Query psy15002
Match_columns 357
No_of_seqs 306 out of 4080
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:58:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 3.2E-38 1.1E-42 297.9 24.1 296 46-356 2-322 (477)
2 3v47_A TOLL-like receptor 5B a 100.0 1.5E-36 5.2E-41 284.7 24.7 293 45-356 2-397 (455)
3 3zyj_A Leucine-rich repeat-con 100.0 4.1E-36 1.4E-40 280.5 24.3 262 41-343 29-292 (440)
4 3zyi_A Leucine-rich repeat-con 100.0 3.1E-35 1.1E-39 275.5 24.2 260 43-343 42-303 (452)
5 1xku_A Decorin; proteoglycan, 100.0 3.4E-34 1.1E-38 257.6 23.0 288 44-356 22-321 (330)
6 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-34 6.2E-39 259.5 20.9 287 44-356 24-322 (332)
7 2z80_A TOLL-like receptor 2, v 100.0 4.1E-35 1.4E-39 266.0 15.4 288 43-347 20-318 (353)
8 3t6q_A CD180 antigen; protein- 100.0 4.8E-34 1.6E-38 277.1 23.6 282 46-343 3-338 (606)
9 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-33 3.6E-38 275.8 25.9 158 55-222 26-186 (635)
10 2z66_A Variable lymphocyte rec 100.0 3.1E-34 1.1E-38 255.1 19.5 288 47-353 1-297 (306)
11 2ft3_A Biglycan; proteoglycan, 100.0 9.4E-33 3.2E-37 248.4 22.0 276 67-353 9-287 (332)
12 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-33 2.6E-37 272.2 21.5 290 55-356 1-355 (680)
13 1xku_A Decorin; proteoglycan, 100.0 5.5E-32 1.9E-36 243.2 24.5 253 91-353 32-286 (330)
14 3vq2_A TLR4, TOLL-like recepto 100.0 3E-32 1E-36 264.5 24.1 157 55-221 6-165 (606)
15 1ozn_A Reticulon 4 receptor; N 100.0 5.6E-32 1.9E-36 238.1 23.1 236 46-319 1-238 (285)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.7E-32 2E-36 260.2 23.8 129 56-198 28-159 (562)
17 3o6n_A APL1; leucine-rich repe 100.0 2.9E-32 9.9E-37 250.6 20.1 259 90-354 45-342 (390)
18 2id5_A Lingo-1, leucine rich r 100.0 8.3E-32 2.9E-36 254.0 23.7 259 94-356 15-298 (477)
19 3v47_A TOLL-like receptor 5B a 100.0 2E-31 6.8E-36 249.9 24.1 256 90-347 54-412 (455)
20 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-32 2.3E-36 271.1 21.9 289 55-356 1-364 (844)
21 3zyj_A Leucine-rich repeat-con 100.0 3.5E-31 1.2E-35 247.2 23.9 216 138-356 64-281 (440)
22 3oja_B Anopheles plasmodium-re 100.0 2E-31 6.7E-36 258.0 20.7 259 90-354 51-348 (597)
23 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-31 4.2E-36 238.9 17.7 269 55-346 33-308 (313)
24 2z63_A TOLL-like receptor 4, v 100.0 1.5E-31 5.2E-36 257.6 19.2 163 55-227 2-167 (570)
25 3zyi_A Leucine-rich repeat-con 100.0 9.5E-31 3.3E-35 245.0 24.0 216 138-356 75-292 (452)
26 3t6q_A CD180 antigen; protein- 100.0 1.1E-30 3.8E-35 253.5 25.0 262 90-354 254-524 (606)
27 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-30 2.5E-34 251.0 25.5 261 90-351 329-605 (680)
28 2z81_A CD282 antigen, TOLL-lik 100.0 7E-31 2.4E-35 251.9 17.8 171 69-247 12-210 (549)
29 2z62_A TOLL-like receptor 4, v 100.0 1.4E-29 4.7E-34 221.7 21.2 204 140-345 30-239 (276)
30 3rgz_A Protein brassinosteroid 100.0 5.3E-30 1.8E-34 254.9 20.5 90 259-348 633-722 (768)
31 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-30 1.1E-34 229.6 17.1 239 113-356 50-293 (313)
32 3o6n_A APL1; leucine-rich repe 100.0 1.1E-29 3.8E-34 233.4 20.9 248 90-346 69-355 (390)
33 2z80_A TOLL-like receptor 2, v 100.0 4.2E-30 1.4E-34 233.0 15.5 258 94-356 35-303 (353)
34 3rgz_A Protein brassinosteroid 100.0 7.2E-30 2.5E-34 253.9 18.4 261 91-353 270-537 (768)
35 3o53_A Protein LRIM1, AGAP0063 100.0 2.1E-30 7.3E-35 231.4 13.0 248 92-354 12-262 (317)
36 1wwl_A Monocyte differentiatio 100.0 2.4E-31 8E-36 237.1 6.4 246 90-345 43-311 (312)
37 2z66_A Variable lymphocyte rec 100.0 3.8E-29 1.3E-33 222.2 20.0 249 93-345 10-263 (306)
38 2z7x_B TOLL-like receptor 1, v 100.0 9.6E-30 3.3E-34 242.5 16.2 124 65-199 3-129 (520)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-29 2.7E-33 238.3 22.2 145 93-245 34-181 (562)
40 2xwt_C Thyrotropin receptor; s 100.0 5.8E-29 2E-33 213.1 18.2 195 139-340 32-236 (239)
41 3oja_B Anopheles plasmodium-re 100.0 7.3E-29 2.5E-33 240.0 20.6 247 90-345 75-360 (597)
42 2z63_A TOLL-like receptor 4, v 100.0 1.3E-28 4.3E-33 237.2 21.0 127 229-356 392-520 (570)
43 4eco_A Uncharacterized protein 100.0 9.3E-29 3.2E-33 240.7 19.9 274 76-354 290-590 (636)
44 2z7x_B TOLL-like receptor 1, v 100.0 6.6E-29 2.3E-33 236.7 18.4 126 93-223 3-129 (520)
45 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-29 2.2E-33 249.5 19.1 258 89-355 265-551 (844)
46 3vq2_A TLR4, TOLL-like recepto 100.0 2E-28 6.9E-33 237.6 21.8 248 90-344 307-559 (606)
47 4fmz_A Internalin; leucine ric 100.0 3E-28 1E-32 220.3 21.1 242 90-347 66-328 (347)
48 4g8a_A TOLL-like receptor 4; l 100.0 5.9E-28 2E-32 235.2 24.8 152 94-248 35-188 (635)
49 4eco_A Uncharacterized protein 100.0 4.4E-29 1.5E-33 243.1 15.7 261 90-356 206-538 (636)
50 4fmz_A Internalin; leucine ric 100.0 6.5E-28 2.2E-32 218.0 20.5 237 90-343 88-346 (347)
51 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.2E-32 209.7 22.3 225 116-345 14-240 (285)
52 4ecn_A Leucine-rich repeat pro 100.0 5.5E-28 1.9E-32 240.2 20.2 261 90-356 448-778 (876)
53 3oja_A Leucine-rich immune mol 100.0 2.4E-28 8.1E-33 230.4 16.0 225 114-353 35-261 (487)
54 2o6q_A Variable lymphocyte rec 100.0 3.2E-27 1.1E-31 206.0 21.8 201 114-319 17-218 (270)
55 4ay9_X Follicle-stimulating ho 100.0 1.9E-28 6.6E-33 221.7 14.4 249 46-316 1-256 (350)
56 3g06_A SSPH2 (leucine-rich rep 100.0 6.7E-28 2.3E-32 232.2 16.9 257 55-353 34-307 (622)
57 2o6q_A Variable lymphocyte rec 100.0 3.7E-27 1.3E-31 205.6 19.7 199 95-297 21-220 (270)
58 3o53_A Protein LRIM1, AGAP0063 100.0 8.6E-29 3E-33 221.0 9.5 246 89-349 33-282 (317)
59 4ecn_A Leucine-rich repeat pro 100.0 2.1E-27 7.2E-32 236.1 20.3 269 76-350 532-826 (876)
60 1o6v_A Internalin A; bacterial 100.0 3.8E-27 1.3E-31 221.4 20.4 237 90-345 68-324 (466)
61 4fcg_A Uncharacterized protein 100.0 2.5E-27 8.6E-32 212.3 17.1 244 89-353 80-324 (328)
62 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-28 2.6E-32 230.8 14.0 176 95-273 10-211 (549)
63 1o6v_A Internalin A; bacterial 99.9 1.1E-26 3.7E-31 218.4 21.2 192 139-346 178-369 (466)
64 4fcg_A Uncharacterized protein 99.9 3.1E-27 1.1E-31 211.8 16.4 214 138-356 81-303 (328)
65 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-26 1.8E-30 212.5 23.3 230 90-347 64-303 (457)
66 3oja_A Leucine-rich immune mol 99.9 2.9E-27 9.8E-32 223.0 13.7 257 66-338 11-270 (487)
67 2z62_A TOLL-like receptor 4, v 99.9 4.3E-26 1.5E-30 199.4 19.4 231 55-320 2-238 (276)
68 3rfs_A Internalin B, repeat mo 99.9 2E-26 6.9E-31 201.1 16.8 206 138-354 41-246 (272)
69 2xwt_C Thyrotropin receptor; s 99.9 2.3E-26 7.7E-31 196.9 15.7 199 150-356 23-231 (239)
70 1p9a_G Platelet glycoprotein I 99.9 1.4E-25 4.9E-30 197.3 21.0 198 114-319 11-208 (290)
71 1p9a_G Platelet glycoprotein I 99.9 1.9E-25 6.5E-30 196.6 20.7 198 92-296 12-209 (290)
72 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-25 1.4E-29 206.6 23.3 226 90-344 42-268 (457)
73 3m19_A Variable lymphocyte rec 99.9 3.9E-25 1.4E-29 190.6 19.8 177 139-319 15-192 (251)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.8E-29 209.8 24.4 230 90-356 40-286 (622)
75 1wwl_A Monocyte differentiatio 99.9 3E-27 1E-31 210.5 4.9 231 114-356 44-298 (312)
76 3rfs_A Internalin B, repeat mo 99.9 2.9E-25 1E-29 193.7 16.3 203 139-347 20-222 (272)
77 1jl5_A Outer protein YOPM; leu 99.9 1.8E-24 6.2E-29 202.0 21.6 198 66-297 75-272 (454)
78 1h6u_A Internalin H; cell adhe 99.9 6.2E-25 2.1E-29 195.1 16.9 191 139-345 42-232 (308)
79 4ay9_X Follicle-stimulating ho 99.9 6.4E-25 2.2E-29 198.6 16.2 239 93-340 12-256 (350)
80 1jl5_A Outer protein YOPM; leu 99.9 1.2E-24 4.1E-29 203.2 16.4 201 116-347 74-274 (454)
81 4glp_A Monocyte differentiatio 99.9 3.7E-25 1.3E-29 196.8 12.0 228 111-345 62-309 (310)
82 3m19_A Variable lymphocyte rec 99.9 2E-24 6.7E-29 186.2 16.1 156 140-296 37-193 (251)
83 1h6u_A Internalin H; cell adhe 99.9 1.2E-23 4E-28 186.8 16.7 193 114-323 42-234 (308)
84 3goz_A Leucine-rich repeat-con 99.9 5E-25 1.7E-29 200.3 5.5 251 95-345 3-299 (362)
85 2o6s_A Variable lymphocyte rec 99.9 2.5E-23 8.6E-28 174.1 14.1 130 138-268 28-158 (208)
86 2xot_A Amphoterin-induced prot 99.9 1.7E-23 5.7E-28 190.1 14.0 191 40-271 5-202 (361)
87 4fdw_A Leucine rich hypothetic 99.9 9.8E-22 3.4E-26 180.1 23.9 248 94-354 117-369 (401)
88 2o6s_A Variable lymphocyte rec 99.9 9.2E-23 3.1E-27 170.6 14.3 170 141-321 10-180 (208)
89 2v9t_B SLIT homolog 2 protein 99.9 6.2E-23 2.1E-27 173.1 12.7 163 44-246 2-165 (220)
90 4glp_A Monocyte differentiatio 99.9 5.9E-23 2E-27 182.6 12.8 225 90-320 64-308 (310)
91 3cvr_A Invasion plasmid antige 99.9 1.2E-22 4.2E-27 193.3 15.8 177 114-319 60-243 (571)
92 2xot_A Amphoterin-induced prot 99.9 1.6E-22 5.5E-27 183.6 14.4 174 141-342 21-201 (361)
93 1h6t_A Internalin B; cell adhe 99.9 4.5E-22 1.5E-26 175.1 14.2 192 117-325 28-219 (291)
94 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.8E-28 191.4 2.0 231 117-348 2-271 (362)
95 2v70_A SLIT-2, SLIT homolog 2 99.9 1.8E-21 6.1E-26 164.1 15.1 129 116-245 35-165 (220)
96 2ca6_A RAN GTPase-activating p 99.9 3.8E-24 1.3E-28 196.1 -1.9 231 114-346 33-319 (386)
97 2v9t_B SLIT homolog 2 protein 99.9 3.8E-21 1.3E-25 162.1 16.6 150 166-318 15-164 (220)
98 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-24 1.9E-28 199.6 -2.2 256 90-346 28-329 (461)
99 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-23 6.1E-28 196.1 1.1 260 90-351 56-362 (461)
100 2ast_B S-phase kinase-associat 99.9 4.2E-23 1.4E-27 185.6 2.3 252 92-352 49-315 (336)
101 3cvr_A Invasion plasmid antige 99.9 7.4E-21 2.5E-25 181.1 16.6 184 91-302 60-250 (571)
102 1h6t_A Internalin B; cell adhe 99.9 7.9E-21 2.7E-25 167.1 15.6 172 114-300 47-218 (291)
103 1m9s_A Internalin B; cell inva 99.9 5.8E-21 2E-25 183.6 15.8 196 115-327 23-218 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.9 1.4E-20 4.9E-25 158.6 16.2 153 164-319 13-166 (220)
105 3sb4_A Hypothetical leucine ri 99.8 2.6E-21 8.7E-26 173.4 10.8 234 113-356 49-323 (329)
106 4fdw_A Leucine rich hypothetic 99.8 1.6E-19 5.4E-24 165.5 22.5 244 90-345 135-385 (401)
107 3e6j_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 157.2 16.5 155 162-320 19-173 (229)
108 3e6j_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 155.9 16.6 153 140-297 21-174 (229)
109 2ast_B S-phase kinase-associat 99.8 7.6E-22 2.6E-26 177.3 4.0 232 90-327 70-314 (336)
110 1m9s_A Internalin B; cell inva 99.8 8.6E-21 2.9E-25 182.5 11.6 194 94-303 25-218 (605)
111 3sb4_A Hypothetical leucine ri 99.8 3.1E-20 1.1E-24 166.4 13.5 237 90-337 49-328 (329)
112 1xeu_A Internalin C; cellular 99.8 4.6E-21 1.6E-25 166.1 7.8 173 138-325 19-191 (263)
113 1xeu_A Internalin C; cellular 99.8 3E-20 1E-24 160.9 10.1 171 114-300 20-190 (263)
114 2ca6_A RAN GTPase-activating p 99.8 1.6E-21 5.3E-26 178.8 1.4 244 73-323 20-320 (386)
115 4ezg_A Putative uncharacterize 99.8 1.7E-19 5.7E-24 149.4 10.3 84 161-247 43-126 (197)
116 4ezg_A Putative uncharacterize 99.8 2.6E-19 8.9E-24 148.2 11.2 152 184-344 43-195 (197)
117 2wfh_A SLIT homolog 2 protein 99.8 4.2E-18 1.4E-22 140.4 12.7 107 139-246 32-139 (193)
118 1w8a_A SLIT protein; signaling 99.8 1.2E-17 4.2E-22 137.5 14.8 108 140-247 31-140 (192)
119 2o6r_A Variable lymphocyte rec 99.7 1.1E-17 3.8E-22 135.9 12.8 109 139-247 29-138 (177)
120 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.6E-22 135.6 15.0 129 188-320 11-140 (192)
121 1dce_A Protein (RAB geranylger 99.7 4.1E-20 1.4E-24 176.7 -4.0 178 160-349 347-552 (567)
122 2wfh_A SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 134.4 14.3 127 188-319 13-139 (193)
123 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.6E-23 171.9 5.2 192 90-292 173-369 (727)
124 1dce_A Protein (RAB geranylger 99.7 1.1E-20 3.8E-25 180.6 -8.7 187 138-337 349-567 (567)
125 2o6r_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 131.3 14.6 128 188-319 10-137 (177)
126 2ell_A Acidic leucine-rich nuc 99.7 2E-17 6.7E-22 133.2 9.4 135 209-347 24-164 (168)
127 4b8c_D Glucose-repressible alc 99.7 1.3E-18 4.4E-23 171.3 2.2 219 114-343 174-404 (727)
128 2ell_A Acidic leucine-rich nuc 99.7 5.6E-17 1.9E-21 130.6 9.0 116 205-323 45-164 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.7 8.4E-17 2.9E-21 130.6 6.6 131 208-343 18-153 (176)
130 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.9E-21 125.0 7.4 128 209-339 17-149 (149)
131 4fs7_A Uncharacterized protein 99.6 1.8E-14 6.2E-19 132.1 21.6 77 277-356 292-368 (394)
132 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-16 9.7E-21 127.4 7.6 86 159-247 16-102 (176)
133 3ogk_B Coronatine-insensitive 99.6 1.2E-17 4E-22 161.4 -1.2 211 138-350 293-533 (592)
134 2je0_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 122.0 7.5 55 259-313 89-147 (149)
135 3ogk_B Coronatine-insensitive 99.6 1.1E-17 3.8E-22 161.6 -3.4 150 138-290 164-326 (592)
136 3g39_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 119.2 12.1 85 138-222 30-115 (170)
137 3g39_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 118.4 12.2 107 235-345 11-117 (170)
138 4gt6_A Cell surface protein; l 99.6 1.4E-13 4.6E-18 126.2 22.3 95 258-356 265-359 (394)
139 4h09_A Hypothetical leucine ri 99.6 3.6E-13 1.2E-17 122.7 23.6 251 90-354 46-356 (379)
140 2r9u_A Variable lymphocyte rec 99.6 2.1E-15 7.1E-20 122.0 7.7 104 95-201 17-121 (174)
141 2r9u_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 116.5 12.4 104 212-319 15-118 (174)
142 2p1m_B Transport inhibitor res 99.6 4.4E-17 1.5E-21 157.4 -4.0 35 185-219 289-324 (594)
143 4gt6_A Cell surface protein; l 99.6 4.2E-13 1.4E-17 122.9 22.2 242 92-342 66-369 (394)
144 4fs7_A Uncharacterized protein 99.6 2.4E-13 8.3E-18 124.5 19.9 244 101-356 58-345 (394)
145 2p1m_B Transport inhibitor res 99.5 1.6E-16 5.5E-21 153.5 -3.7 37 207-243 287-324 (594)
146 4h09_A Hypothetical leucine ri 99.5 7.6E-12 2.6E-16 113.9 24.0 230 114-356 47-335 (379)
147 1ds9_A Outer arm dynein; leuci 99.5 7.8E-17 2.7E-21 133.4 -8.3 134 204-345 43-187 (198)
148 1ds9_A Outer arm dynein; leuci 99.4 2.2E-16 7.5E-21 130.7 -9.8 136 207-348 16-158 (198)
149 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.5E-17 117.5 11.9 114 47-199 1-117 (347)
150 2ifg_A High affinity nerve gro 99.4 1.5E-12 5.1E-17 117.1 11.5 105 212-320 11-117 (347)
151 3un9_A NLR family member X1; l 99.4 7.5E-15 2.6E-19 133.1 -5.8 182 161-343 71-283 (372)
152 3un9_A NLR family member X1; l 99.3 1.7E-14 6E-19 130.7 -4.5 181 138-319 72-283 (372)
153 2ra8_A Uncharacterized protein 98.8 7.8E-10 2.7E-14 99.4 2.4 78 138-217 139-227 (362)
154 2ra8_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 94.2 6.1 178 158-341 135-341 (362)
155 3rfe_A Platelet glycoprotein I 98.4 3.9E-07 1.3E-11 69.1 5.5 38 138-175 31-68 (130)
156 1io0_A Tropomodulin; LRR prote 98.3 6.8E-08 2.3E-12 78.4 0.1 13 139-151 37-50 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 8.9E-08 3E-12 77.7 0.6 38 209-246 93-136 (185)
158 3rw6_A Nuclear RNA export fact 98.1 1.3E-06 4.4E-11 74.6 2.6 63 231-295 168-233 (267)
159 3rw6_A Nuclear RNA export fact 98.0 3.3E-07 1.1E-11 78.3 -1.5 61 258-319 170-233 (267)
160 3e4g_A ATP synthase subunit S, 98.0 9.5E-07 3.3E-11 70.1 0.5 82 234-316 62-149 (176)
161 3e4g_A ATP synthase subunit S, 97.9 3.8E-06 1.3E-10 66.7 2.9 84 210-293 62-150 (176)
162 3rfe_A Platelet glycoprotein I 97.7 4.6E-05 1.6E-09 57.6 6.0 56 261-319 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00022 7.4E-09 57.7 2.7 17 230-246 67-83 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00015 5.1E-09 58.6 1.6 114 228-342 36-169 (197)
165 2lz0_A Uncharacterized protein 90.3 0.55 1.9E-05 33.0 5.4 49 267-316 5-53 (100)
166 2lz0_A Uncharacterized protein 88.4 1.4 4.7E-05 30.9 6.3 48 243-292 6-53 (100)
167 1ans_A Neurotoxin III; NMR {An 23.4 48 0.0016 16.2 1.6 17 45-61 9-25 (27)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=297.91 Aligned_cols=296 Identities=26% Similarity=0.416 Sum_probs=257.7
Q ss_pred CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002 46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS 124 (357)
Q Consensus 46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~ 124 (357)
.||. .|.|.... ..+.|...+++.+|..+ +..++.|++++|.++.+++..|... +|++|++++|.
T Consensus 2 ~Cp~-----~C~C~~~~--~~v~c~~~~l~~ip~~~-------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 67 (477)
T 2id5_A 2 GCPP-----RCECSAQD--RAVLCHRKRFVAVPEGI-------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67 (477)
T ss_dssp CCST-----TCEEETTT--TEEECCSCCCSSCCSCC-------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cccC-----CCeECCCC--CEEEeCCCCcCcCCCCC-------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc
Confidence 6999 69997643 38999999998887532 5788999999999999998888777 89999999999
Q ss_pred cceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCcc
Q psy15002 125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSP 203 (357)
Q Consensus 125 l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~ 203 (357)
++.+.+.+|..+ ++|++|++++|.++.++...|.++++|++|++++|.++.+++..+. +++|++|++++|.+..+.+.
T Consensus 68 i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 68 VSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCEECTTTTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCEeChhhhhCC-ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 999999999988 6799999999999999998899999999999999999988766554 49999999999999999988
Q ss_pred ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcccccc-----------------------ccc
Q psy15002 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE-----------------------KKL 260 (357)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-----------------------~~L 260 (357)
.|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+..+.+..|..+. .+|
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 899999999999999999988887888888999999998888877665554441 256
Q ss_pred cEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCC
Q psy15002 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340 (357)
Q Consensus 261 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N 340 (357)
+.|++++|.++.++...+..+++|++|++++|.++.+++..+.++++|+.|++++|+++++++..+.++++|+.|+|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 66666777788777667888999999999999999999988999999999999999999998888899999999999999
Q ss_pred cccccCcccccCcccc
Q psy15002 341 HIHTVDPAAFSGLEAK 356 (357)
Q Consensus 341 ~l~~~~~~~~~~l~~l 356 (357)
.++++++..|..+++|
T Consensus 307 ~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 307 QLTTLEESVFHSVGNL 322 (477)
T ss_dssp CCSCCCGGGBSCGGGC
T ss_pred cCceeCHhHcCCCccc
Confidence 9999999988887654
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-36 Score=284.69 Aligned_cols=293 Identities=22% Similarity=0.362 Sum_probs=220.1
Q ss_pred cCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC
Q psy15002 45 QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS 123 (357)
Q Consensus 45 ~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~ 123 (357)
.+||. .|.|... .+.|...+++.+|. + +..+++|++++|.++.+++..|... +|++|++++|
T Consensus 2 ~p~~~-----~c~~~~~----~~~c~~~~l~~lp~-l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 64 (455)
T 3v47_A 2 DPGTS-----ECSVIGY----NAICINRGLHQVPE-L-------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ 64 (455)
T ss_dssp ----------CCEEETT----EEECCSSCCSSCCC-C-------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC
T ss_pred CCccc-----eeEEEcc----ccCcCCCCcccCCC-C-------CCccCEEEecCCccCcCChhHhccCccccEEECcCC
Confidence 45777 6999754 89999999988885 2 4788999999999999977777766 8999999999
Q ss_pred Ccc-eecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc-ccCC--CCCCCCCCeEECCCCCCee
Q psy15002 124 SLA-VVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEG--DFEGKALTQLDLSQNSLAV 199 (357)
Q Consensus 124 ~l~-~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~~~L~~L~l~~n~l~~ 199 (357)
.+. .+++..|.++ ++|++|++++|.++.+.+..|.++++|++|++++|.++. ++.. +...++|++|++++|.+..
T Consensus 65 ~~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 65 TPGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp STTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS
T ss_pred cccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc
Confidence 886 6777788887 679999999999999988889999999999999999985 3332 4445899999999999988
Q ss_pred eCccc-cCCCCcCceeecccccCcccCcccCCCC----------------------------------CCCCEEEccCC-
Q psy15002 200 VPSPA-LKSLNHLLILNLNHNKISALHSNAFQGL----------------------------------DTLEILTIFEN- 243 (357)
Q Consensus 200 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l----------------------------------~~L~~L~L~~n- 243 (357)
+.+.. +..+++|++|++++|.+..+.+..+..+ ++|+.|++++|
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 86654 7888889999998888776655433221 33444444444
Q ss_pred --------------------------------------------------------------cCcccCCCcccccccccc
Q psy15002 244 --------------------------------------------------------------KLSLIEPDSFKGLEKKLK 261 (357)
Q Consensus 244 --------------------------------------------------------------~l~~~~~~~~~~~~~~L~ 261 (357)
+++...+..+..+ ++|+
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 302 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLE 302 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCC
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCC
Confidence 4444444455555 6777
Q ss_pred EEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCc
Q psy15002 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341 (357)
Q Consensus 262 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~ 341 (357)
.|++++|.++++++..+..+++|++|++++|.++++++..+.++++|+.|++++|+++++++..+.++++|+.|++++|+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 77777777777766667777777777777777777777777777777777777777777777667777777788888777
Q ss_pred ccccCcccccCcccc
Q psy15002 342 IHTVDPAAFSGLEAK 356 (357)
Q Consensus 342 l~~~~~~~~~~l~~l 356 (357)
+++++++.|..+++|
T Consensus 383 l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 383 LKSVPDGIFDRLTSL 397 (455)
T ss_dssp CSCCCTTTTTTCTTC
T ss_pred cccCCHhHhccCCcc
Confidence 777777776666544
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=280.54 Aligned_cols=262 Identities=29% Similarity=0.497 Sum_probs=171.0
Q ss_pred cccccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEe
Q psy15002 41 LQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTI 120 (357)
Q Consensus 41 ~~~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l 120 (357)
.+.+..||. .|.|.... ..+.|...+++.+|..+ +.. ++.|++
T Consensus 29 ~~~~~~Cp~-----~C~C~~~~--~~v~c~~~~l~~iP~~~-------~~~-----------------------l~~L~L 71 (440)
T 3zyj_A 29 TGSAQTCPS-----VCSCSNQF--SKVICVRKNLREVPDGI-------STN-----------------------TRLLNL 71 (440)
T ss_dssp ----CCCCS-----SSEECTTS--CEEECCSCCCSSCCSCC-------CTT-----------------------CSEEEC
T ss_pred CcccccCCC-----CCEeCCCC--CEEEeCCCCcCcCCCCC-------CCC-----------------------CcEEEc
Confidence 344568998 69997543 37889887777666322 233 444555
Q ss_pred cCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCee
Q psy15002 121 HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199 (357)
Q Consensus 121 ~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~ 199 (357)
++|.++.+....|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|++..
T Consensus 72 ~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 72 HENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred cCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 5555555554455544 45666666666666666666666666777777666666666654433 666777777777666
Q ss_pred eCccccCCCCcCceeeccc-ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccc
Q psy15002 200 VPSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL 278 (357)
Q Consensus 200 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (357)
+++..|..+++|++|++++ +.+..+++..|.++++|+.|++++|+++.++ .+..+ ++|+.|++++|.++.+++..+
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPL-IKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTC-SSCCEEECTTSCCCEECTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCC-cccCEEECCCCccCccChhhh
Confidence 6666666677777777766 4555565556666777777777777766653 24444 567777777777777666667
Q ss_pred cCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343 (357)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~ 343 (357)
..+++|++|++++|+++.+++..|.++++|+.|+|++|+++.+++..+..+++|+.|+|++|+|.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777777777777777666777777777777777777777766667777777777777653
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=3.1e-35 Score=275.54 Aligned_cols=260 Identities=27% Similarity=0.486 Sum_probs=175.7
Q ss_pred cccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecC
Q psy15002 43 SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN 122 (357)
Q Consensus 43 ~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 122 (357)
....||. .|.|.... ..+.|...+++.+|..+ +..+ ++|++++
T Consensus 42 ~~~~Cp~-----~C~C~~~~--~~v~c~~~~l~~iP~~~-------~~~l-----------------------~~L~L~~ 84 (452)
T 3zyi_A 42 GPQNCPS-----VCSCSNQF--SKVVCTRRGLSEVPQGI-------PSNT-----------------------RYLNLME 84 (452)
T ss_dssp --CCCCT-----TSEECSSS--CEEECCSSCCSSCCSCC-------CTTC-----------------------SEEECCS
T ss_pred CcCCCCC-----CCEECCCC--cEEEECCCCcCccCCCC-------CCCc-----------------------cEEECcC
Confidence 3568998 69997542 37889888877666321 2344 4555555
Q ss_pred CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeC
Q psy15002 123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVP 201 (357)
Q Consensus 123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 201 (357)
|.++.+.+..|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|+++.++
T Consensus 85 n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 85 NNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp SCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 55555544455544 4577777777777766666666777777777777777766666444 366777777777777776
Q ss_pred ccccCCCCcCceeeccc-ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002 202 SPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280 (357)
Q Consensus 202 ~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (357)
...|..+++|+.|++++ +.+..++...|.++++|+.|++++|+++.++ .+..+ ++|+.|++++|.++++++..+..
