RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15002
(357 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 194 bits (495), Expect = 4e-58
Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 6/263 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L+L N + + F L +R L + ++ L ++ + + L +L++ N++
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVI 118
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ L NL+ LE+ N + I F G +L QL L + +L +P+ AL L+ L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTI-FENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
++L L H I+A+ +F+ L L++L I L + P+ GL L L++ L
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNL 236
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
T VP ++ L LR L L +N I+ IE L L + L QL + P F L
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296
Query: 331 LLNSLELDGNHIHTVDPAAFSGL 353
L L + GN + T++ + F +
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSV 319
Score = 191 bits (488), Expect = 4e-57
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 3/241 (1%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
+ R L + + + + + +S L+ L L N ++ V + + L NLR L L NR
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
+ LI G F G LT+LD+S+N + ++ + L +L L + N + + AF GL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
++LE LT+ + L+ I ++ L L L L + + S +L L+ LE+ H
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+ NL SL + H L +P HL L L L N I T++ +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 353 L 353
L
Sbjct: 271 L 271
Score = 181 bits (462), Expect = 3e-53
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 6/253 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L LR N L + +F GL + L I + + ++ + + LK L +G N+L
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVY 142
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ + S L +L +L L + I L L L ++ + + K L L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 212 LILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
+L ++H + + N GL L L+I L+ + + + L L+ LNL N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPI 260
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
+ + + L +L L++++L+ ++A++E F GL+ L L ++ NQL T+ VF +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 331 LLNSLELDGNHIH 343
L +L LD N +
Sbjct: 321 NLETLILDSNPLA 333
Score = 170 bits (433), Expect = 4e-49
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 6/215 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ + VP+ + R L+L NRI + + +F L +L+L++N ++
Sbjct: 14 RAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
V A +L +L L L N++ + F GL L L I ENK+ ++ F+ L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YN 129
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
LK L +G N+L + + S L +L +L L + I LH L L L H +
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 320 TIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGL 353
I F L L LE+ ++ T+ P GL
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Score = 158 bits (402), Expect = 1e-44
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 1/169 (0%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
LDL +N + + S HL L LN N +SA+ AF L L L + N+L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
LI F GL L +L++ N++ + L NL+ LE+ N + I F GL+
Sbjct: 94 LIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+L+ L L L +IP +HL L L L +I+ + +F L
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Score = 50.5 bits (121), Expect = 5e-07
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
L L N+++T+ FA P L LEL+ N + V+P AF+ L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 186 bits (473), Expect = 4e-55
Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+ LNL N + + + L +L L+L N I IE G F G +L L+L N L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLE 257
V+PS A + L+ L L L +N I ++ S AF + +L L + E KL I +F+GL
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
LK LNLG + +P +L+ L L +LE+ N I G F GL +L L + ++Q
Sbjct: 197 N-LKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ I F L L L L N++ ++ F+ L
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Score = 181 bits (460), Expect = 3e-53
Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 43/319 (13%)
Query: 24 SLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTT 83
L L + Q CP S C CS + + +
Sbjct: 23 YLTAQVWILCAAIAAAASAGPQNCP-----SVCSCSNQFSKVV----------------- 60
Query: 84 LKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRL 143
L ++ I + R+L + +++ +++ + + L+ L
Sbjct: 61 -------------CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVL 104
Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
LG N + ++ + + L +L LEL N + +I G FE L +L L N + +PS
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
Query: 203 PALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
A + L+ L+L K+ + AF+GL L+ L + + + + L L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPL-VGLE 221
Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L + GN + S L +L+KL +++++++LIE F+GL +L L LAHN L ++
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 322 PPRVFAHLPLLNSLELDGN 340
P +F L L L L N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
Score = 169 bits (430), Expect = 6e-49
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 8/219 (3%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
+ ++ L+ VPQ + N R L L+ N I +I+ F L L L +NS+
Sbjct: 55 QFSKVVCTRRGLSEVPQ-GIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ A L L L L N ++ + S AF+ L L L + N + I +F +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 258 KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L RL+LG +L + + + L NL+ L L I + + L L+ L ++ N
Sbjct: 172 S-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGN 228
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
I P F L L L + + + ++ AF GL +
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 184 bits (470), Expect = 9e-55
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+ LNL N++ + S L +L L+L N I IE G F G L L+L N L
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLE 257
+P+ A L+ L L L +N I ++ S AF + +L L + E +LS I +F+GL
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L+ LNL L +P +L+ L L +L+L N ++ I G F+GL +L L + +Q
Sbjct: 186 N-LRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
++ I F +L L + L N++ + F+ L
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280
Score = 182 bits (464), Expect = 7e-54
Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 43/324 (13%)
Query: 19 PKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQ 78
P + L S L +LL+ S Q CP S C CS + + +
Sbjct: 7 PGMPALLLVSLLSVLLMGCVAETGSAQTCP-----SVCSCSNQFSKVI------------ 49
Query: 79 HTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK 138
NL ++ I + R L +H + + +++ +S + +
Sbjct: 50 ------------------CVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-R 88
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
L+ L L N + + + + L NL LEL NR+ I G F L +L L N +
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 198 AVVPSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+PS A + L L+L ++S + AF+GL L L + L I + L
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPL 206
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
KL L+L GN L+ + S L +L+KL ++ ++I +IE F+ L +L + LAHN
Sbjct: 207 -IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 317 QLRTIPPRVFAHLPLLNSLELDGN 340
L +P +F L L + L N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289
Score = 169 bits (429), Expect = 7e-49
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 8/219 (3%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
+ ++ L VP +S N R L L N+I +I+ F+ + L L LS+N +
Sbjct: 44 QFSKVICVRKNLREVPD-GIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ A L +L L L N+++ + + AF L L+ L + N + I +F +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Query: 258 KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L+RL+LG L+ + + + L NLR L L + I + L LD L L+ N
Sbjct: 161 -SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGN 217
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
L I P F L L L + + I ++ AF L++
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 175 bits (445), Expect = 9e-53
Identities = 69/212 (32%), Positives = 97/212 (45%), Gaps = 3/212 (1%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
I +R+ L GN ++ VP S NL L L N +A I+ F G L QLDL
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 193 SQNS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
S N+ L V L L L+L+ + L F+GL L+ L + +N L + D
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
+F+ L L L L GN ++ VP+ + L +L +L L NR+A + F L L +L
Sbjct: 148 TFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
L N L +P A L L L L+ N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 168 bits (427), Expect = 3e-50
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 6/215 (2%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
+ L VP + +++ L NRI+ + F + LT L L N LA +
Sbjct: 16 TSCPQQGLQAVPV-GIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 202 SPALKSLNHLLILNLNHN-KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
+ A L L L+L+ N ++ ++ F GL L L + L + P F+GL L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AAL 131
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
+ L L N L +P + L NL L L NRI+ + E F GLH+LD L+L N++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ P F L L +L L N++ + A + L A
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 170 bits (432), Expect = 2e-50
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
+ L+L N++T + L+NL L L++N+I+ I G F L +L L
Sbjct: 48 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL--SLIEP 250
S+N L +P K+L L ++ N+I+ + + F GL+ + ++ + N L S IE
Sbjct: 108 SKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
+F+G+ KKL + + +T +PQ +L +L L N+I ++ +GL+NL
Sbjct: 165 GAFQGM-KKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L+ N + + A+ P L L L+ N + V P +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 262
Score = 164 bits (418), Expect = 3e-48
Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 10/244 (4%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
D L + N+ + +++ ++ K L L L N+++++ + + L L +L L N+
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQG 231
+ + E + L +L + +N + V LN ++++ L N + S + + AFQG
Sbjct: 112 LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
+ L + I + ++ I L + L+L GN++T+V SL L NL KL L
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTE----LHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
N I+ ++ G +L L L +N+L +P A + + L N+I + F
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 352 GLEA 355
Sbjct: 285 PPGY 288
Score = 157 bits (399), Expect = 2e-45
Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L++N + ++ F L ++ L + N+ ++ + + + + KL+RL L N+L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKNQLKE 114
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL--AVVPSPALKSLN 209
+P+ L++L + N I + + F G + ++L N L + + + A + +
Sbjct: 115 LPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L + + I+ + L L + NK++ ++ S KGL L +L L N
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLD---GNKITKVDAASLKGL-NNLAKLGLSFNS 227
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA-- 327
++ V SL+ +LR+L L +N++ + G + + L +N + I F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 328 ----HLPLLNSLELDGNHIHT--VDPAAFSGL 353
+ + L N + + P+ F +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Score = 156 bits (396), Expect = 6e-45
Identities = 61/259 (23%), Positives = 121/259 (46%), Gaps = 21/259 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L +N + K++ F L + L + + L + E + L+ L + NE+T+
Sbjct: 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT----LQELRVHENEITK 135
Query: 153 VPQTSLSKLENLRKLELLHNRI--ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
V ++ + L + +EL N + + IE G F+G K L+ + ++ ++ +P SL
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L +L+ NKI+ + + + +GL+ L L + N +S ++ S L+ L+L N+
Sbjct: 196 EL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNK 251
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDF------EGLHNLDSLVLAHNQLRT--I 321
L +VP L+ + ++ + L +N I+ I DF + + L N ++ I
Sbjct: 252 LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310
Query: 322 PPRVFAHLPLLNSLELDGN 340
P F + + +++L
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329
Score = 111 bits (280), Expect = 3e-28
Identities = 42/211 (19%), Positives = 94/211 (44%), Gaps = 16/211 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSL--AVVEESSLSSIGKKLKRLNLGGNEL 150
L++ N + K+ +F GL+ + + + + L + +E + + KKL + + +
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNI 183
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
T +PQ +L +L L N+I ++ +G L +L LS NS++ V + +L +
Sbjct: 184 TTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE-----KKLKRLN 264
HL L+LN+NK+ + ++++ + N +S I + F ++
Sbjct: 241 HLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 265 LGGNEL--TRVPQTSLSKLENLRKLELLHNR 293
L N + + ++ + ++L + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 75.8 bits (187), Expect = 1e-15
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+ + L +VP+ + L+L +N+I I++GDF+ L NL +L+L +N++
Sbjct: 33 LRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
I P FA L L L L N + + L+
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 163 bits (415), Expect = 8e-48
Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
I L+L N+++ + + L++L L L++N+I+ I E F + L +L +
Sbjct: 50 KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL--IEP 250
S+N L +P SL L ++ N+I + F GL + + + N L EP
Sbjct: 110 SKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
+F GL KL L + +LT +P+ L +L L HN+I IE D L
Sbjct: 167 GAFDGL--KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L HNQ+R I + LP L L LD N + V PA L
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDL 263
Score = 162 bits (412), Expect = 3e-47
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 11/246 (4%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
D L + N+ ++ + + + + L L L N+++++ + + S L L+KL + N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQG 231
+ I +L +L + N + VP L ++ + + N + S AF G
Sbjct: 114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
L L L I E KL+ I D + L + L+L N++ + L + L +L L H
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLPETLNE----LHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
N+I +IE G L L L L +N+L +P L LL + L N+I V F
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFC 285
Query: 352 GLEAKV 357
+ V
Sbjct: 286 PVGFGV 291
Score = 154 bits (390), Expect = 4e-44
Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L++N++ +L F GL + L + N+ ++ + E + S + +KL++L + N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKLQKLYISKNHLVE 116
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL--AVVPSPALKSLN 209
+P S L LR + NRI + +G F G + + +++ N L + A L
Sbjct: 117 IPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L ++ K++ + + + TL L + NK+ IE + KL RL LG N+
Sbjct: 174 -LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQ 228
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
+ + SLS L LR+L L +N+++ + G L L + L N + + F +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 330 ------PLLNSLELDGNHI--HTVDPAAFSGL 353
N + L N + V PA F +
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Score = 152 bits (387), Expect = 1e-43
Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 20/258 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L +N + K+ F L ++ L I + L + + SS L L + N + +
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS----LVELRIHDNRIRK 137
Query: 153 VPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNH 210
VP+ S L N+ +E+ N + E G F+G L L +S+ L +P ++LN
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L +L+HNKI A+ L L + N++ +IE S L L+ L+L N+L
Sbjct: 198 L---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKL 253
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH------NLDSLVLAHNQL--RTIP 322
+RVP L L+ L+ + L N I + DF + + + L +N + +
Sbjct: 254 SRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Query: 323 PRVFAHLPLLNSLELDGN 340
P F + +++
Sbjct: 313 PATFRCVTDRLAIQFGNY 330
Score = 80.1 bits (198), Expect = 5e-17
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 11/165 (6%)
Query: 88 SGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG 147
GL + YL++ L + + L L + ++ + +E L KL RL LG
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETL--NELHLDHNKIQAIELEDLLRY-SKLYRLGLGH 226
Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKS 207
N++ + SLS L LR+L L +N+++ + G + K L + L N++ V
