RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15002
(357 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 56.4 bits (137), Expect = 1e-10
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
NL+ L+L +NR+ +I +G F+GL NL L L+ N L +I P F+ LP L SL+L GN++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 53.3 bits (129), Expect = 1e-09
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
LK L+L N LT +P + L NL+ L+L N + I F GL +L SL L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 47.5 bits (114), Expect = 1e-07
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
LK L+L N LT +P + L NL+ L+L N + I F G +L LDLS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 46.8 bits (112), Expect = 3e-07
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
L+ L + N+L++I +FKGL LK L+L GN LT + + S L +LR L+L N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 46.4 bits (111), Expect = 3e-07
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
L LDLS N L V+P A K L +L +L+L+ N ++++ AF GL +L L + N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 45.6 bits (109), Expect = 7e-07
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
+L L+L++N+++ + AF+GL L++L + N L+ I P++F GL L+ L+L GN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLDLSGNN 59
Query: 270 L 270
L
Sbjct: 60 L 60
Score = 45.2 bits (108), Expect = 1e-06
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
NL SL L++N+L IP F LP L L+L GN++ ++ P AFSGL +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS 49
Score = 41.8 bits (99), Expect = 1e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 163 NLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI 221
NL+ L+L +NR+ +I +G F+G L LDLS N+L + A L L L+L+ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.8 bits (99), Expect = 1e-05
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
++ L + N+ L V+ + + LK L+L GN LT + + S L +LR L+L N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 61.4 bits (149), Expect = 3e-10
Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 30/270 (11%)
Query: 113 LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
L+I HL +N + + +L+S+ +L+ L L N+ + +L K NL L+L N
Sbjct: 310 LEILHLFSNNFTGKIPV--ALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 173 RIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA-------- 223
+ I EG L +L L NSL +L + L + L N S
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426
Query: 224 --------LHSNAFQG--------LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
+ +N QG + +L++L++ NK PDSF K+L+ L+L
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSR 484
Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
N+ + L L L +L+L N+++ + L SL L+HNQL P F+
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544
Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLEAKV 357
+P+L+ L+L N + P +E+ V
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574
Score = 54.5 bits (131), Expect = 4e-08
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 3/205 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ-LDLSQNSLA 198
L +L L N L SL +LR++ L N + +F L LD+S N+L
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ + L +L+L NK ++F G LE L + N+ S P L +
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
L +L L N+L+ LS + L L+L HN+++ F + L L L+ NQL
Sbjct: 501 -LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIH 343
P+ ++ L + + NH+H
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLH 584
Score = 43.7 bits (103), Expect = 1e-04
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 10/254 (3%)
Query: 104 KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLE 162
K++ IF I+ + + N+ L+ + + L+ LNL N T +P+ S+ LE
Sbjct: 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143
Query: 163 NLRKLELLHNRIA---LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
L +L +N ++ + G F +L LDL N L +L +L L L L N
Sbjct: 144 TL---DLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198
Query: 220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
++ + +L+ + + N LS P GL L L+L N LT +SL
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPSSLG 257
Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
L+NL+ L L N+++ L L SL L+ N L P + L L L L
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 340 NHIHTVDPAAFSGL 353