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPL-VGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTC-TTCCEEECTTSCCSEECGGGGTT
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--ccccc-ccccEEECcCCcCcccCcccccC
Confidence 66677777777777776 4566666666677777777777777776653 24444 57777777777777776667777
Q ss_pred CCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002 281 LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343 (357)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~ 343 (357)
+++|+.|++++|+++.+++..|.++++|+.|+|++|+++++++..+..+++|+.|+|++|+|.
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777777777777777777777777777777777777777777777777777777777777654
No 5
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.4e-34 Score=257.60 Aligned_cols=288 Identities=21% Similarity=0.376 Sum_probs=247.0
Q ss_pred ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecC
Q psy15002 44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHN 122 (357)
Q Consensus 44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~ 122 (357)
...||. .|.|... .+.|...+++.+|.. .+..+++|++++|.++.++...|... +|++|++++
T Consensus 22 ~~~cp~-----~c~c~l~----~l~~~~~~l~~lp~~-------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (330)
T 1xku_A 22 GPVCPF-----RCQCHLR----VVQCSDLGLEKVPKD-------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85 (330)
T ss_dssp CCCCCT-----TCEEETT----EEECTTSCCCSCCCS-------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCCC-----CCcCCCe----EEEecCCCccccCcc-------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC
Confidence 457998 6999765 899998888776643 24678999999999999999877766 899999999
Q ss_pred CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCee--
Q psy15002 123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAV-- 199 (357)
Q Consensus 123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~-- 199 (357)
|.++.+.+..+..+ ++|++|++++|.++.++...+ ++|++|++++|.++.+++..+. .++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 86 NKISKISPGAFAPL-VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SCCCCBCTTTTTTC-TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CcCCeeCHHHhcCC-CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 99999988888887 679999999999998876543 7899999999999988876544 5999999999999975
Q ss_pred eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279 (357)
Q Consensus 200 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 279 (357)
+.+..+..+++|++|++++|.++.++...+ ++|+.|++++|+++.+.+..+..+ ++|+.|++++|.++.+++..+.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGG
T ss_pred cChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhcc
Confidence 566788899999999999999998755432 799999999999999988888888 8999999999999999887888
Q ss_pred CCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC------CCCCcEEeCCCCcccc--cCccccc
Q psy15002 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH------LPLLNSLELDGNHIHT--VDPAAFS 351 (357)
Q Consensus 280 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~N~l~~--~~~~~~~ 351 (357)
.+++|++|++++|.++.++. .+..+++|+.|++++|+++++++..|.. .+.++.+++++|++.. +.+..|.
T Consensus 238 ~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 99999999999999998876 5778999999999999999999877753 3788999999999865 7788888
Q ss_pred Ccccc
Q psy15002 352 GLEAK 356 (357)
Q Consensus 352 ~l~~l 356 (357)
.++.+
T Consensus 317 ~~~~l 321 (330)
T 1xku_A 317 CVYVR 321 (330)
T ss_dssp TCCCG
T ss_pred cccce
Confidence 76643
No 6
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.8e-34 Score=259.54 Aligned_cols=287 Identities=25% Similarity=0.410 Sum_probs=248.3
Q ss_pred ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecC
Q psy15002 44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHN 122 (357)
Q Consensus 44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~ 122 (357)
...||. .|.|... .+.|...+++.+|..+ +..+++|++++|.++.+++..|... +|++|++++
T Consensus 24 ~~~cp~-----~c~c~l~----~l~~~~~~l~~ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 24 SAMCPF-----GCHCHLR----VVQCSDLGLKAVPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp -CCCCS-----SCEEETT----EEECCSSCCSSCCSCC-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCCC-----CCcccCC----EEECCCCCccccCCCC-------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence 456887 6999765 8999988887776432 4678999999999999988777776 899999999
Q ss_pred CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCee--
Q psy15002 123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAV-- 199 (357)
Q Consensus 123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~-- 199 (357)
|.++.+.+..+..+ ++|++|++++|.++.++...+ ++|++|++++|.++.+++..+. .++|++|++++|.++.
T Consensus 88 n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 88 NKISKIHEKAFSPL-RKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SCCCEECGGGSTTC-TTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CccCccCHhHhhCc-CCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 99999988888888 679999999999998887643 7999999999999999887554 5999999999999974
Q ss_pred eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279 (357)
Q Consensus 200 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 279 (357)
+.+..+..+ +|+.|++++|+++.++...+ ++|+.|++++|.++.+.+..+..+ ++|+.|++++|.++.+++..+.
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhh
Confidence 566677777 99999999999998755432 799999999999999988888888 8999999999999999988899
Q ss_pred CCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC------CCCCcEEeCCCCccc--ccCccccc
Q psy15002 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH------LPLLNSLELDGNHIH--TVDPAAFS 351 (357)
Q Consensus 280 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~N~l~--~~~~~~~~ 351 (357)
.+++|++|++++|+++.++. .+..+++|+.|++++|+++.++...|.. .+.|+.+++++|++. ++.+..|.
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 99999999999999998877 4778999999999999999999877665 367899999999998 78899998
Q ss_pred Ccccc
Q psy15002 352 GLEAK 356 (357)
Q Consensus 352 ~l~~l 356 (357)
.++.|
T Consensus 318 ~l~~L 322 (332)
T 2ft3_A 318 CVTDR 322 (332)
T ss_dssp TBCCS
T ss_pred ccchh
Confidence 88765
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=265.98 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=241.1
Q ss_pred cccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEec
Q psy15002 43 SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIH 121 (357)
Q Consensus 43 ~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~ 121 (357)
.+..|+. .|.|.... .++|...+++++|..+ +..+++|++++|.++.++...|... +|++|+++
T Consensus 20 ~~~~~~~-----~~~C~~~~---~c~~~~~~l~~iP~~~-------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 84 (353)
T 2z80_A 20 EESSNQA-----SLSCDRNG---ICKGSSGSLNSIPSGL-------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84 (353)
T ss_dssp ------------CCEECTTS---EEECCSTTCSSCCTTC-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred ccCCCcc-----CCCCCCCe---EeeCCCCCcccccccc-------cccCcEEECCCCcCcccCHHHhccCCCCCEEECC
Confidence 3445666 57887654 5778888888877543 4678999999999999999777766 99999999
Q ss_pred CCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC-C-CCCCCCCCeEECCCC-CCe
Q psy15002 122 NSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE-G-DFEGKALTQLDLSQN-SLA 198 (357)
Q Consensus 122 ~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~n-~l~ 198 (357)
+|.++.+.+..+..+ ++|++|++++|.++.+++..+.++++|++|++++|.++.++. . +...++|++|++++| .+.
T Consensus 85 ~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 85 SNGINTIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp TSCCCEECTTTTTTC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCccCccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 999999998888888 679999999999999999889999999999999999999988 4 445699999999999 588
Q ss_pred eeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccc
Q psy15002 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL 278 (357)
Q Consensus 199 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 278 (357)
.+++..+.++++|++|++++|.+..+.+..+..+++|++|++++|+++.++...+..+ ++|+.|++++|.+++.+...+
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC--
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCcccccccccc
Confidence 8988899999999999999999999988999999999999999999987765555455 799999999999998765433
Q ss_pred c---CCCCCcEEEccCCcCcee----CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 279 S---KLENLRKLELLHNRIALI----EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 279 ~---~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
. ..+.++.++++++.+++. .+..+..+++|+.|++++|+++.+|...+.++++|+.|++++|++.+..+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2 456788899988887652 12356778999999999999999999888999999999999999987543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-34 Score=277.12 Aligned_cols=282 Identities=22% Similarity=0.322 Sum_probs=210.0
Q ss_pred CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002 46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS 124 (357)
Q Consensus 46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~ 124 (357)
.|+. .|.|..... .++|...+++++|..+ +..+++|++++|.++.+++..|... +|++|++++|.
T Consensus 3 ~~~~-----~C~~~~~~~--~~~c~~~~l~~iP~~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 68 (606)
T 3t6q_A 3 SSDQ-----KCIEKEVNK--TYNCENLGLNEIPGTL-------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68 (606)
T ss_dssp ---C-----CCEEEETTT--EEECTTSCCSSCCTTS-------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC
T ss_pred cccC-----ceecccCCc--eEECCCCCcccCcCCC-------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc
Confidence 5776 699976433 8999999998888543 5678999999999999988888777 99999999999
Q ss_pred cceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeCcc
Q psy15002 125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVPSP 203 (357)
Q Consensus 125 l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~ 203 (357)
+..+.+.+|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++. +...++|++|++++|++..++..
T Consensus 69 i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (606)
T 3t6q_A 69 IYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147 (606)
T ss_dssp CCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc
Confidence 999999999988 6799999999999999888999999999999999999988544 44559999999999999988655
Q ss_pred ccCCCCcCceeecccccCcccCcccCCCCCCCC--EEEccCCcCcccCCCccccc-------------------------
Q psy15002 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLE--ILTIFENKLSLIEPDSFKGL------------------------- 256 (357)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~------------------------- 256 (357)
.+..+++|++|++++|.+..+.+..+..+++|+ .|++++|.++.+.+..+...
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l 227 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEE
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccch
Confidence 666689999999999999988887788888888 78888888777655443220
Q ss_pred -------------------------cccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEe
Q psy15002 257 -------------------------EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311 (357)
Q Consensus 257 -------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 311 (357)
..+++.|++++|.++.+++..+..+++|++|++++|.++.++. .+.++++|+.|
T Consensus 228 ~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L 306 (606)
T 3t6q_A 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKL 306 (606)
T ss_dssp EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEE
T ss_pred hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEE
Confidence 0145556666666666655555666666666666666665544 34455566666
Q ss_pred ecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343 (357)
Q Consensus 312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~ 343 (357)
++++|+++++++..+..+++|+.|++++|.+.
T Consensus 307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred ECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 66666555554444444444555555544444
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-33 Score=275.77 Aligned_cols=158 Identities=25% Similarity=0.391 Sum_probs=137.6
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL 133 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~ 133 (357)
+|.|... ...++|...++++||..+ |..+++|+|++|.|+.+++..|... +|++|++++|.++.+++.+|
T Consensus 26 ~c~~~~~--~~~~~c~~~~l~~vP~~l-------p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 26 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp CSEEEET--TTEEECTTSCCSSCCSSS-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCC--CCEEECCCCCcCccCCCC-------CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence 6888754 348999999999988543 6789999999999999999999887 99999999999999999999
Q ss_pred ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVP-SPALKSLNHL 211 (357)
Q Consensus 134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~-~~~~~~l~~L 211 (357)
.++ ++|++|++++|+++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|.++.+. +..+..+++|
T Consensus 97 ~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 97 QSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 988 6799999999999999999999999999999999999999887654 489999999999988764 3566778888
Q ss_pred ceeecccccCc
Q psy15002 212 LILNLNHNKIS 222 (357)
Q Consensus 212 ~~L~l~~n~l~ 222 (357)
++|++++|+++
T Consensus 176 ~~L~L~~N~l~ 186 (635)
T 4g8a_A 176 EHLDLSSNKIQ 186 (635)
T ss_dssp CEEECCSSCCC
T ss_pred hhhcccCcccc
Confidence 88888877654
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=3.1e-34 Score=255.07 Aligned_cols=288 Identities=21% Similarity=0.325 Sum_probs=189.2
Q ss_pred CCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCc
Q psy15002 47 CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSL 125 (357)
Q Consensus 47 Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l 125 (357)
||. +|.|... .+.|...+++++|..+ +..+++|++++|.++.++...|... +|++|++++|.+
T Consensus 1 CP~-----~C~C~~~----~l~c~~~~l~~ip~~~-------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l 64 (306)
T 2z66_A 1 CPS-----RCSCSGT----EIRCNSKGLTSVPTGI-------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64 (306)
T ss_dssp CCT-----TCEEETT----EEECCSSCCSSCCSCC-------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CcC-----CCeeCCC----EEEcCCCCcccCCCCC-------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc
Confidence 888 6999865 8999988888777432 4677888888888888888777655 777777777777
Q ss_pred ceec--CcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCeeeC
Q psy15002 126 AVVE--ESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLAVVP 201 (357)
Q Consensus 126 ~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~ 201 (357)
+.+. +..+..+ ++|++|++++|.++.++.. +.++++|++|++++|.++.++. .+...++|++|++++|.+..+.
T Consensus 65 ~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 65 SFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CEEEEEEHHHHSC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CcccCcccccccc-cccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 6543 2233333 4577777777777766553 6677777777777777776654 3334467777777777777666
Q ss_pred ccccCCCCcCceeecccccCcc-cCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002 202 SPALKSLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280 (357)
Q Consensus 202 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (357)
+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|+++.+.+..+..+ ++|+.|++++|.++.+++..+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTT
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC-CCCCEEECCCCccCccChhhccC
Confidence 6666677777777777776665 345566667777777777777776666666665 56777777777777666655666
Q ss_pred CCCCcEEEccCCcCceeCcCcCCCCC-CCCEeecCCCcCcccCc--ccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002 281 LENLRKLELLHNRIALIEEGDFEGLH-NLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
+++|++|++++|.+++..+..+..++ +|+.|++++|.+..... +....+...+.+.+..+.+....|..+.+.
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 67777777777777766666666553 67777777776654321 111122333444455555555555555443
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.4e-33 Score=248.37 Aligned_cols=276 Identities=24% Similarity=0.350 Sum_probs=232.0
Q ss_pred EecccCChhhHHHHHhhh-ccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEc
Q psy15002 67 ILCEFTDNQKIQHTMTTL-KSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145 (357)
Q Consensus 67 ~~C~~~~l~~i~~~~~~~-~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~l 145 (357)
..+....+.++|..+... +......++.++++++.++.+|...+ .+++.|++++|.++.+.+..+..+ ++|++|++
T Consensus 9 ~~~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L 85 (332)
T 2ft3_A 9 TTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGL-QHLYALVL 85 (332)
T ss_dssp ----------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTC-TTCCEEEC
T ss_pred cccCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCC-CCCcEEEC
Confidence 344444555555443222 11111456789999999999998765 478999999999999998888888 67999999
Q ss_pred cCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc--
Q psy15002 146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA-- 223 (357)
Q Consensus 146 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 223 (357)
++|.++.+.+..|.++++|++|++++|.++.+|..++ ++|++|++++|++..+++..+..+++|+.|++++|.++.
T Consensus 86 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 9999999988899999999999999999999998877 799999999999999998889999999999999999964
Q ss_pred cCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303 (357)
Q Consensus 224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 303 (357)
..+..+..+ +|+.|++++|+++.++...+ ++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+.
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 667778777 99999999999998755432 6899999999999999988899999999999999999999988899
Q ss_pred CCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002 304 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
.+++|+.|++++|+++.+|.. +..+++|+.|++++|+++++++..|+..
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHcccc
Confidence 999999999999999998876 5789999999999999999999988764
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.6e-33 Score=272.19 Aligned_cols=290 Identities=27% Similarity=0.362 Sum_probs=213.6
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL 133 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~ 133 (357)
+|.|... .++|...+++++|..+ +..+++|++++|.++.++...|... +|++|++++|.++.+.+.++
T Consensus 1 ~C~~~~~----~~~cs~~~L~~ip~~~-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 1 KCTVSHE----VADCSHLKLTQVPDDL-------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp ---CBSS----EEECCSSCCSSCCSCS-------CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred CceeECC----eeECCCCCcccccccc-------CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence 4888743 8999999998877432 4789999999999999999888776 89999999999999998888
Q ss_pred ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCc
Q psy15002 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLL 212 (357)
Q Consensus 134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 212 (357)
..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ .+++|++|++++|.++.+++..+.++++|+
T Consensus 70 ~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 70 QKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred hcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 888 679999999999999998889999999999999999999886654 459999999999999988888888999999
Q ss_pred eeecccccCcccCcccCC--CCCCCCEEEccCCcCcccCCCcccccc--------------------------cc-----
Q psy15002 213 ILNLNHNKISALHSNAFQ--GLDTLEILTIFENKLSLIEPDSFKGLE--------------------------KK----- 259 (357)
Q Consensus 213 ~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------~~----- 259 (357)
+|++++|.++.+.+..+. .+++|+.|++++|.++++.+..+..+. ++
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 999999988877665443 446788888888777766554433210 12
Q ss_pred ---------------------ccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcC
Q psy15002 260 ---------------------LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318 (357)
Q Consensus 260 ---------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 318 (357)
|+.|++++|.++.+++..+..+++|++|++++|.++++.+..+.++++|+.|++++|..
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 55555555555555555555555566666666555555554455555555555544322
Q ss_pred c---------ccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 319 R---------TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 319 ~---------~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
. .+....+..+++|+.|++++|.++++++..|.++++|
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence 2 1222245566777788888888888877777776554
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.5e-32 Score=243.16 Aligned_cols=253 Identities=24% Similarity=0.400 Sum_probs=230.2
Q ss_pred eEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002 91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 170 (357)
Q Consensus 91 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 170 (357)
.++.++++++.++.+|.... .+++.|++++|.++.+++..+..+ ++|++|++++|.++.+.+..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45689999999999997654 478999999999999998888888 679999999999999988889999999999999
Q ss_pred CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc--cCcccCCCCCCCCEEEccCCcCccc
Q psy15002 171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA--LHSNAFQGLDTLEILTIFENKLSLI 248 (357)
Q Consensus 171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (357)
+|.++.+|..++ ++|++|++++|.+..+++..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|+++.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 999999998776 799999999999999998889999999999999999864 6677888999999999999999987
Q ss_pred CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328 (357)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 328 (357)
+...+ ++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|+++.+|.. +..
T Consensus 187 ~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~ 261 (330)
T 1xku_A 187 PQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LAD 261 (330)
T ss_dssp CSSCC----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTT
T ss_pred Ccccc----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hcc
Confidence 55432 6899999999999999888899999999999999999999988899999999999999999988875 578
Q ss_pred CCCCcEEeCCCCcccccCcccccCc
Q psy15002 329 LPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 329 ~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
+++|+.|++++|+++++++..|+..
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CCCcCEEECCCCcCCccChhhcCCc
Confidence 8999999999999999999998654
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-32 Score=264.47 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=109.4
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL 133 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~ 133 (357)
||.|... ...++|.+.+++.+|..+ +..+++|++++|.++.++...|... +|++|++++|.++.+.+.+|
T Consensus 6 ~c~~~~~--~~~~~c~~~~l~~ip~~~-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~ 76 (606)
T 3vq2_A 6 PCIEVVP--NITYQCMDQKLSKVPDDI-------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76 (606)
T ss_dssp CCEEEET--TTEEECTTSCCSSCCTTS-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CceecCC--CCceEccCCCcccCCCCC-------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh
Confidence 5777533 348999999999888643 4677888888888888888777666 78888888888888877777
Q ss_pred ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHL 211 (357)
Q Consensus 134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L 211 (357)
..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++. +..+++|++|++++|.+..+. +..+.++++|
T Consensus 77 ~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 77 HGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 777 5688888888888887777777777777777777777666533 333356666666666555422 3345555555
Q ss_pred ceeecccccC
Q psy15002 212 LILNLNHNKI 221 (357)
Q Consensus 212 ~~L~l~~n~l 221 (357)
++|++++|++
T Consensus 156 ~~L~Ls~n~l 165 (606)
T 3vq2_A 156 VHVDLSYNYI 165 (606)
T ss_dssp CEEECCSSCC
T ss_pred CEEEccCCcc
Confidence 5555555443
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=5.6e-32 Score=238.05 Aligned_cols=236 Identities=25% Similarity=0.374 Sum_probs=158.7
Q ss_pred CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCc
Q psy15002 46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSL 125 (357)
Q Consensus 46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l 125 (357)
+||. .|.|.... ...++|...+++.+|. ... .++++|++++|.+
T Consensus 1 ~CP~-----~C~C~~~~-~~~~~c~~~~l~~ip~----------------------------~~~--~~l~~L~l~~n~i 44 (285)
T 1ozn_A 1 PCPG-----ACVCYNEP-KVTTSCPQQGLQAVPV----------------------------GIP--AASQRIFLHGNRI 44 (285)
T ss_dssp CCCT-----TCEEECSS-SCEEECCSSCCSSCCT----------------------------TCC--TTCSEEECTTSCC
T ss_pred CcCC-----CceECCCC-CeEEEcCcCCcccCCc----------------------------CCC--CCceEEEeeCCcC
Confidence 5999 69997542 3577887766655542 111 2455555555555
Q ss_pred ceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-cccccCCCC-CCCCCCeEECCCCCCeeeCcc
Q psy15002 126 AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDF-EGKALTQLDLSQNSLAVVPSP 203 (357)
Q Consensus 126 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~ 203 (357)
+.+++..+..+ ++|++|++++|.++.+.+..|.++++|++|++++|. ++.+++..+ ..++|++|++++|.++.+++.
T Consensus 45 ~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 123 (285)
T 1ozn_A 45 SHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123 (285)
T ss_dssp CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh
Confidence 55555555555 567777777777777776677777777777777776 666644433 347777777777777776666
Q ss_pred ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCC
Q psy15002 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283 (357)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 283 (357)
.+..+++|++|++++|.++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|.++++.+..+..+++
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCccc
Confidence 66777777777777777776666666667777777777777776666556665 66777777777777666566666677
Q ss_pred CcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 284 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
|++|++++|.++++++..+..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 777777777777766656666677777777777665
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.7e-32 Score=260.17 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=101.9
Q ss_pred ceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccc
Q psy15002 56 CQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLS 134 (357)
Q Consensus 56 C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~ 134 (357)
|.|... ..++|...+++.+|..+ +..+++|++++|.++.+++..|... +|++|++++|.++.+.+.+|.
T Consensus 28 ~~~~~~---~~l~ls~~~L~~ip~~~-------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 28 FSNELE---SMVDYSNRNLTHVPKDL-------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp -----C---CEEECTTSCCCSCCTTS-------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cccCCC---cEEEcCCCCCccCCCCC-------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 566543 38999999998877533 4788999999999999998888777 899999999999999988888
Q ss_pred cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccccc--CCCCCCCCCCeEECCCCCCe
Q psy15002 135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE--EGDFEGKALTQLDLSQNSLA 198 (357)
Q Consensus 135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~ 198 (357)
.+ ++|++|++++|.++.++.. .+++|++|++++|.++.++ ..+..+++|++|++++|+++
T Consensus 98 ~l-~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 98 FN-QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TC-TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CC-CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 88 6799999999999988765 7888888888888888765 34555577777777777653
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-32 Score=250.58 Aligned_cols=259 Identities=20% Similarity=0.303 Sum_probs=183.8
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..+++|+++++.++.+|...|... +|++|++++|.++.+++..+..+ ++|++|++++|.++.+++..|.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 567788888888888888877655 78888888888888888778777 6688888888888888888888888888888
Q ss_pred ccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCC---------------
Q psy15002 169 LLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL--------------- 232 (357)
Q Consensus 169 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--------------- 232 (357)
+++|.++.+|..++. .++|++|++++|.+..+++..+..+++|++|++++|.++.+....+..+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 888888888887654 5888888888888888887778888888888888888876643333222
Q ss_pred ----------------------CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002 233 ----------------------DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290 (357)
Q Consensus 233 ----------------------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 290 (357)
++|+.|++++|+++.. ..+..+ ++|+.|++++|.++++.+..+..+++|++|+++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 2334444444444332 233344 566777777776666655566666777777777
Q ss_pred CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002 291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
+|++++++. .+..+++|+.|++++|+++.+++. +..+++|+.|++++|++++++...+..++
T Consensus 281 ~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~ 342 (390)
T 3o6n_A 281 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLK 342 (390)
T ss_dssp SSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred CCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccCC
Confidence 777766654 234566777777777777666554 24556677777777777666655554444
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=254.01 Aligned_cols=259 Identities=26% Similarity=0.365 Sum_probs=228.1
Q ss_pred EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173 (357)
Q Consensus 94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (357)
.++.+++.++.+|.... .+++.|++++|.++.+.+..|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 68889999999998654 378999999999999999999888 679999999999999998899999999999999999
Q ss_pred cccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCc
Q psy15002 174 IALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252 (357)
Q Consensus 174 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 252 (357)
++.++...+. +++|++|++++|++..+.+..|..+++|++|++++|.+..+.+..|.++++|+.|++++|+++.+++..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 9999988764 499999999999999999889999999999999999999999999999999999999999999987777
Q ss_pred cccccccccEEEccCCcCcccCcccccCCCCCcEEEc------------------------cCCcCceeCcCcCCCCCCC
Q psy15002 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL------------------------LHNRIALIEEGDFEGLHNL 308 (357)
Q Consensus 253 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------~~n~l~~~~~~~~~~~~~L 308 (357)
+..+ ++|+.|++++|.+..+++..+..+++|++|++ ++|.++.++...+.++++|
T Consensus 172 l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 8887 89999999999999888766766665555555 4556666665567778889
Q ss_pred CEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+.|++++|+++++++..+..+++|+.|+|++|.++++.+..|.++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 999999999988888888888899999999999999988888877654
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-31 Score=249.91 Aligned_cols=256 Identities=26% Similarity=0.371 Sum_probs=199.7
Q ss_pred ceEEEEEecCCCCc-CccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCcee--ChhhhcCCCCCc
Q psy15002 90 LIIFYLKLRHNNLP-KLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV--PQTSLSKLENLR 165 (357)
Q Consensus 90 ~~l~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~ 165 (357)
..+++|++++|.+. .++...|... +|++|++++|.++.+.+..+..+ ++|++|++++|.+++. ....+.++++|+
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 45677777777775 5666666555 77777777777777776666666 5577777777777652 223366677777
Q ss_pred EEeccCCccccccCC--CCCCCCCCeEECCCCCCeeeCccccCCC-----------------------------------
Q psy15002 166 KLELLHNRIALIEEG--DFEGKALTQLDLSQNSLAVVPSPALKSL----------------------------------- 208 (357)
Q Consensus 166 ~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l----------------------------------- 208 (357)
+|++++|.++.+.+. +..+++|++|++++|++..+.+..+..+
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 777777777665433 2344667777777666655443322211
Q ss_pred --------------------------------------------------------------CcCceeecccccCcccCc
Q psy15002 209 --------------------------------------------------------------NHLLILNLNHNKISALHS 226 (357)
Q Consensus 209 --------------------------------------------------------------~~L~~L~l~~n~l~~~~~ 226 (357)
++|+.|++++|.+..+.+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 356666666666666667
Q ss_pred ccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCC
Q psy15002 227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306 (357)
Q Consensus 227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 306 (357)
..+..+++|+.|++++|+++++.+..|..+ ++|+.|++++|.++++++..+..+++|++|++++|+++++++..+.+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 788899999999999999999988889888 8999999999999999888899999999999999999999888999999
Q ss_pred CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
+|+.|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999888999999999999999998765
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-32 Score=271.12 Aligned_cols=289 Identities=24% Similarity=0.327 Sum_probs=234.4
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC-CcceecCcc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS-SLAVVEESS 132 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~-~l~~~~~~~ 132 (357)
+|.|.. ..++|...+++.+|. . +..+++|++++|.++.+++..|... +|++|++++| .+..+.+.+
T Consensus 1 ~C~~~~----~~~dcs~~~L~~vP~-l-------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~ 68 (844)
T 3j0a_A 1 SCSFDG----RIAFYRFCNLTQVPQ-V-------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68 (844)
T ss_dssp CCBTTT----EEEEESCCCSSCCCS-S-------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT
T ss_pred CceEec----eEEEccCCCCCCCCC-C-------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH
Confidence 377764 389999999999885 2 5789999999999999988888777 9999999999 566777888
Q ss_pred cccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc-ccCC--CCCCCCCCeEECCCCCCeeeCc-cccCCC
Q psy15002 133 LSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEG--DFEGKALTQLDLSQNSLAVVPS-PALKSL 208 (357)
Q Consensus 133 ~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~l 208 (357)
|..+ ++|++|++++|.+..+.+..|.++++|++|++++|.++. ++.. +..+++|++|++++|.+..+.+ ..|.++
T Consensus 69 f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 69 FRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred hcCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 8888 679999999999999988899999999999999999986 4443 4556999999999999988765 578999
Q ss_pred CcCceeecccccCcccCcccCCCC--C------------------------------CCCEEEccCCcCcccCCCccc--
Q psy15002 209 NHLLILNLNHNKISALHSNAFQGL--D------------------------------TLEILTIFENKLSLIEPDSFK-- 254 (357)
Q Consensus 209 ~~L~~L~l~~n~l~~~~~~~l~~l--~------------------------------~L~~L~L~~n~l~~~~~~~~~-- 254 (357)
++|++|++++|.+..+.+..+..+ + .|+.|++++|+++...+..+.
