + V PA L+
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLK 264
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
+L + N +S + D FKGL+ L L L N+++++ + + S L L+KL + N +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 297 IEEGDFEGLHNLDS----LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT--VDPAAF 350
I NL S L + N++R +P VF+ L +N +E+ GN + +P AF
Sbjct: 117 IPP-------NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 351 SGLE 354
GL+
Sbjct: 170 DGLK 173
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L L+L N++ + L + L +L L HN+I +IE G L +L L N L+
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 199 VVPS 202
VP+
Sbjct: 255 RVPA 258
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 9/222 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
LK LNL NEL+++ + NL +L+L+ N I I+ F+ K L +LDLS N L+
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNA--FQGLDTLEILTIFENKLSLIEPDSFKGL 256
AL S F G +L L + N L P F+ +
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 257 EKKLKRLNLGGNELT-RVPQTSLSKLEN--LRKLELLHNRIALIEEGDFEGLH--NLDSL 311
KL L L +L + + +L N ++ L L +N++ E F GL NL L
Sbjct: 195 -GKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L++N L + F++LP L L L+ N+I + P +F GL
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 40/255 (15%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG----------KALTQ 189
L +L+L N L V S S L +LR L L +N I + F G +A T+
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK 309
Query: 190 LDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSL-- 247
+S S + + + SN F GL +L+ L++ + SL
Sbjct: 310 QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQT 369
Query: 248 IEPDSFKGLEKK-LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGL 305
+ ++F L L LNL N ++++ + S L LR L+L N I G ++ GL
Sbjct: 370 LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL 429
Query: 306 HNLDSLVLAHN---QLRT-----------------------IPPRVFAHLPLLNSLELDG 339
N+ + L++N QL T I P F L L L+L
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSN 489
Query: 340 NHIHTVDPAAFSGLE 354
N+I ++ GLE
Sbjct: 490 NNIANINEDLLEGLE 504
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L + LNL N+L R+P T+ ++ L L+ N I+ +E + L L L L H
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
N+L I + F L L+L N IH + F
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPF 117
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
F L IL N +S +EP+ + L LK LNL NEL+++ + NL +L+
Sbjct: 45 FTRYSQLAILDAGFNSISKLEPELCQIL-PLLKVLNLQHNELSQISDQTFVFCTNLTELD 103
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L+ N I I+ F+ NL L L+HN L +
Sbjct: 104 LMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 112/288 (38%), Gaps = 32/288 (11%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXX--------XXIGKKLKRLN 144
YL L +NN+ +L+ F+GL ++R+L++ K L+ LN
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLN 335
Query: 145 LGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGKA---LTQLDLSQNSLAV 199
+ N + + + L +L+ L L +L + F A L L+L++N ++
Sbjct: 336 MDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISK 395
Query: 200 VPSPAXXXXXXXXXXXX-XXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ + L ++GL + + + NK + SF L
Sbjct: 396 IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVP 454
Query: 259 KLKRLNLGGNELTRV--PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L+RL L L V + L NL L+L +N IA I E EGL NL+ L HN
Sbjct: 455 SLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHN 514
Query: 317 QLRTIPPRV-----------FAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L + R +HL +LN L+ N + + F L
Sbjct: 515 NLARLWKRANPGGPVNFLKGLSHLHILN---LESNGLDEIPVGVFKNL 559
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
K ++ G L VP + E KL+L +A + + F G LT L+L N L
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTE---KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
L + F L L L + N+L+ + F L +
Sbjct: 74 ------------------------LSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQ 108
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L +L LGGN+L +P +L L++L L N++ I G F+ L NL +L L+ NQL+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
++P F L L ++ L GN
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
E L + L+ + +F+GL KL LNL N+L + L L L L +N++A
Sbjct: 38 EKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ G F+ L LD L L NQL+++P VF L L L L+ N + ++ AF L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
L F+GL L L + N+L + F L +L L L N+L +P L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLASLPLGVFDHLT 107
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
L KL L N++ + G F+ L L L L NQL++IP F L L +L L N +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 343 HTVDPAAFSGL 353
+V AF L
Sbjct: 168 QSVPHGAFDRL 178
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ ++L+L L + + L L L L +N++ + G F+ L L +L LA
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+NQL ++P VF HL L+ L L GN + ++ F L
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
+L L +N L L+ +F L ++ L + N + +L +L LGGN+L
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKS 121
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA 204
+P +L L++L L N++ I G F+ L L LS N L VP A
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLD---LSQN 195
KL LNL N+L + L L L L +N++A + G F+ LTQLD L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGGN 117
Query: 196 SLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
L +PS ++ + AF L L+ L++ N+L + +F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
L KL+ + L GN Q S+ E L + + +++G + LH
Sbjct: 178 L-GKLQTITLFGN------QFDCSRCEILYLSQWIRENSNKVKDGTGQNLH 221
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
K ++ G L VP + E KL+L +A + + F G LT L+L N L
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTE---KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
L + F L L L + N+L+ + F L +
Sbjct: 74 ------------------------LSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQ 108
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L +L LGGN+L +P +L L++L L N++ I G F+ L NL +L L+ NQL+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
++P F L L ++ L GN
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
E L + L+ + +F+GL KL LNL N+L + L L L L +N++A
Sbjct: 38 EKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ G F+ L LD L L NQL+++P VF L L L L+ N + ++ AF L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
L F+GL L L + N+L + F L +L L L N+L +P L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLASLPLGVFDHLT 107
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
L KL L N++ + G F+ L L L L NQL++IP F L L +L L N +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 343 HTVDPAAFSGL 353
+V AF L
Sbjct: 168 QSVPHGAFDRL 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ ++L+L L + + L L L L +N++ + G F+ L L +L LA
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+NQL ++P VF HL L+ L L GN + ++ F L
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLD---LSQN 195
KL LNL N+L + L L L L +N++A + G F+ LTQLD L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGGN 117
Query: 196 SLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
L +PS ++ + AF L L+ L++ N+L + +F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
L KL+ + L GN Q S+ E L + + +++G + LH
Sbjct: 178 L-GKLQTITLFGN------QFDCSRCETLYLSQWIRENSNKVKDGTGQNLH 221
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
+L L +N L L+ +F L ++ L + N + +L +L LGGN+L
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKS 121
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA 204
+P +L L++L L N++ I G F+ L L LS N L VP A
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L L GN+L +P KL NL++L L+ N++ + +G F+ L NL L LAHNQL+
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++P VF L L L+L N + ++ F L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+L + F L L+ L + EN+L + PD L LNL N+L +P+ KL
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
NL +L+L +N++ + EG F+ L L L L NQL+++P VF L L + L N
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Query: 343 HTVDPA 348
P
Sbjct: 218 DCTCPG 223
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK 286
+A + L L L + N+L + F L LK L L N+L +P KL NL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
L L HN++ + +G F+ L NL L L++NQL+++P VF L L L L N + +V
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 347 PAAFSGLEA 355
F L +
Sbjct: 198 DGVFDRLTS 206
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L LNL N+L +P+ KL NL +L+L +N++ + EG F+ L L L QN L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 199 VVP 201
VP
Sbjct: 195 SVP 197
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 100/263 (38%), Gaps = 74/263 (28%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLA 198
L+ L L N ++ V + + L NLR L L NR+ LI G F G + LT+LD+S+N +
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ L FQ L L+ L + +N L I +F GL
Sbjct: 118 I------------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-N 152
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH------------ 306
L++L L LT +P +LS L L L L H I I + F+ L+