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Query: 208 LN------HLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENK 244
+ + ++L +N + + F+ + + K
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 76.6 bits (189), Expect = 6e-16
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+ + L VP+ + L+L +N I+ + + DF+GL +L +LVL +N++
Sbjct: 35 LRVVQCSDLGLKAVPKEISP---DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
I + F+ L L L + NH+ + P S L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126
Score = 33.5 bits (77), Expect = 0.087
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 21/68 (30%)
Query: 307 NLDSLVLAHNQLRTIP---------------------PRVFAHLPLLNSLELDGNHIHTV 345
+L + + L+ +P F L L +L L N I +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 346 DPAAFSGL 353
AFS L
Sbjct: 94 HEKAFSPL 101
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 160 bits (407), Expect = 7e-47
Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 7/225 (3%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE--EGDFEG-KALTQL 190
+ I RL L N+L +P KL L KL L N ++ G +L L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIE 249
DLS N + + S L L L+ H+ + + + F L L L I +
Sbjct: 84 DLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 250 PDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
F GL L+ L + GN ++L NL L+L ++ + F L +L
Sbjct: 143 NGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L ++HN ++ + L L L+ NHI T
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Score = 156 bits (397), Expect = 2e-45
Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLH 171
L + ++ L + + + L +L+L N L+ S +L+ L+L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSP-ALKSLNHLLILNLNHNKISALHSNAFQ 230
N + + + L LD ++L + SL +L+ L+++H + F
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 231 GLDTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
GL +LE+L + N PD F L + L L+L +L ++ T+ + L +L+ L +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP-LLNSLELDGNHIH 343
HN ++ ++ L++L L + N + T + H P L L L N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 153 bits (389), Expect = 3e-44
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 10/218 (4%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ LT VP S + +LEL N++ + G F+ LT+L LS N L+
Sbjct: 10 TEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 200 --VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGL 256
S + L L+L+ N + + S+ F GL+ LE L + L + E F L
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAH 315
+ L L++ + L +L L++ N F L NL L L+
Sbjct: 126 -RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
QL + P F L L L + N+ ++D + L
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Score = 115 bits (290), Expect = 7e-30
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 4/178 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
YL L N + ++ F GL+ + HL +S+L + E S+ + L L++
Sbjct: 82 YLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 153 VPQTSLSKLENLRKLELLHNR-IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ L +L L++ N F + LT LDLSQ L + A SL+
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
L +LN++HN +L + ++ L++L++L N + + + L LNL N
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 31.5 bits (72), Expect = 0.31
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + L ++P + + LEL+ N + ++ F L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKL 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 158 bits (402), Expect = 3e-45
Identities = 51/299 (17%), Positives = 114/299 (38%), Gaps = 29/299 (9%)
Query: 77 IQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD------IRHLTIHNSSLAVVEE 130
++ K + + ++ T ++FG + + +T NS++ +
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQ 189
+ L S ++++ LNL ++ + + + ++KL + N I + F+ LT
Sbjct: 63 ALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
L L +N L+ +P + L L++++N + + + FQ +L+ L + N+L+ ++
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181
Query: 250 PDSFKGLEK---------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
L ++ L+ N + V L L+L HN +
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNL 238
Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ L + L++N+L I F + L L + N + + +
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294
Score = 151 bits (384), Expect = 1e-42
Identities = 50/276 (18%), Positives = 108/276 (39%), Gaps = 26/276 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
+ +++ + KL + + L +++ + ++ + + +++L +G N +
Sbjct: 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRY 107
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+P + L L L N ++ + G F LT L +S N+L + ++ L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 212 LILNLNHNKISALHSNAFQGLDT----------------LEILTIFENKLSLIEPDSFKG 255
L L+ N+++ + + L +E L N ++++
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV- 226
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
+L L L N LT L L +++L +N + I F + L+ L +++
Sbjct: 227 ---ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
N+L + +P L L+L NH+ V+
Sbjct: 282 NRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ 316
Score = 147 bits (373), Expect = 4e-41
Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 27/279 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L + ++ + F I+ L + +++ + ++ L L L N+L+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSS 131
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+P+ L L + +N + IE+ F+ +L L LS N L V + SL H
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Query: 212 LI----------------LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ L+ +HN I+ + L IL + N L+ +
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNNLT--DTAWLLN 246
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L ++L NEL ++ K++ L +L + +NR+ + + + L L L+H
Sbjct: 247 Y-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSH 304
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
N L + L +L LD N I T+ + L+
Sbjct: 305 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK 342
Score = 132 bits (334), Expect = 1e-35
Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 30/268 (11%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L + N + L +F + + L + + L+ + + KL L++ N L R
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLER 155
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-----------------KALTQLDLSQN 195
+ + +L+ L+L NR+ ++ A+ +LD S N
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215
Query: 196 SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
S+ VV P L L L HN ++ L + + N+L I F
Sbjct: 216 SINVVRGPVNVELTIL---KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
+ ++L+RL + N L + + L+ L+L HN + +E L++L L H
Sbjct: 271 M-QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDH 327
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIH 343
N + T+ L L L N
Sbjct: 328 NSIVTLKLSTHHTLKNLT---LSHNDWD 352
Score = 129 bits (326), Expect = 2e-34
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 23/225 (10%)
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG------KALTQLDLSQNSLAVVPSPAL 205
R P+ I + + + G + +++ +P+ L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
S + +LNLN +I + + AF T++ L + N + + P F+ + L L L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVL 124
Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
N+L+ +P+ L L + +N + IE+ F+ +L +L L+ N+L + +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Query: 326 FAHLPLLN----------------SLELDGNHIHTVDPAAFSGLE 354
L N L+ N I+ V L
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229
Score = 118 bits (299), Expect = 2e-30
Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 30/267 (11%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N+L L IF + L++ N++L +E+ + + L+ L L N LT
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTH 179
Query: 153 VPQ----------------TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS 196
V ++L+ + +L+ HN I ++ LT L L N+
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNN 237
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L + L + L+ ++L++N++ + + F + LE L I N+L + + +
Sbjct: 238 L--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
LK L+L N L V + + + + L L L HN I ++ H L +L L+HN
Sbjct: 295 -PTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 349
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIH 343
R + +D H
Sbjct: 350 DWDCNSLRAL--FRNVARPAVDDADQH 374
Score = 68.5 bits (168), Expect = 5e-13
Identities = 13/96 (13%), Positives = 31/96 (32%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
+++ L N + + ++ + + + ++ L L Q+
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
I FA+ + L + N I + P F +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 158 bits (401), Expect = 1e-43
Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 10/293 (3%)
Query: 70 EFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVV 128
F D + + + + + L+ + ++ F ++ L + + L+ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 129 EESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KA 186
+ LK+L L N+ + Q S S +L L + N L + G E +
Sbjct: 294 PSGLVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 187 LTQLDLSQNSLAVVP--SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
L +LDLS + + + L++L+HL LNL++N+ +L + AF+ LE+L + +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA---LIEEGD 301
L + + S LK LNL + L + L L+ L L N + +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ L L+ LVL+ L +I F L ++N ++L N + + A S L+
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Score = 147 bits (372), Expect = 1e-39
Identities = 59/266 (22%), Positives = 100/266 (37%), Gaps = 8/266 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L+ N LP + F L ++ L + + + E + S +L L L N L
Sbjct: 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIF 95
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ +T+LS + L+ L + I+ I+ K L L L N ++ + P L
Sbjct: 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTI--FENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
+L+ +N I L L L++ N ++ IEP +F + N
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLRTIPPRVFA 327
L S +++L I FEGL +++S+ L + I F
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275
Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGL 353
L L+L H+ + P+ GL
Sbjct: 276 CFSGLQELDLTATHLSEL-PSGLVGL 300
Score = 143 bits (362), Expect = 3e-38
Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 11/268 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL-TR 152
L L +L +L + ++ L + + + + S S+ L L++ GN
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE 340
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLN 209
+ L LENLR+L+L H+ I + + + + L+ L +LS N + + A K
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 210 HLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
L +L+L ++ + + FQ L L++L + + L + F GL L+ LNL GN
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGN 459
Query: 269 ELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
+ + L+ L +LE+L ++ I++ F L ++ + L+HN+L +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 326 FAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+HL + L L NHI + P+ L
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLPIL 546
Score = 138 bits (349), Expect = 2e-36
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 10/258 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N L + HL+I ++ + + + L+ L+L +++
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
Query: 153 VPQT--SLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-ALKSL 208
L L +L+ L L +N ++ F+ L LDL+ L V + ++L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS---LIEPDSFKGLEKKLKRLNL 265
+ L +LNL+H+ + F GL L+ L + N + + +S + L +L+ L L
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVL 483
Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
+L+ + Q + + L+ + ++L HNR+ L + L LA N + I P +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 326 FAHLPLLNSLELDGNHIH 343
L ++ L N +
Sbjct: 543 LPILSQQRTINLRQNPLD 560
Score = 136 bits (345), Expect = 5e-36
Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 31/250 (12%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
++ + L N L + T+ S+L NL L+L +I I E F+ L L L
Sbjct: 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
+ N L + AL L L IS++ TLE L + N +S I+
Sbjct: 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL----------------------- 289
+KLK L+ N + + + +S L+ L L
Sbjct: 149 GFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207
Query: 290 ----LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIH 343
N + + + + +L I P VF L ++ S+ L ++
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 344 TVDPAAFSGL 353
+ F
Sbjct: 268 NISSNTFHCF 277
Score = 122 bits (309), Expect = 5e-31
Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
+ L +P S L + N + + + F L L L + ++ I
Sbjct: 17 YNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
D+F+ +L L L N L + +T+LS + L+ L + I+ I+ L+
Sbjct: 74 EDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
SL L N + +I L L+ N IH + S L+
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 157 bits (400), Expect = 3e-43
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 11/269 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L HN L +L F + L + ++++ +E + LK LNL NEL++
Sbjct: 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQ 87
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ + + NL +L L+ N I I+ F K L LDLS N L+ L +L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 212 LILNLNHNKISALHSNAFQ--GLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L++NKI AL S +L+ L + N++ P F + +L L L +
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQ 206
Query: 270 LTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLH--NLDSLVLAHNQLRTIPPR 324
L L + L +++++ F GL NL L L++N L +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 325 VFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
FA LP L L+ N+I + + GL
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Score = 154 bits (391), Expect = 5e-42
Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 18/278 (6%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L+HN L +L+ F + L + ++S+ ++ + K L L+L N L+
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSS 135
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPALKSLN 209
+ +LENL++L L +N+I ++ + + +L +L+LS N + ++
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 210 HLLILNLNHNKISALHSNAFQ---GLDTLEILTIFENKLSLIEPDSFKGLEK-KLKRLNL 265
L L LN+ ++ + ++ L++ ++LS +F GL+ L L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN--------- 316
N L V S + L L L +N I + GL N+ L L +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L I F L L L ++ N I + F+GL
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Score = 146 bits (370), Expect = 4e-39
Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 17/277 (6%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIG---KKLKRLNLGGNE 149
+L + N++P + +F GL ++++L++ NS ++ ++ + + L LNL N+
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 150 LTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
++++ + S L +L L+L N I + ++ G + + ++ LS N + +
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 208 LNHLLILNLNHNKISALHS--NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
+ L L L + + S + FQ L L IL + N ++ I D +GL +KL+ L+L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDL 511
Query: 266 GGNELTRV--------PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
N L R+ P L L +L L L N I F+ L L + L N
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L T+P VF + L SL L N I +V+ F
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Score = 145 bits (367), Expect = 1e-38
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 7/227 (3%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
+ + LNL N+L R+P + ++ L L++ N I+ +E + L L+L
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
N L+ + +L L+L N I + +N F L L + N LS + +
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLEN--LRKLELLHNRIALIEEGDFEGLHNLDS 310
L + L+ L L N++ + L N L+KLEL N+I G F + L
Sbjct: 141 QVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 311 LVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLE 354
L L + QL + +L L + + T F GL+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Score = 137 bits (346), Expect = 7e-36
Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 25/283 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD---IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
L L +N + L ++ L + ++ + +I +L L L +L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQL 207
Query: 151 TRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPA 204
L + L +++++ F G LT LDLS N+L VV + +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILT---------IFENKLSLIEPDSFKG 255