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 999999999998876544433222 2 266777776654432221111
Q ss_pred ----------------------------------cc-cccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002 255 ----------------------------------GL-EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 299 (357)
Q Consensus 255 ----------------------------------~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 299 (357)
++ .++++.|++++|.+..+++..+..+++|+.|++++|+++.+++
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 11 1468888888888888887788888999999999999999888
Q ss_pred CcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 300 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
..|.++++|+.|++++|+++++.+..+..+++|+.|++++|.+.++++..|.++++|
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 888888999999999999988888888888999999999999999888888877654
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=3.5e-31 Score=247.16 Aligned_cols=216 Identities=32% Similarity=0.485 Sum_probs=202.1
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 216 (357)
++++.|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|+++.+++..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57999999999999999999999999999999999999998776654 99999999999999999989999999999999
Q ss_pred ccccCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc
Q psy15002 217 NHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295 (357)
Q Consensus 217 ~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 295 (357)
++|.+..+++..|..+++|+.|++++ +.+..++...|..+ ++|+.|++++|.++.++. +..+++|++|++++|.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-cccCeecCCCCcCccccc--cCCCcccCEEECCCCccC
Confidence 99999999998999999999999998 56777877788888 899999999999998873 788999999999999999
Q ss_pred eeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 296 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
.+++..|.++++|+.|++++|+++.+++..|.++++|+.|+|++|++++++++.|..+++|
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 9999999999999999999999999999999999999999999999999999998887654
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2e-31 Score=258.03 Aligned_cols=259 Identities=20% Similarity=0.306 Sum_probs=185.4
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..++.++++++.+..+|...|... +|+.|++++|.++.+++..|..+ ++|++|++++|.++.+++..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 556788888888888888777655 78888888888888887777777 5688888888888888888788888888888
Q ss_pred ccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCC---------------
Q psy15002 169 LLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL--------------- 232 (357)
Q Consensus 169 l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--------------- 232 (357)
+++|.++.+|+.++ .+++|++|++++|.+..+++..+..+++|++|++++|.+..++...+..+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 88888888888765 44888888888888888887778888888888888888776644333221
Q ss_pred ----------------------CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002 233 ----------------------DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290 (357)
Q Consensus 233 ----------------------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 290 (357)
++|+.|++++|.+++. ..+..+ ++|+.|++++|.++++.+..+..+++|+.|+++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 1234444444444332 234444 567777777777777666667777777777777
Q ss_pred CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002 291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
+|.+++++. .+..+++|+.|+|++|.++.+|... ..+++|+.|+|++|.+++++...+..++
T Consensus 287 ~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 287 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp TSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred CCCCCCCCc-ccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 777777654 3455677777777777777666543 5566777777777777776655555544
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.2e-31 Score=238.95 Aligned_cols=269 Identities=18% Similarity=0.205 Sum_probs=228.6
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcC---ccccccCCCcccEEEecC-CCcceecC
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPK---LTGFIFFGLDIRHLTIHN-SSLAVVEE 130 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~---l~~~~~~~~~L~~L~l~~-~~l~~~~~ 130 (357)
+|.|.+. .|.|..... ...++.|+++++.++. +|.......+|++|++++ |.+....+
T Consensus 33 ~C~~~w~----gv~C~~~~~--------------~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p 94 (313)
T 1ogq_A 33 CCNRTWL----GVLCDTDTQ--------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94 (313)
T ss_dssp TTTTCST----TEEECCSSS--------------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC
T ss_pred CCcCCCc----ceEeCCCCC--------------CceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC
Confidence 5766554 677864321 2578999999999984 666555555999999995 88987777
Q ss_pred cccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCCeEECCCCCCeeeCccccCCCC
Q psy15002 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209 (357)
Q Consensus 131 ~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 209 (357)
..+..+ ++|++|++++|.+++..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..++
T Consensus 95 ~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 95 PAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp GGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred hhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 788877 67999999999999777778999999999999999998 6777777789999999999999966666888887
Q ss_pred -cCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEE
Q psy15002 210 -HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288 (357)
Q Consensus 210 -~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 288 (357)
+|++|++++|++....+..+..++ |+.|++++|++++..+..+..+ ++|+.|++++|.++...+. +..+++|++|+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 999999999999977788888877 9999999999998888888888 8999999999999876654 77889999999
Q ss_pred ccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCc-ccccC
Q psy15002 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH-IHTVD 346 (357)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~-l~~~~ 346 (357)
+++|.+++..+..+..+++|+.|++++|++++..+.. .++++|+.+++++|+ +.+.+
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999877778889999999999999999655544 788999999999997 66544
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=257.64 Aligned_cols=163 Identities=24% Similarity=0.367 Sum_probs=138.2
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL 133 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~ 133 (357)
+|.|... ...+.|...+++++|..+ +..+++|++++|.++.++...|... +|++|++++|.++.+++.+|
T Consensus 2 ~c~~~~~--~~~~~c~~~~l~~ip~~l-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 72 (570)
T 2z63_A 2 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72 (570)
T ss_dssp CSEEEET--TTEEECCSSCCSSCCSSS-------CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTT
T ss_pred CccccCC--CcEEEeCCCCccccCCCc-------cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccc
Confidence 5888765 348999999998888533 4678999999999999998888776 89999999999999998888
Q ss_pred ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHL 211 (357)
Q Consensus 134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L 211 (357)
..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.++.. +..+++|++|++++|.+..+. +..+.++++|
T Consensus 73 ~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 73 QSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cCc-hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 888 6799999999999999988899999999999999999988874 445589999999999998754 5678888999
Q ss_pred ceeecccccCcccCcc
Q psy15002 212 LILNLNHNKISALHSN 227 (357)
Q Consensus 212 ~~L~l~~n~l~~~~~~ 227 (357)
++|++++|.+..+.+.
T Consensus 152 ~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 152 EHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CEEECTTSCCCEECGG
T ss_pred CEEeCcCCccceecHH
Confidence 9999988877665443
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=9.5e-31 Score=245.04 Aligned_cols=216 Identities=33% Similarity=0.451 Sum_probs=202.2
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 216 (357)
+++++|++++|.++.+.+..|.++++|++|++++|.++.+++..+. +++|++|++++|+++.+++..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5799999999999999999999999999999999999999877665 499999999999999999988999999999999
Q ss_pred ccccCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc
Q psy15002 217 NHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295 (357)
Q Consensus 217 ~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 295 (357)
++|.+..+++..|..+++|+.|++++ +.+..++...|..+ ++|+.|++++|.++.++ .+..+++|++|++++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC-CCCCEEECCCCcccccc--cccccccccEEECcCCcCc
Confidence 99999999998999999999999998 67788877788888 89999999999999986 3788999999999999999
Q ss_pred eeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 296 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
++++..|.++++|+.|++++|+++++++..+.++++|+.|+|++|.+++++++.|..+++|
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 9999999999999999999999999999999999999999999999999999998887765
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-30 Score=253.46 Aligned_cols=262 Identities=25% Similarity=0.363 Sum_probs=140.6
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..++.|++++|.++.++...|... +|++|++++|.++.++.. +..+ ++|++|++++|.++.+++..+.++++|++|+
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGL-STLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hccc-ccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 366777777777777777666555 677777777776655432 3444 4577777777766666555566666666666
Q ss_pred ccCCccc-cccCCC-CCCCCCCeEECCCCCCeeeC--ccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCc
Q psy15002 169 LLHNRIA-LIEEGD-FEGKALTQLDLSQNSLAVVP--SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244 (357)
Q Consensus 169 l~~n~l~-~~~~~~-~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 244 (357)
+++|.+. .++... ...++|++|++++|.+..+. +..+..+++|++|++++|.+..+.+..+..+++|+.|++++|+
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 6666554 444442 23355666666666555544 3445555555555555555555555555555555555555555
Q ss_pred CcccCCC-ccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee---CcCcCCCCCCCCEeecCCCcCcc
Q psy15002 245 LSLIEPD-SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI---EEGDFEGLHNLDSLVLAHNQLRT 320 (357)
Q Consensus 245 l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~ 320 (357)
++...+. .+..+ ++|+.|++++|.++..++..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++++
T Consensus 412 l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 5443322 23333 4555555555555544444444445555555555544431 11233444444445554444444
Q ss_pred cCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
+++..+.++++|+.|++++|++++++++.|.+++
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 4444444444444444444444444444444443
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=7.2e-30 Score=251.02 Aligned_cols=261 Identities=28% Similarity=0.387 Sum_probs=220.9
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCC--cceecCccccccc-ccceEEEccCCcCceeChhhhcCCCCCc
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS--LAVVEESSLSSIG-KKLKRLNLGGNELTRVPQTSLSKLENLR 165 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~--l~~~~~~~~~~l~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 165 (357)
..+++|++++|.++.+++..|... +|++|++++|. +..++...+..+. .+|++|++++|.++.+.+..|.++++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 567888999999988888877766 88999998886 4555555555442 4699999999999999888899999999
Q ss_pred EEeccCCccc-cccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCc--ccCcccCCCCCCCCEEEcc
Q psy15002 166 KLELLHNRIA-LIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIF 241 (357)
Q Consensus 166 ~L~l~~n~l~-~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~ 241 (357)
+|++++|.++ .++...+ ..++|++|++++|++..+.+..|..+++|+.|++++|.+. ...+..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 9999999997 4664444 4489999999999999998888999999999999999876 3456778889999999999
Q ss_pred CCcCcccCCCccccccccccEEEccCCcCcccCc--------ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeec
Q psy15002 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ--------TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313 (357)
Q Consensus 242 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 313 (357)
+|+++.+++..|..+ ++|+.|++++|.++.++. ..+..+++|++|++++|+++.+++..|.++++|+.|++
T Consensus 489 ~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 489 NNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 999999888888887 789999999999987643 23678899999999999999999888999999999999
Q ss_pred CCCcCcccCcccCCCCCCCcEEeCCCCcccccCccccc
Q psy15002 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351 (357)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~ 351 (357)
++|+++++++..|..+++|+.|++++|.++++++..|.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 99999999998888999999999999999999888664
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7e-31 Score=251.94 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=141.0
Q ss_pred cccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccC
Q psy15002 69 CEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG 147 (357)
Q Consensus 69 C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~ 147 (357)
|...+++++|..+ +..+++|++++|.++.+++..|... +|++|++++|.++.+.+.+|..+ ++|++|++++
T Consensus 12 ~~~~~l~~ip~~~-------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~ 83 (549)
T 2z81_A 12 GRSRSFTSIPSGL-------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSD 83 (549)
T ss_dssp CTTSCCSSCCSCC-------CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTT
T ss_pred CCCCccccccccC-------CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCC
Confidence 5555666666432 4678999999999999988777776 89999999999999999999888 6799999999
Q ss_pred CcCceeChhhhcCCCCCcEEeccCCccccc--cCCCCCCCCCCeEECCCCC-CeeeCccccCCCCcCceeecccccCccc
Q psy15002 148 NELTRVPQTSLSKLENLRKLELLHNRIALI--EEGDFEGKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNHNKISAL 224 (357)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 224 (357)
|.++++++..|+++++|++|++++|.++.+ +..+..+++|++|++++|. +..+++..+.++++|++|++++|.+...
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999999998899999999999999999854 5556667999999999998 6778777888899999999999988776
Q ss_pred CcccCCC------------------------CCCCCEEEccCCcCcc
Q psy15002 225 HSNAFQG------------------------LDTLEILTIFENKLSL 247 (357)
Q Consensus 225 ~~~~l~~------------------------l~~L~~L~L~~n~l~~ 247 (357)
.+..+.. +++|+.|++++|++++
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 5555543 4566666666666554
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.97 E-value=1.4e-29 Score=221.70 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=113.7
Q ss_pred ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++++|.++.+++..+.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 45555555555555444445555555555555555544443322 24555555555555555555555555566666666
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccC-CCccccccccccEEEccCCcCcccCcccccCCCCCc----EEEccCCc
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIE-PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNR 293 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~ 293 (357)
|.+..+.+..+..+++|++|++++|+++.+. +..+..+ ++|+.|++++|.++.+++..+..+++|+ +|++++|.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555555545555566666666666655543 4445554 5566666666666655554444444444 56666666
Q ss_pred CceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 294 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
++.+++..+.. .+|+.|++++|+++++++..+..+++|+.|++++|+++..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 66666554442 3566666666666666666666666666666666666543
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.3e-30 Score=254.86 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=48.5
Q ss_pred cccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCC
Q psy15002 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338 (357)
Q Consensus 259 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 338 (357)
+++.|++++|.+++..+..++.++.|+.|++++|++++..+..++++++|+.|||++|++++..|..+..++.|++||++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 44555555555554444445555555555555555555444455555555555555555554444445555555555555
Q ss_pred CCcccccCcc
Q psy15002 339 GNHIHTVDPA 348 (357)
Q Consensus 339 ~N~l~~~~~~ 348 (357)
+|+++|..|+
T Consensus 713 ~N~l~g~iP~ 722 (768)
T 3rgz_A 713 NNNLSGPIPE 722 (768)
T ss_dssp SSEEEEECCS
T ss_pred CCcccccCCC
Confidence 5555554443
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.3e-30 Score=229.64 Aligned_cols=239 Identities=25% Similarity=0.322 Sum_probs=211.8
Q ss_pred CcccEEEecCCCcce--ecCcccccccccceEEEccC-CcCceeChhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCC
Q psy15002 113 LDIRHLTIHNSSLAV--VEESSLSSIGKKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALT 188 (357)
Q Consensus 113 ~~L~~L~l~~~~l~~--~~~~~~~~l~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~ 188 (357)
.++++|+++++.+.. ..+..+..+ ++|++|++++ |.+.+..+..|.++++|++|++++|.++ .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 479999999999987 666778877 6799999995 9998777778999999999999999998 6777777789999
Q ss_pred eEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCC-CCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002 189 QLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD-TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267 (357)
Q Consensus 189 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 267 (357)
+|++++|.++...+..+..+++|++|++++|+++...+..+..++ +|+.|++++|++++..+..+..+ . |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c-ccEEECcC
Confidence 999999999977777899999999999999999976677888887 99999999999998878888886 4 99999999
Q ss_pred CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
|.+++..+..+..+++|+.|++++|.++...+. +..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988888899999999999999999977664 7778999999999999997777778899999999999999998777
Q ss_pred ccccCcccc
Q psy15002 348 AAFSGLEAK 356 (357)
Q Consensus 348 ~~~~~l~~l 356 (357)
.. ..+++|
T Consensus 286 ~~-~~l~~L 293 (313)
T 1ogq_A 286 QG-GNLQRF 293 (313)
T ss_dssp CS-TTGGGS
T ss_pred CC-cccccc
Confidence 75 555544
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=233.38 Aligned_cols=248 Identities=23% Similarity=0.331 Sum_probs=209.0
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..+++|++++|.++.++...|... +|++|++++|.++.+++..+..+ ++|++|++++|.++.++...|.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 568899999999999998878776 89999999999999988888887 6799999999999999988889999999999
Q ss_pred ccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCC-------------------------------------Cc
Q psy15002 169 LLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSL-------------------------------------NH 210 (357)
Q Consensus 169 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~~ 210 (357)
+++|.++.+++..+. .++|++|++++|+++.++...+..+ ++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 999999988776554 4899999999998877654333222 24
Q ss_pred CceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290 (357)
Q Consensus 211 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 290 (357)
|+.|++++|.++.. ..+..+++|+.|++++|.++++.+..+..+ ++|+.|++++|.++.++. .+..+++|++|+++
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVALNL-YGQPIPTLKVLDLS 303 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECCSSCCCEEEC-SSSCCTTCCEEECC
T ss_pred ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc-ccCCEEECCCCcCcccCc-ccCCCCCCCEEECC
Confidence 55566666666554 357788999999999999999988888888 899999999999999874 45788999999999
Q ss_pred CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccC
Q psy15002 291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346 (357)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~ 346 (357)
+|+++.++.. +..+++|+.|++++|+++.++ +..+++|+.|++++|+++...
T Consensus 304 ~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence 9999988763 566899999999999999987 577899999999999997643
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=233.01 Aligned_cols=258 Identities=19% Similarity=0.265 Sum_probs=226.5
Q ss_pred EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173 (357)
Q Consensus 94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (357)
..+.+++.++.+|...+. ++++|++++|.++.++...+..+ ++|++|++++|.++.+++..|.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCCT--TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcccccccccc--cCcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 378899999999987664 79999999999999998888888 679999999999999998889999999999999999
Q ss_pred cccccCCC-CCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccc-cCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002 174 IALIEEGD-FEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHN-KISALHSNAFQGLDTLEILTIFENKLSLIEP 250 (357)
Q Consensus 174 l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 250 (357)
++.+++.. ...++|++|++++|+++.++. ..+..+++|++|++++| .+..+.+..+..+++|+.|++++|+++.+.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 99998874 456999999999999999887 68899999999999999 5888888889999999999999999999988
Q ss_pred CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC---CCCCCCEeecCCCcCcc-----cC
Q psy15002 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE---GLHNLDSLVLAHNQLRT-----IP 322 (357)
Q Consensus 251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~-----~~ 322 (357)
..+..+ ++|+.|++++|.++.++...+..+++|++|++++|.+++++...+. ....++.++++++.+.+ ++
T Consensus 192 ~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 192 KSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 888888 8999999999999988876666789999999999999987654442 35678899999998875 33
Q ss_pred cccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 323 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
..+.++++|+.|++++|.++++++..|.++++|
T Consensus 271 -~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 271 -KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp -HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -HHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence 345788999999999999999998888877654
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.2e-30 Score=253.87 Aligned_cols=261 Identities=25% Similarity=0.257 Sum_probs=138.1
Q ss_pred eEEEEEecCCCCc-CccccccCC-CcccEEEecCCCcceecCcccccccccceEEEccCCcCc-eeChhhhcCCCCCcEE
Q psy15002 91 IIFYLKLRHNNLP-KLTGFIFFG-LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKL 167 (357)
Q Consensus 91 ~l~~L~l~~~~i~-~l~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L 167 (357)
.+++|++++|.+. .+|...+.. .+|++|++++|.++...+..+..+ ++|++|++++|.+. .++...+.++++|++|
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 4455555555555 555555554 477788888877777766667666 56888888888877 5665557778888888
Q ss_pred eccCCccc-cccCCCCCCC-CCCeEECCCCCCeeeCccccCC--CCcCceeecccccCcccCcccCCCCCCCCEEEccCC
Q psy15002 168 ELLHNRIA-LIEEGDFEGK-ALTQLDLSQNSLAVVPSPALKS--LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243 (357)
Q Consensus 168 ~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 243 (357)
++++|.++ .+|..+...+ +|++|++++|.+....+..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 88888776 4554444333 5555555555544332222222 344444555444444444444444444555555555
Q ss_pred cCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002 244 KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323 (357)
Q Consensus 244 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 323 (357)
++++..+..+..+ ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+.++++|+.|++++|++++..+
T Consensus 429 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 4444444444444 444444444444443333334444444444444444444333344444444444444444443333
Q ss_pred ccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002 324 RVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 324 ~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
..+..+++|+.|++++|++++..|..|+++
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 333444444444444444444444444443
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=231.39 Aligned_cols=248 Identities=21% Similarity=0.268 Sum_probs=175.4
Q ss_pred EEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002 92 IFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 170 (357)
Q Consensus 92 l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 170 (357)
+...+++.+++...+...+... +|++|++++|.++.+.+..+..+ ++|++|++++|.++++++ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4445555566655555555544 67777777777777666666666 568888888887776654 7777788888888
Q ss_pred CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002 171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250 (357)
Q Consensus 171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 250 (357)
+|.++.++.. ++|++|++++|.++.++... +++|++|++++|+++.+.+..+..+++|+.|++++|.++.+.+
T Consensus 89 ~n~l~~l~~~----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELLVG----PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEEEC----TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccccCC----CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8877776633 67788888888877776533 5667888888888877777677777788888888888777666
Q ss_pred Cccc-cccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002 251 DSFK-GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329 (357)
Q Consensus 251 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (357)
..+. .+ ++|+.|++++|.++.++. ...+++|++|++++|.++++++. +..+++|+.|++++|+++.+|.. +..+
T Consensus 162 ~~~~~~l-~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l 236 (317)
T 3o53_A 162 AELAASS-DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFS 236 (317)
T ss_dssp GGGGGGT-TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCC
T ss_pred HHHhhcc-CcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcC
Confidence 5554 34 678888888888777753 33467788888888888877664 66677888888888888877654 4667
Q ss_pred CCCcEEeCCCCccc-ccCcccccCcc
Q psy15002 330 PLLNSLELDGNHIH-TVDPAAFSGLE 354 (357)
Q Consensus 330 ~~L~~L~L~~N~l~-~~~~~~~~~l~ 354 (357)
++|+.|++++|++. +..+..+..++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccc
Confidence 78888888888877 55555555544
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=2.4e-31 Score=237.08 Aligned_cols=246 Identities=21% Similarity=0.177 Sum_probs=197.1
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc--------cccccceEEEccCCcCceeChhhh--c
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS--------SIGKKLKRLNLGGNELTRVPQTSL--S 159 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--------~l~~~L~~L~ls~n~l~~~~~~~~--~ 159 (357)
..++++++++|.+ .+|...+.. ++.|++++|.+......... .+ ++|++|++++|.+++..+..+ .
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHHHh
Confidence 3455667788888 777655543 88889998888654332222 23 679999999999996544444 8
Q ss_pred CCCCCcEEeccCCccccccCCCCCC-----CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC--ccc--CC
Q psy15002 160 KLENLRKLELLHNRIALIEEGDFEG-----KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH--SNA--FQ 230 (357)
Q Consensus 160 ~l~~L~~L~l~~n~l~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~--l~ 230 (357)
++++|++|++++|.++.+|..+... ++|++|++++|++..+++..+..+++|++|++++|++.+.. +.. +.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 9999999999999999886544444 89999999999999999889999999999999999975431 222 37
Q ss_pred CCCCCCEEEccCCcCcccC---CCccccccccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCcCceeCcCcCCCCC
Q psy15002 231 GLDTLEILTIFENKLSLIE---PDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIALIEEGDFEGLH 306 (357)
Q Consensus 231 ~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 306 (357)
.+++|++|++++|+++.++ ...+..+ ++|+.|++++|.+++..+ ..+..+++|++|++++|.++.++...+ +
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~ 274 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A 274 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence 8899999999999998542 2333444 799999999999998663 456678999999999999998877443 8
Q ss_pred CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
+|+.|++++|+++++|. +..+++|+.|++++|++++.
T Consensus 275 ~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred CceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 99999999999999965 78999999999999999875
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.8e-29 Score=222.20 Aligned_cols=249 Identities=22% Similarity=0.337 Sum_probs=225.8
Q ss_pred EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeC--hhhhcCCCCCcEEecc
Q psy15002 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP--QTSLSKLENLRKLELL 170 (357)
Q Consensus 93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~ 170 (357)
+.++.+++.++.+|...+ .++++|++++|.++.++...+..+ ++|++|++++|.++.+. +..+.++++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 378999999999998665 478999999999999998888887 67999999999998663 4557789999999999
Q ss_pred CCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc-c
Q psy15002 171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-I 248 (357)
Q Consensus 171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 248 (357)
+|.++.++..+...++|++|++++|.++.++. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++ .
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999999888888999999999999999876 678999999999999999999888889999999999999999986 4
Q ss_pred CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328 (357)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 328 (357)
.+..+..+ ++|+.|++++|.++++++..+..+++|++|++++|.++++++..+..+++|+.|++++|++++.++..+..
T Consensus 167 ~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 56777777 89999999999999998888999999999999999999999888999999999999999999998888888
Q ss_pred CC-CCcEEeCCCCccccc
Q psy15002 329 LP-LLNSLELDGNHIHTV 345 (357)
Q Consensus 329 ~~-~L~~L~L~~N~l~~~ 345 (357)
++ +|+.|++++|++++.
T Consensus 246 ~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCTTCCEEECTTCCEECS
T ss_pred hhccCCEEEccCCCeecc
Confidence 84 999999999999864
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.6e-30 Score=242.47 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=94.2
Q ss_pred eEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEE
Q psy15002 65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRL 143 (357)
Q Consensus 65 ~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L 143 (357)
..++|+..+++.+|..+ +..+++|++++|.++.+++..|... +|++|++++|.++.+.+..|..+ ++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~-------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSC-------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEE
T ss_pred ceEecCCCCcccccccc-------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEE
Confidence 36778777777666322 3677888888888888887666665 88888888888888877778777 568888
Q ss_pred EccCCcCceeChhhhcCCCCCcEEeccCCccccc--cCCCCCCCCCCeEECCCCCCee
Q psy15002 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALI--EEGDFEGKALTQLDLSQNSLAV 199 (357)
Q Consensus 144 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~~ 199 (357)
++++|.++.++.. .+++|++|++++|.++.+ |..+..+++|++|++++|.+..
T Consensus 75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 75 DLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp ECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred ecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 8888888887764 788888888888888753 4556666788888887776643
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.9e-29 Score=238.30 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=125.3
Q ss_pred EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCC
Q psy15002 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172 (357)
Q Consensus 93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 172 (357)
+++++++++++.+|...+ .++++|++++|.++.+++..+..+ ++|++|++++|.++.++++.|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 689999999999998765 589999999999999998899888 67999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeecccccCcccCcccCCCCCCC--CEEEccCCcC
Q psy15002 173 RIALIEEGDFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNKISALHSNAFQGLDTL--EILTIFENKL 245 (357)
Q Consensus 173 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l 245 (357)
.++.+|.. .+++|++|++++|+++.++ +..|.++++|++|++++|.+.... +..+++| +.|++++|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence 99999987 6799999999999999976 368999999999999999886533 2333333 6666665555
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.96 E-value=5.8e-29 Score=213.09 Aligned_cols=195 Identities=21% Similarity=0.345 Sum_probs=139.0
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-cccccCCCCC-CCCCCeEECCC-CCCeeeCccccCCCCcCceee
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFE-GKALTQLDLSQ-NSLAVVPSPALKSLNHLLILN 215 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 215 (357)
+|++|++++|.++.+++..|.++++|++|++++|. ++.+++..|. .++|++|++++ |+++.+++..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 35555555555555555555555566666666554 5555554432 25566666665 666666666677777788888
Q ss_pred cccccCcccCcccCCCCCCCC---EEEccCC-cCcccCCCcccccccccc-EEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002 216 LNHNKISALHSNAFQGLDTLE---ILTIFEN-KLSLIEPDSFKGLEKKLK-RLNLGGNELTRVPQTSLSKLENLRKLELL 290 (357)
Q Consensus 216 l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 290 (357)
+++|.++.++. +..+++|+ .|++++| +++.+++..|..+ ++|+ .|++++|.++.++...+.. ++|++|+++
T Consensus 112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 88887777643 66777777 8888888 8888877777777 6888 8888888888877766655 788888888
Q ss_pred CCc-CceeCcCcCCCC-CCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCC
Q psy15002 291 HNR-IALIEEGDFEGL-HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340 (357)
Q Consensus 291 ~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N 340 (357)
+|+ ++.+++..|.++ ++|+.|++++|+++++|+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 884 888888788888 8888888888888888874 5677888888776
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=7.3e-29 Score=240.02 Aligned_cols=247 Identities=23% Similarity=0.332 Sum_probs=209.5
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..+++|++++|.++.+++..|... +|++|++++|.++.+++..|..+ ++|++|++++|.++.+++..|.++++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 568899999999999998877776 89999999999999998888888 6799999999999999988889999999999
Q ss_pred ccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCC-------------------------------------Cc
Q psy15002 169 LLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSL-------------------------------------NH 210 (357)
Q Consensus 169 l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~~ 210 (357)
+++|.++.+++..+ .+++|++|++++|.++.++...+..+ ++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 99999998877654 45899999999998887654333222 23
Q ss_pred CceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290 (357)
Q Consensus 211 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 290 (357)
|+.|++++|.++.. ..+..+++|+.|++++|.++++.+..|..+ ++|+.|++++|.+++++. .+..+++|+.|+++
T Consensus 234 L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVALNL-YGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECTTSCCCEEEC-SSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc-cCCCEEECCCCCCCCCCc-ccccCCCCcEEECC
Confidence 55555555555543 457788999999999999999988889888 899999999999999864 46778999999999
Q ss_pred CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
+|.++.++. .+..+++|+.|++++|.+++++ +..+++|+.|++++|+|.+.