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 307 ------------NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT---------- 344
NL SL + H L +P HL L L L N I T
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 345 --------------VDPAAFSGL 353
V+P AF GL
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGL 295
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 26/236 (11%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK-ALTQLDLSQ 194
I + + L+LG N + + Q + +L +LEL N ++ +E G F L L L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
N L ++P L FQ L L+ L + +N L I +F
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH-------- 306
GL L++L L LT +P +LS L L L L H I I + F+ L+
Sbjct: 150 GL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 307 ----------------NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
NL SL + H L +P HL L L L N I T++
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
L+ + F LE L + EN +S +EP +F L L+ L L N L +P + L
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLS 104
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
NL KL++ N+I ++ + F+ L+NL SL + N L I R F+ L L L L+ ++
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 343 HTVDPAAFSGLEAKV 357
++ A S L +
Sbjct: 165 TSIPTEALSHLHGLI 179
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 24/225 (10%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L +L++ N++ + L NL+ LE+ N + I F G +L QL L + +L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTI-FENKLSLIEPDSFKGLE 257
+P+ A A+ +F+ L L++L I L + P+ GL
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Query: 258 ----------------------KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
L+ LNL N ++ + + L +L L++++L+ ++A
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
++E F GL+ L L ++ NQL T+ VF + L +L LD N
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
+L + +N++ + D F L+ L L N ++ V + + L NLR L L NR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
LI G F GL NL L ++ N++ + +F L L SLE+ N + + AFSGL +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 26/190 (13%)
Query: 165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXA 223
R L+L NRI + + +F L +L+L++N ++ A
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS------------------------A 70
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
+ AF L L L + N+L LI F GL L +L++ N++ + L N
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYN 129
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
L+ LE+ N + I F GL++L+ L L L +IP +HL L L L +I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 344 TVDPAAFSGL 353
+ +F L
Sbjct: 190 AIRDYSFKRL 199
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
+G+ + + L+LG N + + Q + +L +LEL N ++ +E G F L NL +L L
Sbjct: 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
N+L+ IP VF L L L++ N I
Sbjct: 88 RSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L++L L LT +P +LS L L L L H I I + F+ L L++S
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+P A+ A + L L L + N +S IE L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-L 272
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ + L G +L V + L LR L + N++ +EE F + NL++L+L N L
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 70/251 (27%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
K LK LNL N++ ++ + L+NL+ L L +N + + +F G + +DL +N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIE-----PD 251
+A++ F+ L+ L+ L + +N L+ I PD
Sbjct: 350 IAII------------------------QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 252 SFKGLEK--KLKRLNLGGN----------------ELTRVPQTSL--------------- 278
F K L ++NL N L RVP +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 279 --SKLENLRKLELLHNRIALIEEGD-----FEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
S+ +L +L L N + L E + FEGL +L L L HN L ++PP VF+HL
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 332 LNSLELDGNHI 342
L L L+ N +
Sbjct: 506 LRGLSLNSNRL 516
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+L+S F+ L L++L + NK++ I ++F GL+ L+ LNL N L + ++ L
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLP 338
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
+ ++L N IA+I++ F+ L L +L L N L TI +P + + L GN +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393
Query: 343 HTV 345
T+
Sbjct: 394 VTL 396
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 113/310 (36%), Gaps = 82/310 (26%)
Query: 71 FTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNXXXXXXXX 130
F+ N ++ T+ LK L L +N + K+ F+GLD
Sbjct: 279 FSLNSRVFETLKDLKV--------LNLAYNKINKIADEAFYGLD---------------- 314
Query: 131 XXXXXIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQ 189
L+ LNL N L + ++ L + ++L N IA+I++ F+ + L
Sbjct: 315 --------NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 190 LDLSQNSLAV---VPSPAXXXXXXXXXXXXXXXXXXA----LHSNAFQGLD--------- 233
LDL N+L +PS A L N + LD
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 234 -------------------------TLEILTIFENKLSL-----IEPDSFKGLEKKLKRL 263
+LE L + EN L L + D F+GL L+ L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH-LQVL 485
Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
L N L +P S L LR L L NR+ ++ D NL+ L ++ NQL P
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNP 543
Query: 324 RVFAHLPLLN 333
VF L +L+
Sbjct: 544 DVFVSLSVLD 553
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 28/121 (23%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGLE-------------------------KKLKR 262
AF+ L L IL + +K+ + PD+F+GL K L R
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 263 LNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLR 319
L+L N++ + S KL +L+ ++ N+I L+ E + E L L LA N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 320 T 320
+
Sbjct: 188 S 188
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
L+L N++T + L+NL L L++N+I+ I G F L +L LS+N L +P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
+ + F GL+ + ++ + N L S IE +F+G+ KK
Sbjct: 117 E---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KK 172
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L + + +T +PQ +L +L L N+I ++ +GL+NL L L+ N +
Sbjct: 173 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTV 345
+ A+ P L L L+ N + V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
KL+RL L N+L +P+ L+ LR E N I + + F G + ++L N L
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + AFQG+ L + I + ++ I +GL
Sbjct: 158 K----------------------SSGIENGAFQGMKKLSYIRIADTNITTIP----QGLP 191
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L L+L GN++T+V SL L NL KL L N I+ ++ G +L L L +N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 318 LRTIPPRVFAH 328
L +P + H
Sbjct: 252 LVKVPGGLADH 262
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
L+L N++T + L+NL L L++N+I+ I G F L L+ L L+ NQL+ +P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++ L L + N I V + F+GL
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGL 144
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 272 RVPQTSLSKLENLRK--------LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
RV Q S LE + K L+L +N+I I++GDF+ L NL +L+L +N++ I P
Sbjct: 34 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 324 RVFAHLPLLNSLELDGNHI 342
FA L L L L N +
Sbjct: 94 GAFAPLVKLERLYLSKNQL 112
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
L+L N++T + L+NL L L++N+I+ I G F L +L LS+N L +P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
+ + F GL+ + ++ + N L S IE +F+G+ KK
Sbjct: 117 E---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KK 172
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L + + +T +PQ +L +L L N+I ++ +GL+NL L L+ N +
Sbjct: 173 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTV 345
+ A+ P L L L+ N + V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
KL+RL L N+L +P+ L+ LR E N I + + F G + ++L N L
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + AFQG+ L + I + ++ I +GL
Sbjct: 158 K----------------------SSGIENGAFQGMKKLSYIRIADTNITTIP----QGLP 191
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L L+L GN++T+V SL L NL KL L N I+ ++ G +L L L +N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 318 LRTIPPRVFAH 328
L +P + H
Sbjct: 252 LVKVPGGLADH 262
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
L+L N++T + L+NL L L++N+I+ I G F L L+ L L+ NQL+ +P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++ L L + N I V + F+GL
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGL 144
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 272 RVPQTSLSKLENLRK--------LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
RV Q S LE + K L+L +N+I I++GDF+ L NL +L+L +N++ I P
Sbjct: 34 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 324 RVFAHLPLLNSLELDGNHI 342
FA L L L L N +
Sbjct: 94 GAFAPLVKLERLYLSKNQL 112
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
AL + F LE LT+ +N+++ I+ ++F GL LK LNL N L + L+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLD 347
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L+L +N I + + F GL NL L L NQL+++P +F L L + L N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 249 EPD--SFKGLEKK-LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+PD +FKGLE +K +L +++ + ++ S +L +L L N I I++ F GL