N+ P A + L
Sbjct: 318 NNFTGKIPVALTSL 331
Score = 42.9 bits (101), Expect = 2e-04
Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 94 YLKLRHNNL--PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
YL L +NN G I L+ L+ + S + + S LK L+LGGN L
Sbjct: 122 YLNLSNNNFTGSIPRGSIP-NLETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLV 177
Query: 152 RVPQTSLSKLENLRKLELLHNRIA---LIEEGDFEGKALTQLDLSQNSLA-VVPSP--AL 205
SL+ L +L L L N++ E G K+L + L N+L+ +P L
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGL 235
Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
SLNHL +L +N ++ ++ L L+ L +++NKLS P S L +KL L+L
Sbjct: 236 TSLNHL---DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDL 291
Query: 266 GGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPR 324
N L+ +P+ + L+ LE+LH L N P
Sbjct: 292 SDNSLSGEIPEL----VIQLQNLEILH---------------------LFSNNFTGKIPV 326
Query: 325 VFAHLPLLNSLELDGN 340
LP L L+L N
Sbjct: 327 ALTSLPRLQVLQLWSN 342
Score = 36.7 bits (85), Expect = 0.021
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA-----------------LHSNAF 229
+ +DLS +++ S A+ L ++ +NL++N++S L +N F
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130
Query: 230 QG------LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
G + LE L + N LS P+ G LK L+LGGN L SL+ L +
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
L L L N++ + + +L + L +N L P L LN L+L N++
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 344 TVDPAAFSGL 353
P++ L
Sbjct: 250 GPIPSSLGNL 259
Score = 32.9 bits (75), Expect = 0.27
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+ ++ ++L+ IS S+A L ++ + + N+LS PD L+ LNL N
Sbjct: 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128
Query: 269 ELT-RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
T +P+ S+ LE L+L +N ++ D +L L L N L P
Sbjct: 129 NFTGSIPRGSIPNLET---LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185
Query: 328 HLPLLNSLELDGNHI 342
+L L L L N +
Sbjct: 186 NLTSLEFLTLASNQL 200
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 54.6 bits (131), Expect = 3e-08
Identities = 65/214 (30%), Positives = 91/214 (42%), Gaps = 10/214 (4%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
L L+L N +T +P NL++L+L N+I + L LDLS N L
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ +P N L L+L+ NKIS L + L LE L + N + +
Sbjct: 176 SDLPKLLSNLSN-LNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSN--L 231
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K L L L N+L +P S+ L NL L+L +N+I+ I L NL L L+ N
Sbjct: 232 KNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
L P LL LEL N + T+
Sbjct: 289 LSNALP---LIALLLLLLELLLNLLLTLKALELK 319
Score = 44.2 bits (104), Expect = 6e-05
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
L LDL+ N L S L L +L L+L++N I+ + L+ L + +NK+
Sbjct: 95 LPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
+ LK L+L N+L+ +P LS L NL L+L N+I+ + + E L
Sbjct: 154 SLPSP--LRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP-EIELLS 209
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L+ L L++N + + ++L L+ LEL N
Sbjct: 210 ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNN 242
Score = 37.3 bits (86), Expect = 0.010
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 7/229 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L L N + L + ++++L + + L+ + L S L L+L GN+++ +
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKISDL 201
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
P + L L +L+L +N I + K L+ L+LS N L +P + +L++L
Sbjct: 202 P-PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLET 259
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG-NELTR 272
L+L++N+IS++ S L L L + N LS P L LNL +
Sbjct: 260 LDLSNNQISSISSLG--SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317
Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
+ S+ N+ + AL L LD+ + N R I
Sbjct: 318 LKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYI 366
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 43.1 bits (101), Expect = 2e-04
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 36/219 (16%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193
+ I +++ L L NEL +P+ N++ L N++ I + +++LS
Sbjct: 195 ACIPEQITTLILDNNELKSLPENLQG---NIKTLYANSNQLTSIPAT--LPDTIQEMELS 249