T Consensus 310 ~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 310 HNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 999998876 4567899999999999999887 47788999999999998753
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=237.22 Aligned_cols=127 Identities=25% Similarity=0.358 Sum_probs=86.4
Q ss_pred CCCCCCCCEEEccCCcCcccCC-CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc-eeCcCcCCCCC
Q psy15002 229 FQGLDTLEILTIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLH 306 (357)
Q Consensus 229 l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~ 306 (357)
+..+++|+.|++++|.+....+ ..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.++ ...+..+..++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 3344455555555555544433 344444 56777777777777666666777777777777777776 23335677778
Q ss_pred CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+|+.|++++|+++++++..+..+++|+.|++++|+++++++..|.+++.|
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 88888888888888777777778888888888888888887777766654
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=9.3e-29 Score=240.74 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=203.0
Q ss_pred hHHHHHhhhcc-CCCceEEEEEecCCCCcCccc--cccCCCcccEEEecCCCcc-eecCcccccccccceEEEccCCcCc
Q psy15002 76 KIQHTMTTLKS-KSGLIIFYLKLRHNNLPKLTG--FIFFGLDIRHLTIHNSSLA-VVEESSLSSIGKKLKRLNLGGNELT 151 (357)
Q Consensus 76 ~i~~~~~~~~~-~~~~~l~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~~L~~L~ls~n~l~ 151 (357)
.+|..+..+.. ..-..+++|++++|.++.+|. ......+|++|++++|.++ .++ .+..+ ++|++|++++|.++
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l-~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE-IKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE-EEESEEECCSSEEE
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCC-CCCCEEECCCCccc
Confidence 46766655411 111567899999999988887 4444448999999999988 554 66666 57999999999888
Q ss_pred eeChhhhcCCCC-CcEEeccCCccccccCCCCCC--CCCCeEECCCCCCeeeCccccC-------CCCcCceeecccccC
Q psy15002 152 RVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPALK-------SLNHLLILNLNHNKI 221 (357)
Q Consensus 152 ~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l 221 (357)
.++.. +.++++ |++|++++|.++.+|..+... ++|++|++++|.+....+..+. .+++|++|++++|.+
T Consensus 367 ~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 367 EIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp ECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred cccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 77654 788888 999999999998888766554 3788888888888876666666 667888888888888
Q ss_pred cccCcccCCCCCCCCEEEccCCcCcccCCCcccccc------ccccEEEccCCcCcccCcccc-cCCCCCcEEEccCCcC
Q psy15002 222 SALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRI 294 (357)
Q Consensus 222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l 294 (357)
+.++...+..+++|+.|++++|+++.++...+.... ++|+.|++++|.++.++.... ..+++|++|++++|++
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 887776667788888888888888877666655431 178888888888887775432 3788888888888888
Q ss_pred ceeCcCcCCCCCCCCEeecC------CCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002 295 ALIEEGDFEGLHNLDSLVLA------HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
++++. .+..+++|+.|+++ +|++.+..+..+.++++|+.|+|++|+++.++...+..++
T Consensus 526 ~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~ 590 (636)
T 4eco_A 526 SKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS 590 (636)
T ss_dssp SSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCC
T ss_pred CCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCC
Confidence 88644 55667888888884 4566655555567788888888888888777665554444
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.6e-29 Score=236.66 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=114.4
Q ss_pred EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCC
Q psy15002 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172 (357)
Q Consensus 93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 172 (357)
++|++++|.++.+|...+ .++++|++++|.++.+.+..+..+ ++|++|++++|.++++.+..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 589999999999998766 689999999999999988888887 67999999999999998889999999999999999
Q ss_pred ccccccCCCCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeecccccCcc
Q psy15002 173 RIALIEEGDFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNKISA 223 (357)
Q Consensus 173 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 223 (357)
.++.+|.. ..++|++|++++|+++.++ +..+..+++|++|++++|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 99999987 6799999999999999864 4688899999999999988754
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=249.53 Aligned_cols=258 Identities=24% Similarity=0.329 Sum_probs=211.3
Q ss_pred CceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002 89 GLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL 167 (357)
Q Consensus 89 ~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 167 (357)
+..++.|++++|.+..+++..|... +|+.|++++|.+..+.+..|.++ ++|++|++++|.++.+.+..|.++++|++|
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 4678999999999998888888776 89999999999999988888887 679999999999999888889999999999
Q ss_pred eccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc-------------------
Q psy15002 168 ELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN------------------- 227 (357)
Q Consensus 168 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------- 227 (357)
++++|.++.+++..+. .++|++|++++|.++.++. +++|+.|++++|++..++..
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 9999999988887665 4899999999998876543 55566666666655544221
Q ss_pred --cCCCCCCCCEEEccCCcCcccCCC-ccccccccccEEEccCCcCccc-----CcccccCCCCCcEEEccCCcCceeCc
Q psy15002 228 --AFQGLDTLEILTIFENKLSLIEPD-SFKGLEKKLKRLNLGGNELTRV-----PQTSLSKLENLRKLELLHNRIALIEE 299 (357)
Q Consensus 228 --~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 299 (357)
.+..+++|+.|++++|+++...+. .+... ++|+.|++++|.++.. .+..+..+++|+.|++++|+++++++
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC-TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccC-CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 134678889999999988876544 23333 7899999999988743 33457788999999999999999999
Q ss_pred CcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002 300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355 (357)
Q Consensus 300 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 355 (357)
..|.++++|+.|+|++|+++++++..+. ++|+.|+|++|.++++++..|.+++.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence 8899999999999999999999987765 78999999999999999998887664
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2e-28 Score=237.59 Aligned_cols=248 Identities=21% Similarity=0.274 Sum_probs=195.3
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeC--hhhhcCCCCCcEE
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP--QTSLSKLENLRKL 167 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L 167 (357)
..+++|++++|.+..+|.. ...+|++|++++|...... .+..+ ++|++|++++|.++.+. +..+.++++|++|
T Consensus 307 ~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccCcccccC--CCCccceeeccCCcCccch--hhccC-CCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 4566777777777666632 3346777777777433222 33344 56888888888888773 5568888889999
Q ss_pred eccCCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002 168 ELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246 (357)
Q Consensus 168 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (357)
++++|.++.++..+...++|++|++++|++..+.+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|+++
T Consensus 382 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp ECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 99988888888767777889999999988888766 67888888999999998888887888888888999999998887
Q ss_pred c-cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002 247 L-IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325 (357)
Q Consensus 247 ~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 325 (357)
+ ..+..+..+ ++|+.|++++|.++++++..+..+++|++|++++|+++++.+..+.++++|+.|++++|+++.+|..
T Consensus 462 ~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~- 539 (606)
T 3vq2_A 462 DNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI- 539 (606)
T ss_dssp GGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-
T ss_pred CcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-
Confidence 6 356677777 7899999999988888877788888999999999988888777888888899999999998888876
Q ss_pred CCCCC-CCcEEeCCCCcccc
Q psy15002 326 FAHLP-LLNSLELDGNHIHT 344 (357)
Q Consensus 326 ~~~~~-~L~~L~L~~N~l~~ 344 (357)
+..++ +|+.+++++|++..
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCC
T ss_pred HhhhcccCcEEEccCCCccc
Confidence 56665 58899999988875
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3e-28 Score=220.26 Aligned_cols=242 Identities=24% Similarity=0.362 Sum_probs=149.3
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..+++|++++|.++.++. +... +|++|++++|.++.++ .+..+ ++|++|++++|.++.+++ +.++++|++|+
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l-~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTC-TTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCC-CcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 456677777777776665 3333 6777777777666653 34444 457777777776666654 55666666666
Q ss_pred ccCCccccccCCCCCCCCCCeEECCCCCCeeeCc--------------------cccCCCCcCceeecccccCcccCccc
Q psy15002 169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS--------------------PALKSLNHLLILNLNHNKISALHSNA 228 (357)
Q Consensus 169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~ 228 (357)
+++|......+.+...++|++|++++|.+..++. ..+..+++|+.+++++|.+..+.+
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence 6666333222223333455555555554444432 013444445555555554444422
Q ss_pred CCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCC
Q psy15002 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308 (357)
Q Consensus 229 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 308 (357)
+..+++|+.|++++|+++.+++ +..+ ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcC-CCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCC
Confidence 4556667777777777666543 4454 67777777777777653 3666777777777777777763 35667778
Q ss_pred CEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
+.|++++|++++.++..+..+++|+.|++++|+++++++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 888888887777777667777788888888888877766
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.9e-28 Score=235.19 Aligned_cols=152 Identities=25% Similarity=0.327 Sum_probs=135.4
Q ss_pred EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173 (357)
Q Consensus 94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (357)
..+-++.+++++|...- .++++|++++|.|+.+++.+|.++ ++|++|++++|.|+.+++++|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 45677778999997652 378999999999999999999998 679999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC-cccCCCCCCCCEEEccCCcCccc
Q psy15002 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH-SNAFQGLDTLEILTIFENKLSLI 248 (357)
Q Consensus 174 l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 248 (357)
++.+|+..|.. ++|++|++++|+++.+++..|.++++|++|++++|.+..+. +..+..+++|++|++++|+++.+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999887654 99999999999999999989999999999999999998753 56677889999999988876543
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.4e-29 Score=243.06 Aligned_cols=261 Identities=18% Similarity=0.227 Sum_probs=180.3
Q ss_pred ceEEEEEecCCCCcC------------------cccccc--CCCcccEEEecCCCcceecCcccccccccceEEEccCCc
Q psy15002 90 LIIFYLKLRHNNLPK------------------LTGFIF--FGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE 149 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~ 149 (357)
..+++|++++|.++. +|.... ...+|++|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCC
Confidence 578899999999998 888776 66699999999999887777777777 568888888887
Q ss_pred -Cce-eChhhhcCC------CCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCe-eeCccccCCCCcCceeeccc
Q psy15002 150 -LTR-VPQTSLSKL------ENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 150 -l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 218 (357)
+++ ..+..+.++ ++|++|++++|.++.+|. .+..+++|++|++++|+++ .++ .+..+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence 775 333345554 777777777777777776 5666677777777777776 444 444445555555555
Q ss_pred ccCcccCcccCCCCC--------------------------CCCEEEccCCcCcccCCCccc-------cccccccEEEc
Q psy15002 219 NKISALHSNAFQGLD--------------------------TLEILTIFENKLSLIEPDSFK-------GLEKKLKRLNL 265 (357)
Q Consensus 219 n~l~~~~~~~l~~l~--------------------------~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l 265 (357)
|++..+ +..+..++ +|+.|++++|.+++..+..+. .. ++|+.|++
T Consensus 363 N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~L 440 (636)
T 4eco_A 363 NQITEI-PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINL 440 (636)
T ss_dssp SEEEEC-CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEEC
T ss_pred Cccccc-cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEEC
Confidence 544433 22233444 455555555555444444443 33 46777777
Q ss_pred cCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCC-------CCCEeecCCCcCcccCcccC-CCCCCCcEEeC
Q psy15002 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH-------NLDSLVLAHNQLRTIPPRVF-AHLPLLNSLEL 337 (357)
Q Consensus 266 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L 337 (357)
++|.++.++...+..+++|++|++++|.++.++...+.... +|+.|++++|+++.+|...+ ..+++|+.|+|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEEC
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEEC
Confidence 77777777766666678888888888888877776654433 88888888888888876654 47888888888
Q ss_pred CCCcccccCcccccCcccc
Q psy15002 338 DGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 338 ~~N~l~~~~~~~~~~l~~l 356 (357)
++|+++++ |..+.++++|
T Consensus 521 s~N~l~~i-p~~~~~l~~L 538 (636)
T 4eco_A 521 SYNSFSKF-PTQPLNSSTL 538 (636)
T ss_dssp CSSCCSSC-CCGGGGCSSC
T ss_pred CCCCCCCc-ChhhhcCCCC
Confidence 88888885 4555566544
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.5e-28 Score=218.04 Aligned_cols=237 Identities=26% Similarity=0.391 Sum_probs=185.7
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecC---------------------cccccccccceEEEccC
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE---------------------SSLSSIGKKLKRLNLGG 147 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~---------------------~~~~~l~~~L~~L~ls~ 147 (357)
..+++|++++|.++.++. +... +|++|++++|.+..++. ..+..+ ++|++|++++
T Consensus 88 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l-~~L~~L~l~~ 164 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM-TGLNYLTVTE 164 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC-TTCCEEECCS
T ss_pred CcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhC-CCCcEEEecC
Confidence 556777777777777652 3333 67777777777665543 012222 3466666666
Q ss_pred CcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc
Q psy15002 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN 227 (357)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 227 (357)
|.+..+++ +..+++|++|++++|.++.++. +...++|+++++++|.+..+++ +..+++|++|++++|.++.+++
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 66665544 6677778888888887777665 4455788888888888887765 7889999999999999998865
Q ss_pred cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCC
Q psy15002 228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307 (357)
Q Consensus 228 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 307 (357)
+..+++|+.|++++|.++.+ ..+..+ ++|+.|++++|.++.++ .+..+++|++|++++|.+++.++..+.++++
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDL-TKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcC-CCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 88999999999999999886 356666 79999999999999884 4788999999999999999998888889999
Q ss_pred CCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343 (357)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~ 343 (357)
|+.|++++|+++++++ +..+++|+.|++++|+++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999888 678999999999999986
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-27 Score=209.72 Aligned_cols=225 Identities=31% Similarity=0.433 Sum_probs=206.3
Q ss_pred cEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCC
Q psy15002 116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQ 194 (357)
Q Consensus 116 ~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~ 194 (357)
+.++.+++.++.++.. ++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ ..++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcC----CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 6788888888888653 23679999999999999999889999999999999999998865544 459999999999
Q ss_pred CC-CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 195 NS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 195 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
|. +..+++..+..+++|++|++++|.+..+.+..+..+++|++|++++|+++.+++..+..+ ++|+.|++++|.++.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC-CCccEEECCCCccccc
Confidence 97 999988899999999999999999999988899999999999999999999988888887 8999999999999999
Q ss_pred CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
++..+..+++|++|++++|.++++.+..+..+++|+.|++++|+++++++..+..+++|+.|++++|++...
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 988899999999999999999999888999999999999999999999988889999999999999999753
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.5e-28 Score=240.24 Aligned_cols=261 Identities=17% Similarity=0.190 Sum_probs=184.9
Q ss_pred ceEEEEEecCCCCcC------------------cccccc--CCCcccEEEecCCCcceecCcccccccccceEEEccCCc
Q psy15002 90 LIIFYLKLRHNNLPK------------------LTGFIF--FGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE 149 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~ 149 (357)
..+++|++++|.++. +|.... ...+|++|++++|.+....+..+..+ ++|++|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCC
Confidence 578899999999998 888764 44589999999999877777777777 578899998887
Q ss_pred -Cce-eChhhhcCC-------CCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 150 -LTR-VPQTSLSKL-------ENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 150 -l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
+++ ..+..+.++ ++|++|++++|.++.+|. .+..+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcC
Confidence 776 223334444 488888888888888777 6667788888888888887666 677777888888888
Q ss_pred ccCcccCcccCCCCCC-CCEEEccCCcCcccCCCccccc------------------------------cccccEEEccC
Q psy15002 219 NKISALHSNAFQGLDT-LEILTIFENKLSLIEPDSFKGL------------------------------EKKLKRLNLGG 267 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~------------------------------~~~L~~L~l~~ 267 (357)
|.+..+ +..+..+++ |+.|++++|+++.++ ..+... .++|+.|++++
T Consensus 605 N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCSCC-CTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred Cccccc-hHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 877754 445666676 777777777766543 222111 02566666666
Q ss_pred CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCC-------CCCCEeecCCCcCcccCcccC-CCCCCCcEEeCCC
Q psy15002 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL-------HNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDG 339 (357)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~ 339 (357)
|.++.++...+..+++|+.|++++|.++.++...+... ++|+.|+|++|+++.+|.... ..+++|+.|+|++
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence 66666665555567778888888888877776555433 278888888888887776553 3677888888888
Q ss_pred CcccccCcccccCcccc
Q psy15002 340 NHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 340 N~l~~~~~~~~~~l~~l 356 (357)
|.++++ |..+.++++|
T Consensus 763 N~L~~l-p~~l~~L~~L 778 (876)
T 4ecn_A 763 NCFSSF-PTQPLNSSQL 778 (876)
T ss_dssp SCCSSC-CCGGGGCTTC
T ss_pred CCCCcc-chhhhcCCCC
Confidence 888775 3444455443
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-28 Score=230.38 Aligned_cols=225 Identities=23% Similarity=0.299 Sum_probs=143.3
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+|++|++++|.++.+.+..+..+ ++|++|++++|.++++++ +.++++|++|++++|.++.++.. ++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 45555555555555544455444 456677777766666554 66667777777777776666543 567777777
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccc-cccccccEEEccCCcCcc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEKKLKRLNLGGNELTR 272 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~ 272 (357)
+|.+..+++. .+++|+.|++++|.++.+.+..+..+++|+.|++++|.+++..+..+. .+ ++|+.|++++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-CcccEEecCCCcccc
Confidence 7777666543 345677777777777766666666667777777777777766555554 33 667777777777776
Q ss_pred cCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc-ccCccccc
Q psy15002 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFS 351 (357)
Q Consensus 273 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~-~~~~~~~~ 351 (357)
+++ ...+++|+.|++++|.++++++. +..+++|+.|++++|.++++|.. +..+++|+.|++++|++. +..+..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 643 33466777777777777776664 55667777777777777776654 456677777777777776 33344444
Q ss_pred Cc
Q psy15002 352 GL 353 (357)
Q Consensus 352 ~l 353 (357)
.+
T Consensus 260 ~l 261 (487)
T 3oja_A 260 KN 261 (487)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=3.2e-27 Score=206.00 Aligned_cols=201 Identities=29% Similarity=0.456 Sum_probs=150.2
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEEC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDL 192 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l 192 (357)
+.+.++++++.++.++... ++++++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4677888888887766432 24688888888888888877788888888888888888888777654 477888888
Q ss_pred CCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcc
Q psy15002 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272 (357)
Q Consensus 193 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 272 (357)
++|.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcCcE
Confidence 8887777777777777777777777777777777777777777777777777777766666666 677777777777777
Q ss_pred cCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 273 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
+++..+..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77666677777777777777777777666766777777777777664
No 55
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.96 E-value=1.9e-28 Score=221.69 Aligned_cols=249 Identities=22% Similarity=0.307 Sum_probs=188.0
Q ss_pred CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002 46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS 124 (357)
Q Consensus 46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~ 124 (357)
+||.. .|.|... .|.|...+++++|..+ +..+++|++++|.|+.+|..+|.+. +|++|++++|.
T Consensus 1 gCp~~----~C~C~~~----~v~C~~~~Lt~iP~~l-------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 1 GCHHR----ICHCSNR----VFLCQESKVTEIPSDL-------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp -CCCS----SSEEETT----EEEEESTTCCSCCTTC-------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCC----ccEeeCC----EEEecCCCCCccCcCc-------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 59873 5999754 8999999998887543 4678899999999999999888877 89999999998
Q ss_pred c-ceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCC-CCCeeeC
Q psy15002 125 L-AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQ-NSLAVVP 201 (357)
Q Consensus 125 l-~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-n~l~~~~ 201 (357)
+ +.++..+|.++..-++.+.+++|+++.++++.|.++++|++|++++|.++.+++..+.. .++..+++.+ +.+..++
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 7 55777788877443445777788899998888899999999999999998887765543 6677787754 6788888
Q ss_pred ccccCCCC-cCceeecccccCcccCcccCCCCCCCCEEEcc-CCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002 202 SPALKSLN-HLLILNLNHNKISALHSNAFQGLDTLEILTIF-ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279 (357)
Q Consensus 202 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 279 (357)
...|..+. .++.|++++|+++.+++..|. ..+|+.+++. +|.++.++.+.|..+ ++|+.|++++|+++.+++..+.
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCCCCCSSSCT
T ss_pred ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcCccChhhhc
Confidence 77777764 577888888888888766654 4578888886 467788877777777 7888888888888888765554
Q ss_pred CCCCCcEEEccC-CcCceeCcCcCCCCCCCCEeecCCC
Q psy15002 280 KLENLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHN 316 (357)
Q Consensus 280 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n 316 (357)
+|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus 224 ---~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 ---NLKKLRARSTYNLKKLPT--LEKLVALMEASLTYP 256 (350)
T ss_dssp ---TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSCH
T ss_pred ---cchHhhhccCCCcCcCCC--chhCcChhhCcCCCC
Confidence 444444333 34666663 566788888888765
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.7e-28 Score=232.21 Aligned_cols=257 Identities=24% Similarity=0.291 Sum_probs=181.8
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS 134 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 134 (357)
.|.|... ....++|...+++.+|..+ +..+++|++++|.++.+|. ...+|++|++++|.++.++.
T Consensus 34 ~~~c~~~-~l~~L~ls~n~L~~lp~~l-------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 34 MRACLNN-GNAVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHH-CCCEEECCSSCCSCCCSCC-------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----
T ss_pred cccccCC-CCcEEEecCCCcCccChhh-------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----
Confidence 4777654 2458889888888776432 3678899999999999887 23489999999999988765
Q ss_pred cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccC--------
Q psy15002 135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALK-------- 206 (357)
Q Consensus 135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------- 206 (357)
.+ ++|++|++++|.++.++. .+++|++|++++|.++.+|... ++|++|++++|+++.++. .+.
T Consensus 99 ~l-~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~ 169 (622)
T 3g06_A 99 LP-PGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPA-LPSELCKLWAY 169 (622)
T ss_dssp CC-TTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCC-CCTTCCEEECC
T ss_pred CC-CCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCC-ccCCCCEEECC
Confidence 22 679999999998888775 5677888888888888877643 678888888887776653 111
Q ss_pred ---------CCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccc
Q psy15002 207 ---------SLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS 277 (357)
Q Consensus 207 ---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 277 (357)
.+++|+.|++++|.++.++. .+++|+.|++++|.++.++. .+++|+.|++++|.++.++
T Consensus 170 ~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 170 NNQLTSLPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCC---
T ss_pred CCCCCCCcccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC-----CCCCCCEEEccCCccCcCC---
Confidence 12445555555555544322 12455555555555554432 1256788888888877766
Q ss_pred ccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002 278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 278 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
..+++|+.|++++|.++.++. .+++|+.|++++|+|+.+|.. +.++++|+.|+|++|++++..+..|..+
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 345778888888888887766 367888888888888888654 5778888889999888888777765544
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=3.7e-27 Score=205.58 Aligned_cols=199 Identities=28% Similarity=0.461 Sum_probs=169.9
Q ss_pred EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174 (357)
Q Consensus 95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 174 (357)
++++++.++.+|.... .++++|++++|.++.++...+..+ ++|++|++++|.++.++...|.++++|++|++++|.+
T Consensus 21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 3333444444444322 356777777777777766666666 6799999999999999998889999999999999999
Q ss_pred ccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002 175 ALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253 (357)
Q Consensus 175 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (357)
+.++...+. .++|++|++++|+++.+++..|..+++|++|++++|.+..+++..+..+++|+.|++++|+++.+++..|
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 999887765 4999999999999999999889999999999999999999988889999999999999999999988888
Q ss_pred ccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus 178 ~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 178 DKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 887 8999999999999999988888999999999999987654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.6e-29 Score=220.98 Aligned_cols=246 Identities=18% Similarity=0.237 Sum_probs=212.1
Q ss_pred CceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002 89 GLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL 167 (357)
Q Consensus 89 ~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 167 (357)
...+++|++++|.++.+++..|... +|++|++++|.++.+.+ +..+ ++|++|++++|.+++++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~Ls~n~l~~l~~-----~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELLV-----GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC-TTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc-CCCCEEECcCCccccccC-----CCCcCEE
Confidence 3678999999999999988777766 89999999999987765 6666 679999999999998764 4899999
Q ss_pred eccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccC-CCCCCCCEEEccCCcCc
Q psy15002 168 ELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF-QGLDTLEILTIFENKLS 246 (357)
Q Consensus 168 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~ 246 (357)
++++|.++.++... .++|++|++++|+++.+++..+..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+++
T Consensus 105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 99999999888665 4789999999999999988889999999999999999998877666 46899999999999999
Q ss_pred ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc-ccCccc
Q psy15002 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIPPRV 325 (357)
Q Consensus 247 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 325 (357)
.++... .+ ++|+.|++++|.++.+++. +..+++|++|++++|.++.++. .+..+++|+.|++++|++. +..+..
T Consensus 183 ~~~~~~--~l-~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 183 DVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp EEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred cccccc--cc-ccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHH
Confidence 885433 24 7999999999999999875 8889999999999999999876 5788999999999999998 555566
Q ss_pred CCCCCCCcEEeCCCC-cccccCccc
Q psy15002 326 FAHLPLLNSLELDGN-HIHTVDPAA 349 (357)
Q Consensus 326 ~~~~~~L~~L~L~~N-~l~~~~~~~ 349 (357)
+..+++|+.++++++ .+++.++..
T Consensus 258 ~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred HhccccceEEECCCchhccCCchhc
Confidence 788889999998854 566655544
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.1e-27 Score=236.05 Aligned_cols=269 Identities=18% Similarity=0.236 Sum_probs=153.3
Q ss_pred hHHHHHhhhc--cCCCceEEEEEecCCCCcCccc--cccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCc
Q psy15002 76 KIQHTMTTLK--SKSGLIIFYLKLRHNNLPKLTG--FIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151 (357)
Q Consensus 76 ~i~~~~~~~~--~~~~~~l~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~ 151 (357)
.+|..+..+. -.....+++|++++|.++.+|. ......+|+.|++++|.++.++ .+..+ ++|++|++++|.++
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L-~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN-VKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT-SEESEEECCSSCCS
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC-CcceEEECcCCccc
Confidence 3666555443 1112467788888888887776 3334447888888888777555 55555 56788888888777
Q ss_pred eeChhhhcCCCC-CcEEeccCCccccccCCCCCC--CCCCeEECCCCCCeeeCccc---cC--CCCcCceeecccccCcc
Q psy15002 152 RVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPA---LK--SLNHLLILNLNHNKISA 223 (357)
Q Consensus 152 ~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~l~~ 223 (357)
.++.. +.++++ |++|++++|.++.+|..+... ++|+.|++++|++....+.. +. .+++|+.|++++|.+..
T Consensus 609 ~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~ 687 (876)
T 4ecn_A 609 EIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687 (876)
T ss_dssp CCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred cchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc
Confidence 66543 677777 788888877777776554433 23666666666654432211 11 22355666666666655
Q ss_pred cCcccCCCCCCCCEEEccCCcCcccCCCcccccc------ccccEEEccCCcCcccCccccc--CCCCCcEEEccCCcCc
Q psy15002 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSLS--KLENLRKLELLHNRIA 295 (357)
Q Consensus 224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 295 (357)
++...+..+++|+.|++++|+++.++...+.... ++|+.|++++|.++.++.. +. .+++|+.|++++|.++
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCS
T ss_pred cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCC
Confidence 5444444556666666666666655444333210 1566666666666655532 32 5566666666666666
Q ss_pred eeCcCcCCCCCCCCEeecCC------CcCcccCcccCCCCCCCcEEeCCCCcccccCcccc
Q psy15002 296 LIEEGDFEGLHNLDSLVLAH------NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350 (357)
Q Consensus 296 ~~~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~ 350 (357)
+++. .+.++++|+.|+|++ |++.+..+..+.++++|+.|+|++|++..++...+
T Consensus 767 ~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 767 SFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp SCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred ccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc
Confidence 5433 344455555555544 44444444444555555555555555544444433
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.8e-27 Score=221.42 Aligned_cols=237 Identities=29% Similarity=0.388 Sum_probs=129.2
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 169 (357)
..+++|++++|.++.+++ .....+|++|++++|.+..+.+ +..+ ++|++|++++|.++.+++ +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCC-CCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 566778888887777766 2223377777777777776654 4554 567777777777777654 667777777777
Q ss_pred cCCccccccC--------------------CCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccC
Q psy15002 170 LHNRIALIEE--------------------GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF 229 (357)
Q Consensus 170 ~~n~l~~~~~--------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 229 (357)
++|.++.++. .+...++|++|++++|.+..++ .+..+++|++|++++|.+....+ +
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--c
Confidence 7776655432 1222355666666666665553 25555666666666666555433 3
Q ss_pred CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC
Q psy15002 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309 (357)
Q Consensus 230 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 309 (357)
..+++|+.|++++|+++.++ .+..+ ++|+.|++++|.++.+++ +..+++|++|++++|.++.+++ +..+++|+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred cccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 44455555555555554431 23333 445555555555544432 4444444444444444444433 33344444
Q ss_pred EeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 310 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
.|++++|+++++++ +..+++|+.|++++|+++++
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 44444444444333 23334444444444444333
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.5e-27 Score=212.33 Aligned_cols=244 Identities=24% Similarity=0.249 Sum_probs=174.8
Q ss_pred CceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 89 GLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 89 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
...++.|++++|.++.+|...+...+|++|++++|.++.++ ..+..+ ++|++|++++|.++.++. .+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l-~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQF-AGLETLTLARNPLRALPA-SIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGG-TTCSEEEEESCCCCCCCG-GGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhcc-CCCCEEECCCCccccCcH-HHhcCcCCCEEE
Confidence 36678899999999988887776557777777777777443 344555 567777777777776654 477777777777
Q ss_pred ccCCcc-ccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002 169 LLHNRI-ALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247 (357)
Q Consensus 169 l~~n~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (357)
+++|.+ +.+|..+.. .. ....+.++++|++|++++|+++.+ +..+..+++|+.|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc
Confidence 777543 344443321 00 012355678888888888888866 4557888888889998888887
Q ss_pred cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCC
Q psy15002 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327 (357)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (357)
+++ .+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+.
T Consensus 221 l~~-~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 221 LGP-AIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCG-GGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred Cch-hhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 644 56666 7899999998888777667788888999999999887777666788889999999999887766666678
Q ss_pred CCCCCcEEeCCCCcccccCcccccCc
Q psy15002 328 HLPLLNSLELDGNHIHTVDPAAFSGL 353 (357)
Q Consensus 328 ~~~~L~~L~L~~N~l~~~~~~~~~~l 353 (357)
++++|+.+++..+.+..+........
T Consensus 299 ~L~~L~~l~l~~~~~~~l~~~~~~~~ 324 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQLDQHRPVAR 324 (328)
T ss_dssp GSCTTCEEECCGGGSCC---------
T ss_pred hccCceEEeCCHHHHHHHhhhhcccc
Confidence 88999999998887777665544433
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.6e-28 Score=230.80 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=151.5
Q ss_pred EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174 (357)
Q Consensus 95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 174 (357)
.+.+++.++.+|...+ .++++|++++|.++.+.+..+..+ ++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 6788999999999765 589999999999999998888888 6799999999999999999999999999999999999
Q ss_pred ccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeeccccc-CcccCcccCCCCCCCCEEEccCCcCcccCCC
Q psy15002 175 ALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPD 251 (357)
Q Consensus 175 ~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 251 (357)
+.+++. +..+++|++|++++|.++.++ +..+..+++|++|++++|. +..+++..+.++++|++|++++|++++..+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 988877 555699999999999998753 3578999999999999998 6777777899999999999999999887665
Q ss_pred ccccc-----------------------cccccEEEccCCcCccc
Q psy15002 252 SFKGL-----------------------EKKLKRLNLGGNELTRV 273 (357)
Q Consensus 252 ~~~~~-----------------------~~~L~~L~l~~n~l~~~ 273 (357)
.+..+ .++|+.|++++|.+++.