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+L L L+ N L +I R+F +L L L+L NHI + +F GL
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L++L L NE+ ++ + L +L KL L N + I+ FE L L+ L L++N +R
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ + F LP L L LD N + +V F L +
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEGLHNLDSLVLAHNQLRTI 321
++L N + + +TS S+L++L+ L++ L I F GL +L L L +NQ +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
F L L L L ++ D A SG
Sbjct: 95 ETGAFNGLANLEVLTLTQCNL---DGAVLSG 122
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
L++L L NE+ ++ + L +L KL L N + I+ FE L LDLS N
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+ +N F+GL +L IL + N+ +E +F GL NL E+ + Q +L
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA------NL---EVLTLTQCNLDG-- 117
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLELDGNH 341
A++ F+ L +L+ LVL N ++ I P F ++ + L+L N
Sbjct: 118 ------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 342 IHTV 345
+ ++
Sbjct: 166 VKSI 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N++ + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N + + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 182
KL++L+L N+LT +P L+ LENL L L N + I +G F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N++ + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N + + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 182
KL++L+L N+LT +P L+ LENL L L N + I +G F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 263 LNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L L NE T + T + KL LRK+ +N+I IEEG FEG ++ ++L N+L +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
++F L L +L L N I V +F GL +
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 143 LNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVV 200
L L NE T + T + KL LRK+ +N+I IEEG FEG + + ++ L+ N L V
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 201 PSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
F+GL++L+ L + N+++ + DSF GL +
Sbjct: 97 ------------------------QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SV 131
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
+ L+L N++T V + L +L L LL N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
F+ L L + NK++ IE +F+G + + L N L V LE+L+ L
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
L NRI + F GL ++ L L NQ+ T+ P F L L++L L N +
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171
Query: 349 AFSG 352
A+ G
Sbjct: 172 AWLG 175
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 243 NKLSLIEPDS-FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
N+ +++E FK L +L+++N N++T + + + + ++ L NR+ ++
Sbjct: 42 NEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
F+GL +L +L+L N++ + F L + L L N I TV P AF L +
Sbjct: 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
+L+++N N++T + + + + ++ L NR+ ++ F+G ++L L L N +
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
V +++F GL ++ +L++++N+++ + P +F L
Sbjct: 118 TCV------------------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 258 KKLKRLNLGGN 268
L LNL N
Sbjct: 154 -SLSTLNLLAN 163
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ RL L N+L +P KL L KL L N+I + +G F+ L L L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
N+L+++P VF L L L LD N + +V F L +
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297
L + NKL + F L + L +L+L N++ +P KL L L L N++ +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
G F+ L L L L NQL+++P +F L L + L N P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+L F L L L++ +N++ + PD KL L L N+L +P KL
Sbjct: 42 SLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
L++L L N++ + +G F+ L +L + L N PR+
Sbjct: 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 142 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVV 200
RL L N+L +P KL L KL L N+I + +G F+ LT L L +N L +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 201 P 201
P
Sbjct: 92 P 92
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N++ + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N + + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 182
KL++L+L N+LT +P L+ LENL L L N + I +G F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N++ + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N + + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 182
KL++L+L N+LT +P L+ LENL L L N + I +G F
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 157 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 80 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N++ + +GLE
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 173
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N++ + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N++ + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N++ + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N + + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLE 172
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 182
KL++L+L N+LT +P L+ LENL L L N + I +G F
Sbjct: 149 KLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
Q L L +L + N+L+ + + +GL +L+ L L GNEL +P L+ L KL L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+N + + G GL NLD+L+L N L TIP F
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N+L +P L L L++ NR+ + G GL L L L N+L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
T+PP + P L L L N++ + +GLE
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 185 KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENK 244
+ +T++ L QN++ V+P AF L + + N+
Sbjct: 32 ETITEIRLEQNTIKVIPP------------------------GAFSPYKKLRRIDLSNNQ 67
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
+S + PD+F+GL + L L L GN++T +P++ L +L+ L L N+I + F+
Sbjct: 68 ISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
LHNL+ L L N+L+TI F+ L + ++ L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
+T+ + + +N + +I P +F KKL+R++L N+++ + + L +L L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+I + + FEGL +L L+L N++ + F L LN L L N + T+ FS
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 353 LEA 355
L A
Sbjct: 151 LRA 153
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L + + + L N + +P + S + LR+++L +N+I+ + F+GL +L+SLVL
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
N++ +P +F L L L L+ N I+ + AF L
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+ + L N + +P + S + LR+++L +N+I+ + F+G ++L L L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+P L +AFQ L L +L++++NKL I +F L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-R 152
Query: 259 KLKRLNLGGN 268
++ ++L N
Sbjct: 153 AIQTMHLAQN 162
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L +L LGGN+L +P +KL +L L L N++ + G F+ L L L L NQL+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
++P VF L L L L N + +V F L +
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+L + F L +L L + NKL + F L L LNL N+L +P KL
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLSTNQLQSLPNGVFDKLT 100
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
L++L L N++ + +G F+ L L L L NQL+++P VF L L + L N
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Query: 343 HTVDPA 348
P
Sbjct: 161 DCTCPG 166
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
L +L LGGN+L +P +KL +L L L N++ + G F+ L +L L+ N L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 199 VVP 201
+P
Sbjct: 114 SLP 116
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 185 KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENK 244
+ +T++ L QN++ V+P AF L + + N+
Sbjct: 32 ETITEIRLEQNTIKVIPP------------------------GAFSPYKKLRRIDLSNNQ 67
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
+S + PD+F+GL + L L L GN++T +P++ L +L+ L L N+I + F+
Sbjct: 68 ISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQD 126
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
LHNL+ L L N+L+TI F+ L + ++ L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
+T+ + + +N + +I P +F KKL+R++L N+++ + + L +L L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+I + + FEGL +L L+L N++ + F L LN L L N + T+ FS
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 353 LEA 355
L A
Sbjct: 151 LRA 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L + + + L N + +P + S + LR+++L +N+I+ + F+GL +L+SLVL
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
N++ +P +F L L L L+ N I+ + AF L
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDL 127
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+ + L N + +P + S + LR+++L +N+I+ + F+G ++L L L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+P L +AFQ L L +L++++NKL I +F L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-R 152
Query: 259 KLKRLNLGGN 268
++ ++L N
Sbjct: 153 AIQTMHLAQN 162
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
L T E+L + +N+L I D G L +L L N+LT + + ++++L+L
Sbjct: 29 LHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
N+I I F GLH L +L L NQ+ + P F HL L SL L N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 265 LGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
L NEL R+ L +L +L KLEL N++ IE FEG ++ L L N+++ I