L L L +N I L S++ GL + L I L I+ SF+
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGLHN--LDSL 311
L K L+ LN+ N++ + + L NL+ L L ++ +L + F L + L L
Sbjct: 328 L-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAAFSGL 353
L N++ I F+ L L L+L N I + + GL
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429
Score = 131 bits (331), Expect = 7e-34
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 29/216 (13%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
+ + +LT+VP + + T L+L+ N L
Sbjct: 6 HEVADCSHLKLTQVPDDLPTNI--------------------------TVLNLTHNQLRR 39
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+P+ + L L++ N IS L Q L L++L + N+LS + +F
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TN 98
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L+L N + ++ K +NL L+L HN ++ + G L NL L+L++N+++
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Query: 320 TIPPRVFAHLPL--LNSLELDGNHIHTVDPAAFSGL 353
+ L LEL N I P F +
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194
Score = 101 bits (254), Expect = 8e-24
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIG-KKLKRLNLGGNELT 151
+ L +N +LT F + ++ L + +L V+ S + L L+L N +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNSLAVVPS 202
+ L LE L L+L HN +A + + G L L+L N +P
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
K L L I++L N ++ L ++ F +L+ L + +N ++ +E F + L
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 263 LNLGGNELT 271
L++ N
Sbjct: 614 LDMRFNPFD 622
Score = 101 bits (253), Expect = 1e-23
Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 25/270 (9%)
Query: 94 YLKLRHNNL-PKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
L L N + +LTG + GL+ I + + + + +S + + L+RL L L
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV-PSLQRLMLRRVALK 467
Query: 152 RVPQ--TSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---- 204
V + L NL L+L +N IA I + EG + L LDL N+LA + A
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 205 ----LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
LK L+HL ILNL N + F+ L L+I+ + N L+ + F L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSL 586
Query: 261 KRLNLGGNELTRVPQTSLSK-LENLRKLELLHNRIALIEEGDFEGLHNL-DSLVLAHNQL 318
K LNL N +T V + NL +L++ N + E + + + H +
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF----DCTCESIAWFVNWINETHTNI 642
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
+ + P G + D +
Sbjct: 643 PELSSHYLCNTP----PHYHGFPVRLFDTS 668
Score = 88.5 bits (220), Expect = 2e-19
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
+ E+ KL+ + D + LNL N+L R+P + ++ L L++ N
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNI----TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
I+ +E + L L L L HN+L + + FA L L L N I + F
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 148 bits (375), Expect = 1e-42
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 8/207 (3%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
K L+L N L + S L+ L+L I IE+G ++ L+ L L+ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGLE 257
+ A L+ L L +++L + L TL+ L + N + S P+ F L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNLDSLVL 313
L+ L+L N++ + T L L + L+L N + I+ G F+ + L L L
Sbjct: 150 N-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 207
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGN 340
NQL+++P +F L L + L N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 138 bits (351), Expect = 5e-39
Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 11/213 (5%)
Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL 205
++P +L + + L+L N + + F L LDLS+ + + A
Sbjct: 16 ELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
+SL+HL L L N I +L AF GL +L+ L E L+ +E L K LK LN+
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNV 131
Query: 266 GGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLD----SLVLAHNQLRT 320
N + S L NL L+L N+I I D LH + SL L+ N +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
I P F + L L LD N + +V F L
Sbjct: 192 IQPGAFKEIR-LKELALDTNQLKSVPDGIFDRL 223
Score = 134 bits (339), Expect = 3e-37
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
LDLS N L + S + S L +L+L+ +I + A+Q L L L + N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGL 305
+ +F GL L++L L + + L+ L++L + HN I + F L
Sbjct: 90 SLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLL----NSLELDGNHIHTVDPAAFSGLE 354
NL+ L L+ N++++I L + SL+L N ++ + P AF +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 116 bits (294), Expect = 1e-30
Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N L L + FF +++ L + + +E+ + S+ L L L GN +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQS 90
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-ALKSLNH 210
+ + S L +L+KL + +A +E K L +L+++ N + P +L +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEI----LTIFENKLSLIEPDSFKGLEKKLKRLNLG 266
L L+L+ NKI +++ + L + + L + N ++ I+P +FK + +LK L L
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALD 208
Query: 267 GNELTRVPQTSLSKLENLRKLELLHN 292
N+L VP +L +L+K+ L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 151 bits (383), Expect = 3e-41
Identities = 51/302 (16%), Positives = 114/302 (37%), Gaps = 29/302 (9%)
Query: 74 NQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD------IRHLTIHNSSLAV 127
++ K + + ++ T ++FG + + +T NS++
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65
Query: 128 VEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KA 186
+ + L S ++++ LNL ++ + + + ++KL + N I + F+
Sbjct: 66 LPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
LT L L +N L+ +P + L L++++N + + + FQ +L+ L + N+L+
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 247 LIEPDSFKGLEK---------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
++ L ++ L+ N + V L L+L H
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQH 241
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
N + + L + L++N+L I F + L L + N + +
Sbjct: 242 NNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298
Query: 352 GL 353
+
Sbjct: 299 PI 300
Score = 147 bits (373), Expect = 7e-40
Identities = 50/276 (18%), Positives = 108/276 (39%), Gaps = 26/276 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
+ +++ + KL + + L +++ + ++ + + +++L +G N +
Sbjct: 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRY 113
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+P + L L L N ++ + G F LT L +S N+L + ++ L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 212 LILNLNHNKISALHSNAFQGLDT----------------LEILTIFENKLSLIEPDSFKG 255
L L+ N+++ + + L +E L N ++++
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV- 232
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
+L L L N LT L L +++L +N + I F + L+ L +++
Sbjct: 233 ---ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
N+L + +P L L+L NH+ V+
Sbjct: 288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ 322
Score = 142 bits (360), Expect = 4e-38
Identities = 58/279 (20%), Positives = 109/279 (39%), Gaps = 27/279 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L + ++ + F I+ L + +++ + ++ L L L N+L+
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSS 137
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+P+ L L + +N + IE+ F+ +L L LS N L V + SL H
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197
Query: 212 LI----------------LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ L+ +HN I+ + L L++ +L +
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL-----QHNNLTDTAWLLN 252
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L ++L NEL ++ K++ L +L + +NR+ + + + L L L+H
Sbjct: 253 Y-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSH 310
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
N L + L +L LD N I T+ + L+
Sbjct: 311 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK 348
Score = 130 bits (327), Expect = 1e-33
Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 23/229 (10%)
Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG------KALTQLDLSQNSLAVVP 201
N R P+ I + + + G + +++ +P
Sbjct: 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67
Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
+ L S + +LNLN +I + + AF T++ L + N + + P F+ + L
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLT 126
Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L L N+L+ +P+ L L + +N + IE+ F+ +L +L L+ N+L +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 322 PPRVFAHL----------------PLLNSLELDGNHIHTVDPAAFSGLE 354
+ L + L+ N I+ V L
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235
Score = 107 bits (268), Expect = 8e-26
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 6/167 (3%)
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQG-----LDTLEILTIFENKLS 246
N P N I + + G L+ +I+T + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
+ ++++ LNL ++ + + + ++KL + N I + F+ +
Sbjct: 65 KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L LVL N L ++P +F + P L +L + N++ ++ F
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Score = 93.1 bits (231), Expect = 5e-21
Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 4/143 (2%)
Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE----KKLKRLNLGGNEL 270
+N + ++ + + D + G E K + + +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
++P L + L L +I I+ F H + L + N +R +PP VF ++P
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 331 LLNSLELDGNHIHTVDPAAFSGL 353
LL L L+ N + ++ F
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNT 146
Score = 76.5 bits (188), Expect = 2e-15
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 12/177 (6%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L HN++ + G + L L + +++L + + L + L ++L NEL ++
Sbjct: 215 ELDASHNSINVVRGPVNVEL--TILKLQHNNL--TDTAWLLNY-PGLVEVDLSYNELEKI 269
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
K++ L +L + +NR+ + L LDLS N L V + L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLEN 328
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L L+HN I L + L+ LT+ N +S + L + + R + +
Sbjct: 329 LYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD---CNSLRALFRNVARPAVDDADQ 379
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 138 bits (349), Expect = 9e-39
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 5/203 (2%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
++ +LT +P + + +KL+L N+++ + F L L L+ N L
Sbjct: 17 NKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+P+ K L +L L + NK+ AL F L L L + N+L + P F L
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL- 132
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
KL L+LG NEL +P+ KL +L++L L +N++ + EG F+ L L +L L +NQ
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 318 LRTIPPRVFAHLPLLNSLELDGN 340
L+ +P F L L L+L N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 128 bits (324), Expect = 4e-35
Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
+LDL N L+ +PS A L L +L LN NK+ L + F+ L LE L + +NKL
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
+ F L L L L N+L +P L L L L +N + + +G F+ L
Sbjct: 99 ALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+L L L +NQL+ +P F L L +L+LD N + V AF LE
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Score = 122 bits (307), Expect = 1e-32
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 191 DLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI 248
D S L +PS PA L+L NK+S+L S AF L L +L + +NKL +
Sbjct: 22 DCSSKKLTAIPSNIPA-----DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
FK L K L+ L + N+L +P +L NL +L L N++ + F+ L L
Sbjct: 77 PAGIFKEL-KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L +N+L+++P VF L L L L N + V AF L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Score = 46.9 bits (112), Expect = 4e-06
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ L L N+L ++P + F L L L L+ N + T+ F L+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 138 bits (351), Expect = 1e-38
Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 15/258 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
K+ ++L + + +++ L + + L+ + + L+ KL+ LNL N L
Sbjct: 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYE 72
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
L L LR L+L +N + + G ++ L + N+++ V + ++
Sbjct: 73 TL--DLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI- 125
Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
L +NKI+ L ++ L + N++ + L+ LNL N +
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
V L+ L+L N++A + +F+ + + L +N+L I L
Sbjct: 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNL 239
Query: 333 NSLELDGNHIHTVDPAAF 350
+L GN H F
Sbjct: 240 EHFDLRGNGFHCGTLRDF 257
Score = 130 bits (328), Expect = 2e-35
Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 16/218 (7%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ K + + L + + N+++L+L N ++ I D L L+LS N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L L+SL+ L L+LN+N + L ++E L N +S + +G
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQG- 121
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-LHNLDSLVLAH 315
K + L N++T + ++ L+L N I + + L+ L L +
Sbjct: 122 ---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
N + + +V L +L+L N + + F
Sbjct: 179 NFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA 213
Score = 104 bits (261), Expect = 9e-26
Identities = 50/251 (19%), Positives = 96/251 (38%), Gaps = 26/251 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L L N L + +R L ++N+ + L G ++ L+ N ++RV
Sbjct: 62 LLNLSSNVLYETLDLESLS-TLRTLDLNNNYV-----QELLV-GPSIETLHAANNNISRV 114
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL-KSLNHL 211
S+ + + + L +N+I ++ + D + LDL N + V L S + L
Sbjct: 115 S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
LNL +N I + L+ L + NKL+ + F+ + ++L N+L
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA-AGVTWISLRNNKLV 227
Query: 272 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
+ + +L +NL +L N L + +++T+ + L
Sbjct: 228 LIEK-ALRFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 332 LNSLELDGNHI 342
N E +
Sbjct: 278 QNEEECTVPTL 288
Score = 82.3 bits (204), Expect = 6e-18
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
Q + +I + ++ L + +K L+L GN L+++ L+ L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
L N + D E L L +L L +N ++ + P + +L N+I V +
Sbjct: 65 LSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117
Query: 349 AFSGLE 354
G +
Sbjct: 118 RGQGKK 123
Score = 56.5 bits (137), Expect = 3e-09
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 7/147 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
YL L+ N + + + HL + + + V+ + + KLK L+L N+L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLA 204
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
+ + + L +N++ LIE+ + L DL N +
Sbjct: 205 FMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQ 262
Query: 212 LILNLNHNKISALHSNAFQGLDTLEIL 238
+ + + L + +
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLG 289
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 139 bits (353), Expect = 1e-38
Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 35/254 (13%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
S + + +K L+L N +T + + L + NL+ L L N I IEE F +L LDL
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFEN-KLSLIEP 250
S N L+ + S K L+ L LNL N L ++ F L L+IL + + I+
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
F GL L+ L + ++L SL ++N+ L L + L+ E + +++
Sbjct: 168 KDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 311 LVLAHNQLRTIP-------------------------------PRVFAHLPLLNSLELDG 339
L L L T ++ + L LE
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 340 NHIHTVDPAAFSGL 353
N + +V F L
Sbjct: 287 NQLKSVPDGIFDRL 300
Score = 139 bits (351), Expect = 2e-38
Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 15/262 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L +N + ++ +++ L + ++ + +EE S SS+G L+ L+L N L+
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLDLSYNYLSN 114
Query: 153 VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQN-SLAVVPSPALKSLN 209
+ + L +L L LL N L E F L L + + + L
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L ++ + + + + + + + L + + L+ ++ L L +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTD 233
Query: 270 LTRVPQTSLS--------KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L + LS K R +++ + + + + L L + NQL+++
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSV 292
Query: 322 PPRVFAHLPLLNSLELDGNHIH 343
P +F L L + L N
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314
Score = 137 bits (346), Expect = 1e-37
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)
Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
L +P ++ L+L +NRI I D + L L L+ N + +