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 55432 15677777777776653
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=218.37 Aligned_cols=192 Identities=32% Similarity=0.441 Sum_probs=95.5
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
+|++|++++|.++.++ .+.++++|++|++++|.++.+++ ....++|++|++++|+++.++ .+..+++|+.|++++
T Consensus 178 ~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 178 TLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 252 (466)
T ss_dssp TCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCS
T ss_pred CCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCC
Confidence 4555555555555543 25555666666666665554443 223355555555555555442 344555555555555
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 298 (357)
|.+....+ +..+++|+.|++++|+++.+++ +..+ ++|+.|++++|.++++++ +..+++|+.|++++|++++++
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 55554433 4455555555555555554432 3333 455555555555554432 444455555555555554443
Q ss_pred cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccC
Q psy15002 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346 (357)
Q Consensus 299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~ 346 (357)
+ +..+++|+.|++++|++++++ .+..+++|+.|++++|++++..
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred h--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence 3 333444444444444444442 1344444444444444444443
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.1e-27 Score=211.75 Aligned_cols=214 Identities=22% Similarity=0.254 Sum_probs=171.3
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
..++.|++++|.++.++.. +.++++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECC
Confidence 3467777777777766654 555777777777777777776666666777777777777775543 56777777777777
Q ss_pred cccCcccCcccC---------CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEE
Q psy15002 218 HNKISALHSNAF---------QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288 (357)
Q Consensus 218 ~n~l~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 288 (357)
+|.+....+..+ .++++|+.|++++|+++.+ +..+..+ ++|+.|++++|.++++++ .+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l-~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANL-QNLKSLKIRNSPLSALGP-AIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGGGC-TTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhcCC-CCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence 765554444444 3489999999999999976 4567777 899999999999999886 488999999999
Q ss_pred ccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+++|.+.+..+..+.++++|+.|++++|.+.+..+..+.++++|+.|+|++|++.+..|+.+++++++
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 99999988888889999999999999998887666667899999999999999999999999998865
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.3e-26 Score=212.53 Aligned_cols=230 Identities=20% Similarity=0.229 Sum_probs=128.1
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..+++|++++|.++.++ +... +|++|++++|.++.++ +..+ ++|++|++++|.++.++ +.++++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~L~~N~l~~l~---~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPL-TKLTYLNCDTNKLTKLD---VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC-TTCCEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCC-CcCCEEECCCCcCCeec---CCCCCcCCEEE
Confidence 44556666666666654 2222 5666666666665552 3333 45666666666666653 55666666666
Q ss_pred ccCCccccccCCCCCCCCCCeEECCCCC-CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002 169 LLHNRIALIEEGDFEGKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247 (357)
Q Consensus 169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (357)
+++|.++.++ +...++|++|++++|+ +..+ .+..+++|++|++++|+++.++ +..+++|+.|++++|+++.
T Consensus 134 l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred CCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe
Confidence 6666666553 3444566666666663 3333 2455666666666666666653 5556666666666666665
Q ss_pred cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc----
Q psy15002 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP---- 323 (357)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---- 323 (357)
++ +..+ ++|+.|++++|++++++ +..+++|+.|++++|++++++...+ ++|+.|++++|+++.+.-
T Consensus 206 ~~---l~~l-~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l---~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 206 LD---LNQN-IQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CC---CTTC-TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTC---TTCCEEECTTCCCSCCCCTTCT
T ss_pred ec---cccC-CCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHC---CCCCEEeccCCCCCEEECCCCc
Confidence 52 4444 56666666666666654 5556666666666666666654333 333333333333322110
Q ss_pred ----ccCCCCCCCcEEeCCCCcccccCc
Q psy15002 324 ----RVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 324 ----~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
..+..+++|+.|++++|+..+..+
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred cCCcccccccccCCEEECCCCcccceec
Confidence 013455677777777775444333
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-27 Score=223.00 Aligned_cols=257 Identities=18% Similarity=0.250 Sum_probs=216.9
Q ss_pred EEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEE
Q psy15002 66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLN 144 (357)
Q Consensus 66 ~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ 144 (357)
...........+|..+..+... +..+++|++++|.++.+++..|... +|++|++++|.++.+.+ +..+ ++|++|+
T Consensus 11 ~~~~~~~~~~~l~~~l~~l~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~ 86 (487)
T 3oja_A 11 RYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLD 86 (487)
T ss_dssp EEEEESCCTTTHHHHHHTTSTT-GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEE
T ss_pred eeecccCchhhhHHHHHHhccc-CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEE
Confidence 3444455556677776665432 3689999999999999998888776 89999999999987765 6666 6799999
Q ss_pred ccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCccc
Q psy15002 145 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224 (357)
Q Consensus 145 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 224 (357)
+++|.++++++ .++|++|++++|.++.++... .++|++|++++|.++.+.+..+..+++|+.|++++|.++..
T Consensus 87 Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CCSSEEEEEEE-----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred ecCCcCCCCCC-----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 99999998864 389999999999999888764 37899999999999999888899999999999999999998
Q ss_pred CcccCC-CCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002 225 HSNAFQ-GLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303 (357)
Q Consensus 225 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 303 (357)
.+..+. .+++|+.|++++|.++++++.. .+ ++|+.|++++|.++++++. +..+++|+.|++++|.+++++. .+.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~ 234 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR 234 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred ChHHHhhhCCcccEEecCCCccccccccc--cC-CCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhc
Confidence 777775 7899999999999999885433 34 7999999999999999875 8889999999999999999877 477
Q ss_pred CCCCCCEeecCCCcCc-ccCcccCCCCCCCcEEeCC
Q psy15002 304 GLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELD 338 (357)
Q Consensus 304 ~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~ 338 (357)
.+++|+.|++++|.+. +..+..+..++.|+.++++
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8899999999999998 4444456777778877775
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.3e-26 Score=199.45 Aligned_cols=231 Identities=25% Similarity=0.337 Sum_probs=154.7
Q ss_pred CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc
Q psy15002 55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS 134 (357)
Q Consensus 55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 134 (357)
||.|... ...+.|...++.++|..+ +..+++|++++|.++.++ ...+.
T Consensus 2 ~C~~~~~--~~~~~c~~~~l~~ip~~l-------~~~l~~L~ls~n~l~~~~-----------------------~~~~~ 49 (276)
T 2z62_A 2 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLG-----------------------SYSFF 49 (276)
T ss_dssp CSEEEET--TTEEECTTSCCSSCCSSS-------CTTCCEEECTTCCCCEEC-----------------------TTTTT
T ss_pred CceeccC--CceEEecCCCccccCCCC-------CCCccEEECCCCcccccC-----------------------HhHhc
Confidence 6888754 348899887776666422 234445555555554444 44444
Q ss_pred cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCce
Q psy15002 135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLI 213 (357)
Q Consensus 135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 213 (357)
.+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|.+..+++..+..+++|++
T Consensus 50 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 50 SF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 44 4566666666666666666666666677777776666666544333 366777777777776666656677777777
Q ss_pred eecccccCcccC-cccCCCCCCCCEEEccCCcCcccCCCcccccccccc----EEEccCCcCcccCcccccCCCCCcEEE
Q psy15002 214 LNLNHNKISALH-SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK----RLNLGGNELTRVPQTSLSKLENLRKLE 288 (357)
Q Consensus 214 L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~ 288 (357)
|++++|.+..+. +..+..+++|+.|++++|+++.+.+..+..+ .+++ .|++++|.++.+++..+.. .+|++|+
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~ 206 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELA 206 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEE
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCccccCC-CcccEEE
Confidence 777777776643 5667777777777777777777766666555 4555 7778888887777654443 4788888
Q ss_pred ccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320 (357)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 320 (357)
+++|.++++++..+..+++|+.|++++|++..
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88888888777777777888888888887763
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=2e-26 Score=201.11 Aligned_cols=206 Identities=25% Similarity=0.340 Sum_probs=155.5
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
++|+.|++++|.++.++. +..+++|++|++++|.++.++ .+...++|++|++++|.++.+++..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 467777777777776653 677777888888887777654 44555778888888888777777677777888888888
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
+|+++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|.++.+++..+..+++|++|++++|.++++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 888877777777777888888888888877776666666 6788888888888877776677778888888888888887
Q ss_pred CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002 298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
++..+..+++|+.|++++|.+. ..++.++.+++++|.++|..|..++.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7777777888888888888654 2355677788888888877777766654
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=2.3e-26 Score=196.92 Aligned_cols=199 Identities=19% Similarity=0.346 Sum_probs=179.7
Q ss_pred CceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCC-CeeeCccccCCCCcCceeeccc-ccCcccCc
Q psy15002 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNH-NKISALHS 226 (357)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 226 (357)
++.+|. + .++|++|++++|.++.+++..+. .++|++|++++|+ ++.+++..|.++++|++|++++ |.++.+++
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555654 2 34899999999999999987664 4999999999997 9999998999999999999999 99999988
Q ss_pred ccCCCCCCCCEEEccCCcCcccCCCcccccccccc---EEEccCC-cCcccCcccccCCCCCc-EEEccCCcCceeCcCc
Q psy15002 227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK---RLNLGGN-ELTRVPQTSLSKLENLR-KLELLHNRIALIEEGD 301 (357)
Q Consensus 227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~ 301 (357)
..|.++++|+.|++++|+++.++. +..+ ++++ .|++++| .++.+++..+..+++|+ +|++++|+++.++...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~--~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD--LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC--CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc--cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 899999999999999999998754 6666 6787 9999999 99999988899999999 9999999999999988
Q ss_pred CCCCCCCCEeecCCCc-CcccCcccCCCC-CCCcEEeCCCCcccccCcccccCcccc
Q psy15002 302 FEGLHNLDSLVLAHNQ-LRTIPPRVFAHL-PLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 302 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+.. ++|+.|++++|+ ++.+++..|..+ ++|+.|++++|+++++++..|.+++.|
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCcee
Confidence 876 899999999995 999999999999 999999999999999999988888765
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.4e-25 Score=197.33 Aligned_cols=198 Identities=28% Similarity=0.344 Sum_probs=143.3
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+++++++.++.++.++.... +++++|++++|.++.+++..|.++++|++|++++|.++.++.. ...++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 67788888888877764432 4688888888888888777788888888888888888877664 445777777777
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
+|+++.++. .+..+++|++|++++|+++.+++..|.++++|+.|++++|+++.+++..|..+ ++|+.|++++|+++.+
T Consensus 86 ~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCC
T ss_pred CCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-cCCCEEECCCCcCCcc
Confidence 777776654 55667777777777777777766677777777777777777777766666666 6777777777777777
Q ss_pred CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
++..+..+++|+.|++++|+++.++...+ ..++|+.+++++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc
Confidence 76666667777777777777776666433 3556777777777654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.9e-25 Score=196.57 Aligned_cols=198 Identities=27% Similarity=0.280 Sum_probs=173.6
Q ss_pred EEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccC
Q psy15002 92 IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 171 (357)
Q Consensus 92 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 171 (357)
++.++++++.++.+|...+ .+++.|++++|.++.+.+..+..+ ++|++|++++|.++.++.. ..+++|++|++++
T Consensus 12 l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH 86 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC--SCCTTCCEEECCS
T ss_pred ccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC--CCCCcCCEEECCC
Confidence 3456666666777766554 367888888888888888888877 6799999999999998764 7899999999999
Q ss_pred CccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCC
Q psy15002 172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251 (357)
Q Consensus 172 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 251 (357)
|.++.+|..+...++|++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+++|+.|++++|+++.+++.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 99999998887789999999999999999988999999999999999999999998899999999999999999999888
Q ss_pred ccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296 (357)
Q Consensus 252 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 296 (357)
.|..+ ++|+.|++++|.++.++.. +....+|+.+++++|.+..
T Consensus 167 ~~~~l-~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 LLNGL-ENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTC-TTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred HhcCc-CCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccC
Confidence 88887 8999999999999998865 5567799999999998764
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.1e-25 Score=206.57 Aligned_cols=226 Identities=22% Similarity=0.248 Sum_probs=189.3
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 169 (357)
..+++|++++|.++.+| ......+|++|++++|.++.++ +..+ ++|++|++++|.+++++ +.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l-~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQN-TNLTYLACDSNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccC-CCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence 56789999999999987 3333348999999999999874 5555 67999999999999984 789999999999
Q ss_pred cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccccc-CcccCcccCCCCCCCCEEEccCCcCccc
Q psy15002 170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLI 248 (357)
Q Consensus 170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (357)
++|.++.++ +...++|++|++++|+++.++ +..+++|++|++++|. +..+ .+..+++|+.|++++|+++.+
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 999999885 666799999999999999874 7789999999999994 4444 477889999999999999997
Q ss_pred CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328 (357)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 328 (357)
+ +..+ ++|+.|++++|.++.++ +..+++|++|++++|++++++ +..+++|+.|++++|++++++...
T Consensus 186 ~---l~~l-~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~--- 252 (457)
T 3bz5_A 186 D---VSQN-KLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST--- 252 (457)
T ss_dssp C---CTTC-TTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTT---
T ss_pred c---cccC-CCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHH---
Confidence 4 5566 79999999999999884 778899999999999999976 677899999999999999988544
Q ss_pred CCCCcEEeCCCCcccc
Q psy15002 329 LPLLNSLELDGNHIHT 344 (357)
Q Consensus 329 ~~~L~~L~L~~N~l~~ 344 (357)
+++|+.|++++|.++.
T Consensus 253 l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLE 268 (457)
T ss_dssp CTTCCEEECTTCCCSC
T ss_pred CCCCCEEeccCCCCCE
Confidence 4555544444444433
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=3.9e-25 Score=190.60 Aligned_cols=177 Identities=29% Similarity=0.447 Sum_probs=95.5
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
..++++++++.++.++... .+++++|++++|.++.+++..+. +++|++|++++|.++.+++..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3555666666666555431 14555666666665555443332 2555555555555555555555555555555555
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
+|+++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|+++.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 555555555555555555555555555555544444444 4555555555555555544455555555555555555555
Q ss_pred CcCcCCCCCCCCEeecCCCcCc
Q psy15002 298 EEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 298 ~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
++..+..+++|+.|++++|++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 5545555555555555555554
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=209.76 Aligned_cols=230 Identities=22% Similarity=0.270 Sum_probs=175.3
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 169 (357)
..++.|++++|.++.+|...+ .+|+.|++++|.++.++. ..++|++|++++|.++.++. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 347899999999999998776 589999999999998776 23679999999999999886 6899999999
Q ss_pred cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCC-----------------C
Q psy15002 170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQG-----------------L 232 (357)
Q Consensus 170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----------------l 232 (357)
++|.++.+|. ..++|++|++++|+++.++. .+++|++|++++|.++.++. .+.. +
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccC
Confidence 9999999887 45889999999999999875 24889999999998887643 2211 1
Q ss_pred CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEee
Q psy15002 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV 312 (357)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 312 (357)
++|+.|++++|.++.++.. +++|+.|++++|.++.++. .+++|++|++++|.++.++ ..+++|+.|+
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~ 247 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELM 247 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCCCc-----cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEE
Confidence 4445555555554443221 1455555555555555442 2367888888888888876 3468899999
Q ss_pred cCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 313 L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+++|+|+.+|. .+++|+.|+|++|.++.++ ..|.++++|
T Consensus 248 Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L 286 (622)
T 3g06_A 248 VSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSE 286 (622)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTT
T ss_pred CCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhcccc
Confidence 99999998876 4578999999999999775 557776654
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3e-27 Score=210.52 Aligned_cols=231 Identities=17% Similarity=0.135 Sum_probs=186.7
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeC-hhhhc-------CCCCCcEEeccCCccc-cccCCC--C
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP-QTSLS-------KLENLRKLELLHNRIA-LIEEGD--F 182 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~-~~~~~-------~l~~L~~L~l~~n~l~-~~~~~~--~ 182 (357)
+++.+++.+|.+ .++. .+. ..|++|++++|.++... +..+. ++++|++|++++|.++ .+|..+ .
T Consensus 44 ~L~~l~l~~n~l-~~p~-~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLG-QFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT-CCCH-HHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc-ccHH-HHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 788999999998 4442 222 44999999999996522 22233 6999999999999998 577766 4
Q ss_pred CCCCCCeEECCCCCCeeeCccccCCC-----CcCceeecccccCcccCcccCCCCCCCCEEEccCCcCccc---C-CCcc
Q psy15002 183 EGKALTQLDLSQNSLAVVPSPALKSL-----NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI---E-PDSF 253 (357)
Q Consensus 183 ~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~-~~~~ 253 (357)
..++|++|++++|+++.+ +..+..+ ++|++|++++|++..+++..+..+++|++|++++|++.+. . ...+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 559999999999999988 4566665 8999999999999999989999999999999999997653 1 1123
Q ss_pred ccccccccEEEccCCcCccc---CcccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002 254 KGLEKKLKRLNLGGNELTRV---PQTSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329 (357)
Q Consensus 254 ~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (357)
..+ ++|+.|++++|.++.+ +...+..+++|++|++++|.+++.++ ..+..+++|+.|++++|+++.+|...+
T Consensus 198 ~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--- 273 (312)
T 1wwl_A 198 LKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--- 273 (312)
T ss_dssp TSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---
T ss_pred ccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---
Confidence 556 7999999999999954 33445678999999999999999763 456678999999999999999987654
Q ss_pred CCCcEEeCCCCcccccCcccccCcccc
Q psy15002 330 PLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 330 ~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
++|+.|++++|++++++. |..+++|
T Consensus 274 ~~L~~L~Ls~N~l~~~p~--~~~l~~L 298 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS--PDELPQV 298 (312)
T ss_dssp SEEEEEECCSSCCCSCCC--TTTSCEE
T ss_pred CCceEEECCCCCCCCChh--HhhCCCC
Confidence 899999999999999943 7776654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.9e-25 Score=193.72 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=183.6
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
++..+++.++.+..... ...+++|++|++++|.++.++. +...++|++|++++|.++.++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccc--cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCC
Confidence 46677788888777643 6788999999999999988764 556699999999999999874 688999999999999
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 298 (357)
|.++.+++..+..+++|++|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|++++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99999988889999999999999999999988888888 89999999999999999888899999999999999999999
Q ss_pred cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
+..+..+++|+.|++++|+++++++..+..+++|+.|++++|++.+..+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9888999999999999999999999888999999999999999987654
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.8e-24 Score=202.02 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=133.5
Q ss_pred EEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEc
Q psy15002 66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145 (357)
Q Consensus 66 ~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~l 145 (357)
.+++.+.+++.+|.. +..+++|++++|.++.+|... .+|++|++++|.++.++. .+++|++|++
T Consensus 75 ~L~l~~~~l~~lp~~--------~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L 138 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL--------PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGV 138 (454)
T ss_dssp EEECTTSCCSCCCSC--------CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEEC
T ss_pred EEEecCCccccCCCC--------cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccC-----CCCCCCEEEC
Confidence 677777776665531 367889999999988887532 478888888888877643 2256888888
Q ss_pred cCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC
Q psy15002 146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH 225 (357)
Q Consensus 146 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 225 (357)
++|.+++++ .+.++++|++|++++|.++.+|... .+|++|++++|+++.++ .+..+++|++|++++|+++.++
T Consensus 139 ~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 139 SNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred cCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC
Confidence 888888876 3888888888888888888776543 47888888888887765 4677777777777777776643
Q ss_pred cccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 226 SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 226 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
.. .++|+.|++++|+++.++ .+..+ ++|+.|++++|.+++++.. +++|++|++++|.++++
T Consensus 212 ~~----~~~L~~L~l~~n~l~~lp--~~~~l-~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 212 DL----PLSLESIVAGNNILEELP--ELQNL-PFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CC----CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCC
T ss_pred CC----cCcccEEECcCCcCCccc--ccCCC-CCCCEEECCCCcCCccccc----ccccCEEECCCCccccc
Confidence 21 146666666666666543 24444 5566666666666554421 24455555555544443
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.93 E-value=6.2e-25 Score=195.06 Aligned_cols=191 Identities=28% Similarity=0.409 Sum_probs=94.2
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
+|++|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 3555555555554443 24445555555555555554444 333345555555555554443 344455555555555
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 298 (357)
|+++.+++ +..+++|+.|++++|+++.+.+ +..+ ++|+.|++++|.++.+++ +..+++|+.|++++|.+++++
T Consensus 117 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 55544422 4445555555555555544432 3333 455555555555554443 444555555555555555544
Q ss_pred cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
+ +..+++|+.|++++|+++++++ +..+++|+.|++++|++++.
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 3 3445555555555555555443 34455555555555555443
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=6.4e-25 Score=198.57 Aligned_cols=239 Identities=19% Similarity=0.291 Sum_probs=200.4
Q ss_pred EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcC-ceeChhhhcCCCCCcE-Eecc
Q psy15002 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL-TRVPQTSLSKLENLRK-LELL 170 (357)
Q Consensus 93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~-L~l~ 170 (357)
+.++.++++++++|...+ .++++|++++|+++.++..+|.++ ++|++|++++|.+ +.++.++|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 367889999999998764 378999999999999999999988 6799999999997 5588888999998876 6667
Q ss_pred CCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeeccc-ccCcccCcccCCCCC-CCCEEEccCCcCcc
Q psy15002 171 HNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH-NKISALHSNAFQGLD-TLEILTIFENKLSL 247 (357)
Q Consensus 171 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 247 (357)
+|+++.+++..|.. ++|++|++++|++..+++..+....++..+++.+ +.+..++...|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 89999998887665 9999999999999999887777777888888865 678888888887775 68899999999999
Q ss_pred cCCCccccccccccEEEcc-CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccC
Q psy15002 248 IEPDSFKGLEKKLKRLNLG-GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326 (357)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 326 (357)
+++..|.. .+++.+++. +|.++.+++..|..+++|++|++++|+++.++...+.++++|+.++ .+.++.+|+ +
T Consensus 169 i~~~~f~~--~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~--~~~l~~lP~--l 242 (350)
T 4ay9_X 169 IHNSAFNG--TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPT--L 242 (350)
T ss_dssp ECTTSSTT--EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT--CTTCCCCCC--T
T ss_pred CChhhccc--cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc--CCCcCcCCC--c
Confidence 98888766 579999997 5889999988899999999999999999999987665444444333 345788886 6
Q ss_pred CCCCCCcEEeCCCC
Q psy15002 327 AHLPLLNSLELDGN 340 (357)
Q Consensus 327 ~~~~~L~~L~L~~N 340 (357)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88999999999865
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.2e-24 Score=203.22 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=138.2
Q ss_pred cEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCC
Q psy15002 116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQN 195 (357)
Q Consensus 116 ~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 195 (357)
++|++++|.++.++. .+++|++|++++|.+++++. .+++|++|++++|.++.++... ++|++|++++|
T Consensus 74 ~~L~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n 141 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN 141 (454)
T ss_dssp SEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred CEEEecCCccccCCC-----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCC
Confidence 666776666666543 22467777777777777653 2366777777777777655422 57777777777
Q ss_pred CCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc
Q psy15002 196 SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275 (357)
Q Consensus 196 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 275 (357)
+++.++ .+..+++|++|++++|+++.++. . .++|++|++++|++++++ .+..+ ++|+.|++++|.+++++.
T Consensus 142 ~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l-~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 142 QLEKLP--ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNL-PFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CCSSCC--CCTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEECCSSCCSSCCC
T ss_pred CCCCCc--ccCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCc--cccCC-CCCCEEECCCCcCCcCCC
Confidence 777765 47777777888887777776532 2 247777888877777753 35566 678888888887777653
Q ss_pred ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 276 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
. .++|++|++++|.++.++. +..+++|+.|++++|++++++.. .++|+.|++++|.+++++.
T Consensus 213 ~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 213 L----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp C----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCC
T ss_pred C----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccCc
Confidence 2 2577888888888876663 67788888888888888877642 3677777777777777543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=196.80 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=181.2
Q ss_pred CCCcccEEEecCCCcceecCcc---cccccccceEEEccCCcCceeChhhh--cCCCCCcEEeccCCccccccC-----C
Q psy15002 111 FGLDIRHLTIHNSSLAVVEESS---LSSIGKKLKRLNLGGNELTRVPQTSL--SKLENLRKLELLHNRIALIEE-----G 180 (357)
Q Consensus 111 ~~~~L~~L~l~~~~l~~~~~~~---~~~l~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-----~ 180 (357)
....++.+.+.++.+....... +... ++|++|++++|.+.+..+..+ .++++|++|++++|.++...+ .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3346788888888765322111 1112 469999999999998777767 899999999999999985322 2
Q ss_pred CCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc---cC-cccCCCCCCCCEEEccCCcCcccCCC---cc
Q psy15002 181 DFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA---LH-SNAFQGLDTLEILTIFENKLSLIEPD---SF 253 (357)
Q Consensus 181 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~ 253 (357)
....++|++|++++|++..+++..+..+++|++|++++|++.. +. ...+..+++|++|++++|+++.++.. .+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 3346899999999999999998899999999999999999764 22 22346789999999999999865432 23
Q ss_pred ccccccccEEEccCCcCcccCcccccCC---CCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCC
Q psy15002 254 KGLEKKLKRLNLGGNELTRVPQTSLSKL---ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330 (357)
Q Consensus 254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 330 (357)
..+ ++|+.|++++|.+++..+..+..+ ++|++|++++|+++.++... .++|+.|++++|++++++. +..++
T Consensus 221 ~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~--~~~l~ 294 (310)
T 4glp_A 221 AAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ--PDELP 294 (310)
T ss_dssp HHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC--TTSCC
T ss_pred hcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch--hhhCC
Confidence 455 799999999999999854445554 79999999999999887643 3899999999999999865 57889
Q ss_pred CCcEEeCCCCccccc
Q psy15002 331 LLNSLELDGNHIHTV 345 (357)
Q Consensus 331 ~L~~L~L~~N~l~~~ 345 (357)
+|+.|++++|++++.
T Consensus 295 ~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 295 EVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCSCEECSSTTTSCC
T ss_pred CccEEECcCCCCCCC
Confidence 999999999999763
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2e-24 Score=186.22 Aligned_cols=156 Identities=28% Similarity=0.439 Sum_probs=80.3
Q ss_pred ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
+++|++++|.++.+.+..|.++++|++|++++|.++.+++..+. .++|++|++++|+++.+++..|..+++|++|++++
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence 44444444444444444444444444444444444444433322 24444444444444444444455555555555555
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 296 (357)
|+++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.++.