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 324 RVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
++F L L +L L N I V P +F L +
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 27/126 (21%)
Query: 145 LGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPS 202
L NEL R+ L +L +L KLEL N++ IE FEG + + +L L +N + + +
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 203 PAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
F GL L+ L +++N++S + P SF+ L L
Sbjct: 96 ------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTS 130
Query: 263 LNLGGN 268
LNL N
Sbjct: 131 LNLASN 136
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
++ L LG N++ + L L+ L L N+I+ + G FE +LT L+L+ N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
LKR LT +P L+ + NL LEL N I + F+ L NL+S+ N+LR
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR 183
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+P +F +P L L L N + +V F L +
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
+ L L L N + +P LENL +E N++ + G F + L L LA NQ
Sbjct: 147 RNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 318 LRTIPPRVFAHLPLLNSLELDGN 340
L+++P +F L L + L N
Sbjct: 206 LKSVPDGIFDRLTSLQKIWLHTN 228
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
+ S+ F L+ LE + NKL + P G KLK+LNL N+L VP +L +
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQM-PRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Query: 284 LRKLELLHN 292
L+K+ L N
Sbjct: 220 LQKIWLHTN 228
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
KLK+LNL N+L VP +L +L+K+ L N
Sbjct: 195 KLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
T ++L +++N+++ +EP F L +L RL+L N+LT +P KL L +L L N+
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
+ I G F+ L +L + L +N
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
++ G L VP T + + L L NRI +E G F+ L L L L +NQL +P
Sbjct: 14 VDCSGKSLASVP-TGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
VF L L L L+ N + ++ AF L +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRS 103
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ + L L N +T++ +L L +L+L +N++ ++ G F+ L L L L
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 315 HNQLRTIPPRVFAHLPLLNSLEL 337
NQL++IP F +L L + L
Sbjct: 87 DNQLKSIPRGAFDNLRSLTHIWL 109
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
++ G L VP T + + L L NRI +E G F+ LT+LDL N L V+P
Sbjct: 14 VDCSGKSLASVP-TGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 202 S 202
+
Sbjct: 71 A 71
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLHNLDSLVLAHNQLRTI 321
L+ +L VPQ SL L L+L HN ++ L E L NL SL+L+HN L I
Sbjct: 23 LSCSKQQLPNVPQ-SLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
F +P L L+L NH+HT+D FS L+A
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
T ++L +++N+++ +EP F L +L RL+L N+LT +P KL L +L L N+
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
+ I G F+ L +L + L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
++ G L VP T + + L L N+I +E G F+ L L L L +NQL +P
Sbjct: 14 VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
VF L L L L+ N + ++ AF L++
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ + L L N++T++ +L L +L+L +N++ ++ G F+ L L L L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 315 HNQLRTIPPRVFAHLPLLNSLEL 337
NQL++IP F +L L + L
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWL 109
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
++ G L VP T + + L L N+I +E G F+ LT+LDL N L V+P
Sbjct: 14 VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 202 S 202
+
Sbjct: 71 A 71
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
GL + +K L+L N +T + + L + NL+ L L N I IEE F L +L+ L L+
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 353
+N L + F L L L L GN T+ + + FS L
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 282 ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341
E ++ L+L +NRI I D + NL +LVL N + TI F+ L L L+L N+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 342 IHTVDPAAFSGLEA 355
+ + + F L +
Sbjct: 112 LSNLSSSWFKPLSS 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ +K L+L N +T + + L + NL+ L L N I IEE F +L LDLS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L+ L S+ F+ L +L L + N + S
Sbjct: 112 LS------------------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147
Query: 257 EKKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
KL+ L +G + T++ + + L L +LE+ + + E + + N+ L+L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 316 NQ 317
Q
Sbjct: 208 KQ 209
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
T ++L +++N+++ +EP F L +L RL+L N+LT +P KL L +L L N+
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
+ I G F+ L +L + L +N
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
++ G L VP T + + L L N+I +E G F+ L L L L +NQL +P
Sbjct: 22 VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
VF L L L L+ N + ++ AF L++
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 111
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ + L L N++T++ +L L +L+L +N++ ++ G F+ L L L L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 315 HNQLRTIPPRVFAHLPLLNSLEL 337
NQL++IP F +L L + L
Sbjct: 95 DNQLKSIPRGAFDNLKSLTHIWL 117
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
++ G L VP T + + L L N+I +E G F+ LT+LDL N L V+P
Sbjct: 22 VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 202 S 202
+
Sbjct: 79 A 79
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
GL + +K L+L N +T + + L + NL+ L L N I IEE F L +L+ L L+
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 353
+N L + F L L L L GN T+ + + FS L
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 122
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 282 ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341
E ++ L+L +NRI I D + NL +LVL N + TI F+ L L L+L N+
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 342 IHTVDPAAFSGLEA 355
+ + + F L +
Sbjct: 86 LSNLSSSWFKPLSS 99
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQ 194
+ + +K L+L N +T + + L + NL+ L L N I IEE F +L LDLS
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
N L+ L S+ F+ L +L L + N + S
Sbjct: 84 NYLS------------------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 119
Query: 255 GLEKKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
KL+ L +G + T++ + + L L +LE+ + + E + + N+ L+L
Sbjct: 120 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Query: 314 AHNQ 317
Q
Sbjct: 180 HMKQ 183
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 163 NLRKLELLHNRIALIE---EGDFEGKALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXX 219
+L+ L L N +A +E E K LT +D+S+NS +P
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 421
Query: 220 XXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
+HS TLEIL + N L+ F +LK L + N+L +P SL
Sbjct: 422 ----IHSVTGCIPKTLEILDVSNNNLN-----LFSLNLPQLKELYISRNKLMTLPDASL- 471
Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
L L L++ N++ + +G F+ L +L + L N PR+
Sbjct: 472 -LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 249 EPD--SFKGLEKK-LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+PD +FKGLE +K +L +++ + ++ S +L +L L N I I++ F GL
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
+L L L NQL+++P +F L L + L N
Sbjct: 323 THLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEGLHNLDSLVLA 314
L + ++L N + + +TS S+L++L+ L++ L I F GL +L L L
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+NQ + F L L L L ++ D A SG
Sbjct: 88 YNQFLQLETGAFNGLANLEVLTLTQCNL---DGAVLSG 122
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 32/128 (25%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK----KLKRLNLGGNELTRVPQTSL 278
+ +N F+GL +L IL + N+ +E +F GL L + NL G
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG----------- 117
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLEL 337
A++ F+ L +L+ LVL N ++ I P F ++ + L+L
Sbjct: 118 ----------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 338 DGNHIHTV 345
N + ++
Sbjct: 162 TFNKVKSI 169
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
L F L L+ L + N+L + F L +L L+LG N+LT +P +L +
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L++L + N++ + G E L +L L L NQL++IP F L L L GN
Sbjct: 114 LKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%)
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
N + L L N+I +E G F+ L NL L L NQL +P VF L L L+L N +
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 343 HTVDPAAFSGL 353
+ A F L
Sbjct: 101 TVLPSAVFDRL 111
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ + L L N++T++ L NL++L L N++ + G F+ L L L L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHI 342
NQL +P VF L L L + N +
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA 198
+L L+LG N+LT +P +L +L++L + N++ + G LT L L QN L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 199 VVP 201
+P
Sbjct: 149 SIP 151
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
++L L +N+I +E G F+ L NL L N+L IP VF L L L+L+ NH+ +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 345 VDPAAFSGLEA 355
+ AF L++
Sbjct: 96 IPRGAFDNLKS 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