Sbjct: 37 KGSSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
+ SL L L+L++N +S L S+ F+ L +L L + N + S KL+
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 263 LNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L +G + T++ + + L L +LE+ + + E + + N+ L+L Q +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ LEL + T + S E
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 139 bits (353), Expect = 7e-38
Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 30/289 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSL--AVVEESSLSSIGKKLKRLNLGGNEL 150
LKL +N +L F GL ++ LT+ +L AV+ + + L+ L L N +
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNI 141
Query: 151 TRV-PQTSLSKLENLRKLELLHNRIALIEEGDF---EGKALTQLDLSQNSLAVVPSPALK 206
++ P + + L+L N++ I E D +GK T L LS +L + L
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 207 S--------LNHLLILNLNHNKISALHSNAFQGLDTLEIL-------------TIFENKL 245
+ L+L+ N + F + +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 246 SLIEPDSFKGLEK-KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
+ +FKGLE +K +L +++ + ++ S +L +L L N I I++ F G
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L +L L L+ N L +I R+F +L L L+L NHI + +F GL
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Score = 133 bits (336), Expect = 2e-35
Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 28/274 (10%)
Query: 94 YLKLRHNNLPKLT-GFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKK-LKRLNLGGNEL 150
L LR NN+ K+ F + L + + + + E L + K L L L
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192
Query: 151 TRVPQTSLS--------KLENLRKLELLHNRIALIEEGDFEGK------ALTQLDLSQNS 196
+ + L K ++ L+L N F L S N
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 197 LAVVPSPALKSL----------NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
+ K + + +L+ +KI AL + F LE LT+ +N+++
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
I+ ++F GL L +LNL N L + L+ L L+L +N I + + F GL
Sbjct: 313 KIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
NL L L NQL+++P +F L L + L N
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 128 bits (324), Expect = 1e-33
Identities = 55/290 (18%), Positives = 107/290 (36%), Gaps = 31/290 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
Y+ L N++ +L F L D++ L + + +V ++ L L L N+ +
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 153 VPQTSLSKLENLRKLELLHNRI--ALIEEGDFEG-KALTQLDLSQNSLA-VVPSPALKSL 208
+ + + L NL L L + A++ F+ +L L L N++ + P+ ++
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLE----------ILTIFENKLSLIEPDSFKGLEK 258
+L+L NK+ ++ + + E L + +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-T 212
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELL-------------HNRIALIEEGDFEGL 305
+ L+L GN K++ L H + F+GL
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 306 H--NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + L+ +++ + VF+H L L L N I+ +D AF GL
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Score = 119 bits (299), Expect = 3e-30
Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 27/243 (11%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KALTQLDLSQNSL 197
+ ++L N + + +TS S+L++L+ L++ L I F G +L L L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 198 AVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ + A L +L +L L + + L N F+ L +LE+L + +N + I+P SF
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL----------HNRIALIEEGDFEGL 305
++ L+L N++ + + L + L + + G+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-------------LDGNHIHTVDPAAFSG 352
++ +L L+ N + + F ++ + D F G
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 353 LEA 355
LEA
Sbjct: 272 LEA 274
Score = 116 bits (293), Expect = 2e-29
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-A 204
L +VP+ ++ ++L N IA + E F + L L + Q + +V
Sbjct: 19 NRGLHQVPELP----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74
Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKKLKR 262
+ L+ L+IL L++N+ L + AF GL LE+LT+ + L +++ + FK L L+
Sbjct: 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEM 133
Query: 263 LNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLR 319
L L N + ++ P + + L+L N++ I E D + L L+ L+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 320 TIPPR--------VFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + +L+L GN F
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235
Score = 108 bits (271), Expect = 2e-26
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 188 TQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
L VP PA H+ ++L+ N I+ L+ +F L L+ L + +
Sbjct: 13 YNAICINRGLHQVPELPA-----HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67
Query: 247 L-IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--ALIEEGDFE 303
L I ++F+GL L L L N+ ++ + + L NL L L + A++ F+
Sbjct: 68 LVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126
Query: 304 GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356
L +L+ LVL N ++ I P F ++ + L+L N + ++ + K
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Score = 101 bits (254), Expect = 3e-24
Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 24/237 (10%)
Query: 33 LLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLII 92
L + L + P S + NG I T S
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
H N F F GL+ + +L +++
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKT----------------------CDLSKSKIFA 289
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ ++ S +L +L L N I I++ F G L +L+LSQN L + S ++L+ L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+L+L++N I AL +F GL L+ L + N+L + F L L+++ L N
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 405
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 140 bits (356), Expect = 2e-37
Identities = 59/265 (22%), Positives = 95/265 (35%), Gaps = 14/265 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ L ++ L + L+I L L LK L L N+ +
Sbjct: 289 AMSLAGVSIKYLEDVPKH-FKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSIS 343
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPALKSLNH 210
L +L L+L N ++ + +L LDLS N ++ + L
Sbjct: 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEE 400
Query: 211 LLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L+ H+ + + +AF L+ L L I + F GL L L + GN
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNS 459
Query: 270 LTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
+ NL L+L ++ I G F+ LH L L ++HN L + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
L L++L+ N I T
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFP 544
Score = 132 bits (334), Expect = 2e-34
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 19/274 (6%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
+ L N L L + F +++ L + + +E+ + + L L L GN +
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQS 94
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA-LKSLNH 210
S S L +L L + ++A +E L +L+++ N + PA +L +
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 211 LLILNLNHNKISALHSNAFQGL----DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLG 266
L+ ++L++N I + N Q L L + N + I+ +F+G+ KL L L
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLR 212
Query: 267 GNEL-TRVPQTSLSKLENLRKLELLHNR------IALIEEGDFEGLHNL--DSLVLAHNQ 317
GN + + +T L L L L+ + + E EGL ++ D L +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+ F L ++++ L G I ++
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306
Score = 132 bits (334), Expect = 2e-34
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 8/253 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L + L + L LT N ++ +L S L L+L N L+
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLT-MNKGSISFKKVALPS----LSYLDLSRNALSFS 365
Query: 154 PQTSLS--KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSP-ALKSLNH 210
S S +LR L+L N ++ + L LD ++L V A SL
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
LL L++++ F GL +L L + N + L L+L +L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
++ L L+ L + HN + ++ + L++L +L + N++ T +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 331 LLNSLELDGNHIH 343
L L N +
Sbjct: 546 SLAFFNLTNNSVA 558
Score = 130 bits (329), Expect = 9e-34
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 12/218 (5%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
+L++VP S + + ++L N + +++ F L LDLS+ + +
Sbjct: 16 YQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
A L+HL L L N I + +F GL +LE L E KL+ +E L LK
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL-ITLK 131
Query: 262 RLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD----SLVLAHN 316
+LN+ N + S L NL ++L +N I I D + L SL ++ N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAAFSGL 353
+ I + F + L L L GN + + L
Sbjct: 192 PIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNL 228
Score = 125 bits (316), Expect = 6e-32
Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 13/232 (5%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
I K ++L N L + S S L+ L+L I IE+ + G L+ L L
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
+ N + + L L L K+++L S L TL+ L + N + + +
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNL 308
+ L ++L N + + L L L++ N I I++ F+G+ L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL 206
Query: 309 DSLVLAHNQLRT-IPPRVFAHLPLLNSLEL------DGNHIHTVDPAAFSGL 353
L L N + I +L L+ L D ++ +P+ GL
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Score = 120 bits (302), Expect = 4e-30
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 7/233 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG-KKLKRLNLGGNELTR 152
L L N + + +L + ++L+ S S +G L+ L+L N
Sbjct: 332 SLTLTMNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390
Query: 153 VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ LE L+ L+ H+ + + E F + L LD+S + + L
Sbjct: 391 MSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 211 LLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L + N SN F L L + + +L I F L +L+ LN+ N
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNN 508
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
L + + ++L +L L+ NRI + +L L +N + I
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561
Score = 118 bits (298), Expect = 1e-29
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 22/274 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L L F L ++ L + ++ + + + S L ++L N +
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167
Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSL-AVVPSPALKS 207
+ L L L++ N I I++ F+G L +L L N + + L++
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227
Query: 208 LNHLLILNL------NHNKISALHSNAFQGLDTLEILTIF--ENKLSLIEPDSFKGLEKK 259
L L + L + + + +GL + I + F L
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL-AN 286
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
+ ++L G + + + K + L ++ ++ L L SL L N+
Sbjct: 287 VSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGS 341
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
LP L+ L+L N + ++S L
Sbjct: 342 ISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373
Score = 115 bits (289), Expect = 2e-28
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
L+ VP S + ++L+ N + L S +F L+ L + ++
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKN---IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
IE ++ GL L L L GN + S S L +L L + ++A +E L
Sbjct: 71 IEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 308 LDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L +AHN + + P F++L L ++L N+I T+ L
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Score = 97.8 bits (244), Expect = 1e-22
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
+P ++ + ++ K+S + + + + + + N L +++ SF +L
Sbjct: 4 LNPCIEVVPNI-TYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNF-SEL 58
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
+ L+L E+ + + L +L L L N I G F GL +L++LV +L +
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
+ L L L + N IH+ PA FS L
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 136 bits (345), Expect = 2e-37
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 9/216 (4%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN-SLAVV 200
+++T +P N +L + ++ +I++G F G L ++++SQN L V+
Sbjct: 14 FLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 201 PSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+ +L L + + N + ++ AFQ L L+ L I + + +
Sbjct: 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQ 129
Query: 260 LKRLNLGGN-ELTRVPQTSLSKL-ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L++ N + + + S L L L N I I F G + + +N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L +P VF L++ IH++ L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225
Score = 136 bits (343), Expect = 3e-37
Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 4/211 (1%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLD 191
S + + L +L + + + S +L K+E+ N + +IE F L ++
Sbjct: 26 SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 192 LSQ-NSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN-KLSLIE 249
+ + N+L + A ++L +L L +++ I L +L I +N + IE
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
+SF GL + L L N + + ++ + + +N + + F G
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L ++ ++ ++P +L L +
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Score = 118 bits (296), Expect = 1e-30
Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 34/252 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE-LTR 152
L+ L + F G L+++ + N+ L
Sbjct: 34 ELRFVLTKLRVIQKGAFSGF------------------------GDLEKIEISQNDVLEV 69
Query: 153 VPQTSLSKLENLRKLELLH-NRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ S L L ++ + N + I F+ L L +S + +P
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 211 LLILNLNHN-KISALHSNAFQGL-DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
++L++ N I + N+F GL IL + +N + I +F G + + N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNN 188
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
L +P L++ RI + E L L + L+ +P
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEK 244
Query: 329 LPLLNSLELDGN 340
L L L
Sbjct: 245 LVALMEASLTYP 256
Score = 112 bits (283), Expect = 1e-28
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 8/171 (4%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK-LS 246
++ + +PS ++ L K+ + AF G LE + I +N L
Sbjct: 12 RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 247 LIEPDSFKGLEKKLKRLNL-GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+IE D F L KL + + N L + + L NL+ L + + I + +
Sbjct: 69 VIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 306 HNLDSLVLAHN-QLRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLE 354
L + N + TI F L L L+ N I + +AF+G +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178
Score = 75.6 bits (186), Expect = 2e-15
Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 11/219 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
YL + + + L L I N ++ +E +S + + L L N +
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ ++ + + +N + + F G LD+S+ + +PS L++L
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L + + K L + + L L ++ +F +++ L+ N+
Sbjct: 228 LRARSTYNLK--KLPT--LEKLVALMEASLTYP----SHCCAFANWRRQISELHPICNKS 279
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
+ ++ L + + G D
Sbjct: 280 ILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFD 318
Score = 31.7 bits (72), Expect = 0.35
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + +++ IP + + L + + AFSG
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGF 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 134 bits (340), Expect = 3e-37
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 9/202 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+N LT +P + L L N + LTQL+L + L
Sbjct: 12 HLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ +L L L+L+HN++ +L Q L L +L + N+L+ + + +GL
Sbjct: 69 KLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-G 124
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L+ L L GNEL +P L+ L KL L +N + + G GL NLD+L+L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 319 RTIPPRVFAHLPLLNSLELDGN 340
TIP F LL L GN
Sbjct: 185 YTIPKGFFG-SHLLPFAFLHGN 205
Score = 122 bits (307), Expect = 2e-32
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
T L LS+N L L L LNL+ +++ L L L L + N+L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ 90
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
+ P + L L L++ N LT +P +L L L++L L N + + G
Sbjct: 91 SL-PLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
L+ L LA+N L +P + L L++L L N ++T+ F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 122 bits (307), Expect = 2e-32
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
+++ + +L +P K IL+L+ N + L L + +L+