Query: 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEI---------------- 237
N + +P +L L L HNKIS L N + L L +
Sbjct: 250 INRITELPERLPSALQSLD---LFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGI 306
Query: 238 --LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
L + N L+ + P++ L LK L G N LT +P + +L+ L++ N+I
Sbjct: 307 THLNVQSNSLTAL-PET---LPPGLKTLEAGENALTSLPASLPPELQV---LDVSKNQIT 359
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
++ E + LD ++ N L +P + A L ++ +
Sbjct: 360 VLPETLPPTITTLD---VSRNALTNLPENLPAALQIMQA 395
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 40.2 bits (94), Expect = 0.001
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
L HL +NL+ N I + + +LE+L + N + P+S G L+ LNL G
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNG 499
Query: 268 NELT-RVP 274
N L+ RVP
Sbjct: 500 NSLSGRVP 507
Score = 35.6 bits (82), Expect = 0.039
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
+ L ++LS NS+ P+L S+ L +L+L++N + + L +L IL + N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGN 268
LS P + G N N
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTDN 525
Score = 34.0 bits (78), Expect = 0.13
Identities = 25/91 (27%), Positives = 36/91 (39%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
L L L +SKL +L+ + L N I + +L+ L L++N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
P L L L L+GN + PAA G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
Score = 30.9 bits (70), Expect = 1.1
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGKALTQLDLSQNS 196
+ L+ +NL GN + SL + +L L+L +N I E + +L L+L+ NS
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 197 LA-VVPSPALKSLNHLLILNLNHN 219
L+ VP+ L H N N
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTDN 525
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.8 bits (83), Expect = 0.024
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 39/189 (20%)
Query: 132 SLSSIGKKLKRLNLGGNELTRVPQTSLSK-LENLRKLELLHNR--------IALIEEGDF 182
L + L++L LG N L +L+K L R L+ L+ I + EG
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190
Query: 183 EGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEIL 238
L LDL+ N L A + L SL L +LNL N ++ G L
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA------GAAALA-- 242
Query: 239 TIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL----ENLRKLELLHNRI 294
+ L L+L N++T L+++ E+L +L+L N+
Sbjct: 243 ------------SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK- 289
Query: 295 ALIEEGDFE 303
EEG
Sbjct: 290 -FGEEGAQL 297
Score = 31.9 bits (73), Expect = 0.49
Identities = 62/260 (23%), Positives = 93/260 (35%), Gaps = 62/260 (23%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKL------KRLNLGGNELTRVPQTSLSKLENLRKLE 168
+ L + + E + ++ L K L L NE R+P+ S L+ L K
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-- 79
Query: 169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNH---LLILNLNHNKISALH 225
G L +LDLS N+L L+SL L L LN+N +
Sbjct: 80 ---------------GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-- 122
Query: 226 SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL---- 281
+GL L K L L++L LG N L +L+K
Sbjct: 123 ----RGLRLLA--------------KGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164
Query: 282 ENLRKLELLHNRIALIEEG------DFEGLHNLDSLVLAHNQLRTIPPR----VFAHLPL 331
+L++L L +N + + G + NL+ L L +N L A L
Sbjct: 165 RDLKELNLANN--GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222
Query: 332 LNSLELDGNHIHTVDPAAFS 351
L L L N++ AA +
Sbjct: 223 LEVLNLGDNNLTDAGAAALA 242
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 31.3 bits (72), Expect = 0.061
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 179
L+ L+L N++T +P LS L NL L+L N+I +
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 31.3 bits (72), Expect = 0.061
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 299
L+ L+L N++T +P LS L NL L+L N+I +
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.090
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
NL++L L++NQ+ +PP ++LP L +L+L GN I + P
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.16
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
L LDLS N + +P L +L +L L+L+ NKI+ L
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDL 38
Score = 29.4 bits (67), Expect = 0.27