G+ +RL L N++T++ L NL++L N++ I G F+ L L L L
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGN 340
N L++IP F +L L + L N
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+RL L N++T++ L NL++L N++ I G F+ LTQLDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 200 VPSPA 204
+P A
Sbjct: 96 IPRGA 100
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+H+ F L L L + +++ I D+F+ +L L L GN L + +TSL+ +
Sbjct: 44 TIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQS-HHQLSTLVLTGNPLIFMAETSLNGPK 102
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNH 341
+L+ L L+ I+ +E L NL+SL L N + +I P+ F L L+ N
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARN-LKVLDFQNNA 161
Query: 342 IHTVDPAAFSGLEAKV 357
IH + LE +
Sbjct: 162 IHYISREDMRSLEQAI 177
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEGLHNLDSLVLAHNQL 318
L+ LNL NE + + + L L+L R+ + + F+ LH L L L + L
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 319 RTIPPRVFAHLPLLNSLELDGNHI 342
T + A LP+L L L GNH
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DL 192
I +K+L+LG L KL NL+ L+L HN I + + K L+ L +L
Sbjct: 329 IRGNVKKLHLGVG--------CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 193 SQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNA----FQGLDTLEILTIFENKLSLI 248
S N + S A LH NA FQ L L++L + L
Sbjct: 381 SHNEPLGLQSQAFKECPQLELLDLAFTR---LHINAPQSPFQNLHFLQVLNLTYCFLDTS 437
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGL 305
GL L+ LNL GN T + L+ + LE+L + I++ F L
Sbjct: 438 NQHLLAGL-PVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSL 496
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
+ + L+HN L +HL + L L N I+ + P
Sbjct: 497 GKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISP 537
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 25/115 (21%)
Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP----- 322
N L + + S+L NL L+L +I I E F+ H L +LVL N L +
Sbjct: 40 NFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLN 99
Query: 323 -PRVFAHLPL------------------LNSLELDGNHIHTVD-PAAFSGLEAKV 357
P+ HL L L SL L NHI ++ P F KV
Sbjct: 100 GPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKV 154
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
LK LNL NEL+++ + + NL +L L+ N I I+ F + K L LDLS N L+
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
AL S +L+ L + N++ P F +
Sbjct: 140 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 199
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
+ L + LG LT L+ ++R L L +++++ F GL NL
Sbjct: 200 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 257
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L++N L + FA LP L L+ N+I + + GL
Sbjct: 258 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 300
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
F L L + N +S +EP+ + L LK LNL NEL+++ + + NL +L
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELH 108
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L+ N I I+ F NL +L L+HN L +
Sbjct: 109 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
LNL N+L R+P + ++ L L++ N I+ +E + L L L L HN+L +
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAF 350
+ FA L L L N I + F
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPF 122
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGL---------------------------EKKL 260
+FQ L LE L + +N + I+ + F GL L
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 388
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGLHNLDSLVLAHNQLR 319
LNL N+++++ + S L +L L+L N I G ++ GL N+ + L++N+
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 448
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 353
+ FA +P L L L + VD P+ F L
Sbjct: 449 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 484
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR-VPQTSLSKLENLRKLELLHNR 293
L IL + +NK+S IE D+F L L+ L+LG NE+ + + LEN+ ++ L +N+
Sbjct: 388 LHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 446
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+ F + +L L+L L+ + P F L L L+L N+I ++
Sbjct: 447 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 506
Query: 352 GLE 354
GLE
Sbjct: 507 GLE 509
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
N+ L L HNQLR +P F L SL++ N I ++P
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
LK LNL NEL+++ + + NL +L L+ N I I+ F + K L LDLS N L+
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
AL S +L+ L + N++ P F +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
+ L + LG LT L+ ++R L L +++++ F GL NL
Sbjct: 195 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L++N L + FA LP L L+ N+I + + GL
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
F L L + N +S +EP+ + L LK LNL NEL+++ + + NL +L
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L+ N I I+ F NL +L L+HN L +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
LNL N+L R+P + ++ L L++ N I+ +E + L L L L HN+L +
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAF 350
+ FA L L L N I + F
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPF 117
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGL---------------------------EKKL 260
+FQ L LE L + +N + I+ + F GL L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGLHNLDSLVLAHNQLR 319
LNL N+++++ + S L +L L+L N I G ++ GL N+ + L++N+
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 353
+ FA +P L L L + VD P+ F L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR-VPQTSLSKLENLRKLELLHNR 293
L IL + +NK+S IE D+F L L+ L+LG NE+ + + LEN+ ++ L +N+
Sbjct: 383 LHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+ F + +L L+L L+ + P F L L L+L N+I ++
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 352 GLE 354
GLE
Sbjct: 502 GLE 504
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
N+ L L HNQLR +P F L SL++ N I ++P
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
LK LNL NEL+++ + + NL +L L+ N I I+ F + K L LDLS N L+
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
AL S +L+ L + N++ P F +
Sbjct: 145 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 204
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
+ L + LG LT L+ ++R L L +++++ F GL NL
Sbjct: 205 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 262
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L++N L + FA LP L L+ N+I + + GL
Sbjct: 263 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 305
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
F L L + N +S +EP+ + L LK LNL NEL+++ + + NL +L
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELH 113
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L+ N I I+ F NL +L L+HN L +
Sbjct: 114 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L + LNL N+L R+P + ++ L L++ N I+ +E + L L L L H
Sbjct: 33 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
N+L + + FA L L L N I + F
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGL---------------------------EKKL 260
+FQ L LE L + +N + I+ + F GL L
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 393
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGLHNLDSLVLAHNQLR 319
LNL N+++++ + S L +L L+L N I G ++ GL N+ + L++N+
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 453
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 353
+ FA +P L L L + VD P+ F L
Sbjct: 454 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR-VPQTSLSKLENLRKLELLHNR 293
L IL + +NK+S IE D+F L L+ L+LG NE+ + + LEN+ ++ L +N+
Sbjct: 393 LHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 451
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+ F + +L L+L L+ + P F L L L+L N+I ++
Sbjct: 452 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 511
Query: 352 GLE 354
GLE
Sbjct: 512 GLE 514
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 17/220 (7%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DL 192
I KRL LG L LENLR+L+L H+ I + + + + L+ L +L
Sbjct: 332 IKGNTKRLELGTG--------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 193 SQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNA-FQGLDTLEILTIFENKLSLIEPD 251
S N + + A + + FQ L L++L + + L +
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLHNL 308
F GL L+ LNL GN + + L+ L +LE+L ++ I++ F L +
Sbjct: 444 LFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
+ + L+HN+L + +HL + L L NHI + P+
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 25/120 (20%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
L N L + T+ S+L NL L+L +I I E F+ H LD+LVL N L +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 323 ------PRVFAHL-------------PL-----LNSLELDGNHIHTVD-PAAFSGLEAKV 357
P+ HL PL L SL L NHI ++ P F + KV
Sbjct: 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 33/157 (21%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+ + F L L L + ++ I D+F+ + +L L L N L + +T+LS +
Sbjct: 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPK 105
Query: 283 NLRKLELLHNRIALIEEGDFEGLHN---LDSLVLAHNQLRTIP-PRVF--AHLPLLN--- 333
L+ L + I+ I DF LHN L+SL L N + +I P+ F L +L+
Sbjct: 106 ALKHLFFIQTGISSI---DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162
Query: 334 --------------------SLELDGNHIHTVDPAAF 350
SL L+GN I ++P AF