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
++ L L L+L N+L +P L L L++ NR+ + G GL
Sbjct: 69 KLQV--DGTL-PVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L L N+L+T+PP + P L L L N++ + +GL
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Score = 72.4 bits (178), Expect = 1e-14
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 23/172 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE-----------------SSLSS 135
L L N L + + L + + L ++ SL
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 136 IGK---KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLD 191
+G+ L L++ N LT +P +L L L++L L N + + G L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
L+ N+L +P+ L L +L L L N + + F G L + N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 30.8 bits (70), Expect = 0.63
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ + + + L +PP + L L N ++T A
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTR 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 139 bits (352), Expect = 1e-36
Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 26/286 (9%)
Query: 92 IFYLKLRHNNLPKLTGFIFFGLD---IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGN 148
I +N+ F GL +RHL + + + + ++ K LK LNL N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYN 300
Query: 149 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
++ ++ + L+NL+ L L +N + + +F G + +DL +N +A++ K
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 208 LNHLLILNLNHNKISALH-----------SNAFQGLDTL----EILTIFENKLSLIEPDS 252
L L L+L N ++ +H N L + ++ + EN+L ++
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIAL-----IEEGDFEGLH 306
F L+ L L N + S+ +L +L L N + L + FEGL
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+L L L HN L ++PP VF+HL L L L+ N + +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526
Score = 135 bits (341), Expect = 3e-35
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 27/278 (9%)
Query: 94 YLKLRHNNL--PKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
L+L L L F L + L + + + + LK ++ N++
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Query: 151 TRVPQTSLSKLE--NLRKLELLHNRIALIEEGDF-------EGKALTQLDLSQN------ 195
V + L L+ L L N + D+ L LD+S N
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220
Query: 196 ------SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD--TLEILTIFENKLSL 247
+++ + +L +H++ + I N F GL ++ L + +
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
+ F+ L K LK LNL N++ ++ + L+NL+ L L +N + + +F GL
Sbjct: 281 LNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
+ + L N + I + F L L +L+L N + T+
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 132 bits (334), Expect = 4e-34
Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 30/283 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSI-GKKLKRLNLGGNEL 150
L L N + L FG ++ + ++ + +V E L + GK L +L N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 151 TRVPQTSLSKLEN------LRKLELLHNRIALIEEGDF-------------EGKALTQLD 191
K N L L++ N + G+F +
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
Query: 192 LSQNSLAVVPSPALKSLNH--LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
+++ L + L+L+H + +L+S F+ L L++L + NK++ I
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
++F GL L+ LNL N L + ++ L + ++L N IA+I++ F+ L L
Sbjct: 307 DEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+L L N L TI +P + + L GN + T+ +
Sbjct: 366 TLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTA 403
Score = 129 bits (325), Expect = 6e-33
Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 28/287 (9%)
Query: 94 YLKLRHNNLP-KLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
L+L P + F L ++R L + +S + + + + L L L L+
Sbjct: 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FHLFELRLYFCGLS 110
Query: 152 R--VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
+ L+ L +L+L N+I +L F +L +D S N + +V L+
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Query: 208 L--NHLLILNLNHNKISALHSNAFQGLD------TLEILTIFENKLSLIEPDSFKG---- 255
L L +L N + + S + LEIL + N ++ +F
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230
Query: 256 -------LEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGLH 306
L + G + + Q + + L ++R L+L H + + FE L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+L L LA+N++ I F L L L L N + + + F GL
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Score = 123 bits (311), Expect = 3e-31
Identities = 57/241 (23%), Positives = 90/241 (37%), Gaps = 26/241 (10%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KALTQLDLSQNS 196
+RL L N + V +S LE L+ LEL L I++ F L LDL +
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 197 LAVVPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENKL-SLIEPDSF 253
+ + A + L HL L L +S L F+ L L L + +N++ SL SF
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGLHN---- 307
L LK ++ N++ V + L L+ L L N + D+ N
Sbjct: 145 GKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203
Query: 308 --LDSLVLAHNQLRTIPPRVFAH------------LPLLNSLELDGNHIHTVDPAAFSGL 353
L+ L ++ N F++ + ++I D F+GL
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263
Query: 354 E 354
Sbjct: 264 A 264
Score = 114 bits (287), Expect = 5e-28
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-I 248
+L VP + LN L L+ N I + +++F L+ L++L + L I
Sbjct: 9 AFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--ALIEEGDFEGLH 306
+ ++F+ L L+ L+LG +++ + + L +L +L L + A++++G F L
Sbjct: 65 DKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 307 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356
L L L+ NQ+R++ F L L S++ N I V L+ K
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Score = 92.2 bits (229), Expect = 2e-20
Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 32/266 (12%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE--------------SSLSSIGK 138
Y+ L+ N++ + F L ++ L + +++L + +L I
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401
Query: 139 KLKRLNLGGNELTRVPQTS-LSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQN 195
++L N L + L ++ +L+ L L NR + +L QL L +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 196 SLAVV-----PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
L + + L+HL +L LNHN +++L F L L L++ N+L+++
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLHNLD 309
+ L+ L++ N+L +L L++ HN+ E F N
Sbjct: 522 NDLPA---NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHT 575
Query: 310 SLVLAHN--QLRTIPPRVFAHLPLLN 333
++ +A + + P F+ + L +
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFS 601
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 136 bits (343), Expect = 7e-36
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 4/217 (1%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+K L+L N++T + L NL+ L L +RI IE F +L LDLS N L+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 199 VVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTI-FENKLSLIEPDSFKGL 256
+ S L+ L LNL N L ++ F L L+ L I S I F GL
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L L + L SL + ++ L L + A + E + L ++ L L
Sbjct: 148 -TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L + + ++ + +F+ L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Score = 133 bits (336), Expect = 6e-35
Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 5/214 (2%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
+ T +P + ++ L+L N+I I GD L L L + + +
Sbjct: 10 CDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
A SL L L+L+ N +S+L S+ F L +L+ L + N + S L+
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 262 RLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L +G + + + + L +L +LE+ + + + + ++ L L ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ L + LEL ++ + E
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220
Score = 123 bits (310), Expect = 2e-31
Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 27/288 (9%)
Query: 82 TTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK--- 138
L L + +L + + L++ + + +L + + + S
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279
Query: 139 -------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQL 190
++RL++ L T S LE ++++ + ++++ L+ + K+L L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 191 DLSQN---SLAVVPSPALKSLNHLLILNLNHNKISAL--HSNAFQGLDTLEILTIFENKL 245
DLS+N + S + L L L+ N + ++ L L L I N
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+ PDS + +K++ LNL + V LE L++ +N + L
Sbjct: 400 HPM-PDSCQWP-EKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNLDSF----SLFL 450
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L ++ N+L+T+P P+L +++ N + +V F L
Sbjct: 451 PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRL 496
Score = 119 bits (299), Expect = 6e-30
Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 24/282 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N + + +++ L + +S + +E + S+ L+ L+L N L+
Sbjct: 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSS 88
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--ALTQLDLS-QNSLAVVPSPALKSLN 209
+ + L +L+ L L+ N + L L + + + + L
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L + + S + + + + LT+ ++ + + L ++ L L
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDTN 207
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV----------------- 312
L R + L E ++ L R +++ + F L L +
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 313 -LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++ + + L + ++ +S L
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309
Score = 118 bits (298), Expect = 9e-30
Identities = 42/278 (15%), Positives = 98/278 (35%), Gaps = 20/278 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG-NELT 151
+L L N+L L+ F L +++L + + + +SL L+ L +G +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ + + L +L +LE+ + + + + + L L + A + L+
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR-------- 262
+ L L ++ + + + + S++ +SF L K L+
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 263 -LNLGGNELTRVPQTSLSKLENLRKLELL--------HNRIALIEEGDFEGLHNLDSLVL 313
+ N L + + L K+E + + + L + + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
++++ +P HL L L+L N + +
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Score = 112 bits (283), Expect = 1e-27
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 186 ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
A D S +PS ++ L+L+ NKI+ + + L++L + +++
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKS---LDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG 304
+ IE D+F L L+ L+L N L+ + + L +L+ L L+ N L F
Sbjct: 63 NTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 305 LHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L NL +L + + I FA L LN LE+ + + +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Score = 90.9 bits (226), Expect = 3e-20
Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 15/206 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNEL 150
+ + ++ + + L + L + + + + + G L+ L L N L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 151 TRVPQTS--LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL 208
+ +T L L+NL L++ N + + + + L+LS + VV + ++L
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
L++++N + + L L+ L I NKL + S L + + N
Sbjct: 434 EV---LDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLF---PVLLVMKISRN 483
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRI 294
+L VP +L +L+K+ L N
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 134 bits (338), Expect = 2e-35
Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 15/258 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
K+ ++L + + +++ L + + L+ + + L+ KL+ LNL N L
Sbjct: 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYE 72
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
L L LR L+L +N + + G ++ L + N+++ V + ++
Sbjct: 73 TL--DLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI- 125
Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
L +NKI+ L ++ L + N++ + L+ LNL N +
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
V L+ L+L N++A + +F+ + + L +N+L I L
Sbjct: 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNL 239
Query: 333 NSLELDGNHIHTVDPAAF 350
+L GN H F
Sbjct: 240 EHFDLRGNGFHCGTLRDF 257
Score = 124 bits (313), Expect = 4e-32
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 16/217 (7%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
+ K + + L + + N+++L+L N ++ I D L L+LS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
L+SL+ L L+LN+N + L ++E L N +S + +G
Sbjct: 71 YET--LDLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQG-- 121
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-LHNLDSLVLAHN 316
K + L N++T + ++ L+L N I + + L+ L L +N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + +V L +L+L N + + F
Sbjct: 180 FIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA 213
Score = 107 bits (268), Expect = 7e-26
Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 10/264 (3%)
Query: 95 LKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ L +N + L +++L + + + V + L++ L+ LNL N + V
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
L+ L+L N++A + +T + L N L ++ AL+ +L
Sbjct: 185 K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
+L N F + T+ + + + + + + G +
Sbjct: 242 FDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEEC-TVPTLGHYGAYCCEDL 299
Query: 274 PQTSLSKLENLRKLELLHNRIALIE----EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
P +L L++ E E E + E + Q RT+ +V
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359
Query: 330 PLLNSLELDGNHIHTVDPAAFSGL 353
+LE +
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAH 383
Score = 95.3 bits (237), Expect = 7e-22
Identities = 34/253 (13%), Positives = 73/253 (28%), Gaps = 12/253 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
YL L+ N + + + HL + + + V+ + + KLK L+L N+L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLA 204
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
+ + + L +N++ LIE+ + L DL N +
Sbjct: 205 FMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQ 262
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK----KLKRLNLGG 267
+ + + L + + + L + L+ G
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+E R+ R+++ L + + + +L L
Sbjct: 323 SETERLE-CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Query: 328 HLPLLNSLELDGN 340
L+
Sbjct: 382 AHAELDGTLQQAV 394
Score = 87.2 bits (216), Expect = 4e-19
Identities = 33/267 (12%), Positives = 83/267 (31%), Gaps = 11/267 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+L L++N + + G + F ++ L + ++ LA + S+ + ++L N+L +
Sbjct: 173 HLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVLI 229
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
+ +L +NL +L N DF K +++ ++ + + +
Sbjct: 230 EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Query: 214 LNLNHNKISALHSNAFQGLDTL-----EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+ L + L L +L+ ++ +E + + + ++
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA--RQREIDALKE 346
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
+ V + + LE + LD + +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLEA 355
PL + + A
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNA 433
Score = 79.9 bits (197), Expect = 1e-16
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
Q + +I + ++ L + +K L+L GN L+++ L+ L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
L N + D E L L +L L +N ++ + P + +L N+I V +
Sbjct: 65 LSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117
Query: 349 AFSGLE 354
G +
Sbjct: 118 RGQGKK 123
Score = 64.5 bits (157), Expect = 1e-11
Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 7/215 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ LR N T FF + R T+ ++ + + + G +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE-CTVPTLGHYGAYCCEDL 299
Query: 154 PQTSLSKLENLRK-----LELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL 208
P +L L++ L + +E ++D + V
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+ L + SN + L+ ++ + + +L R +
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303
E V Q + +R ++ ++ + E +
Sbjct: 420 EEMYVEQQ-SVQNNAIRDWDMYQHKETQLAEENAR 453
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 130 bits (329), Expect = 5e-35
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSN-AFQGLDTLEILTIFENK 244
L S+ L VP P+ + +L+L+HN +S L + L L L + N
Sbjct: 21 NILSCSKQQLPNVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
L+ I ++F + L+ L+L N L + + S L+ L L L +N I +++ FE
Sbjct: 76 LNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 305 LHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLEA 355
+ L L L+ NQ+ P + LP L L+L N + + L A
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 122 bits (307), Expect = 5e-32