T Consensus 117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 55555555555555555555555555555554445544 455555555555555555555555566666666665543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.2e-23 Score=186.85 Aligned_cols=193 Identities=25% Similarity=0.406 Sum_probs=102.4
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
++++|+++++.++.++ .+..+ ++|++|++++|.++.+++ +.++++|++|++++|.++.++ .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 3444444444444432 22222 345555555555555544 555555555555555555543 23334555555555
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
+|+++.++. +..+++|++|++++|.++.+++ +..+++|+.|++++|+++.+.+ +..+ ++|+.|++++|.++.+
T Consensus 116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCC
T ss_pred CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCcC
Confidence 555555442 5555555556665555555433 4455556666666655555433 4444 4556666666655555
Q ss_pred CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323 (357)
Q Consensus 274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 323 (357)
++ +..+++|++|++++|+++++++ +..+++|+.|++++|+++..+.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 43 4555556666666666555543 4555566666666665555443
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=5e-25 Score=200.26 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=160.3
Q ss_pred EEecCCCCcCccccccCCC-cccEEEecCCCcceecC----cccccccccceEEEccCCcCceeChhhhcCC-----CCC
Q psy15002 95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE----SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENL 164 (357)
Q Consensus 95 L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~----~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L 164 (357)
.++++|+++...+..+... +|++|++++|.++.... ..+..++.+|++|++++|.++...+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4666777765544444444 47777777777777665 4455553267888888887777766666554 778
Q ss_pred cEEeccCCccccccCC-----CCCC-CCCCeEECCCCCCeeeCccc----cCC-CCcCceeecccccCcccCccc----C
Q psy15002 165 RKLELLHNRIALIEEG-----DFEG-KALTQLDLSQNSLAVVPSPA----LKS-LNHLLILNLNHNKISALHSNA----F 229 (357)
Q Consensus 165 ~~L~l~~n~l~~~~~~-----~~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~~~~----l 229 (357)
++|++++|.++..+.. +... ++|++|++++|+++...... +.. ..+|++|++++|.++...... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888877754433 2222 57788888888777666543 233 247888888888777433322 2
Q ss_pred CCCC-CCCEEEccCCcCcccCCCccc----cccccccEEEccCCcCcccCcc----cccC-CCCCcEEEccCCcCceeCc
Q psy15002 230 QGLD-TLEILTIFENKLSLIEPDSFK----GLEKKLKRLNLGGNELTRVPQT----SLSK-LENLRKLELLHNRIALIEE 299 (357)
Q Consensus 230 ~~l~-~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~n~l~~~~~ 299 (357)
...+ +|+.|++++|+++...+..+. ..+++|+.|++++|.++..... .+.. .++|++|++++|.++..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3343 788888888877766543332 2213788888888877763221 2322 3578888888888777654
Q ss_pred ----CcCCCCCCCCEeecCCCcCcccCcc-------cCCCCCCCcEEeCCCCccccc
Q psy15002 300 ----GDFEGLHNLDSLVLAHNQLRTIPPR-------VFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 300 ----~~~~~~~~L~~L~L~~n~l~~~~~~-------~~~~~~~L~~L~L~~N~l~~~ 345 (357)
..+..+++|+.|++++|.+..+... .+..+++|+.||+++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2345567788888888875544432 355667788888888877665
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.5e-23 Score=174.06 Aligned_cols=130 Identities=29% Similarity=0.445 Sum_probs=73.1
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 216 (357)
++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++++|+++.+++..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3466677777776666666666667777777776666666554432 255555555555555555444555555555555
Q ss_pred ccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCC
Q psy15002 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268 (357)
Q Consensus 217 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 268 (357)
++|+++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-CCccEEEecCC
Confidence 5555555544445555555555555555554444434443 44555555444
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.90 E-value=1.7e-23 Score=190.06 Aligned_cols=191 Identities=25% Similarity=0.328 Sum_probs=146.0
Q ss_pred ccccccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEE
Q psy15002 40 LLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLT 119 (357)
Q Consensus 40 ~~~~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~ 119 (357)
.+.+...||. .|.|... .++|...+++.+| ..... .++.|+
T Consensus 5 ~~~~~~~Cp~-----~C~C~~~----~l~c~~~~l~~iP----------------------------~~~~~--~l~~L~ 45 (361)
T 2xot_A 5 SGRSVVSCPA-----NCLCASN----ILSCSKQQLPNVP----------------------------QSLPS--YTALLD 45 (361)
T ss_dssp --CCCTTCCT-----TCEEETT----EEECCSSCCSSCC----------------------------SSCCT--TCSEEE
T ss_pred cCCcCCCCCC-----CCEECCC----EEEeCCCCcCccC----------------------------ccCCC--CCCEEE
Confidence 3455678998 6999743 6777766555444 32221 356666
Q ss_pred ecCCCcceecCcccc-cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCC
Q psy15002 120 IHNSSLAVVEESSLS-SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197 (357)
Q Consensus 120 l~~~~l~~~~~~~~~-~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l 197 (357)
+++|.++.+....+. .+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|++
T Consensus 46 Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp CCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 666666666666665 44 67999999999999999888999999999999999999888876554 8899999999999
Q ss_pred eeeCccccCCCCcCceeecccccCcccCcccC---CCCCCCCEEEccCCcCcccCCCcccccccc--ccEEEccCCcCc
Q psy15002 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAF---QGLDTLEILTIFENKLSLIEPDSFKGLEKK--LKRLNLGGNELT 271 (357)
Q Consensus 198 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--L~~L~l~~n~l~ 271 (357)
..+.+..|..+++|+.|++++|+++.++...| ..+++|+.|++++|+++.++...+..+ +. ++.|++++|.+.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence 99888888889999999999999988877776 568889999999999888876666665 33 477888888775
No 87
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.90 E-value=9.8e-22 Score=180.12 Aligned_cols=248 Identities=16% Similarity=0.263 Sum_probs=223.2
Q ss_pred EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173 (357)
Q Consensus 94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (357)
.+.+. +.++.|+..+|.+.+|+.+.+.++ ++.+...+|.+. +|+.+.+.. .++.+...+|.++++|+.+++.+|.
T Consensus 117 ~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 117 EIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp EEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC
T ss_pred EEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc
Confidence 34443 467888999998889999999877 999999999984 599999996 7999999999999999999999999
Q ss_pred cccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253 (357)
Q Consensus 174 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (357)
++.++.+.|...+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++.+...+|
T Consensus 192 l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF 267 (401)
T 4fdw_A 192 ITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAF 267 (401)
T ss_dssp CSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTT
T ss_pred ceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHh
Confidence 999999999999999999984 599999999999999999999875 78888899988 89999999 456889999999
Q ss_pred ccccccccEEEccCCcCc-----ccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002 254 KGLEKKLKRLNLGGNELT-----RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328 (357)
Q Consensus 254 ~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 328 (357)
..+ ++|+.+++.+|.+. .++..+|..+++|+.+.+. +.++.++..+|.++++|+.+++..| ++.+...+|.+
T Consensus 268 ~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 268 YYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp TTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred hCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 988 89999999988776 6888899999999999999 5599999999999999999999655 99999999999
Q ss_pred CCCCcEEeCCCCcccccCcccccCcc
Q psy15002 329 LPLLNSLELDGNHIHTVDPAAFSGLE 354 (357)
Q Consensus 329 ~~~L~~L~L~~N~l~~~~~~~~~~l~ 354 (357)
+ +|+.+++.+|.+..+.+..|.+++
T Consensus 345 ~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp S-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred C-CCCEEEEcCCCCcccccccccCCC
Confidence 9 999999999999999999999875
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.2e-23 Score=170.64 Aligned_cols=170 Identities=27% Similarity=0.331 Sum_probs=96.3
Q ss_pred eEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccc
Q psy15002 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219 (357)
Q Consensus 141 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 219 (357)
+.++.+++.++.++.. -.++|++|++++|.++.+++..+ ..++|++|++++|+++.+++..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4556666666666543 23456666666666666655544 2356666666666666655555555666666666666
Q ss_pred cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002 220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 299 (357)
Q Consensus 220 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 299 (357)
+++.+++..+..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++++++..+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 6665555555555666666666666655555445444 455666666665555555445555555555555554332
Q ss_pred CcCCCCCCCCEeecCCCcCccc
Q psy15002 300 GDFEGLHNLDSLVLAHNQLRTI 321 (357)
Q Consensus 300 ~~~~~~~~L~~L~L~~n~l~~~ 321 (357)
.+++|+.|+++.|++++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTT
T ss_pred ----CCCCHHHHHHHHHhCCce
Confidence 234555555555555543
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=6.2e-23 Score=173.12 Aligned_cols=163 Identities=23% Similarity=0.422 Sum_probs=108.4
Q ss_pred ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCC
Q psy15002 44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNS 123 (357)
Q Consensus 44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~ 123 (357)
+..||. .|.|... .+.|.+.+++++| .... .+++.|++++|
T Consensus 2 ~~~CP~-----~C~C~~~----~v~c~~~~l~~iP----------------------------~~l~--~~l~~L~l~~n 42 (220)
T 2v9t_B 2 SLHCPA-----ACTCSNN----IVDCRGKGLTEIP----------------------------TNLP--ETITEIRLEQN 42 (220)
T ss_dssp CCCSCT-----TSEEETT----EEECTTSCCSSCC----------------------------SSCC--TTCCEEECCSS
T ss_pred CCCCCC-----CCEECCC----EEEcCCCCcCcCC----------------------------CccC--cCCCEEECCCC
Confidence 457998 6999754 7778766655544 2221 24555555555
Q ss_pred CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCc
Q psy15002 124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPS 202 (357)
Q Consensus 124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 202 (357)
.++.+++..|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++..|. +++|++|++++|+++.+++
T Consensus 43 ~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 43 TIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp CCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 5555555555555 4577777777777777666777777777777777777777766554 3667777777777766666
Q ss_pred cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246 (357)
Q Consensus 203 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (357)
..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666677777777777776666666666666777777666653
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=182.56 Aligned_cols=225 Identities=19% Similarity=0.137 Sum_probs=177.1
Q ss_pred ceEEEEEecCCCCcCcccc----ccCCCcccEEEecCCCcceecCccc--ccccccceEEEccCCcCceeCh----hhhc
Q psy15002 90 LIIFYLKLRHNNLPKLTGF----IFFGLDIRHLTIHNSSLAVVEESSL--SSIGKKLKRLNLGGNELTRVPQ----TSLS 159 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~----~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~~L~~L~ls~n~l~~~~~----~~~~ 159 (357)
..++.+.+.+..++.-... .....+|++|++++|.+....+..+ ..+ ++|++|++++|.++...+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhh
Confidence 4567888888877532111 1122369999999999998877776 555 679999999999986322 3456
Q ss_pred CCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCee---eCc-cccCCCCcCceeecccccCcccCcc---cCCC
Q psy15002 160 KLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAV---VPS-PALKSLNHLLILNLNHNKISALHSN---AFQG 231 (357)
Q Consensus 160 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~ 231 (357)
.+++|++|++++|.++.+++..+ ..++|++|++++|++.. ++. ..+..+++|++|++++|+++.++.. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 79999999999999998886655 45999999999999764 332 2346789999999999999765332 3467
Q ss_pred CCCCCEEEccCCcCcccCCCcccccc--ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC
Q psy15002 232 LDTLEILTIFENKLSLIEPDSFKGLE--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309 (357)
Q Consensus 232 l~~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 309 (357)
+++|++|++++|+++...+..+..+. ++|+.|++++|+++.++.. +. ++|++|++++|++++++. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLSSNRLNRAPQ--PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence 79999999999999998665555542 6999999999999988754 33 799999999999999854 56789999
Q ss_pred EeecCCCcCcc
Q psy15002 310 SLVLAHNQLRT 320 (357)
Q Consensus 310 ~L~L~~n~l~~ 320 (357)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=1.2e-22 Score=193.35 Aligned_cols=177 Identities=23% Similarity=0.349 Sum_probs=81.8
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+++.|++++|.++.++...+ ++|++|++++|.++.++ ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 45555555555555443221 34555555555555544 234555555555555555544 221 55555555
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
+|.++.++. .+++|+.|++++|.++.++. .+++|+.|++++|+++.++. +. ++|+.|++++|.++.+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLLESL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSSC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCCCch
Confidence 555555443 34455555555555544422 23455555555555544332 22 3455555555555544
Q ss_pred CcccccCCCCC-------cEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 274 PQTSLSKLENL-------RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 274 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
+. +.. +| +.|++++|.++.+|...+ .+++|+.|++++|+++
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCC
T ss_pred hh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCC
Confidence 43 221 33 444444444444443222 2444444444444444
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=1.6e-22 Score=183.56 Aligned_cols=174 Identities=27% Similarity=0.383 Sum_probs=85.0
Q ss_pred eEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC--CCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF--EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 141 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
+.++++++.++.++... .+.+++|++++|.++.++...+ .+++|++|++++|+++.+++..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34555555555554321 1235555555555555554444 235555555555555555544455555555555555
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 298 (357)
|++..+++..|.++++|+.|+|++|+++.+.+.. +..+++|+.|++++|.++.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------------------------~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------------------------FEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------------------------TTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-------------------------hCCcccCCEEECCCCcCCeeC
Confidence 5555444444444455555555555554444444 444445555555555555444
Q ss_pred cCcC---CCCCCCCEeecCCCcCcccCcccCCCCCC--CcEEeCCCCcc
Q psy15002 299 EGDF---EGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHI 342 (357)
Q Consensus 299 ~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~N~l 342 (357)
...| ..+++|+.|+|++|+|+.++...+..++. ++.|+|++|+|
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 4433 23455555555555555555444444443 24455555554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=4.5e-22 Score=175.10 Aligned_cols=192 Identities=28% Similarity=0.345 Sum_probs=147.2
Q ss_pred EEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC
Q psy15002 117 HLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS 196 (357)
Q Consensus 117 ~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 196 (357)
.+.+..+.+..+.. +..+ ++|++|++++|.+..++. +..+++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHH-HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccccc--hhhc-CcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 33444555544322 1233 568999999998888853 7888999999999999888877 6666888899999888
Q ss_pred CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcc
Q psy15002 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276 (357)
Q Consensus 197 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 276 (357)
++.++. +..+++|++|++++|++..+ ..+..+++|+.|++++|+++.+ ..+..+ ++|+.|++++|.++.+++
T Consensus 102 l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 102 VKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG-
T ss_pred CCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCccccchh-
Confidence 887653 77888888888888888876 3467788888888888888876 456666 788888888888888765
Q ss_pred cccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325 (357)
Q Consensus 277 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 325 (357)
+..+++|++|++++|.++.++. +..+++|+.|++++|+++..+...
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred -hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCcccc
Confidence 7788888888888888888753 677888888888888887766543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.1e-23 Score=191.36 Aligned_cols=231 Identities=21% Similarity=0.259 Sum_probs=178.6
Q ss_pred EEEecCCCcceecCcccccccccceEEEccCCcCceeCh----hhhcCCC-CCcEEeccCCccccccCCCC-CC-----C
Q psy15002 117 HLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQ----TSLSKLE-NLRKLELLHNRIALIEEGDF-EG-----K 185 (357)
Q Consensus 117 ~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~-~~-----~ 185 (357)
...++.|.++...+..+.. .++|++|++++|.++..+. ..+.+++ +|++|++++|.++......+ .. +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3567788887765554443 3669999999999999987 7788898 99999999999986543322 22 7
Q ss_pred CCCeEECCCCCCeeeCccc----cCCC-CcCceeecccccCcccCcccC----CC-CCCCCEEEccCCcCcccCCCcc--
Q psy15002 186 ALTQLDLSQNSLAVVPSPA----LKSL-NHLLILNLNHNKISALHSNAF----QG-LDTLEILTIFENKLSLIEPDSF-- 253 (357)
Q Consensus 186 ~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~~~-- 253 (357)
+|++|++++|.++...... +..+ ++|++|++++|.++......+ .. .++|++|++++|+++......+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8999999999998877653 4444 799999999999988766543 34 3699999999999986544333
Q ss_pred --ccccccccEEEccCCcCcccCccc----ccCC-CCCcEEEccCCcCceeCcC----cCCC-CCCCCEeecCCCcCccc
Q psy15002 254 --KGLEKKLKRLNLGGNELTRVPQTS----LSKL-ENLRKLELLHNRIALIEEG----DFEG-LHNLDSLVLAHNQLRTI 321 (357)
Q Consensus 254 --~~~~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~----~~~~-~~~L~~L~L~~n~l~~~ 321 (357)
...+++|+.|++++|.++...+.. +..+ ++|++|++++|.++..... .+.. .++|+.|++++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 333248999999999998877543 3445 5999999999999984332 2323 46999999999999987
Q ss_pred Cc----ccCCCCCCCcEEeCCCCcccccCcc
Q psy15002 322 PP----RVFAHLPLLNSLELDGNHIHTVDPA 348 (357)
Q Consensus 322 ~~----~~~~~~~~L~~L~L~~N~l~~~~~~ 348 (357)
+. ..+..+++|+.|++++|.+.++.++
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 65 3457789999999999997777655
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=164.14 Aligned_cols=129 Identities=22% Similarity=0.425 Sum_probs=60.3
Q ss_pred cEEEecCCCcceecC-cccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECC
Q psy15002 116 RHLTIHNSSLAVVEE-SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLS 193 (357)
Q Consensus 116 ~~L~l~~~~l~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~ 193 (357)
++|++++|.++.+.+ ..|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|+++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 444444444444422 223333 3455555555555555555555555555555555555544443322 2444444444
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcC
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 245 (357)
+|+++.+++..|..+++|++|++++|+++.+.+..|..+++|+.|++++|.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 4444444444444444444444444444444444444444444444444443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.8e-24 Score=196.12 Aligned_cols=231 Identities=20% Similarity=0.234 Sum_probs=131.6
Q ss_pred cccEEEecCCCcceecCcc----cccccccceEEEccCCcCceeC---hhh-------hcCCCCCcEEeccCCcccc---
Q psy15002 114 DIRHLTIHNSSLAVVEESS----LSSIGKKLKRLNLGGNELTRVP---QTS-------LSKLENLRKLELLHNRIAL--- 176 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~----~~~l~~~L~~L~ls~n~l~~~~---~~~-------~~~l~~L~~L~l~~n~l~~--- 176 (357)
+|++|++++|.++...... +..+ ++|++|++++|.+..+. +.. +..+++|++|++++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4555555555444432221 2222 45666666665433221 111 2556666666666666654
Q ss_pred --ccCCCCCCCCCCeEECCCCCCeeeCccccC----CC---------CcCceeecccccCcccC-c---ccCCCCCCCCE
Q psy15002 177 --IEEGDFEGKALTQLDLSQNSLAVVPSPALK----SL---------NHLLILNLNHNKISALH-S---NAFQGLDTLEI 237 (357)
Q Consensus 177 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~~~-~---~~l~~l~~L~~ 237 (357)
++..+...++|++|++++|.++......+. .+ ++|++|++++|+++... + ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 444444456666666666666543322222 22 67777777777765221 1 23445667777
Q ss_pred EEccCCcCcc-----cCCCccccccccccEEEccCCcCc----ccCcccccCCCCCcEEEccCCcCceeC----cCcC--
Q psy15002 238 LTIFENKLSL-----IEPDSFKGLEKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRIALIE----EGDF-- 302 (357)
Q Consensus 238 L~L~~n~l~~-----~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~-- 302 (357)
|++++|+++. +.+..+..+ ++|+.|++++|.++ ...+..+..+++|++|++++|.++... +..+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 7777777662 222244454 67777777777774 212234666777777777777776642 1233
Q ss_pred CCCCCCCEeecCCCcCcc-----cCcccCCCCCCCcEEeCCCCcccccC
Q psy15002 303 EGLHNLDSLVLAHNQLRT-----IPPRVFAHLPLLNSLELDGNHIHTVD 346 (357)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~L~L~~N~l~~~~ 346 (357)
..+++|+.|+|++|.++. ++...+.++++|+.|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 236777778888777776 55544455677778888888777665
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=3.8e-21 Score=162.11 Aligned_cols=150 Identities=29% Similarity=0.479 Sum_probs=81.0
Q ss_pred EEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcC
Q psy15002 166 KLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245 (357)
Q Consensus 166 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 245 (357)
.++++++.++.+|..+. +++++|++++|+++.+++..|..+++|+.|++++|+++.+.+..|.++++|+.|++++|++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44444445554444332 3455555555555555554555555555555555555555555555555555555555555
Q ss_pred cccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcC
Q psy15002 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318 (357)
Q Consensus 246 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 318 (357)
+.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+
T Consensus 93 ~~l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGL-FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCC-CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55544444444 4555555555555555555555555555555555555555555555555555555555554
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=5.5e-24 Score=199.56 Aligned_cols=256 Identities=20% Similarity=0.175 Sum_probs=184.2
Q ss_pred ceEEEEEecCCCCcCc-----cccccCCCcccEEEecCCCcceecCcccccccc----cceEEEccCCcCceeC----hh
Q psy15002 90 LIIFYLKLRHNNLPKL-----TGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK----KLKRLNLGGNELTRVP----QT 156 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~----~L~~L~ls~n~l~~~~----~~ 156 (357)
..+++|++++|.++.. +.......+|++|++++|.+.......+..... +|++|++++|.++... +.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 4577999999998743 443344458999999999887654433332212 6999999999988533 56
Q ss_pred hhcCCCCCcEEeccCCccccc-----cCCCCC-CCCCCeEECCCCCCeeeC----ccccCCCCcCceeecccccCcccCc
Q psy15002 157 SLSKLENLRKLELLHNRIALI-----EEGDFE-GKALTQLDLSQNSLAVVP----SPALKSLNHLLILNLNHNKISALHS 226 (357)
Q Consensus 157 ~~~~l~~L~~L~l~~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~ 226 (357)
.+.++++|++|++++|.++.. ...+.. .++|++|++++|+++... +..+..+++|++|++++|.+.....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 678899999999999998632 222222 367999999999888644 3345667899999999998876544
Q ss_pred ccCC-----CCCCCCEEEccCCcCcccC----CCccccccccccEEEccCCcCcccC-----cccccCCCCCcEEEccCC
Q psy15002 227 NAFQ-----GLDTLEILTIFENKLSLIE----PDSFKGLEKKLKRLNLGGNELTRVP-----QTSLSKLENLRKLELLHN 292 (357)
Q Consensus 227 ~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n 292 (357)
..+. ..++|+.|++++|.++... +..+... ++|+.|++++|.++... +..+..+++|++|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 3332 3568999999999887642 3344445 78999999999887643 223346789999999999
Q ss_pred cCceeC----cCcCCCCCCCCEeecCCCcCcccCc-----ccCCCCCCCcEEeCCCCcccccC
Q psy15002 293 RIALIE----EGDFEGLHNLDSLVLAHNQLRTIPP-----RVFAHLPLLNSLELDGNHIHTVD 346 (357)
Q Consensus 293 ~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~-----~~~~~~~~L~~L~L~~N~l~~~~ 346 (357)
.++... +..+..+++|+.|++++|.+++... ......++|+.|++++|.+++..
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 988742 2345568899999999999875433 22234468999999999988764
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.8e-23 Score=196.06 Aligned_cols=260 Identities=21% Similarity=0.201 Sum_probs=191.3
Q ss_pred ceEEEEEecCCCCcCcccc-ccCCC-----cccEEEecCCCcceec----CcccccccccceEEEccCCcCceeChhhhc
Q psy15002 90 LIIFYLKLRHNNLPKLTGF-IFFGL-----DIRHLTIHNSSLAVVE----ESSLSSIGKKLKRLNLGGNELTRVPQTSLS 159 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~-~~~~~-----~L~~L~l~~~~l~~~~----~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~ 159 (357)
..+++|++++|.+...... .+... +|++|++++|.++... +..+..+ ++|++|++++|.++......+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC-CceeEEECCCCcCchHHHHHHH
Confidence 5688999999999764332 22211 5999999999988533 4555666 5799999999998865444332
Q ss_pred -----CCCCCcEEeccCCccccc-----cCCCCCCCCCCeEECCCCCCeeeCccccC-----CCCcCceeecccccCccc
Q psy15002 160 -----KLENLRKLELLHNRIALI-----EEGDFEGKALTQLDLSQNSLAVVPSPALK-----SLNHLLILNLNHNKISAL 224 (357)
Q Consensus 160 -----~l~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~ 224 (357)
..++|++|++++|.++.. +..+...++|++|++++|.+.......+. ..++|++|++++|.++..
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 356899999999998753 33333458999999999998765443332 356999999999998864
Q ss_pred C----cccCCCCCCCCEEEccCCcCcccCCCc-----cccccccccEEEccCCcCcccC----cccccCCCCCcEEEccC
Q psy15002 225 H----SNAFQGLDTLEILTIFENKLSLIEPDS-----FKGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLH 291 (357)
Q Consensus 225 ~----~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~ 291 (357)
. +..+..+++|+.|++++|+++...... +... ++|+.|++++|.++... +..+..+++|++|++++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 2 445667899999999999987643221 1223 78999999999998742 23466689999999999
Q ss_pred CcCceeCcCcC-----CCCCCCCEeecCCCcCcccC----cccCCCCCCCcEEeCCCCcccccCccccc
Q psy15002 292 NRIALIEEGDF-----EGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHTVDPAAFS 351 (357)
Q Consensus 292 n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~N~l~~~~~~~~~ 351 (357)
|.++......+ ...++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+..+.
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 99876543322 23479999999999998653 23346679999999999999887665443
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.2e-23 Score=185.56 Aligned_cols=252 Identities=18% Similarity=0.142 Sum_probs=155.8
Q ss_pred EEEEEecCCCCcCccccccCC--CcccEEEecCCCcceecCcccccccccceEEEccCCcCcee-ChhhhcCCCCCcEEe
Q psy15002 92 IFYLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV-PQTSLSKLENLRKLE 168 (357)
Q Consensus 92 l~~L~l~~~~i~~l~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~ 168 (357)
.+.++++++.+. +...... .+++.+++.+|.+....+..+ .+ ++|++|++++|.++.. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-cC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456777776665 2221122 366777777777766655433 23 5677888877776643 334567777788888
Q ss_pred ccCCccc-cccCCCCCCCCCCeEECCCC-CCeee-CccccCCCCcCceeecccc-cCccc-CcccCCCCC-CCCEEEccC
Q psy15002 169 LLHNRIA-LIEEGDFEGKALTQLDLSQN-SLAVV-PSPALKSLNHLLILNLNHN-KISAL-HSNAFQGLD-TLEILTIFE 242 (357)
Q Consensus 169 l~~n~l~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~L~~ 242 (357)
+++|.++ ..+..+...++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8777776 34444445577888888877 56542 2234566777888888887 76643 234456667 788888888
Q ss_pred Cc--Ccc-cCCCccccccccccEEEccCCc-CcccCcccccCCCCCcEEEccCCc-CceeCcCcCCCCCCCCEeecCCCc
Q psy15002 243 NK--LSL-IEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQ 317 (357)
Q Consensus 243 n~--l~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 317 (357)
|. ++. ..+..+..+ ++|+.|++++|. ++......+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 73 331 112334444 678888888887 554444456777888888888874 32222224566788888888877
Q ss_pred CcccCcccCCCC-CCCcEEeCCCCcccccCcccccC
Q psy15002 318 LRTIPPRVFAHL-PLLNSLELDGNHIHTVDPAAFSG 352 (357)
Q Consensus 318 l~~~~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~ 352 (357)
++...+..+ ..+..|++++|.++++.+..++.
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred ---cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 333222222 23556667888888877776654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=7.4e-21 Score=181.11 Aligned_cols=184 Identities=21% Similarity=0.309 Sum_probs=136.7
Q ss_pred eEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002 91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 170 (357)
Q Consensus 91 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 170 (357)
.++.|++++|.++.+|...+ .+|++|++++|.++.++ . ..++|++|++++|.++.++. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 56788888888888887664 46888888888888766 2 22568888888888888765 444 78888888
Q ss_pred CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002 171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250 (357)
Q Consensus 171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 250 (357)
+|.++.+|. ..++|++|++++|.++.++. .+++|++|++++|.++.++. +. ++|+.|++++|+++.++.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 888888777 45788888888888887765 46788888888888887654 54 788888888888887654
Q ss_pred Cccccccccc-------cEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcC
Q psy15002 251 DSFKGLEKKL-------KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 302 (357)
Q Consensus 251 ~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 302 (357)
+.. +| +.|++++|.++.+|.. +..+++|+.|++++|.+++..+..+
T Consensus 198 --~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 --VPV---RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp --CC-----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred --HHH---hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 332 56 8888888888887754 4458888888888888877555444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=7.9e-21 Score=167.14 Aligned_cols=172 Identities=30% Similarity=0.416 Sum_probs=139.8
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+++.|++++|.+..++. +..+ ++|++|++++|.++.+++ +.++++|++|++++|.++.++. +..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 78889999888887743 4444 679999999999888876 8888999999999998888765 5666889999999
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
+|+++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|+++.+.+ +..+ ++|+.|++++|.++.+
T Consensus 121 ~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l-~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 121 HNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL 193 (291)
T ss_dssp TSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCBC
T ss_pred CCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC-CccCEEECCCCcCCCC
Confidence 99888874 577888899999999988877 457788899999999998888755 6666 7899999999988887
Q ss_pred CcccccCCCCCcEEEccCCcCceeCcC
Q psy15002 274 PQTSLSKLENLRKLELLHNRIALIEEG 300 (357)
Q Consensus 274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~ 300 (357)
+ .+..+++|+.|++++|.++..+..
T Consensus 194 ~--~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 194 R--ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp G--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred h--hhccCCCCCEEECcCCcccCCccc
Confidence 5 377888999999999888776543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=5.8e-21 Score=183.64 Aligned_cols=196 Identities=27% Similarity=0.332 Sum_probs=148.8
Q ss_pred ccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCC
Q psy15002 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQ 194 (357)
Q Consensus 115 L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 194 (357)
+..+.+..+.+..+.. +..+ ++|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3444455555554432 2233 56888888888888876 37888889999998888888776 55668888888888
Q ss_pred CCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccC
Q psy15002 195 NSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274 (357)
Q Consensus 195 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 274 (357)
|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|+++.+ ..+..+ ++|+.|++++|.++.++
T Consensus 97 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCG
T ss_pred CCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCch
Confidence 8888765 577888888888888888876 3477788888888888888876 456666 78888888888888776
Q ss_pred cccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCC
Q psy15002 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327 (357)
Q Consensus 275 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (357)
+ +..+++|+.|+|++|.++.++ .+..+++|+.|+|++|++...|...+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccc
Confidence 5 778888888888888888874 467788888888888888876654433
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=158.57 Aligned_cols=153 Identities=29% Similarity=0.437 Sum_probs=129.3
Q ss_pred CcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccC
Q psy15002 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE 242 (357)
Q Consensus 164 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 242 (357)
-+.+++++|.++.+|..+. ..+++|++++|+++.+++ ..|..+++|+.|++++|+++.+++..|.++++|+.|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999887664 456899999999988854 5678888999999999999888888888888999999999
Q ss_pred CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 243 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
|+++.+.+..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|+++.+++..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99888877778777 78888888888888887777888888888888888888888778888888888888888876
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.6e-21 Score=173.43 Aligned_cols=234 Identities=20% Similarity=0.230 Sum_probs=172.3
Q ss_pred CcccEEEecCCCcc--eecCcccccccccceEEEccCCcCceeChhhhcC--------CCCCcEEeccCCccccccCCCC
Q psy15002 113 LDIRHLTIHNSSLA--VVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSK--------LENLRKLELLHNRIALIEEGDF 182 (357)
Q Consensus 113 ~~L~~L~l~~~~l~--~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~ 182 (357)
.+|+.|++++|.+. ......+. .++.+.+..+ .++..+|.+ +++|+.|++.+ .++.|++++|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred ccCeEEecCcceeEEecCcccccc----cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 36888888888877 33333322 1344444444 566777877 88888888888 8888888888
Q ss_pred CC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccc----cCcccCcccCCCCCCCC-EEEccCCc------------
Q psy15002 183 EG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN----KISALHSNAFQGLDTLE-ILTIFENK------------ 244 (357)
Q Consensus 183 ~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~l~~l~~L~-~L~L~~n~------------ 244 (357)
.. ++|+.+++.+|.+..+++.+|..+.++..+....+ ....+...+|..+..|+ .+.+....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 76 88888888888888888888888777776666552 22333344444444444 33332211
Q ss_pred ------------CcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC-Ee
Q psy15002 245 ------------LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD-SL 311 (357)
Q Consensus 245 ------------l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L 311 (357)
+.......+....++|+.+++++|.++.++..+|..+.+|+++++.+| ++.++..+|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 111101111111278999999999999999999999999999999988 9999999999999999 99
Q ss_pred ecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
++.+ .++.+++.+|.+|++|+.+++++|.++.+++.+|.++++|
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 9988 8999999999999999999999999999999999998765
No 106
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.85 E-value=1.6e-19 Score=165.50 Aligned_cols=244 Identities=16% Similarity=0.303 Sum_probs=217.8
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 169 (357)
..++.+.+..+ ++.++..+|.+.+|+.+.+.+ .++.+...+|.++ .+|+.+++++|.++.++..+|. ..+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c-~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYC-YNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTC-TTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCc-ccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 45788888766 999999999999999999987 7999999999988 6799999999999999999998 589999999
Q ss_pred cCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc--
Q psy15002 170 LHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS-- 246 (357)
Q Consensus 170 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-- 246 (357)
.. .++.++..+|.. ++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+..+...+|.++++|+.+.+.++.+.