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 30/208 (14%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELL--HNRIALIEEGDFEGKALTQLDL--S 193
+KLK L+ N + + + +S L+ L L N IA IE G F+ L+ +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 194 QNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253
QN L + +L F+ +D +I P F
Sbjct: 213 QNLLVIFKG-------------LKNSTIQSLWLGTFEDMDDEDI-----------SPAVF 248
Query: 254 KGL-EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV 312
+GL E ++ +NL + + + L++L+L ++ + G GL L LV
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLV 307
Query: 313 LAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L+ N+ + ++ P L L + GN
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 7/214 (3%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQLDL 192
I RL L N+L +P KL L KL L N ++ + DF +L LDL
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 193 SQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
S N + + S + F L L L I +
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 253 FKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
F GL L+ L + GN +P ++L NL L+L ++ + F L +L
Sbjct: 146 FNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
L ++HN ++ + L L L+ NHI T
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 17/212 (8%)
Query: 138 KKLKRL----NLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQL 190
K LKRL N GGN + V L +L L+L N ++ + DF +L L
Sbjct: 325 KSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 191 DLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEP 250
DLS N + + S + F L L L I +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 251 DSFKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
F GL L+ L + GN +P ++L NL L+L ++ + F L +L
Sbjct: 439 GIFNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L +A NQL+++P +F L L + L N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 89
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+L AF GL +L+ L E L+ +E L K
Sbjct: 90 -----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KT 125
Query: 260 LKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
LK LN+ N + ++P+ S L NL L+L N+I I D LH +
Sbjct: 126 LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L N +++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 321 IPPRVFAHLPLLNSL 335
+ F+ L L L
Sbjct: 91 LALGAFSGLSSLQKL 105
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ L+L N + + F L L L+ +++TI + L L++L L GN I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 345 VDPAAFSGLEA 355
+ AFSGL +
Sbjct: 91 LALGAFSGLSS 101
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
++ L+L N+I I GD NL L+L +++ TI F L L L+L NH+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 344 TVDPAAFSGLEA 355
++ + F L +
Sbjct: 88 SLSSSWFGPLSS 99
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXA 223
++ L+L N+I I GD A Q+ + ++S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----------------------RINT 64
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL-SKLE 282
+ +AF L +LE L + +N LS + F L LK LNL GN + TSL L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 283 NLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHNQLR 319
NL+ L + + + I DF GL +L+ L + LR
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
TLE+L + N L DSF +L+ L + N+L +P SL + L +++ N+
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQ 484
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
+ + +G F+ L +L + L N PR+
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
++ L+L N+I I GD NL L+L +++ TI F L L L+L NH+
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 344 TVDPAAFSGLEA 355
++ + F L +
Sbjct: 114 SLSSSWFGPLSS 125
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXA 223
++ L+L N+I I GD A Q+ + ++S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----------------------RINT 90
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL-SKLE 282
+ +AF L +LE L + +N LS + F L LK LNL GN + TSL L
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT 149
Query: 283 NLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHNQLR 319
NL+ L + + + I DF GL +L+ L + LR
Sbjct: 150 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 187
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
TLE+L + N L DSF +L+ L + N+L +P SL + L +++ N+
Sbjct: 458 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQ 510
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
+ + +G F+ L +L + L N PR+
Sbjct: 511 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 542
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 281 LENLRKLELLHNRIALIEEGD---FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L++ R++ELL+ IEE D F H + L + N +R +PP VF ++PLL L L
Sbjct: 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130
Query: 338 DGNHIHTVDPAAF 350
+ N + ++ F
Sbjct: 131 ERNDLSSLPRGIF 143
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
DSF+ +E LNL ++ + + + ++KL + N I + F+ + L
Sbjct: 72 DSFRQVE----LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
LVL N L ++P +F + P L +L + N++ ++ F
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 90
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEK 258
+L AF GL +L+ L E L+ +E +F G K
Sbjct: 91 -----------------------SLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLK 125
Query: 259 KLKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN--------- 307
LK LN+ N + ++P+ S L NL L+L N+I I D LH
Sbjct: 126 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 308 ------------------LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P +F L L + L N
Sbjct: 185 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL------- 84
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
GN I ++ AFSGL +
Sbjct: 85 -----------------TGNPIQSLALGAFSGLSS 102
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 91
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEK 258
+L AF GL +L+ L E L+ +E +F G K
Sbjct: 92 -----------------------SLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLK 126
Query: 259 KLKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN--------- 307
LK LN+ N + ++P+ S L NL L+L N+I I D LH
Sbjct: 127 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 308 ------------------LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P +F L L + L N
Sbjct: 186 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL------- 85
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
GN I ++ AFSGL +
Sbjct: 86 -----------------TGNPIQSLALGAFSGLSS 103
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 281 LENLRKLELLHNRIALIEEGD---FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L++ R++ELL+ IEE D F H + L + N +R +PP VF ++PLL L L
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 338 DGNHIHTVDPAAF 350
+ N + ++ F
Sbjct: 125 ERNDLSSLPRGIF 137
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
DSF+ +E LNL ++ + + + ++KL + N I + F+ + L
Sbjct: 66 DSFRQVE----LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
LVL N L ++P +F + P L +L + N++ ++ F
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL 287
AF T++ L + N + + P F+ + L L L N+L+ +P+ L L
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146
Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+ +N + IE+ F+ +L +L L+ N+L
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
+ KLS + D + K ++L N L + S S L+ L+L I IE+
Sbjct: 20 DQKLSKVPDD----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
+ GLH+L +L+L N +++ P F+ L L +L
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
+L++VP S +N+ +L N + +++ F L L L+ ++ TI + +
Sbjct: 22 KLSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLEA 355
L L++L L GN I + P +FSGL +
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTS 105
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 80/209 (38%), Gaps = 29/209 (13%)
Query: 140 LKRLNLGGNELTRVPQTSLSKL--ENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
L L+L N L+ S S L +LR L+L N A+I +F G + L LD ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST 410
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L V + AF L+ L L I + F GL
Sbjct: 411 LKRVTEFS-----------------------AFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 257 EKKLKRLNLGGNEL-TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L L + GN + NL L+L ++ I G F+ LH L L ++H
Sbjct: 448 -TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
N L + + L L++L+ N I T
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
+ KLS + D + K ++L N L + S S L+ L+L I IE+
Sbjct: 15 DQKLSKVPDD----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 70
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
+ GLH+L +L+L N +++ P F+ L L +L
Sbjct: 71 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 104
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
+L++VP S +N+ +L N + +++ F L L L+ ++ TI + +
Sbjct: 17 KLSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 73
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLEA 355
L L++L L GN I + P +FSGL +
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTS 100
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 80/209 (38%), Gaps = 29/209 (13%)