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLA 198
L+ +L VPQ SL L+L HN ++ + E L L LS N L
Sbjct: 21 NILSCSKQQLPNVPQ-SLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ S A + +L L+L+ N + L F L LE+L ++ N + +++ ++F+ +
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-A 136
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+L++L L N+++R P + L KL LL L+ N+L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD---------------------LSSNKL 175
Query: 319 RTIPPRVFAHLPLL--NSLELDGNHIH 343
+ +P LP N L L N +
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 121 bits (306), Expect = 8e-32
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 10/224 (4%)
Query: 140 LKRLNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
L+L N L+R+ + + ++L NL L L HN + I F L LDLS N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ L L +L L +N I + NAF+ + L+ L + +N++S + K
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 258 K--KLKRLNLGGNELTRVPQTSLSKLENLRK--LELLHNRIA----LIEEGDFEGLHNLD 309
K KL L+L N+L ++P T L KL K L L +N + L + L
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLS 220
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
S++ L + + ++ L+ + L
Sbjct: 221 SVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTL 264
Score = 84.1 bits (208), Expect = 3e-18
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L L HN+L ++ F + L+ L+L N L +
Sbjct: 68 SLLLSHNHLNFISSEAFVPV------------------------PNLRYLDLSSNHLHTL 103
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---LKSLN 209
+ S L+ L L L +N I +++ FE L +L LSQN ++ P L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTI 240
L++L+L+ NK+ L Q L +
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Score = 66.8 bits (163), Expect = 2e-12
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 34/141 (24%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
YL L N+L L F+F L + L+ L L N + V
Sbjct: 92 YLDLSSNHLHTLDEFLFSDL------------------------QALEVLLLYNNHIVVV 127
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG----KALTQLDLSQNSLAVVPSPALKSLN 209
+ + + L+KL L N+I+ + L LDLS N L +P L+ L
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Query: 210 HLLILNLNHNKISALHSNAFQ 230
+ L LH+N +
Sbjct: 188 AWVKNGLY------LHNNPLE 202
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 125 bits (317), Expect = 2e-34
Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN-RIALIEEGDFEG-KALT 188
+ S+ + L L L +P + S L N+ ++ + + + +E F +T
Sbjct: 24 QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83
Query: 189 QLDLSQN-SLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFEN-KL 245
+++ +L + ALK L L L + + + D IL I +N +
Sbjct: 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEG 304
+ I ++F+GL + L L N T V + + L + L N+ + +I++ F G
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGG 202
Query: 305 LHN-LDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
+++ L ++ + +P + HL L +
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 123 bits (310), Expect = 2e-33
Identities = 38/223 (17%), Positives = 90/223 (40%), Gaps = 12/223 (5%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN-SL 197
+ + ++ R+P S + + L+L+ + I F ++++ +S + +L
Sbjct: 13 EEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 198 AVVPSPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ S + +L+ + + + + + ++ + +A + L L+ L IF L + +
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 257 EKKLKRLNLGGN-ELTRVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
L + N +T +P + L N L+L +N ++ F G LD++ L
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLN 187
Query: 315 HNQ-LRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLEA 355
N+ L I F + + L++ + + L+
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230
Score = 65.8 bits (161), Expect = 1e-12
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIH---NSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
+L + + L + N + + ++ + + L L N
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Query: 151 TRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEG--KALTQLDLSQNSLAVVPSPALKS 207
T V + + L + L N+ + +I++ F G + LD+SQ S+ +PS L+
Sbjct: 169 TSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Query: 208 LNHLLILNL 216
L L+ N
Sbjct: 228 LKELIARNT 236
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 132 bits (333), Expect = 2e-34
Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 14/293 (4%)
Query: 67 ILCEFTDNQKIQH-TMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGL-DIRHLTIHNS 123
+L EF + ++ + L+ L I +L + + +F L ++ ++ +
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 183
++ V++ S + + L L + + P L +L++L N+
Sbjct: 293 TIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEVDL 346
Query: 184 GKALTQLDLSQNSLAV--VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241
L LDLS+N L+ S + L L+L+ N + + SN F GL+ LE L
Sbjct: 347 PS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEG 300
+ L + S + L L++ + L +L L++ N
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 301 DFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
F L NL L L+ QL + P F L L L + N + +V F L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Score = 131 bits (332), Expect = 3e-34
Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 14/252 (5%)
Query: 97 LRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQT 156
L + ++ F + +HL + N L S LKRL N+
Sbjct: 289 LVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNAF-- 341
Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLNHLLI 213
S L +L L+L N ++ T L DLS N + + S L L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEH 400
Query: 214 LNLNHNKISAL-HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
L+ H+ + + + F L L L I + F GL L+ L + GN
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQE 459
Query: 273 -VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
++L NL L+L ++ + F L +L L +A NQL+++P +F L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 332 LNSLELDGNHIH 343
L + L N
Sbjct: 520 LQKIWLHTNPWD 531
Score = 129 bits (325), Expect = 2e-33
Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 15/233 (6%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
++ K L+L N L + S L+ L+L I IE+G ++ L+ L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPD 251
+ N + + A L+ L L +++L + L TL+ L + N + S P+
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHN 307
F L L+ L+L N++ + T L L + L+L N + I+ G F+ +
Sbjct: 144 YFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201
Query: 308 LDSLVLAHNQLR-TIPPRVFAHLPLLNSLEL------DGNHIHTVDPAAFSGL 353
L L L +N + L L L + ++ D +A GL
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Score = 115 bits (289), Expect = 1e-28
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
+ + +P S + L+L+ N + L S +F L++L + ++
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
IE +++ L L L L GN + + + S L +L+KL + +A +E L
Sbjct: 67 IEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 308 LDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L +AHN +++ P F++L L L+L N I ++ L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 105 bits (264), Expect = 3e-25
Identities = 62/296 (20%), Positives = 104/296 (35%), Gaps = 40/296 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L NL L F L ++ L + ++ + + S L+ L+L N++
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV-VPSPALKS 207
+ T L L + L+L N + I+ G F+ L +L L N ++ V ++
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 208 LNHLLILNL------NHNKISALHSNAFQGLDTLEILTIFENKLSLIE---PDSFKGLEK 258
L L + L N + +A +GL L I L D F L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT- 282
Query: 259 KLKRLNLGGNELTRVP-------------------QTSLSKLENLRKLELLHNRIALIEE 299
+ +L + RV Q KL++L++L N+
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-- 340
Query: 300 GDFEGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L +L+ L L+ N L + L L+L N + T+ + F GL
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 395
Score = 102 bits (256), Expect = 4e-24
Identities = 65/293 (22%), Positives = 102/293 (34%), Gaps = 39/293 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N + L F GL ++ L ++LA +E + + K LK LN+ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQS 138
Query: 153 VPQ-TSLSKLENLRKLELLHNRIALIEEGDFEG-----KALTQLDLSQNSLAVVPSPALK 206
S L NL L+L N+I I D LDLS N + + A K
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 207 SLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIF------ENKLSLIEPDSFKGLEK- 258
+ L L L +N S + QGL LE+ + E L + + +GL
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 259 KLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFE-------------- 303
++ L + L + L N+ L+ I +++ +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317
Query: 304 -----GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
L +L L N+ LP L L+L N + + S
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQS 368
Score = 101 bits (253), Expect = 9e-24
Identities = 59/283 (20%), Positives = 100/283 (35%), Gaps = 24/283 (8%)
Query: 86 SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
+ L+ L L N + + F + + LT+ N+ ++ + L+ L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 146 GGNELTRVPQ---TSLSKLENLRKLELLHNRIALIEEGDFEG-------KALTQLDLSQN 195
E S LE L L + R+A ++ + ++ L
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 196 SLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
++ V HL ++N + L L +L+ LT NK S
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLK------LKSLKRLTFTSNKGGNA--FSEV 344
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLS--KLENLRKLELLHNRIALIEEGDFEGLHNLDSLV 312
L L+ L+L N L+ S S +L+ L+L N + + F GL L+ L
Sbjct: 345 DL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402
Query: 313 LAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
H+ L+ + VF L L L++ H F+GL
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 127 bits (321), Expect = 1e-32
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 11/255 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+L+L + + L T N E L S L+ L+L N L+
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFT-SNKGGNAFSEVDLPS----LEFLDLSRNGLSFK 362
Query: 154 PQT--SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA-VVPSPALKSLNH 210
S +L+ L+L N + + + L LD ++L + SL +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS-LIEPDSFKGLEKKLKRLNLGGNE 269
L+ L+++H + F GL +LE+L + N PD F L + L L+L +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQ 481
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
L ++ T+ + L +L+ L + HN ++ ++ L++L L + N + T + H
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 330 P-LLNSLELDGNHIH 343
P L L L N
Sbjct: 542 PSSLAFLNLTQNDFA 556
Score = 125 bits (316), Expect = 4e-32
Identities = 58/266 (21%), Positives = 92/266 (34%), Gaps = 14/266 (5%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L + ++ F + +HL + N L S LKRL N+
Sbjct: 286 SFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNA 340
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLNH 210
S L +L L+L N ++ T L DLS N + + L
Sbjct: 341 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQ 397
Query: 211 LLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L+ H+ + + + F L L L I + F GL L+ L + GN
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNS 456
Query: 270 LTR-VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
++L NL L+L ++ + F L +L L ++HN ++ +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLE 354
L L L+ NHI T
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFP 542
Score = 119 bits (301), Expect = 5e-30
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 13/232 (5%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
++ K L+L N L + S L+ L+L I IE+G ++ L+ L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
+ N + + A L+ L L +++L + L TL+ L + N + +
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNL 308
+ L+ L+L N++ + T L L + L+L N + I+ G F+ + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202
Query: 309 DSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGN------HIHTVDPAAFSGL 353
L L +N + L L L ++ D +A GL
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Score = 106 bits (266), Expect = 2e-25
Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 33/299 (11%)
Query: 86 SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
+ L+ L L N + + F + + LT+ N+ ++ + L+ L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 146 GGNELT---RVPQTSLSKLENLRKLELLHNRIALIEE------GDFEG-KALTQLDLSQN 195
E + + S LE L L + R+A ++ F ++ L
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 196 SL-AVVPSPALKSLNHLLILNLNHNKISALH----------------SNAFQGLDTLEIL 238
++ V HL ++N + L + + L +LE L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 239 TIFENKLSLIE--PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA- 295
+ N LS S G LK L+L N + + + LE L L+ H+ +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ 410
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGL 353
+ E F L NL L ++H R +F L L L++ GN P F+ L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Score = 100 bits (252), Expect = 2e-23
Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 44/276 (15%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L L N + L F GL L++L L +
Sbjct: 80 TLILTGNPIQSLALGAFSGL------------------------SSLQKLVAVETNLASL 115
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPALKSLNHL 211
+ L+ L++L + HN I + ++ L LDLS N + + L+ L+ +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 212 ----LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-IEPDSFKGLEKKLKRLNLG 266
L L+L+ N ++ + AF+ + L LT+ N SL + +GL L+ L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLV 233
Query: 267 GNELT---RVPQTSLSKLENLRKLELLHNRIALIEE------GDFEGLHNLDSLVLAHNQ 317
E + + S LE L L + R+A ++ F L N+ S L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + F++ LEL L
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Score = 96.3 bits (240), Expect = 6e-22
Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 65/321 (20%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L NL L F L ++ L + ++ + + S L+ L+L N++
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSL----------- 197
+ T L L + L+L N + I+ G F+ L +L L N
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 198 --------------------AVVPSPALKSLNHLLILNLNHNKISALHSN---AFQGLDT 234
AL+ L +L I + + F L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ------------------- 275
+ ++ + ++ S+ + L L + + P
Sbjct: 284 VSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 276 TSLSKLENLRKLELLHNRIALIEEGD--FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
S L +L L+L N ++ G +L L L+ N + T+ F L L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399
Query: 334 SLELDGNHIHTVDPA-AFSGL 353
L+ +++ + F L
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSL 420
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 121 bits (305), Expect = 1e-31
Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 23/257 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
L + N + ++ ++R L ++ ++ S +S + K+ LNLG N
Sbjct: 92 NLYIGTNKITDISALQNLT-NLRELYLNEDNI-----SDISPLANLTKMYSLNLGANHNL 145
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ LS + L L + +++ + L L L+ N + + L SL
Sbjct: 146 SDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTS 200
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L N+I+ + + L L I NK++ + P L +L L +G N++
Sbjct: 201 LHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQI 255
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
+ + ++ L L+ L + N+I+ I L L+SL L +NQL V L
Sbjct: 256 SDIN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311
Query: 331 LLNSLELDGNHIHTVDP 347
L +L L NHI + P
Sbjct: 312 NLTTLFLSQNHITDIRP 328
Score = 119 bits (301), Expect = 4e-31
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 25/257 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
L + + + G + ++ +L ++ + + + +S + KL L +G N++T
Sbjct: 48 KLVVAGEKVASIQGIEYLT-NLEYLNLNGNQI-----TDISPLSNLVKLTNLYIGTNKIT 101
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ +L L NLR+L L + I+ I + L+L N SP L ++
Sbjct: 102 DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTG 156
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L L + +K+ + L L L++ N++ I P L L N++
Sbjct: 157 LNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQI 211
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
T + ++ + L L++ +N+I + L L L + NQ+ I L
Sbjct: 212 TDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLT 265
Query: 331 LLNSLELDGNHIHTVDP 347
L L + N I +
Sbjct: 266 KLKMLNVGSNQISDISV 282
Score = 109 bits (274), Expect = 2e-27
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ + +L + G ++ + + L NL L L N+I I LT L + N
Sbjct: 44 ESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ + AL++L +L L LN + IS + L + L + N L + +