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 84 499999999987 79999999974 88999999998 78999999 45688999999999999999999998765
Q ss_pred ---ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002 247 ---LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323 (357)
Q Consensus 247 ---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 323 (357)
.+...+|.++ ++|+.+++. +.++.+...+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+..++.
T Consensus 287 ~~~~I~~~aF~~c-~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 287 PEAMIHPYCLEGC-PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TTCEECTTTTTTC-TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred cccEECHHHhhCC-ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 6888899988 899999999 4599999999999999999999655 999999999999 99999999999999999
Q ss_pred ccCCCCC-CCcEEeCCCCccccc
Q psy15002 324 RVFAHLP-LLNSLELDGNHIHTV 345 (357)
Q Consensus 324 ~~~~~~~-~L~~L~L~~N~l~~~ 345 (357)
..|.+++ .+..+.+..+.+...
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGHHHH
T ss_pred ccccCCCCCccEEEeCHHHHHHh
Confidence 8888885 789999988865543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.5e-20 Score=157.19 Aligned_cols=155 Identities=26% Similarity=0.350 Sum_probs=125.8
Q ss_pred CCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEcc
Q psy15002 162 ENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241 (357)
Q Consensus 162 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 241 (357)
..-+.++.+++.++.+|..+. ++|++|++++|.++.+.+..|..+++|++|++++|++..+++..|..+++|+.|+++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 346678888888888887665 778888888888888877788888888888888888888877778888888888888
Q ss_pred CCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320 (357)
Q Consensus 242 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 320 (357)
+|+++.+++..|..+ ++|+.|++++|.++.++. .+..+++|++|++++|+++.+++..+..+++|+.|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRL-VHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTC-TTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcc-hhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888888877777777 788888888888887764 46777888888888888888877777778888888888887764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=5.7e-20 Score=155.93 Aligned_cols=153 Identities=28% Similarity=0.385 Sum_probs=128.2
Q ss_pred ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218 (357)
Q Consensus 140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 218 (357)
-+.++.+++.++.++... .++|++|++++|.++.+++..+ .+++|++|++++|+++.+++..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 567888898888888642 3789999999999988866554 448899999999999888888888899999999999
Q ss_pred ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
|+++.+++..|..+++|+.|++++|+++.+ +..+..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999988888888889999999999999877 4455666 7899999999999988887788889999999999987654
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=7.6e-22 Score=177.32 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=181.5
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEecCCCccee-cCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVV-EESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..++.|++++|.+...+...+...+|++|++++|.+... .+..+..+ ++|++|++++|.++...+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 567899999999998888877777999999999988754 33445555 6799999999999877777889999999999
Q ss_pred ccCC-cccc--ccCCCCCCCCCCeEECCCC-CCeee-CccccCCCC-cCceeeccccc--Cc-ccCcccCCCCCCCCEEE
Q psy15002 169 LLHN-RIAL--IEEGDFEGKALTQLDLSQN-SLAVV-PSPALKSLN-HLLILNLNHNK--IS-ALHSNAFQGLDTLEILT 239 (357)
Q Consensus 169 l~~n-~l~~--~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~ 239 (357)
+++| .++. ++..+...++|++|++++| .++.. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 6773 5555556699999999999 88764 234567788 99999999994 43 22244566789999999
Q ss_pred ccCCc-CcccCCCccccccccccEEEccCCc-CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCC-CCCCEeecCCC
Q psy15002 240 IFENK-LSLIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL-HNLDSLVLAHN 316 (357)
Q Consensus 240 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n 316 (357)
+++|. ++...+..+..+ ++|+.|++++|. +.......+..+++|+.|++++| ++...+..+ .++..|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp CTTCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCC
T ss_pred CCCCCcCCHHHHHHHhCC-CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecc
Confidence 99999 666656677777 899999999995 33322235778999999999999 443334333 34788889999
Q ss_pred cCcccCcccCC
Q psy15002 317 QLRTIPPRVFA 327 (357)
Q Consensus 317 ~l~~~~~~~~~ 327 (357)
++++..+..+.
T Consensus 304 ~l~~~~~~~~~ 314 (336)
T 2ast_B 304 HFTTIARPTIG 314 (336)
T ss_dssp CSCCTTCSSCS
T ss_pred cCccccCCccc
Confidence 99987775544
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=8.6e-21 Score=182.48 Aligned_cols=194 Identities=27% Similarity=0.348 Sum_probs=154.7
Q ss_pred EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173 (357)
Q Consensus 94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (357)
.+.+..+.+..+... -...+|+.|++++|.+..++ .+..+ ++|+.|++++|.+..+++ +..+++|++|+|++|.
T Consensus 25 ~l~l~~~~i~~~~~~-~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEECH-HHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccch-hcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 344555666654432 12227888999999888875 35555 679999999999998876 8899999999999999
Q ss_pred cccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253 (357)
Q Consensus 174 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (357)
++.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|+++.+.+ +
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCCh-hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 98876 5666789999999999998874 478889999999999999887 467888999999999999988765 6
Q ss_pred ccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303 (357)
Q Consensus 254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 303 (357)
..+ ++|+.|++++|.++.++ .+..+++|+.|++++|.+...+...+.
T Consensus 172 ~~l-~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 172 AGL-TKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp TTC-TTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred ccC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccc
Confidence 666 78999999999998874 478889999999999998887654443
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=3.1e-20 Score=166.38 Aligned_cols=237 Identities=15% Similarity=0.149 Sum_probs=181.2
Q ss_pred ceEEEEEecCCCCc--CccccccCCCcccEEEecCCCcceecCccccc--------ccccceEEEccCCcCceeChhhhc
Q psy15002 90 LIIFYLKLRHNNLP--KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSS--------IGKKLKRLNLGGNELTRVPQTSLS 159 (357)
Q Consensus 90 ~~l~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~~L~~L~ls~n~l~~~~~~~~~ 159 (357)
..++.|+|++|.+. ..+...+.. ++.+.+..+ .++..+|.+ + ++|+.|++.+ .++.|+..+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~---~I~~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMAN---FVPAYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTT---EECTTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCccccccc--ccccccccc---ccCHHHhccccccccccc-CCCcEEECCc-cccchhHHHhh
Confidence 56889999999998 333333332 344444444 667777777 6 6799999999 89999999999
Q ss_pred CCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCC----CCeeeCccccCCCCcCc-eeec-----------------
Q psy15002 160 KLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN----SLAVVPSPALKSLNHLL-ILNL----------------- 216 (357)
Q Consensus 160 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n----~l~~~~~~~~~~l~~L~-~L~l----------------- 216 (357)
++++|+.|++++|.++.+++.+|.. .++..+....+ ....+...+|..+..|+ .+.+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 9999999999999999999988876 45555555442 12233344454444444 2222
Q ss_pred --------ccccCcccCcccC-CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCc-E
Q psy15002 217 --------NHNKISALHSNAF-QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR-K 286 (357)
Q Consensus 217 --------~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~ 286 (357)
.++ +.......+ ..+++|+.+++++|+++.++..+|.++ .+|+.+++.+| ++.++..+|.++++|+ .
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 221 111000111 126899999999999999999999998 89999999998 9999999999999999 9
Q ss_pred EEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeC
Q psy15002 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337 (357)
Q Consensus 287 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (357)
+++.+ .++.++..+|.++++|+.+++++|+++.++..+|.++++|+.+..
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 899999999999999999999999999999999999999998864
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=4.6e-21 Score=166.12 Aligned_cols=173 Identities=25% Similarity=0.314 Sum_probs=148.7
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
.+++.++++++.++.++ .+..+++|++|++++|.++.++ .+...++|++|++++|+++.+++ +..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 45888899999999887 4788999999999999999887 56666999999999999999886 8899999999999
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 297 (357)
+|+++.++. +.. ++|+.|++++|+++.++ .+..+ ++|+.|++++|.+++++ .+..+++|++|++++|.++++
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l-~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHL-KNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTC-TTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCc-ccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 999988754 333 89999999999998863 46666 79999999999999885 478889999999999999988
Q ss_pred CcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002 298 EEGDFEGLHNLDSLVLAHNQLRTIPPRV 325 (357)
Q Consensus 298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 325 (357)
..+..+++|+.|++++|++...+...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred --HHhccCCCCCEEeCCCCcccCCcccc
Confidence 46788999999999999998876543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=3e-20 Score=160.92 Aligned_cols=171 Identities=24% Similarity=0.304 Sum_probs=148.5
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+++.+.++++.++.+. .+..+ ++|++|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 5677788888888776 34555 67999999999999987 48999999999999999999988 6667999999999
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 273 (357)
+|+++.++.. .. ++|+.|++++|+++.++ .+..+++|+.|++++|++++++ .+..+ ++|+.|++++|.++++
T Consensus 94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l-~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFL-SKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGC-TTCCEEECTTSCCCBC
T ss_pred CCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccC-CCCCEEECCCCcCcch
Confidence 9999998753 33 89999999999999873 5889999999999999999874 56677 8999999999999998
Q ss_pred CcccccCCCCCcEEEccCCcCceeCcC
Q psy15002 274 PQTSLSKLENLRKLELLHNRIALIEEG 300 (357)
Q Consensus 274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~ 300 (357)
..+..+++|+.|++++|.++..+..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred --HHhccCCCCCEEeCCCCcccCCccc
Confidence 4588999999999999999887653
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.6e-21 Score=178.76 Aligned_cols=244 Identities=18% Similarity=0.130 Sum_probs=180.4
Q ss_pred ChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccc----c-CCCcccEEEecCCCcceecCc---cc-------cccc
Q psy15002 73 DNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI----F-FGLDIRHLTIHNSSLAVVEES---SL-------SSIG 137 (357)
Q Consensus 73 ~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~----~-~~~~L~~L~l~~~~l~~~~~~---~~-------~~l~ 137 (357)
++..+...+... ..+++|++++|.+....... + ...+|++|++++|.+..+... .+ ..+
T Consensus 20 ~~~~l~~~l~~~-----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~- 93 (386)
T 2ca6_A 20 DEKSVFAVLLED-----DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC- 93 (386)
T ss_dssp HHHTTSHHHHHC-----SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcC-----CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-
Confidence 344444444332 45889999999998654322 3 344899999999866544321 22 333
Q ss_pred ccceEEEccCCcCce----eChhhhcCCCCCcEEeccCCcccccc-----CCCCCC---------CCCCeEECCCCCCee
Q psy15002 138 KKLKRLNLGGNELTR----VPQTSLSKLENLRKLELLHNRIALIE-----EGDFEG---------KALTQLDLSQNSLAV 199 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~---------~~L~~L~l~~n~l~~ 199 (357)
++|++|++++|.++. ..+..+.++++|++|++++|.++... ..+... ++|++|++++|+++.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 679999999999987 23446789999999999999987332 222222 799999999999973
Q ss_pred eCc----cccCCCCcCceeecccccCcc-----cCcccCCCCCCCCEEEccCCcCc----ccCCCccccccccccEEEcc
Q psy15002 200 VPS----PALKSLNHLLILNLNHNKISA-----LHSNAFQGLDTLEILTIFENKLS----LIEPDSFKGLEKKLKRLNLG 266 (357)
Q Consensus 200 ~~~----~~~~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L~l~ 266 (357)
... ..+..+++|++|++++|+++. +.+..+..+++|+.|++++|.++ ...+..+..+ ++|+.|+++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~L~ 252 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLN 252 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTCCEEECT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-CCcCEEECC
Confidence 322 356678899999999999873 33336778899999999999995 2224456666 799999999
Q ss_pred CCcCcccC----cccc--cCCCCCcEEEccCCcCce-----eCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002 267 GNELTRVP----QTSL--SKLENLRKLELLHNRIAL-----IEEGDFEGLHNLDSLVLAHNQLRTIPP 323 (357)
Q Consensus 267 ~n~l~~~~----~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~ 323 (357)
+|.++... +..+ ..+++|++|++++|.++. ++.....++++|+.|++++|++++..+
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99998752 2334 348999999999999998 555333568999999999999997763
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.7e-19 Score=149.42 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEc
Q psy15002 161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTI 240 (357)
Q Consensus 161 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 240 (357)
+++|++|++++|.++.++ .+...++|++|++++|.+..++ .+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 334444444444444333 2222233333333333322221 2334444444444444444433333444444444444
Q ss_pred cCCcCcc
Q psy15002 241 FENKLSL 247 (357)
Q Consensus 241 ~~n~l~~ 247 (357)
++|+++.
T Consensus 120 s~n~i~~ 126 (197)
T 4ezg_A 120 SHSAHDD 126 (197)
T ss_dssp CSSBCBG
T ss_pred cCCccCc
Confidence 4444443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.6e-19 Score=148.24 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=132.8
Q ss_pred CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEE
Q psy15002 184 GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263 (357)
Q Consensus 184 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 263 (357)
+++|++|++++|.+..++ .+..+++|++|++++|.+..+ ..+..+++|++|++++|+++...+..+..+ ++|+.|
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTC-TTCCEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCC-CCCCEE
Confidence 378999999999999877 588899999999999987765 368889999999999999998767788888 899999
Q ss_pred EccCCcCcccCcccccCCCCCcEEEccCCc-CceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcc
Q psy15002 264 NLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342 (357)
Q Consensus 264 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l 342 (357)
++++|.++...+..+..+++|++|++++|. ++.++ .+.++++|+.|++++|++++++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 999999998666778999999999999998 88886 4788999999999999999987 468899999999999998
Q ss_pred cc
Q psy15002 343 HT 344 (357)
Q Consensus 343 ~~ 344 (357)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 65
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=140.35 Aligned_cols=107 Identities=35% Similarity=0.505 Sum_probs=63.7
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
+|++|++++|.++.++ ..|.++++|++|++++|.++.+++..|.. ++|++|++++|+++.+++..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4566666666666555 34566666666666666666555543332 555555555555555555556666666666666
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLS 246 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (357)
+|.++.+++..|..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666665555666666666666666543
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.2e-17 Score=137.52 Aligned_cols=108 Identities=30% Similarity=0.455 Sum_probs=63.9
Q ss_pred ceEEEccCCcCceeChh-hhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 140 LKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 140 L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
+++|++++|.++.+++. .|.++++|++|++++|.++.+++..+ .+++|++|++++|+++.+++..|.++++|++|+++
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 45555555555554432 24555555555555555555533322 23555555555566666655556666777777777
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLSL 247 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (357)
+|+++.+.+..+..+++|+.|++++|.+..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777776666666777777777777776653
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=1.1e-17 Score=135.94 Aligned_cols=109 Identities=29% Similarity=0.450 Sum_probs=71.4
Q ss_pred cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217 (357)
Q Consensus 139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 217 (357)
+|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ ..++|++|++++|+++.+++..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 46666666666666666666666777777777776666665543 33666666666666666665556666777777777
Q ss_pred cccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002 218 HNKISALHSNAFQGLDTLEILTIFENKLSL 247 (357)
Q Consensus 218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (357)
+|.++.+++..+..+++|+.|++++|.+..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777766666556666677777777776553
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=2.5e-17 Score=135.64 Aligned_cols=129 Identities=32% Similarity=0.493 Sum_probs=90.8
Q ss_pred CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc-cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEcc
Q psy15002 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN-AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLG 266 (357)
Q Consensus 188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 266 (357)
+++++++++++.++.... .++++|++++|+++.+++. .+..+++|+.|++++|+++++.+..|..+ ++|+.|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-ccCCEEECC
Confidence 567777777777765322 2677777777777776553 36667777777777777777766667666 677777777
Q ss_pred CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002 267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320 (357)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 320 (357)
+|.++.+++..+..+++|++|++++|+++++.+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777777776667777777777777777777766667777777777777777663
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=4.1e-20 Score=176.69 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=129.2
Q ss_pred CCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC-------------CeeeCccccCCCCcCceee-cccc------
Q psy15002 160 KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS-------------LAVVPSPALKSLNHLLILN-LNHN------ 219 (357)
Q Consensus 160 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n------ 219 (357)
..++|+.|++++|.++.+|..+..+++|+.|++++|. .....+..+..+++|+.|+ ++.|
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 3455555555555555555555555555555554442 2233334555566666666 4444
Q ss_pred -------cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002 220 -------KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292 (357)
Q Consensus 220 -------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 292 (357)
.+..+++ ..|+.|++++|++++++ . +..+ ++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 427 ~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 427 SKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred hhhhhcccccccCc------cCceEEEecCCCCCCCc-C-cccc-ccCcEeecCcccccccch-hhhcCCCCCEEECCCC
Confidence 3333322 25889999999999874 3 7777 789999999999998874 6888999999999999
Q ss_pred cCceeCcCcCCCCCCCCEeecCCCcCcccC-cccCCCCCCCcEEeCCCCcccccCccc
Q psy15002 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA 349 (357)
Q Consensus 293 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~N~l~~~~~~~ 349 (357)
.+++++ .+.++++|+.|+|++|++++++ +..+..+++|+.|+|++|+++++++..
T Consensus 497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 497 ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 999876 6888999999999999999886 666788999999999999999987643
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=134.35 Aligned_cols=127 Identities=27% Similarity=0.427 Sum_probs=89.0
Q ss_pred CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267 (357)
Q Consensus 188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 267 (357)
+++++++++++.++... .+++++|++++|.++.++ ..|..+++|+.|++++|+++.+.+..|..+ ++|+.|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC-CCCCEEECCC
Confidence 56777777777776532 246777777777777664 566677777777777777777766666666 6777777777
Q ss_pred CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
|.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777777666777777777777777777777666666777777777777664
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.1e-18 Score=171.88 Aligned_cols=192 Identities=18% Similarity=0.135 Sum_probs=93.7
Q ss_pred ceEEEEEecCCCCcCccccccCCCcccEEEe-----cCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCC
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTI-----HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENL 164 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l-----~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L 164 (357)
..++.|++.++.+...+...+...+|+.+.+ ..|.+. +.+..+..+ ..|+.|++++|.+..++.. +.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~-~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDD-QLWHALDLSNLQIFNISAN-IFKYDFL 249 (727)
T ss_dssp --------------------------------------------------CC-CCCCEEECTTSCCSCCCGG-GGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccC-CCCcEEECCCCCCCCCChh-hcCCCCC
Confidence 4466777777777776655554443333332 233333 334445555 4577777777777777665 3467777
Q ss_pred cEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCc
Q psy15002 165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244 (357)
Q Consensus 165 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 244 (357)
++|+|++|.++.+|..+..+++|++|+|++|.++.++ ..+..+++|++|+|++|.++.++. .|..+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC-SSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC-hhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCc
Confidence 7777777777777776666677777777777777664 356777777777777777776643 47777777777777777
Q ss_pred CcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292 (357)
Q Consensus 245 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 292 (357)
+++..+..+.........+++++|.++...+ ..|+.|+++.|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 7766555554331223345667777665433 24555555555
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.1e-20 Score=180.60 Aligned_cols=187 Identities=22% Similarity=0.232 Sum_probs=133.6
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-------------c-ccccCCCCCCCCCCeEE-CCCC-------
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-------------I-ALIEEGDFEGKALTQLD-LSQN------- 195 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l-~~~~~~~~~~~~L~~L~-l~~n------- 195 (357)
++|+.|++++|.++.+|. .++++++|+.|++++|. . ...|..+..+++|+.|+ ++.|
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 446666666666665543 36666666666665542 1 11222222224455554 3333
Q ss_pred ------CCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002 196 ------SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269 (357)
Q Consensus 196 ------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 269 (357)
.+..++. ..|+.|++++|.++.++ . +..+++|+.|++++|+++.+ |..+..+ ++|+.|++++|.
T Consensus 428 l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~L~~L~Ls~N~ 497 (567)
T 1dce_A 428 KFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAAL-RCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGC-TTCCEEECCSSC
T ss_pred hhhhcccccccCc------cCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcC-CCCCEEECCCCC
Confidence 3333332 25888999999998874 3 88889999999999999876 5577777 799999999999
Q ss_pred CcccCcccccCCCCCcEEEccCCcCceeC-cCcCCCCCCCCEeecCCCcCcccCccc---CCCCCCCcEEeC
Q psy15002 270 LTRVPQTSLSKLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRV---FAHLPLLNSLEL 337 (357)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~L 337 (357)
+++++ .+..+++|+.|++++|++++++ +..+..+++|+.|+|++|+++++++.. +..+++|+.|++
T Consensus 498 l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99876 5888999999999999999986 678888999999999999999887643 234788888875
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=6.5e-17 Score=131.34 Aligned_cols=128 Identities=27% Similarity=0.422 Sum_probs=61.1
Q ss_pred CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267 (357)
Q Consensus 188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 267 (357)
+.+++++++++.++... .++++.|++++|+++.+++..+..+++|+.|++++|+++.+++..|..+ ++|+.|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC-CccCEEECCC
Confidence 44555555555544321 1345555555555555544444445555555555555554444444443 4445555555
Q ss_pred CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
|.++.+++..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4444444444444444444444444444444444444444444444444443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=2e-17 Score=133.25 Aligned_cols=135 Identities=24% Similarity=0.268 Sum_probs=74.0
Q ss_pred CcCceeecccccCc--ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcE
Q psy15002 209 NHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK 286 (357)
Q Consensus 209 ~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 286 (357)
++|+.|++++|.+. .+ +..+..+++|+.|++++|.++.+ ..+..+ ++|+.|++++|.++...+..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34455555555444 22 22344445555555555555444 333344 45555555555555533333444566666
Q ss_pred EEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCc---ccCCCCCCCcEEeCCCCcccccCc
Q psy15002 287 LELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPP---RVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 287 L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
|++++|.++.++. ..+..+++|+.|++++|+++++++ ..+..+++|+.|++++|.+..++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 6666666666542 455566666666666666666665 345666667777777766666543
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.3e-18 Score=171.26 Aligned_cols=219 Identities=20% Similarity=0.219 Sum_probs=116.8
Q ss_pred cccEEEecCCCcceecCccccccc---ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeE
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIG---KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL 190 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~---~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 190 (357)
.+++|.+.++.+..+....+..+. .++..++++.|.+. +++..+..+++|+.|+|++|.+..++..++.+++|++|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 578888888887765433222110 01223333334443 44667889999999999999999999999988999999
Q ss_pred ECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcC
Q psy15002 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270 (357)
Q Consensus 191 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 270 (357)
+|++|.++.++ ..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.++. .|..+ ++|+.|+|++|.+
T Consensus 253 ~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l-~~L~~L~L~~N~l 328 (727)
T 4b8c_D 253 YLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-EFGNL-CNLQFLGVEGNPL 328 (727)
T ss_dssp BCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-STTSC-TTCCCEECTTSCC
T ss_pred EeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-hhhcC-CCccEEeCCCCcc
Confidence 99999999776 4688899999999999999977 6678889999999999999998744 48777 8999999999999
Q ss_pred cccCcccccCCC-CCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC--------cCcccCcccCCCCCCCcEEeCCCCc
Q psy15002 271 TRVPQTSLSKLE-NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN--------QLRTIPPRVFAHLPLLNSLELDGNH 341 (357)
Q Consensus 271 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~~~~~~~L~~L~L~~N~ 341 (357)
++.++..+..+. .+..+++++|.++...+ ..|+.|++++| .+....+..+..+..+....+++|-
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC-----------------------------------------C
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 987766554322 22346788888876544 45667777776 3444444445566667778888887
Q ss_pred cc
Q psy15002 342 IH 343 (357)
Q Consensus 342 l~ 343 (357)
+.
T Consensus 403 l~ 404 (727)
T 4b8c_D 403 LC 404 (727)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=5.6e-17 Score=130.57 Aligned_cols=116 Identities=24% Similarity=0.286 Sum_probs=64.6
Q ss_pred cCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc-ccccCCCC
Q psy15002 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLEN 283 (357)
Q Consensus 205 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 283 (357)
+..+++|++|++++|.++.+ ..+..+++|+.|++++|+++...+..+..+ ++|+.|++++|.++.++. ..+..+++
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-TTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC-CCCCEEeccCCccCcchhHHHHhcCCC
Confidence 34445555555555555544 344555555555555555555333333334 456666666666655432 34556666
Q ss_pred CcEEEccCCcCceeCc---CcCCCCCCCCEeecCCCcCcccCc
Q psy15002 284 LRKLELLHNRIALIEE---GDFEGLHNLDSLVLAHNQLRTIPP 323 (357)
Q Consensus 284 L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~ 323 (357)
|++|++++|.++.+++ ..+..+++|+.|++++|.+..+|.
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 6666666666666655 455566666666666666665554
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=8.4e-17 Score=130.56 Aligned_cols=131 Identities=21% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCcCceeecccccCcccCcccCCCC-CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcE
Q psy15002 208 LNHLLILNLNHNKISALHSNAFQGL-DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK 286 (357)
Q Consensus 208 l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 286 (357)
+++|+.|++++|++..+ +. +..+ ++|+.|++++|+++++ ..+..+ ++|+.|++++|.++.+++..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34444444444444433 11 2222 2445555555544444 233333 44555555555555444433344555555
Q ss_pred EEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc---cCCCCCCCcEEeCCCCccc
Q psy15002 287 LELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR---VFAHLPLLNSLELDGNHIH 343 (357)
Q Consensus 287 L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~N~l~ 343 (357)
|++++|.++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.||+++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555544443 2344455555555555555555443 3445555556655555443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.7e-16 Score=125.01 Aligned_cols=128 Identities=26% Similarity=0.315 Sum_probs=78.7
Q ss_pred CcCceeecccccCc-ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002 209 NHLLILNLNHNKIS-ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL 287 (357)
Q Consensus 209 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 287 (357)
++++.|++++|.+. ...+..+..+++|+.|++++|.++.+ ..+..+ ++|+.|++++|.+++..+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC-TTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC-CCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666655 22233455566666666666666555 344444 566666666666666434445556677777
Q ss_pred EccCCcCceeC-cCcCCCCCCCCEeecCCCcCcccCc---ccCCCCCCCcEEeCCC
Q psy15002 288 ELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPP---RVFAHLPLLNSLELDG 339 (357)
Q Consensus 288 ~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~ 339 (357)
++++|.+++++ +..+..+++|+.|++++|+++++++ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77777776653 2456667777777777777777665 4556677777777653
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.8e-14 Score=132.05 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=43.0
Q ss_pred cccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 277 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
.+..+.+|+.+.+..+ ++.++..+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3444555555555433 55555555655666666666432 55555555666666666666554 555666666555443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.8e-16 Score=127.45 Aligned_cols=86 Identities=24% Similarity=0.278 Sum_probs=35.9
Q ss_pred cCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCE
Q psy15002 159 SKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEI 237 (357)
Q Consensus 159 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 237 (357)
.++.+|++|++++|.++.++. +... ++|++|++++|.++.+ ..+..+++|++|++++|.++.+++..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 334445555555554444422 2211 2444444444444433 13344444444444444444443333333444444
Q ss_pred EEccCCcCcc
Q psy15002 238 LTIFENKLSL 247 (357)
Q Consensus 238 L~L~~n~l~~ 247 (357)
|++++|+++.
T Consensus 93 L~L~~N~i~~ 102 (176)
T 1a9n_A 93 LILTNNSLVE 102 (176)
T ss_dssp EECCSCCCCC
T ss_pred EECCCCcCCc
Confidence 4444444433
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.2e-17 Score=161.38 Aligned_cols=211 Identities=18% Similarity=0.123 Sum_probs=129.5
Q ss_pred ccceEEEccCCcCceeCh-hhhcCCCCCcEEeccCCccc--cccCCCCCCCCCCeEECCC-----------CCCeeeCcc
Q psy15002 138 KKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIA--LIEEGDFEGKALTQLDLSQ-----------NSLAVVPSP 203 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~ 203 (357)
++|++|++++|.++.... ..+.++++|++|+++ +.++ .++......++|++|++++ +.++.....