Query: 140 LKRLNLGGNELTRVPQTSLSKL--ENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
L L+L N L+ S S L +LR L+L N A+I +F G + L LD ++
Sbjct: 347 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST 405
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L V + AF L+ L L I + F GL
Sbjct: 406 LKRVTEFS-----------------------AFLSLEKLLYLDISYTNTKIDFDGIFLGL 442
Query: 257 EKKLKRLNLGGNEL-TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L L + GN + NL L+L ++ I G F+ LH L L ++H
Sbjct: 443 -TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
N L + + L L++L+ N I T
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIET 530
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 91
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEK 258
+L AF GL +L+ L E L+ +E +F G K
Sbjct: 92 -----------------------SLALGAFSGLSSLQKLVALETNLASLE--NFPIGHLK 126
Query: 259 KLKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN--------- 307
LK LN+ N + ++P+ S L NL L+L N+I I D LH
Sbjct: 127 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 308 ------------------LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P +F L L + L N
Sbjct: 186 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ L+L N + + F L L L+ +++TI + L L++L L GN I +
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 345 VDPAAFSGLEA 355
+ AFSGL +
Sbjct: 93 LALGAFSGLSS 103
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 58/219 (26%)
Query: 136 IGKKLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQ 194
+G+K++ + +G N L P +TSL K + L LE L+N++ EGK
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQL--------EGK--------- 345
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
+P AF L L + N+++ I P +F
Sbjct: 346 -----LP--------------------------AFGSEIKLASLNLAYNQITEI-PANFC 373
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENL-RKLELLHNRIALIEEGDFEGLH------- 306
G ++++ L+ N+L +P +K ++ ++ +N I ++ +F+ L
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
N+ S+ L++NQ+ P +F+ L+S+ L GN + +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEI 472
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 34/197 (17%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKAL---TQLDLSQN 195
KL LNL N++T +P E + L HN++ I F+ K++ + +D S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVXSAIDFSYN 412
Query: 196 SLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ V L F+G++ I + N++S P
Sbjct: 413 EIGSVDG----------------KNFDPLDPTPFKGINVSSI-NLSNNQISKF-PKELFS 454
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLEN--------LRKLELLHNRIALIEEGDFEG--L 305
L +NL GN LT +P+ SL K EN L ++L N++ + + DF L
Sbjct: 455 TGSPLSSINLXGNXLTEIPKNSL-KDENENFKNTYLLTSIDLRFNKLTKLSD-DFRATTL 512
Query: 306 HNLDSLVLAHNQLRTIP 322
L + L++N P
Sbjct: 513 PYLVGIDLSYNSFSKFP 529
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 137 GKKLKRLNLGGNELTRVPQTSLSKLEN--------LRKLELLHNRIALIEEGDFEGKALT 188
G L +NL GN LT +P+ SL K EN L ++L N++ + + DF L
Sbjct: 456 GSPLSSINLXGNXLTEIPKNSL-KDENENFKNTYLLTSIDLRFNKLTKLSD-DFRATTLP 513
Query: 189 QL---DLSQNSLAVVPS 202
L DLS NS + P+
Sbjct: 514 YLVGIDLSYNSFSKFPT 530
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 89
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEK 258
+L AF GL +L+ L E L+ +E +F G K
Sbjct: 90 -----------------------SLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLK 124
Query: 259 KLKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN--------- 307
LK LN+ N + ++P+ S L NL L+L N+I I D LH
Sbjct: 125 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 308 ------------------LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P +F L L + L N
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL------- 83
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
GN I ++ AFSGL +
Sbjct: 84 -----------------TGNPIQSLALGAFSGLSS 101
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 90
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEK 258
+L AF GL +L+ L E L+ +E +F G K
Sbjct: 91 -----------------------SLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLK 125
Query: 259 KLKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN--------- 307
LK LN+ N + ++P+ S L NL L+L N+I I D LH
Sbjct: 126 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 308 ------------------LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P +F L L + L N
Sbjct: 185 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ L+L N + + F L L L+ +++TI + L L++L L GN I +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 345 VDPAAFSGLEA 355
+ AFSGL +
Sbjct: 92 LALGAFSGLSS 102
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 19/229 (8%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DL 192
I +++L+LG TR L KLENL+KL+L H+ I + + + K L L +L
Sbjct: 331 IKGNMRKLDLG----TRC----LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 193 SQNSLAVVPSPAXXX--XXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEP 250
S N + A A HS FQ L L +L + L
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS-PFQNLHLLRVLNLSHCLLDTSNQ 441
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLHN 307
GL+ L+ LNL GN + + L+ + LE+L + I++ F GL N
Sbjct: 442 HLLAGLQD-LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356
++ L L+HN L +HL L L + N+I + P L +
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQ 548
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
+ + F L L L + +++ + D+F+ +L + L GN L + +TSL+ +
Sbjct: 46 TIQNTTFSRLINLIFLDLTRCQINWVHEDTFQS-HHQLNTIVLTGNPLIFMAETSLTGPK 104
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI------PPRVFAHLPLLN--- 333
L+ L L I+ +E L NL+SL L N + +I P + L N
Sbjct: 105 FLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAI 164
Query: 334 -----------------SLELDGNHIHTVDPAAF 350
SL +GN I ++P AF
Sbjct: 165 HYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAF 198
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Query: 238 LTIFENKLSLIEP--------------------DSFKGLEKKLKRLNLGGNELTRVPQTS 277
LT+F N+++ I+P + GL L++LN N++T +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL-TSLQQLNFSSNQVTDLK--P 168
Query: 278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 338 DGNHIHTV 345
+GN + +
Sbjct: 225 NGNQLKDI 232
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------L 278
LT+F N+++ I+P K L L RL L N ++ + S L
Sbjct: 112 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L+
Sbjct: 169 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 339 GNHIHTV 345
GN + +
Sbjct: 225 GNQLKDI 231
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------L 278
LT+F N+++ I+P K L L RL L N ++ + S L
Sbjct: 117 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L+
Sbjct: 174 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229
Query: 339 GNHIHTV 345
GN + +
Sbjct: 230 GNQLKDI 236
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------L 278
LT+F N+++ I+P K L L RL L N ++ + S L
Sbjct: 116 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 172
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L+
Sbjct: 173 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 228
Query: 339 GNHIHTV 345
GN + +
Sbjct: 229 GNQLKDI 235
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------L 278
LT+F N+++ I+P K L L RL L N ++ + S L
Sbjct: 112 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L+
Sbjct: 169 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 339 GNHIHTV 345
GN + +
Sbjct: 225 GNQLKDI 231
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 25/107 (23%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
T ++L ++ N+++ +EP F L +L LNL N+LT +P
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSL-TQLTYLNLAVNQLTALP------------------- 80
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
G F+ L L L L NQL++IP VF +L L + L N
Sbjct: 81 -----VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
L L N+I +E G F+ L L L LA NQL +P VF L L L L N + ++
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 347 PAAFSGLEA 355
F L++
Sbjct: 105 MGVFDNLKS 113
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+L LNL N+LT +P KL L L L N++ I G F+ K+LT + L N
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------- 277
LT+F N+++ I+P K L L RL L N ++ + S
Sbjct: 112 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 338 DGNHIHTV 345
+GN + +
Sbjct: 225 NGNQLKDI 232
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS-------------------- 277
LT+F N+++ I+P K L L RL L N ++ + S
Sbjct: 112 LTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L+ L L +L++ N+++ I L NL+SL+ +NQ+ I P L L+ L L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 338 DGNHIHTV 345
+GN + +
Sbjct: 225 NGNQLKDI 232
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L RL L GN LT +P + L NLR L+L HNR+ + + L N +
Sbjct: 249 LTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT 306
Query: 320 TIPPRVFAHLPLLNSLELDGN 340
T+P F +L L L ++GN
Sbjct: 307 TLPWE-FGNLCNLQFLGVEGN 326
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
L RL L GN LT +P + L NLR L+L HNR+
Sbjct: 249 LTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRL 282
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
K L +K LN+ N ++ + + + L LR L + HNRI ++ F+ L+ L L