Sbjct: 100 ITDI--SALQNLTNLRELYLNEDNIS--DISPLANLTKMYSLNLGANHN-LSDLSPLSNM 154
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L L + +++ V ++ L +L L L +N+I I L +L N
Sbjct: 155 -TGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
Q+ I P A++ LNSL++ N I + P
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSP 238
Score = 101 bits (255), Expect = 1e-24
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 35/229 (15%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLA 198
L + ++ + L + L + ++ + + +++T+L ++ +A
Sbjct: 2 AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVA 57
Query: 199 VVPSPALKSLNHLLILNLNHNKISA--------------LHSN------AFQGLDTLEIL 238
+ ++ L +L LNLN N+I+ + +N A Q L L L
Sbjct: 58 SIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115
Query: 239 TIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298
+ E+ +S I P L K+ LNLG N + LS + L L + +++ +
Sbjct: 116 YLNEDNISDISP--LANL-TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT 171
Query: 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
L +L SL L +NQ+ I P A L L+ N I + P
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216
Score = 96.5 bits (241), Expect = 1e-22
Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 21/229 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
L L N+ + + +LT+ S + ++ I L L+L N++
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-----KDVTPIANLTDLYSLSLNYNQIE 190
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ L+ L +L N+I I L L + N + + L +L+
Sbjct: 191 DIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQ 244
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L L + N+IS + NA + L L++L + N++S I L +L L L N+L
Sbjct: 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV--LNNL-SQLNSLFLNNNQL 299
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
+ L NL L L N I I L +DS A+ ++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 76.4 bits (189), Expect = 8e-16
Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
L L +N + ++ L + + T + + + + ++ + +L L +G N++
Sbjct: 181 SLSLNYNQIEDISPL--ASLTSLHYFTAYVNQI-----TDITPVANMTRLNSLKIGNNKI 233
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
T + L+ L L LE+ N+I+ I + L L++ N ++ + L +L+
Sbjct: 234 TDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLS 287
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L LN+N++ GL L L + +N ++ I P L K+ +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL-SKMDSADFANQV 344
Query: 270 LTR 272
+ +
Sbjct: 345 IKK 347
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 121 bits (305), Expect = 2e-30
Identities = 44/278 (15%), Positives = 103/278 (37%), Gaps = 28/278 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L HN + L F + L + + + + E + +++ L N+L
Sbjct: 577 LLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFT-DQVEGLGFSHNKLKY 633
Query: 153 VPQT-SLSKLENLRKLELLHNRI------ALIEEGDFEGKALTQLDLSQNSLAVVPSPAL 205
+P + + + ++ +N+I D++G + + LS N + P+
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 206 KSLNHLLILNLNHNKISALHSNA-------FQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ + + + L++N ++++ N+ ++ L + + NKL+ + D
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL------IEEGDFEGLHNLDSLV 312
L +++ N + P T L+ + H R A +L L
Sbjct: 754 YLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
+ N +R + ++ P L L++ N ++D +
Sbjct: 813 IGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSV 847
Score = 119 bits (300), Expect = 8e-30
Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 27/282 (9%)
Query: 95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ + + L D+ + ++N L + +L+ LN+ N
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISA 530
Query: 154 PQT---------SLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
Q ++ + +N + + L LD N + + +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590
Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
+ L L L++N+I + + D +E L NKL I +
Sbjct: 591 --FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 263 LNLGGNELTRVPQTSLSKLE-----NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
++ N++ + ++ N + L +N I F + +++L++N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 318 LRTIP-------PRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+ +IP + + LL +++L N + ++ +
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750
Score = 115 bits (290), Expect = 2e-28
Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 26/323 (8%)
Query: 50 HNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI 109
+ + L +I+ + + L + + +
Sbjct: 356 THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415
Query: 110 FF----GLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELTRVPQTSLSKLEN 163
+ ++ I N + + +I KL+ + + T +
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDN-----IAVD 468
Query: 164 LRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
+ + EE + K LT ++L L L L LN+ N+
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528
Query: 223 ALHS---------NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
+ + ++I + N L + KL L+ N++ +
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH-LPLL 332
+ L L+L +N+I I E ++ L +HN+L+ IP A + ++
Sbjct: 589 E--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Query: 333 NSLELDGNHIHTVDPAAFSGLEA 355
S++ N I + ++
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDD 669
Score = 93.8 bits (233), Expect = 4e-21
Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 40/252 (15%)
Query: 94 YLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIG----KKLKRLNLGG 147
L HN L + + + + + + S+ + L
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--------KALTQLDLSQNSLAV 199
NE+ + P + + + L +N + I E + LT +DL N L
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
Query: 200 VPSP-ALKSLNHLLILNLNHNKISALHSNAF-----QGLDTLEILTIFENKLSLIEPDSF 253
+ +L +L +++++N S+ + + N++ P
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802
Query: 254 KGLEK--------------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
+L L++ N + TS+ LL+++
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Query: 294 IALIEEGDFEGL 305
I D G+
Sbjct: 863 TQDIRGCDALGI 874
Score = 92.2 bits (229), Expect = 1e-20
Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 16/221 (7%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--------ALTQL 190
++ L+L G ++ +L L+ L + + + + ++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
+ + + L + L + ++ + ++ L +I + N+++ I
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFI-S 441
Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
+ + L KL+ + + T + + + EE + L +L
Sbjct: 442 KAIQRL-TKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
+ L + T P LP L SL + N +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Score = 76.8 bits (189), Expect = 2e-15
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 11/172 (6%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
+T L L+ A+ L L +L+ + + T ++ ++++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH-----NRIALIEEGD 301
+ F +++L +L + + R P+ K ++ L+ NRI I +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA- 443
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ L L + A++ V + + N ++S L
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-----ELSWSNL 490
Score = 64.1 bits (156), Expect = 2e-11
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 19/180 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD--------IRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
+ L +N + + D + + + + L + + ++ L +++
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760
Query: 146 GGNELTRVPQTSLSKLENLRKLELLHNRIA-------LIEEGDFEGKALTQLDLSQNSLA 198
N + P T L+ + H R A G +L QL + N +
Sbjct: 761 SYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
V L L ++ N ++ + + + +K I G+E+
Sbjct: 820 KVDEKLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 120 bits (302), Expect = 3e-30
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 18/218 (8%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ + NL +T + ++L ++ ++ ++ I ++ + +T+L L+ N
Sbjct: 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNK 76
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L + L +L +L L L+ NKI L ++ + L L+ L++ N +S I L
Sbjct: 77 LTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDING--LVHL 130
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
+L+ L LG N++T + T LS+L L L L N+I+ I GL L +L L+ N
Sbjct: 131 -PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 185
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ + A L L+ LEL S L
Sbjct: 186 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLV 221
Score = 112 bits (280), Expect = 2e-27
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+ ++ +++ V + L N+ KL L N++ I+ K L L L +N +
Sbjct: 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKI 99
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ S LK L L L+L HN IS + N L LE L + NK++ I L
Sbjct: 100 KDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL- 152
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
KL L+L N+++ + L+ L L+ L L N I+ + GL NLD L L +
Sbjct: 153 TKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 208
Query: 318 LRTIPPRVFAHLPLLNSLE-LDGN 340
P ++L + N+++ DG+
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGS 232
Score = 110 bits (276), Expect = 7e-27
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
+ + ++ K L + + E ++ Q+ + + +
Sbjct: 1 MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKS 57
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
V ++ L ++ L LN NK++ + L L L + ENK+ + K L KK
Sbjct: 58 VQ--GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDL-KK 110
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
LK L+L N ++ + L L L L L +N+I I L LD+L L NQ+
Sbjct: 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIS 166
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDP 347
I P A L L +L L NHI +
Sbjct: 167 DIVP--LAGLTKLQNLYLSKNHISDLRA 192
Score = 101 bits (253), Expect = 7e-24
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 22/233 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
L+ ++ I + +NS + S+ I + +L L GN+LT
Sbjct: 25 KDNLKKKSVTDAVTQNEL-NSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLNGNKLT 78
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ L+ L+NL L L N+I + + K L L L N ++ + L L
Sbjct: 79 DI--KPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQ 132
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L L L +NKI+ + L L+ L++ +N++S I P GL KL+ L L N +
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHI 187
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
+ + +L+ L+NL LEL L +++ L T
Sbjct: 188 SDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238
Score = 63.2 bits (153), Expect = 4e-11
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 17/172 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
+L L N + L+ L ++ L++ ++ + S ++ + +L+ L LG N++
Sbjct: 91 WLFLDENKIKDLSSL--KDLKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGNNKI 143
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
T + T LS+L L L L N+I+ I G L L LS+N ++ + AL L
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--ALAGLK 197
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
+L +L L + N L + + L E S G +K
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 116 bits (293), Expect = 6e-29
Identities = 41/278 (14%), Positives = 101/278 (36%), Gaps = 25/278 (8%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ ++ + + E+ ++ K L + +
Sbjct: 210 QFYMGNS---PFVAENICEA-WENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTK 264
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNSLAVVPSPA 204
T L L ++ + + NR E+ + + + + + N+L P
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 205 -LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
L+ + L +L +N++ AF L L + N+++ I + ++++ L
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFT-EQVENL 382
Query: 264 NLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDFEG-------LHNLDSLVLAH 315
+ N+L +P + + ++ +N I ++ +F+ N+ S+ L++
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
NQ+ P +F+ L+S+ L GN + + +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Score = 111 bits (279), Expect = 4e-27
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 25/239 (10%)
Query: 138 KKLKRLNLGGNELTRVPQ--------TSLSKLENLRKLELLHNRIA-LIEEGDFEG-KAL 187
+++ +N+ N Q E ++ + + +N + E + K L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
L+ N L PA S L LNL +N+I+ + +N + +E L+ NKL
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQ-------TSLSKLENLRKLELLHNRIALIEEG 300
I + ++ NE+ V + K N+ + L +N+I+ +
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 301 DFEGLHNLDSLVLAHNQLRTIP-------PRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
F L S+ L N L IP F + LL S++L N + + +
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Score = 111 bits (279), Expect = 4e-27
Identities = 56/286 (19%), Positives = 99/286 (34%), Gaps = 29/286 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNE 149
+ + +NNL + L + L E L + G KL LNL N+
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL----EGKLPAFGSEIKLASLNLAYNQ 364
Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--ALTQLDLSQNSLAVVPS----- 202
+T +P E + L HN++ I ++ +D S N + V
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 203 --PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE--- 257
P ++ +NL++N+IS F L + + N L+ I +S K
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 258 ---KKLKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEG-----DFEGLHNL 308
L ++L N+LT++ + L L ++L +N + +G
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ N+ P P L L++ N I V+ +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS 590
Score = 102 bits (255), Expect = 5e-24
Identities = 36/269 (13%), Positives = 91/269 (33%), Gaps = 48/269 (17%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDFEG----- 184
++ ++++ L+ N+L +P + + ++ +N I ++ +F+
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 185 ---KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNA-------FQGLDT 234
++ ++LS N ++ P + + L +NL N ++ + N+ F+
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ------------------- 275
L + + NKL+ + D L ++L N ++ P
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 276 ----------TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
++ +L +L++ N I + E + N+ L + N +I
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSY 606
Query: 326 FAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L + + ++
Sbjct: 607 VCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 75.5 bits (186), Expect = 4e-15
Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 14/221 (6%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK-----ALTQLDLS 193
++ L+L G + ++ +L L L L + + E + Q
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 194 QNSLAVVPSPALKSLN--HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
+ + L+ +N + + + + N ++ +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK 200
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
+ L KL++ +G + + EN + E+ ++ L +L +
Sbjct: 201 AVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDV 254
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
+ + T P LP + + + N + +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Score = 63.5 bits (155), Expect = 3e-11
Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 11/172 (6%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF----QGLDTLEILTIFE 242
+T L L + A+ L L +L L + + E
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 243 NKLSLIEPDSFKGLE-KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
D + L + + + + + S ++ L N I + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA- 201
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L + ++ + + + + + L
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNL 248
Score = 58.1 bits (141), Expect = 2e-09
Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 23/182 (12%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD--------IRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
+ L N L ++ + + + + + L + + ++ L ++L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNS 196
N ++ P T L+ + + R + +LTQL + N
Sbjct: 521 SYNSFSKFP-TQPLNSSTLKGFGIRNQR--DAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ V +++ +L++ N ++ + + +F +K I +
Sbjct: 578 IRKVNEKITPNIS---VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
Query: 257 EK 258
++
Sbjct: 635 KR 636
Score = 49.3 bits (118), Expect = 1e-06
Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 6/169 (3%)
Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
+ + P +L S + L+L S +A L LE+L + + + E
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 251 DSFK---GLEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGL 305