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
NL L+L +N+I + L NL++L L+ N++ + P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 25.9 bits (58), Expect = 4.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
+L L+L++N+I+ L L LE L + NK++ + P
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.4 bits (70), Expect = 0.077
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAH 328
L NL L L++NQL ++PP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.0 bits (69), Expect = 0.11
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 208 LNHLLILNLNHNKISALHSNAFQG 231
L +L L+L++N++S+L AFQG
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.4 bits (70), Expect = 0.077
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAH 328
L NL L L++NQL ++PP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.0 bits (69), Expect = 0.11
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 208 LNHLLILNLNHNKISALHSNAFQG 231
L +L L+L++N++S+L AFQG
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 34.5 bits (79), Expect = 0.095
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIE------PDSFKGLEKKLKRLNLGGNELTRVPQTS 277
+H NAF+G+ L L + K + P+ F L KL+ L L +P S
Sbjct: 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP--S 606
Query: 278 LSKLENLRKLELLHNRIALIEEG--DFEGLHNLD 309
+ ENL KL++ +++ + +G GL N+D
Sbjct: 607 NFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 33.7 bits (77), Expect = 0.14
Identities = 50/226 (22%), Positives = 76/226 (33%), Gaps = 40/226 (17%)
Query: 103 PKLTGFIFFGLDIRHLTIHNSSL----------AVVEESSLSSIGKK--LKRLNLGGNEL 150
+L I D+ HL ++N+ L A+ + K L+ + G N L
Sbjct: 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169
Query: 151 TRVPQTSLSKL----ENLRKLELLHNRI------ALIEEGDFEGKALTQLDLSQNSLAVV 200
+ + L ENL+++++ N I L G F +L LDL N+ +
Sbjct: 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229
Query: 201 PS----PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
S AL N L L LN +S + L F N+ + G
Sbjct: 230 GSRYLADALCEWNLLRELRLNDCLLSNEGVKSV--------LRRF-NEKFVPNLMPLPG- 279
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 302
G + + + L LE NRI E DF
Sbjct: 280 --DYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK--ELADF 321
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 32.8 bits (74), Expect = 0.27
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 118 LTIHNSSLAVVEE--SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLE------------- 162
L H ++L + + +SL ++ +L+ L + GN+LT +P LE
Sbjct: 220 LPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA 279
Query: 163 ---NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
L KL + N++ + L +L +S N LA + PAL S L L +N
Sbjct: 280 LPSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQLASL--PALPS--ELCKLWAYNN 332
Query: 220 KISALHS------------NAFQGLDTLEI----LTIFENKLSLIEPDSFKGLEKKLKRL 263
++++L + N L TL L + N+L+ S L LK L
Sbjct: 333 QLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-----SLPALPSGLKEL 387
Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIA---LIEEGDFEGLHNLDSLVLAHNQLRT 320
+ GN LT +P L++L + NR+ ++ G L SL + NQL
Sbjct: 388 IVSGNRLTSLPVLP----SELKELMVSGNRLTSLPMLPSG-------LLSLSVYRNQLTR 436
Query: 321 IPPRVFAHLPLLNSLELDGN 340
+P + HL ++ L+GN
Sbjct: 437 LPESLI-HLSSETTVNLEGN 455
>gnl|CDD|226754 COG4304, COG4304, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 166
Score = 29.5 bits (66), Expect = 1.5
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQN 195
G KL LG ++ K+ NL + + ++LI + + L DL+
Sbjct: 23 YGNKL----LGWADVA----AYARKMTNLSEHDERVFELSLINKSNILELKLVLEDLASE 74
Query: 196 SLAVVPSPALKSLNHLLILNLNHNK 220
P A+K ++++ +L H K
Sbjct: 75 MRDYSPQSAIKKWLYVILSDLFHRK 99
>gnl|CDD|240531 cd13126, MATE_like_11, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 396
Score = 30.0 bits (68), Expect = 2.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 21 FGSSLATSFLCLLLLLPCCLLQSVQ 45
G ++ + + L ++LP LLQ
Sbjct: 97 LGGTVGSPLVALGVVLPGLLLQDAW 121
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 277
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 19 PKFGSSLATS--FLCLLLLLP 37
P F SL TS F+CL+LLLP
Sbjct: 11 PGFTLSLGTSLLFVCLILLLP 31
>gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase
domain of Staphylococcus aureus and similar proteins.
This subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in
uncharacterized glycerophosphodiester phosphodiesterase
(GP-GDE, EC 3.1.4.46) from Staphylococcus aureus,
Bacillus subtilis and similar proteins. Members in this
family show very high sequence similarity to Escherichia
coli periplasmic phosphodiesterase GlpQ, which catalyzes
the Ca2+-dependent degradation of periplasmic
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 256
Score = 28.8 bits (65), Expect = 4.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 234 TLE-ILTIFENKLSLI----EPDSFKGLEKKLK----RLNLGGNELT--RVPQTSLSKLE 282
TLE ++ + + + PD + G+E+KL + L + L +V S SK E
Sbjct: 100 TLEEVIERYGGRANYYIETKSPDLYPGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSK-E 158
Query: 283 NLRKLELLHNRIALI 297
+L+KL L+ I L+
Sbjct: 159 SLKKLHQLNPNIPLV 173
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 28.9 bits (66), Expect = 4.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 302 FEGLHNLDSLVLAHNQLRTI 321
FE L D+LV A L+T+
Sbjct: 265 FEALAAHDALVEASGALKTL 284
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 28.8 bits (65), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 327 AHLPLLNSLELDGNHIHTVDPAAFSGL 353
H PLL+ L+L G + VD A++ L
Sbjct: 108 EHRPLLDGLDLPGVRVLDVDTPAYAEL 134
>gnl|CDD|132257 TIGR03213, 23dbph12diox, 2,3-dihydroxybiphenyl 1,2-dioxygenase.
Members of this protein family all have activity as
2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme
of a pathway for biphenyl degradation. Many of the
extradiol ring-cleaving dioxygenases, to which these
proteins belong, act on a range of related substrates.
Note that some members of this family may be found
operons for toluene or naphthalene degradation, where
other activities of the same enzyme may be more
significant; the trusted cutoff for this model is set
relatively high to exclude most such instances [Energy
metabolism, Other].
Length = 286
Score = 28.5 bits (64), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 194 QNSLAVVPSPALKSLNHLLI 213
+SLA P+ K LNHL++
Sbjct: 193 HHSLAFAAGPSEKRLNHLML 212
>gnl|CDD|223001 PHA03148, PHA03148, hypothetical protein; Provisional.
Length = 289
Score = 28.1 bits (63), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 193 SQNSLAVVPSPALKSLNHLLI 213
S NSL +VPS + L HL +
Sbjct: 127 SHNSLRLVPSLDINPLQHLFL 147
>gnl|CDD|226834 COG4399, COG4399, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 376
Score = 28.1 bits (63), Expect = 7.2
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLD--LSQNSLAVVPSPALKSLNHLL 212
Q L KL N + + + ++ E F+ K L +L + +N+LA S L+++
Sbjct: 218 QQELLKLLNREETKKILQQLLTNEWPTFKEKPLNELTDEVVRNALAESLSVLLQAVPS-- 275
Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
+ N L +N ++ T E+ L D L + LKRL+L +
Sbjct: 276 --SQAFNNPITLITNQYESYVTEELAPKLVRYL---IEDLSSHLAQILKRLDLEELVEEQ 330
Query: 273 VPQTSLSKLENL 284
+ SL +LE L
Sbjct: 331 INTFSLERLEKL 342
>gnl|CDD|226397 COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms].
Length = 176
Score = 27.4 bits (61), Expect = 9.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 130 ESSLSSIGKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKAL 187
ES +S I + R+ G E + +VP+ K+ RK+ L + LIE +FE A+
Sbjct: 103 ESQISPI---ITRVQGGYVEHVGKVPKRIGRKINPKRKIIALKEALQDLIEREEFEEAAV 159
>gnl|CDD|147038 pfam04682, Herpes_BTRF1, Herpesvirus BTRF1 protein conserved
region. Herpesvirus protein.
Length = 256
Score = 27.7 bits (62), Expect = 9.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 193 SQNSLAVVPSPALKSLNHLLI 213
S NSL +P + L HL +
Sbjct: 94 SHNSLRFLPDLDINPLQHLFL 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.390
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,627,227
Number of extensions: 1701945
Number of successful extensions: 1601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 70
Length of query: 357
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 259
Effective length of database: 6,590,910
Effective search space: 1707045690
Effective search space used: 1707045690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.5 bits)