Sbjct: 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 314 AHNQLRTI---PPRVFAHLPL 331
+HN+L I P HL L
Sbjct: 77 SHNKLVKISCHPTVNLKHLDL 97
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
+ +L+ L I +N +S E K L LN+ N LT L ++ L+L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
N+I I + + L L L +A NQL+++P +F L L + L N
Sbjct: 431 NKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQ 194
+ +K LN+ N ++ + + + L LR L + HNRI ++ F+ + L LDLS
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 195 NSLAVV 200
N L +
Sbjct: 79 NKLVKI 84
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
K L + K L+L N ++ + +S L LR L L HNRI ++ F +L+ L +
Sbjct: 48 KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107
Query: 314 AHNQLRTI 321
+HN+L+ I
Sbjct: 108 SHNRLQNI 115
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
+ + +LE L + N L+ D + + LNL N LT L ++ L+L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDL 457
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
+NRI I + D L L L +A NQL+++P VF L L + L N P
Sbjct: 458 HNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 113
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+L AF GL +L+ L E L+ +E L K
Sbjct: 114 -----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KT 149
Query: 260 LKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
LK LN+ N + ++P+ S L NL L+L N+I I D LH +
Sbjct: 150 LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 82/216 (37%), Gaps = 17/216 (7%)
Query: 138 KKLKRL----NLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQL 190
K LKRL N GGN + V L +L L+L N ++ + DF +L L
Sbjct: 349 KSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402
Query: 191 DLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEP 250
DLS N + + S + F L L L I +
Sbjct: 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462
Query: 251 DSFKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
F GL L+ L + GN +P ++L NL L+L ++ + F L +L
Sbjct: 463 GIFNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
L ++HN ++ + L L L+ NHI T
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L N +++
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 321 IPPRVFAHLPLLNSL 335
+ F+ L L L
Sbjct: 115 LALGAFSGLSSLQKL 129
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ L+L N + + F L L L+ +++TI + L L++L L GN I +
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 345 VDPAAFSGLEA 355
+ AFSGL +
Sbjct: 115 LALGAFSGLSS 125
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAV 199
K L+L N L + S L+ L+L I IE+G ++ + L+ L L+ N +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 89
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+L AF GL +L+ L E L+ +E L K
Sbjct: 90 -----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KT 125
Query: 260 LKRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
LK LN+ N + ++P+ S L NL L+L N+I I D LH +
Sbjct: 126 LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 82/216 (37%), Gaps = 17/216 (7%)
Query: 138 KKLKRL----NLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQL 190
K LKRL N GGN + V L +L L+L N ++ + DF +L L
Sbjct: 325 KSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 191 DLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEP 250
DLS N + + S + F L L L I +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 251 DSFKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
F GL L+ L + GN +P ++L NL L+L ++ + F L +L
Sbjct: 439 GIFNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
L ++HN ++ + L L L+ NHI T
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
K L+L N L + S L+ L+L I IE+G ++ L +L +L+L N +++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 321 IPPRVFAHLPLLNSL 335
+ F+ L L L
Sbjct: 91 LALGAFSGLSSLQKL 105
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L+L E+ + + L +L L L N I + G F GL +L LV L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
++ HL L L + N I + P FS L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
+ L+L N + + F L L L+ +++TI + L L++L L GN I +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 345 VDPAAFSGLEA 355
+ AFSGL +
Sbjct: 91 LALGAFSGLSS 101
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
L L I NK++ + P L +L L +G N+++ + ++ L L+ L + N+I
Sbjct: 223 LNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI 277
Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 349
+ I L L+SL L +NQL V L L +L L NHI + P A
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
K K L L N + ++ +SLS +ENLR L L N I IE D L +L +S N +
Sbjct: 49 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 106
Query: 198 A 198
A
Sbjct: 107 A 107
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K K L L N + ++ +SLS +ENLR L L N I IE D L+ L +++NQ
Sbjct: 49 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVA-DTLEELWISYNQ 105
Query: 318 LRTI 321
+ ++
Sbjct: 106 IASL 109
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLH----------NLDSLVL------AHNQLRTIP 322
+ L++LR LL N + +E D LH +L+ L+L +HN+LR +P
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP 479
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAA 349
P A L L L+ N + VD A
Sbjct: 480 P-ALAALRCLEVLQASDNALENVDGVA 505
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLH----------NLDSLVL------AHNQLRTIP 322
+ L++LR LL N + +E D LH +L+ L+L +HN+LR +P
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP 479
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAA 349
P A L L L+ N + VD A
Sbjct: 480 P-ALAALRCLEVLQASDNALENVDGVA 505
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
K K L L N + ++ +SLS +ENLR L L N I IE D L +L +S N +
Sbjct: 48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105
Query: 198 A 198
A
Sbjct: 106 A 106
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K K L L N + ++ +SLS +ENLR L L N I IE D L+ L +++NQ
Sbjct: 48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVA-DTLEELWISYNQ 104
Query: 318 LRTI 321
+ ++
Sbjct: 105 IASL 108
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
+GL L LTI ++ L + PD+F +L RLNL N L + ++ L +L++L
Sbjct: 52 LRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTVQGL-SLQELV 109
Query: 289 L----LHNRIAL--IEEGDFEGL 305
L LH AL ++ + EGL
Sbjct: 110 LSGNPLHCSCALRWLQRWEEEGL 132
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 18/197 (9%)
Query: 80 TMTTLKSKSGLIIFYLKLRHNNLP-KLTGFI-FFGLDIRHLTIHNXXXXXXXXXXXXXIG 137
T+T+L S SGL + + P K++G + L++ L+ ++
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+LK L + GN+++ +S+ NL L++ N + + AL LD+S N L
Sbjct: 178 GELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQG------LDTLEILTIFENKLSLIEPD 251
+ S A + SN F G L +L+ L++ ENK + PD
Sbjct: 236 SGDFSRAISTCTELKLLN--------ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD 287
Query: 252 SFKGLEKKLKRLNLGGN 268
G L L+L GN
Sbjct: 288 FLSGACDTLTGLDLSGN 304
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 18/197 (9%)
Query: 80 TMTTLKSKSGLIIFYLKLRHNNLP-KLTGFI-FFGLDIRHLTIHNXXXXXXXXXXXXXIG 137
T+T+L S SGL + + P K++G + L++ L+ ++
Sbjct: 115 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 174
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+LK L + GN+++ +S+ NL L++ N + + AL LD+S N L
Sbjct: 175 GELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 198 AVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQG------LDTLEILTIFENKLSLIEPD 251
+ S A + SN F G L +L+ L++ ENK + PD
Sbjct: 233 SGDFSRAISTCTELKLLN--------ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD 284
Query: 252 SFKGLEKKLKRLNLGGN 268
G L L+L GN
Sbjct: 285 FLSGACDTLTGLDLSGN 301
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
LVL N L ++PP F HLP L + L N
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|4F2H|A Chain A, Structure Of The Minimal Ste5 Vwa Domain Subject To
Autoinhibition By The Ste5 Ph Domain
Length = 207
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL----NSLELD-GNHIHTVD 346
+ +A+I + DF L DSL++ +N L+ + + FA L N+ LD G+ +H +D
Sbjct: 28 DNLAIILQIDFTKLKEEDSLIVVYNSLKALTIK-FARLQFCFVDRNNYVLDYGSVLHKID 86
Query: 347 P-AAFSGLEAK 356
+ S L++K
Sbjct: 87 SLDSISNLKSK 97
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L L L L L +N+I I L LD+L L NQ+R I P A L L +L L
Sbjct: 128 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYL 183
Query: 338 DGNHIHTVDPAAFSGLE 354
NHI D A GL+
Sbjct: 184 SKNHIS--DLRALRGLK 198
>pdb|3FZE|A Chain A, Structure Of The 'minimal Scaffold' (Ms) Domain Of Ste5
That Cocatalyzes Fus3 Phosphorylation By Ste7
Length = 196
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL----NSLELD-GNHIHTVD 346
+ +A+I + DF L DSL++ +N L+ + + FA L N+ LD G+ +H +D
Sbjct: 18 DNLAIILQIDFTKLKEEDSLIVVYNSLKALTIK-FARLQFCFVDRNNYVLDYGSVLHKID 76
Query: 347 P-AAFSGLEAK 356
+ S L++K
Sbjct: 77 SLDSISNLKSK 87
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTS-LSKLENL 284
KGL KL+ L+L N L R PQ L +++NL
Sbjct: 268 KGLPAKLRVLDLSSNRLNRAPQPDELPEVDNL 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,730,882
Number of Sequences: 62578
Number of extensions: 306693
Number of successful extensions: 1377
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 436
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)