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 457777777766544322 224666777777776 3332 1121112236677777772 444432211
Q ss_pred -ccCCCCcCceeecccccCcccCcccCCC-CCCCCEEEcc----CCcCcccCC-----CccccccccccEEEccCCc--C
Q psy15002 204 -ALKSLNHLLILNLNHNKISALHSNAFQG-LDTLEILTIF----ENKLSLIEP-----DSFKGLEKKLKRLNLGGNE--L 270 (357)
Q Consensus 204 -~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~-----~~~~~~~~~L~~L~l~~n~--l 270 (357)
....+++|++|+++.|.++......+.. +++|+.|+++ .|.+++.+. ..+.++ ++|+.|++++|. +
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCc
Confidence 1334678888888777776544444433 6788888886 556655321 113344 688888886543 4
Q ss_pred cccCcccc-cCCCCCcEEEccCCcCceeC-cCcCCCCCCCCEeecCCCcCccc-CcccCCCCCCCcEEeCCCCcccccCc
Q psy15002 271 TRVPQTSL-SKLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLELDGNHIHTVDP 347 (357)
Q Consensus 271 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~N~l~~~~~ 347 (357)
+......+ ..+++|++|++++|.+++.. +..+.++++|+.|++++|.++.. .+.....+++|+.|+|++|++++..-
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 43322222 34788999999999887633 22346789999999999998743 22334568899999999999887644
Q ss_pred ccc
Q psy15002 348 AAF 350 (357)
Q Consensus 348 ~~~ 350 (357)
..+
T Consensus 531 ~~l 533 (592)
T 3ogk_B 531 DLM 533 (592)
T ss_dssp TGG
T ss_pred HHH
Confidence 433
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=5.7e-16 Score=122.02 Aligned_cols=55 Identities=33% Similarity=0.494 Sum_probs=22.9
Q ss_pred cccEEEccCCcCcccC-cccccCCCCCcEEEccCCcCceeCc---CcCCCCCCCCEeec
Q psy15002 259 KLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEE---GDFEGLHNLDSLVL 313 (357)
Q Consensus 259 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L 313 (357)
+|+.|++++|.+++++ +..+..+++|++|++++|.++++++ ..+..+++|+.|++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 3444444444443332 1223444444444444444444433 23334444444444
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1.1e-17 Score=161.57 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=69.5
Q ss_pred ccceEEEccCCcCceeCh----hhhcCCCCCcEEeccCCccc-----cccCCCCCCCCCCeEECCCCCCeeeCccccCCC
Q psy15002 138 KKLKRLNLGGNELTRVPQ----TSLSKLENLRKLELLHNRIA-----LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL 208 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 208 (357)
++|++|++++|.+++... ....++++|++|++++|.++ .++......++|++|++++|.+..++ ..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 456666666665543321 12345556666666666554 12222222356666666666555443 234445
Q ss_pred CcCceeecccccCc---ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc-ccccCCCCC
Q psy15002 209 NHLLILNLNHNKIS---ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENL 284 (357)
Q Consensus 209 ~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 284 (357)
++|+.|+++..... ......+..+++|+.++++++....+ +..+..+ ++|+.|++++|.++.... ..+..+++|
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 55555555432111 01112233444555555554432222 2223333 566666666666543221 123445555
Q ss_pred cEEEcc
Q psy15002 285 RKLELL 290 (357)
Q Consensus 285 ~~L~l~ 290 (357)
++|+++
T Consensus 321 ~~L~L~ 326 (592)
T 3ogk_B 321 EVLETR 326 (592)
T ss_dssp CEEEEE
T ss_pred CEEecc
Confidence 555554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=5.1e-15 Score=119.23 Aligned_cols=85 Identities=28% Similarity=0.427 Sum_probs=50.8
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 216 (357)
++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|. +++|++|++++|+++.+++..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 3466677777777776666666677777777777666666655442 255555555555555555544555555555555
Q ss_pred ccccCc
Q psy15002 217 NHNKIS 222 (357)
Q Consensus 217 ~~n~l~ 222 (357)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=7.1e-15 Score=118.37 Aligned_cols=107 Identities=24% Similarity=0.353 Sum_probs=61.1
Q ss_pred CCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecC
Q psy15002 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314 (357)
Q Consensus 235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 314 (357)
.+.+++++|+++.++... +++++.|++++|.++++++..+..+++|++|++++|+++.+++..|.++++|+.|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345555555555543221 1355556666666665555555556666666666666666655555556666666666
Q ss_pred CCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 315 ~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~ 345 (357)
+|+|+++++..|..+++|+.|+|++|+|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 6666666655555566666666666655543
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.60 E-value=1.4e-13 Score=126.21 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=49.8
Q ss_pred ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeC
Q psy15002 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337 (357)
Q Consensus 258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (357)
..|+.+.+.++ +..+...+|..++.|+.+.+. +.++.++..+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 34555555432 223444445555555555553 3355555555555556666655433 55555555555556666655
Q ss_pred CCCcccccCcccccCcccc
Q psy15002 338 DGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 338 ~~N~l~~~~~~~~~~l~~l 356 (357)
.. .++.|...+|.++.+|
T Consensus 342 p~-sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 342 PS-SVTKIPESAFSNCTAL 359 (394)
T ss_dssp CT-TCCBCCGGGGTTCTTC
T ss_pred Cc-ccCEEhHhHhhCCCCC
Confidence 43 2555555555555443
No 139
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.59 E-value=3.6e-13 Score=122.72 Aligned_cols=251 Identities=17% Similarity=0.254 Sum_probs=170.5
Q ss_pred ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002 90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 168 (357)
Q Consensus 90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 168 (357)
..++.+.+. ..++.|+..+|.+. +|+.+.+.++ ++.+...+|.+. +|+.+.+.. +++.+...+|.+. +|+.+.
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC-CCSEEE
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCc-eeeEeccceeccC-Cccccc
Confidence 456666665 45778888888775 7888888654 788888888775 477777754 3677777777664 688877
Q ss_pred ccCCccccccCCCCCCCCCCeEECCCCCCeeeCccc--------------------------------------------
Q psy15002 169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPA-------------------------------------------- 204 (357)
Q Consensus 169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------------------------- 204 (357)
+..+ ++.+...+|...+++.+.+..+ ++.+....
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 7643 4455555555444444433321 22222222
Q ss_pred ---------------cCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002 205 ---------------LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269 (357)
Q Consensus 205 ---------------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 269 (357)
+....+++.+.+..+ +..+...++.++..|+.+.+..+ ++.+...+|... ..++.+.+.. .
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~-~ 273 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYA-K 273 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECC-C
T ss_pred ccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-ehhccccccc-c
Confidence 233334444444332 44455566667777777777664 667777777766 6788887754 4
Q ss_pred CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCccc
Q psy15002 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 349 (357)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 349 (357)
++.++..+|..+.+|+.+.+.++.++.++..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.|...+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~a 351 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGA 351 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhH
Confidence 67777777888888888888888888888888888888888888654 78888888888888888888654 78888888
Q ss_pred ccCcc
Q psy15002 350 FSGLE 354 (357)
Q Consensus 350 ~~~l~ 354 (357)
|.++.
T Consensus 352 F~~c~ 356 (379)
T 4h09_A 352 FEGSS 356 (379)
T ss_dssp TTTSS
T ss_pred hhCCC
Confidence 87764
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=2.1e-15 Score=121.98 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=73.9
Q ss_pred EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174 (357)
Q Consensus 95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 174 (357)
++++++.++.+|...+ .++++|++++|.++.+.+..|..+ ++|++|++++|.|+.+++..|.++++|++|++++|.+
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 3344444445554433 356677777777777766666666 5688888888888888877778888888888888888
Q ss_pred ccccCCCCC-CCCCCeEECCCCCCeeeC
Q psy15002 175 ALIEEGDFE-GKALTQLDLSQNSLAVVP 201 (357)
Q Consensus 175 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 201 (357)
+.+++..+. +++|++|++++|.+....
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888877444 488888888888776543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.7e-14 Score=116.54 Aligned_cols=104 Identities=25% Similarity=0.452 Sum_probs=50.6
Q ss_pred ceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccC
Q psy15002 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291 (357)
Q Consensus 212 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 291 (357)
+.+++++|+++.++.. +. ++|+.|++++|+++++.+..|..+ ++|+.|++++|+++.+++..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC-cC--CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4455555555544332 11 445555555555555544444444 4455555555555554444444445555555555
Q ss_pred CcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 292 NRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 292 n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
|+++.+++..|..+++|+.|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555544444444455555555555444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=4.4e-17 Score=157.42 Aligned_cols=35 Identities=23% Similarity=0.103 Sum_probs=20.9
Q ss_pred CCCCeEECCCCCCeeeCc-cccCCCCcCceeecccc
Q psy15002 185 KALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHN 219 (357)
Q Consensus 185 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 219 (357)
++|++|++++|.++.... ..+..+++|+.|++++|
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 678888888777543221 12345566666666655
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=4.2e-13 Score=122.93 Aligned_cols=242 Identities=17% Similarity=0.364 Sum_probs=157.0
Q ss_pred EEEEEecCCCCcCccccccCCC-cccEEEecCC---CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002 92 IFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS---SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL 167 (357)
Q Consensus 92 l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~---~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 167 (357)
++.+.+.. .++.|...+|.+. +|+.+.+.++ .++.+...+|.+. .+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehhhhhhhhcccccc
Confidence 55566653 3666667777654 6777776543 3566666666554 33444443322 344444444444444444
Q ss_pred eccCC----------------------ccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc-------
Q psy15002 168 ELLHN----------------------RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH------- 218 (357)
Q Consensus 168 ~l~~n----------------------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------- 218 (357)
.+..+ .++.+...+|...+|+.+.+..+ +..+...+|..+.+++......
T Consensus 143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~ 221 (394)
T 4gt6_A 143 TIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAID 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred cccceeeeecccceecccccccccccceeeEeccccccccceeEEEECCc-ccccccchhhhccccceeccccccccccc
Confidence 44321 23344444444444444444322 2223333444444443332211
Q ss_pred -----------------------------ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002 219 -----------------------------NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269 (357)
Q Consensus 219 -----------------------------n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 269 (357)
+.+..+...+|.++..|+.+.+.++ +..+...+|... +.|+.+.+. +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c-~~L~~i~l~-~~ 298 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNC-PALQDIEFS-SR 298 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTC-TTCCEEECC-TT
T ss_pred ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccc-cccccccCC-Cc
Confidence 1233344567888888999988765 456777888887 799999996 56
Q ss_pred CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcc
Q psy15002 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342 (357)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l 342 (357)
++.++..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++..
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 88899899999999999999865 99999999999999999999754 8999999999999999999998854
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=2.4e-13 Score=124.51 Aligned_cols=244 Identities=15% Similarity=0.245 Sum_probs=150.1
Q ss_pred CCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC
Q psy15002 101 NLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 179 (357)
Q Consensus 101 ~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 179 (357)
++++|+..+|.+. +|+++.+.+ .++.|...+|.+. .+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 4677888888775 788888874 4888888888877 56888888754 77888888888888887766533 333333
Q ss_pred CCC----------------------CC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCC
Q psy15002 180 GDF----------------------EG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE 236 (357)
Q Consensus 180 ~~~----------------------~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 236 (357)
.+| .. .+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+...+|.++..|+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 333 33 44555555432 34455555555555555555543 4444444555555554
Q ss_pred EEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcC--------------------ce
Q psy15002 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--------------------AL 296 (357)
Q Consensus 237 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------~~ 296 (357)
.+.+..+.. .+....+.. ..++.+.+.. .++.+....+..+..++.+.+..+.. ..
T Consensus 212 ~i~~~~~~~-~i~~~~~~~--~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 212 NMEFPNSLY-YLGDFALSK--TGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp BCCCCTTCC-EECTTTTTT--CCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE
T ss_pred eeecCCCce-Eeehhhccc--CCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee
Confidence 444433221 111111111 2344444332 22333333444444555444443311 12
Q ss_pred eCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 297 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
++...|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.+ .++.|...+|.++.+|
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSL 345 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTC
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCC
Confidence 45556777888999998765 8889999999999999999975 4999999999998765
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.6e-16 Score=153.45 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCcCceeecccccCcccCc-ccCCCCCCCCEEEccCC
Q psy15002 207 SLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFEN 243 (357)
Q Consensus 207 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n 243 (357)
.+++|+.|++++|.++.... ..+..+++|+.|++++|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 35678888888877553221 12345677777777766
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.50 E-value=7.6e-12 Score=113.93 Aligned_cols=230 Identities=16% Similarity=0.298 Sum_probs=173.5
Q ss_pred cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193 (357)
Q Consensus 114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 193 (357)
+++.+.+... ++.|...+|.+. .+|+.+.+..+ ++.|...+|.++ +|+.+.+.. .++.+...+|...+|+.+.+.
T Consensus 47 ~i~~v~ip~~-vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNSG-ITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GCSEEEECTT-EEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred CCEEEEeCCC-ccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence 7999999754 999999999988 67999999754 899999999987 688888764 588999999999999999997
Q ss_pred CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCC----------------------------------------
Q psy15002 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD---------------------------------------- 233 (357)
Q Consensus 194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------------------------------------- 233 (357)
.+ +..+...+|... +++.+.+..+ ++.+....|....
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 64 556666666554 4555444332 3333333333333
Q ss_pred -------------------CCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcC
Q psy15002 234 -------------------TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294 (357)
Q Consensus 234 -------------------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 294 (357)
.|+.+.+..+ +..+....|... ..|+.+.+..+ ++.+...++..+.+|+.+.+.. .+
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i 274 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KV 274 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhccccccc-cc
Confidence 3333333322 334444555555 57777777654 6677777788888899888864 48
Q ss_pred ceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356 (357)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l 356 (357)
+.++..+|.++.+|+.+.+.++.++.++..+|.+|.+|+.++|..+ ++.|...+|.++.+|
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 8888889999999999999999999999999999999999999764 999999999998765
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=7.8e-17 Score=133.37 Aligned_cols=134 Identities=28% Similarity=0.385 Sum_probs=95.8
Q ss_pred ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCC
Q psy15002 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283 (357)
Q Consensus 204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 283 (357)
.+..+++|++|++++|.+..++ .+..+++|+.|++++|+++.++ ..+..+ ++|+.|++++|.+++++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~L~~N~l~~l~--~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVA-DTLEELWISYNQIASLS--GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHHHH-HHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-chhhcC-CcCCEEECcCCcCCcCC--ccccCCC
Confidence 5666777778888777777754 5666777888888888777653 344444 67888888888887765 3667778
Q ss_pred CcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc----------cCCCCCCCcEEeCCCCccccc
Q psy15002 284 LRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR----------VFAHLPLLNSLELDGNHIHTV 345 (357)
Q Consensus 284 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~L~L~~N~l~~~ 345 (357)
|++|++++|.++.++. ..+..+++|+.|++++|.+.+.++. .+..+++|+.|| +|+++..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 8888888888887654 4566788888888888888655332 356778888886 6766554
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.2e-16 Score=130.65 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=111.3
Q ss_pred CCCcCceeecccccCcccCcc------cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002 207 SLNHLLILNLNHNKISALHSN------AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280 (357)
Q Consensus 207 ~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 280 (357)
....++.++++.+.+....+. .+..+++|+.|++++|+++.++ .+..+ ++|+.|++++|.++.++. .+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l-~~L~~L~l~~n~l~~l~~-~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGM-ENLRILSLGRNLIKKIEN-LDAV 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHH-TTCCEEEEEEEEECSCSS-HHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccC-CCCCEEECCCCCcccccc-hhhc
Confidence 344555566666555544333 6788899999999999999874 77777 899999999999998874 4666
Q ss_pred CCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc-ccCCCCCCCcEEeCCCCcccccCcc
Q psy15002 281 LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPA 348 (357)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~ 348 (357)
+++|++|++++|++++++ .+..+++|+.|++++|++++++. ..+..+++|+.|++++|++.+..+.
T Consensus 92 ~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 789999999999999986 47778999999999999998775 4578899999999999999887544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=1.3e-12 Score=117.49 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=80.4
Q ss_pred CCCCCCCCCc-eeccccCCeEEecccC-ChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecC-C
Q psy15002 47 CPPHNEISPC-QCSVKKNGLDILCEFT-DNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN-S 123 (357)
Q Consensus 47 Cp~~~~~~~C-~C~~~~~~~~~~C~~~-~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~-~ 123 (357)
||. .| .|... .++|.+. +++.+| . .....+|+.|+|++ |
T Consensus 1 cp~-----~c~~C~~~----~v~~~~~n~l~~ip----------------------------~-l~~~~~L~~L~l~~~n 42 (347)
T 2ifg_A 1 CPD-----ACCPHGSS----GLRCTRDGALDSLH----------------------------H-LPGAENLTELYIENQQ 42 (347)
T ss_dssp CCS-----SSCCSSSS----CEECCSSCCCTTTT----------------------------T-SCSCSCCSEEECCSCS
T ss_pred CCC-----cCccccCC----EEEcCCCCCCCccC----------------------------C-CCCCCCeeEEEccCCC
Confidence 888 59 99643 6788766 555554 3 12222566667764 6
Q ss_pred CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCee
Q psy15002 124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199 (357)
Q Consensus 124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 199 (357)
.++.+++..|.++ ++|++|+|++|.|+++++..|.++++|++|+|++|.|+.+|+..+....|+.|++.+|.+..
T Consensus 43 ~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 43 HLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 6766666666666 56888888888888877777778888888888888888777777766558888888777653
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.5e-12 Score=117.13 Aligned_cols=105 Identities=26% Similarity=0.364 Sum_probs=71.2
Q ss_pred ceeecccc-cCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEc
Q psy15002 212 LILNLNHN-KISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289 (357)
Q Consensus 212 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 289 (357)
..++++++ +++.++. +..+++|+.|+|++ |.++.+++..|..+ ++|+.|+|++|+++++++..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34566666 6766644 66667777777774 77777766666666 67777777777777777666677777777777
Q ss_pred cCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320 (357)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 320 (357)
++|+++.+++..+..++ |+.|+|++|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777777666665544 7777777776653
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=7.5e-15 Score=133.11 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCCCcEEeccCCcccccc-----CCCCCC-CCCCeEECCCCCCeeeCcccc-CCCCcCceeecccccCcccCcccC----
Q psy15002 161 LENLRKLELLHNRIALIE-----EGDFEG-KALTQLDLSQNSLAVVPSPAL-KSLNHLLILNLNHNKISALHSNAF---- 229 (357)
Q Consensus 161 l~~L~~L~l~~n~l~~~~-----~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l---- 229 (357)
+++|++|++++|.++... ..+... .+|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999987432 222222 588999999998865433222 235678899999998876544433
Q ss_pred -CCCCCCCEEEccCCcCcccCCCcc----ccccccccEEEccCCcCcccC----cccccCCCCCcEEEccCCcCceeCcC
Q psy15002 230 -QGLDTLEILTIFENKLSLIEPDSF----KGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRIALIEEG 300 (357)
Q Consensus 230 -~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~ 300 (357)
...++|+.|++++|.++......+ ... ++|+.|++++|.++... ...+...++|++|++++|.++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 345788999999998876433222 334 67888999888887543 23455667888888888888765432
Q ss_pred ----cCCCCCCCCEeecCCCcCcccCcccCCCC---C--CCcEEe--CCCCccc
Q psy15002 301 ----DFEGLHNLDSLVLAHNQLRTIPPRVFAHL---P--LLNSLE--LDGNHIH 343 (357)
Q Consensus 301 ----~~~~~~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~L~--L~~N~l~ 343 (357)
.+...++|+.|+|++|.|+......+..+ . .++.+. +.+|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23346788888888888875443222211 2 166666 6666554
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.7e-14 Score=130.72 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=103.0
Q ss_pred ccceEEEccCCcCceeChhhhcCC-----CCCcEEeccCCccccccCC-CC-CCCCCCeEECCCCCCeeeCcccc-----
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRIALIEEG-DF-EGKALTQLDLSQNSLAVVPSPAL----- 205 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~----- 205 (357)
+.|++|++++|.++......+... ++|++|++++|.++..... +. ..++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 457777777777665444433322 5677777777766532111 11 12567777777777765443332
Q ss_pred CCCCcCceeecccccCcccCc----ccCCCCCCCCEEEccCCcCcccC----CCccccccccccEEEccCCcCcccCcc-
Q psy15002 206 KSLNHLLILNLNHNKISALHS----NAFQGLDTLEILTIFENKLSLIE----PDSFKGLEKKLKRLNLGGNELTRVPQT- 276 (357)
Q Consensus 206 ~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~- 276 (357)
...++|++|++++|.++.... ..+...++|++|+|++|.++... ...+... ++|+.|++++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHHHH
Confidence 235677788888877764322 23355677888888888776543 2233334 5788888888887754322
Q ss_pred ---cccCCCCCcEEEccCCcCceeCcCcCCCC---C--CCCEee--cCCCcCc
Q psy15002 277 ---SLSKLENLRKLELLHNRIALIEEGDFEGL---H--NLDSLV--LAHNQLR 319 (357)
Q Consensus 277 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--L~~n~l~ 319 (357)
.+...++|++|++++|.|+......+... . .++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23345778888888888776544333211 2 166666 5555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=7.8e-10 Score=99.45 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=36.9
Q ss_pred ccceEEEccCCcCce-----e----ChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCcccc--C
Q psy15002 138 KKLKRLNLGGNELTR-----V----PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPAL--K 206 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~-----~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~ 206 (357)
++|+.|.+.+..... + ....+..+|+|+.|+++++.-..+++ ...++|++|++..+.+..-....+ .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence 467777775543211 1 11234556677777776653112222 124556666665555433221122 1
Q ss_pred CCCcCceeecc
Q psy15002 207 SLNHLLILNLN 217 (357)
Q Consensus 207 ~l~~L~~L~l~ 217 (357)
.+|+|+.|+|+
T Consensus 217 ~lp~L~~L~L~ 227 (362)
T 2ra8_A 217 DLPNLEKLVLY 227 (362)
T ss_dssp BCTTCCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 45555555553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=4.9e-09 Score=94.25 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=99.4
Q ss_pred hcCCCCCcEEeccCCcccc----------ccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc
Q psy15002 158 LSKLENLRKLELLHNRIAL----------IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN 227 (357)
Q Consensus 158 ~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 227 (357)
...+++|+.|.+....... +...+...|+|+.|+++++.-..+++ +. +++|+.|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence 4456778888776543221 11112233778888887763222322 22 67888888877766543222
Q ss_pred cC--CCCCCCCEEEccC--Cc------CcccCCCccc-cccccccEEEccCCcCcccCcccc---cCCCCCcEEEccCCc
Q psy15002 228 AF--QGLDTLEILTIFE--NK------LSLIEPDSFK-GLEKKLKRLNLGGNELTRVPQTSL---SKLENLRKLELLHNR 293 (357)
Q Consensus 228 ~l--~~l~~L~~L~L~~--n~------l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~ 293 (357)
.+ ..+|+|+.|+|+. +. +..+.+ .+. ...++|+.|++.+|.+.......+ ..+++|++|+|+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 23 2567888887753 11 111111 111 112678888888887764221111 246788888888888
Q ss_pred CceeCcC----cCCCCCCCCEeecCCCcCcccCcccCCC-CCCCcEEeCCCCc
Q psy15002 294 IALIEEG----DFEGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNH 341 (357)
Q Consensus 294 l~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~N~ 341 (357)
++..... .+..+++|+.|++++|.++......+.. + ...+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7764321 2234678888888888776433222222 2 3567887776
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.38 E-value=3.9e-07 Score=69.12 Aligned_cols=38 Identities=34% Similarity=0.357 Sum_probs=29.3
Q ss_pred ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc
Q psy15002 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 175 (357)
Q Consensus 138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 175 (357)
.+|++|+|++|.|+.++.+.|..+++|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45778888888888888777888888888888877654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=6.8e-08 Score=78.37 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=6.6
Q ss_pred cceEEEccCC-cCc
Q psy15002 139 KLKRLNLGGN-ELT 151 (357)
Q Consensus 139 ~L~~L~ls~n-~l~ 151 (357)
+|++|++++| .+.
T Consensus 37 ~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 37 DLEEVNLNNIMNIP 50 (185)
T ss_dssp TCCEEECTTCTTCC
T ss_pred CCCEEEecCCCCCC
Confidence 3555555555 444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=8.9e-08 Score=77.67 Aligned_cols=38 Identities=34% Similarity=0.282 Sum_probs=16.6
Q ss_pred CcCceeecccccCcccC----cccCCCCCCCCEEEc--cCCcCc
Q psy15002 209 NHLLILNLNHNKISALH----SNAFQGLDTLEILTI--FENKLS 246 (357)
Q Consensus 209 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L--~~n~l~ 246 (357)
++|++|++++|.+.... ...+...++|+.|++ ++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 44445555555444321 223333444555555 445444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=1.3e-06 Score=74.64 Aligned_cols=63 Identities=29% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCCCEEEccCCcCcccCC--CccccccccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCcCc
Q psy15002 231 GLDTLEILTIFENKLSLIEP--DSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIA 295 (357)
Q Consensus 231 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 295 (357)
.+++|+.|+|++|+++++.. ..+..+ ++|+.|+|++|.++++.. ..+..+ +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 45677777777777766532 233334 566666666666655421 111222 4555555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=3.3e-07 Score=78.31 Aligned_cols=61 Identities=34% Similarity=0.445 Sum_probs=26.8
Q ss_pred ccccEEEccCCcCcccCc--ccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCc
Q psy15002 258 KKLKRLNLGGNELTRVPQ--TSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 258 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~ 319 (357)
++|+.|+|++|.+++++. ..+..+++|+.|+|++|+++++.. ..+..+ +|++|+|++|.++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 345555555555544331 222344555555555555544411 112222 4555555555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=9.5e-07 Score=70.15 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCCEEEccCCcCcccCCCccccccccccEEEccCCc-CcccCcccccCC----CCCcEEEccCCc-CceeCcCcCCCCCC
Q psy15002 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKL----ENLRKLELLHNR-IALIEEGDFEGLHN 307 (357)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 307 (357)
.|+.||++++.++......+.++ ++|+.|++++|. +++..-..+..+ ++|++|++++|. |++-....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45566666655554443444444 455555555553 333222222222 245555555542 44433333344455
Q ss_pred CCEeecCCC
Q psy15002 308 LDSLVLAHN 316 (357)
Q Consensus 308 L~~L~L~~n 316 (357)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.8e-06 Score=66.65 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=49.8
Q ss_pred cCceeecccccCcccCcccCCCCCCCCEEEccCCc-CcccCCCccccc---cccccEEEccCCc-CcccCcccccCCCCC
Q psy15002 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENK-LSLIEPDSFKGL---EKKLKRLNLGGNE-LTRVPQTSLSKLENL 284 (357)
Q Consensus 210 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~~~~~~~l~~L 284 (357)
+|+.|+++++.++......+.++++|+.|+|++|. ++......+... .++|+.|++++|. ++......+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666655544555666677777777763 444322333321 1357777777763 665443445667778
Q ss_pred cEEEccCCc
Q psy15002 285 RKLELLHNR 293 (357)
Q Consensus 285 ~~L~l~~n~ 293 (357)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888777763
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.75 E-value=4.6e-05 Score=57.57 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=43.8
Q ss_pred cEEEccCCcCc--ccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002 261 KRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319 (357)
Q Consensus 261 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 319 (357)
..++.++++++ .+|.. +. ++|++|+|++|+|+.++...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888887 77743 22 46888888888888888888888888888888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00022 Score=57.67 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=7.9
Q ss_pred CCCCCCCEEEccCCcCc
Q psy15002 230 QGLDTLEILTIFENKLS 246 (357)
Q Consensus 230 ~~l~~L~~L~L~~n~l~ 246 (357)
...+.|+.|+|++|++.
T Consensus 67 ~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSCCCEEECTTSCCB
T ss_pred hhCCCcCEEEccCCCCC
Confidence 33344444555444444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00015 Score=58.61 Aligned_cols=114 Identities=10% Similarity=0.020 Sum_probs=78.9
Q ss_pred cCCCCCCCCEEEccCC-cCcccC----CCccccccccccEEEccCCcCcccCcc----cccCCCCCcEEEccCCcCceeC
Q psy15002 228 AFQGLDTLEILTIFEN-KLSLIE----PDSFKGLEKKLKRLNLGGNELTRVPQT----SLSKLENLRKLELLHNRIALIE 298 (357)
Q Consensus 228 ~l~~l~~L~~L~L~~n-~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~ 298 (357)
.+..-+.|+.|+|++| ++.... ...+..- +.|+.|+|++|.+...... .+.....|++|+|++|.|+...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 3455678899999885 665422 1233333 6899999999999864432 3445689999999999998644
Q ss_pred c----CcCCCCCCCCEeecCCCc---Cccc----CcccCCCCCCCcEEeCCCCcc
Q psy15002 299 E----GDFEGLHNLDSLVLAHNQ---LRTI----PPRVFAHLPLLNSLELDGNHI 342 (357)
Q Consensus 299 ~----~~~~~~~~L~~L~L~~n~---l~~~----~~~~~~~~~~L~~L~L~~N~l 342 (357)
. .++...+.|+.|+|++|. +..- ...++...+.|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3 355667789999998763 3421 123445668899999987754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.31 E-value=0.55 Score=33.01 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=36.2
Q ss_pred CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC
Q psy15002 267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316 (357)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 316 (357)
+..++.+...+|.++.+|+.+.+-.+ ++.|...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566677777778888888887754 77777778888888888887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.41 E-value=1.4 Score=30.93 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=26.4
Q ss_pred CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002 243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292 (357)
Q Consensus 243 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 292 (357)
..++.+...+|.++ .+|+.+.+..+ ++.+...+|..+.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555555555555 55666655542 45555555666666666655543
No 167
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=23.40 E-value=48 Score=16.23 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.7
Q ss_pred cCCCCCCCCCCceeccc
Q psy15002 45 QQCPPHNEISPCQCSVK 61 (357)
Q Consensus 45 ~~Cp~~~~~~~C~C~~~ 61 (357)
..||+.+.-.+|-|...
T Consensus 9 ~gCpWGQ~~~~~GCSgp 25 (27)
T 1ans_A 9 GGCPWGQNCYPEGCSGP 25 (27)
T ss_dssp TTCSSSCSSCSSCSSSS
T ss_pred cCCccccccccccCcCC
Confidence 57888877778888653
Done!