++ + + + +L K + + +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ N + + L L + + + E
Sbjct: 183 LKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENE 230
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 110 bits (277), Expect = 7e-29
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
+D L +P+ P + + L N I + AF L + + N++
Sbjct: 14 NIVDCRGKGLTEIPTNLPE-----TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
S + PD+F+GL + L L L GN++T +P++ L +L+ L L N+I + F+ L
Sbjct: 69 SELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
HNL+ L L N+L+TI F+ L + ++ L N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 100 bits (252), Expect = 3e-25
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL 205
G LT +P T+L E + ++ L N I +I G F K L ++DLS N ++ + A
Sbjct: 20 GKGLTEIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
+ L L L L NKI+ L + F+GL +L++L + NK++ + D+F+ L L L+L
Sbjct: 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSL 135
Query: 266 GGNELTRVPQTSLSKLENLRKLELLHN 292
N+L + + + S L ++ + L N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 95.9 bits (239), Expect = 2e-23
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ L N + +P + S + LR+++L +N+I+ + F+G ++L L L N +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+P + L L +L LN NKI+ L +AFQ L L +L++++NKL I +F L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RA 153
Query: 260 LKRLNLGGN 268
++ ++L N
Sbjct: 154 IQTMHLAQN 162
Score = 81.6 bits (202), Expect = 2e-18
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
I + + +++ V+ + S KKL+R++L N+++ + + L +L L L N+
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
I + + FEG +L L L+ N + + A + L++L +L+L NK+ + F L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 233 DTLEILTIFEN 243
++ + + +N
Sbjct: 152 RAIQTMHLAQN 162
Score = 71.2 bits (175), Expect = 1e-14
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
G LT +P T+L E + ++ L N I +I G F L + L++NQ+ + P F
Sbjct: 20 GKGLTEIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 327 AHLPLLNSLELDGNHIHTVDPAAFSGL 353
L LNSL L GN I + + F GL
Sbjct: 77 QGLRSLNSLVLYGNKITELPKSLFEGL 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 109 bits (273), Expect = 4e-28
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
+LDL LA + + L L LNL++N++ L + F L L L + N+L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
+ F L +L +L LGGN+L +P +L L++L L N++ I G F+ L N
Sbjct: 98 LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L +L L+ NQL+++P F L L ++ L GN
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 102 bits (257), Expect = 1e-25
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
++D SL VPS PA L+L ++ L F+GL L L + N+L
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTE-----KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+ F L +L L L N+L +P L L KL L N++ + G F+ L
Sbjct: 72 QTLSAGVFDDL-TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L L NQL++IP F L L +L L N + +V AF L
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Score = 92.8 bits (231), Expect = 5e-22
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
++L+L L + + L L L L +N++ + G F+ L L L+ N LA
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+P L L L L N++ +L S F L L+ L + N+L I +F L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-N 156
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
L+ L+L N+L VP + +L L+ + L N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 74.7 bits (184), Expect = 1e-15
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L L+ L L+ F GL + L + + L + + +L L L N+L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLASL 98
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLL 212
P L L KL L N++ + G F+ L +L L+ N L +P+ A L +L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
L+L+ N++ ++ AF L L+ +T+F N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 44.3 bits (105), Expect = 2e-05
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L +N L L +F L + L + + L + + K LK L L N+L
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQS 145
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+P + KL NL+ L L N++ + G F+ L + L N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 107 bits (270), Expect = 7e-28
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNA-FQGLDTLEILTIFENK 244
T +D S L +P P + L LN+N+ + L + F+ L L + NK
Sbjct: 14 TTVDCSNQKLNKIPEHIPQ-----YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK 68
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
++ IE +F+G + + L N L V LE+L+ L L NRI + F G
Sbjct: 69 ITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L ++ L L NQ+ T+ P F L L++L L N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 94.7 bits (236), Expect = 4e-23
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 163 NLRKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
+L L +N ++E G F+ L +++ S N + + A + + + + L N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 221 ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280
+ + F+GL++L+ L + N+++ + DSF GL ++ L+L N++T V +
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDT 151
Query: 281 LENLRKLELLHN 292
L +L L LL N
Sbjct: 152 LHSLSTLNLLAN 163
Score = 83.2 bits (206), Expect = 7e-19
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
L ++N+ V+E + + +L+++N N++T + + + + ++ L NR
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
+ ++ F+G ++L L L N + V + + L+ + +L+L N+I+ + AF L
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 233 DTLEILTIFEN 243
+L L + N
Sbjct: 153 HSLSTLNLLAN 163
Score = 63.1 bits (154), Expect = 7e-12
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 283 NLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341
+L L +N ++E G F+ L L + ++N++ I F +N + L N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 342 IHTVDPAAFSGL 353
+ V F GL
Sbjct: 93 LENVQHKMFKGL 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 106 bits (267), Expect = 8e-27
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ + NL +T + ++L ++ ++ ++ I ++ + +T+L L+ N
Sbjct: 24 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNK 79
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L + L +L +L L L+ NK+ L ++ + L L+ L++ N +S I L
Sbjct: 80 LTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING--LVHL 133
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
+L+ L LG N++T + T LS+L L L L N+I+ I GL L +L L+ N
Sbjct: 134 -PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 188
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + A L L+ LEL S L
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223
Score = 97.4 bits (243), Expect = 2e-23
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+ ++ +++ V + L N+ KL L N++ I+ K L L L +N +
Sbjct: 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKV 102
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ S LK L L L+L HN IS + N L LE L + NK++ I L
Sbjct: 103 KDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL- 155
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
KL L+L N+++ + L+ L L+ L L N I+ + GL NLD L L +
Sbjct: 156 TKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
P ++L + N+++ + T +
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241
Score = 87.0 bits (216), Expect = 9e-20
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ +L L GN+LT + L+ L+NL L L N++ + + K L L L N
Sbjct: 68 PNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNG 123
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
++ + L L L L L +NKI+ + L L+ L++ +N++S I P GL
Sbjct: 124 ISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
KL+ L L N ++ + +L+ L+NL LEL L +++
Sbjct: 178 -TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
Query: 317 QLRTIPPRVFAHLPLLNSLEL 337
L + P + + +
Sbjct: 235 SL--VTPEIISDDGDYEKPNV 253
Score = 82.4 bits (204), Expect = 4e-18
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 20/209 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
+ ++++ + G + ++ L ++ + L + + + K L L L N++
Sbjct: 50 QIIANNSDIKSVQGIQYL-PNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKVK 103
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ +SL L+ L+ L L HN I+ I L L L N + + L L
Sbjct: 104 DL--SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTK 157
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L L+L N+IS + GL L+ L + +N +S + GL K L L L E
Sbjct: 158 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRA--LAGL-KNLDVLELFSQEC 212
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEE 299
P S L ++ + E
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEI 241
Score = 59.7 bits (145), Expect = 2e-10
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
I + S + + ++ L + ++ +++ V
Sbjct: 9 TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV-- 61
Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
+ L N+ KL L N++ I+ L NL L L N+++ + L L SL
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL 117
Query: 336 ELDGNHIHTVDP 347
L+ N I ++
Sbjct: 118 SLEHNGISDING 129
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 109 bits (274), Expect = 1e-26
Identities = 54/285 (18%), Positives = 97/285 (34%), Gaps = 11/285 (3%)
Query: 63 NGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN 122
+ + + I + T S L + ++ N+ ++ ++ + + +I N
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISN 256
Query: 123 SSLAVVEESSLSSIG----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 178
L + K L + + N+ + ++
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 179 EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL--HSNAFQGLDTL 235
LD S N L L L L L N++ L + + +L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
+ L I +N +S E K L LN+ N LT L ++ L+L N+I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
I + + L L L +A NQL+++P +F L L + L N
Sbjct: 435 SIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 103 bits (258), Expect = 2e-24
Identities = 40/219 (18%), Positives = 88/219 (40%), Gaps = 10/219 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
+ + L G R S + L+ L +++ + + +E + + + +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS--FKGL 256
+V ++ L L+ ++N ++ L LE L + N+L + + +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 257 EKKLKRLNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGL-HNLDSLVLA 314
K L++L++ N ++ + S ++L L + N + + F L + L L
Sbjct: 374 -KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPRIKVLDLH 429
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
N++++IP +V L L L + N + +V F L
Sbjct: 430 SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL 467
Score = 93.0 bits (231), Expect = 6e-21
Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 10/299 (3%)
Query: 26 ATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLK 85
+ L L C+L+ + + ++ Q + K + L + T + +
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245
Query: 86 SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAV--VEESSLSSIGKKLKRL 143
+ ++ F + G ++ L+IH V +S + I +
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
N + V SK+ L+ +N + + L L L N L +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 203 PA--LKSLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
A + L L+++ N +S +L L + N L+ F+ L +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPR 422
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
+K L+L N++ +P+ + KLE L++L + N++ + +G F+ L +L + L N
Sbjct: 423 IKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 88.0 bits (218), Expect = 3e-19
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
+D S+N L VP + ILN++ N IS L ++ L L IL I N++ ++
Sbjct: 5 VDRSKNGLIHVPKDLSQKTT---ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGLHNL 308
FK ++L+ L+L N+L ++ NL+ L+L N AL +F + L
Sbjct: 62 ISVFKFN-QELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLN-SLELDGNHIHTVDPAAFSGL 353
L L+ L AHL + L L + DP
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163
Score = 87.2 bits (216), Expect = 5e-19
Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 11/206 (5%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
+ +K LN+ N ++ + + + L LR L + HNRI ++ F+ + L LDL
Sbjct: 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFENKLSLIEPD 251
S N L + +L H L+L+ N AL F + L+ L + L
Sbjct: 77 SHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
L L LG + E L+ I +F + ++
Sbjct: 134 PIAHLNISKVLLVLGETYGEKED------PEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLEL 337
+A+ +L I + + L
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSIL 213
Score = 81.4 bits (201), Expect = 4e-17
Identities = 37/282 (13%), Positives = 85/282 (30%), Gaps = 22/282 (7%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEES--SLSSIG-KKLKRLNLGGNEL 150
+L L +L K + L+I + + +E L + L + E
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG----------KALTQLDLSQNSLAVV 200
+ S+ + NL + LT ++ + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 201 PSPALKSLNHLLILNLNHNKISALH-----SNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
L + ++++ K+ + L L I + + + ++
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
+ N + V SK+ L+ +N + + L L++L+L
Sbjct: 299 F-SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 316 NQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPA-AFSGLE 354
NQL+ + + + L L++ N + + S +
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399
Score = 71.4 bits (175), Expect = 7e-14
Identities = 41/298 (13%), Positives = 84/298 (28%), Gaps = 43/298 (14%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
YL L HN L K++ L +HL + ++ + +LK L L L +
Sbjct: 73 YLDLSHNKLVKISCHPTVNL--KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDF----EGKALTQLDLSQNSLAVVPSPALKSLN 209
++ L + L +L E+ + ++L + + + ++K++
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFEN----KLSLIEPDSFKGLE-------- 257
+L + N+ S L L+ N + + L+
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250
Query: 258 -------------------------KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
K L + + N+ +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
++ + L ++N L HL L +L L N + + A
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 103 bits (260), Expect = 8e-25
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 19/211 (9%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
+ + LG +T S + L+ + L+ I I+ E LTQ++ S N
Sbjct: 24 AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
L + LK+L L+ + +N+N+I+ + L L LT+F N+++ I+P K L
Sbjct: 80 LTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNL 133
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L RL L N ++ + +LS L +L++L + L L L+ L ++ N
Sbjct: 134 -TNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSN 187
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
++ I A L L SL N I + P
Sbjct: 188 KVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 98.1 bits (245), Expect = 7e-23
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 131 SSLSSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KAL 187
S ++ +G L L+L GN+L + +L+ L NL L+L +N+I+ + G L
Sbjct: 212 SDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA--PLSGLTKL 267
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
T+L L N ++ + L L L L LN N++ + + L L LT++ N +S
Sbjct: 268 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD 323
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
I P L KL+RL N+++ V SL+ L N+ L HN+I+ + L
Sbjct: 324 ISP--VSSL-TKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTR 376
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
+ L L P A++ + N++
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Score = 87.3 bits (217), Expect = 3e-19
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 156 TSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
+ + L K L + + + D +T L + + + ++ LN+L +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGIKSI--DGVEYLNNLTQI 73
Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
N ++N+++ + + L L + + N+++ I P L L L L N++T +
Sbjct: 74 NFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDID 128
Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
L L NL +LEL N I+ I GL +L L NQ+ + P A+L L
Sbjct: 129 --PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181
Query: 335 LELDGNHIHTVDP 347
L++ N + +
Sbjct: 182 LDISSNKVSDISV 194
Score = 61.5 bits (150), Expect = 1e-10
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
LKL N + ++ + +L ++ + L +S I K L L L N ++
Sbjct: 269 ELKLGANQISNISPLAGL-TALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 322
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ +S L L++L +N+++ + + L N ++ + L +L
Sbjct: 323 DIS--PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTR 376
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
+ L LN + N + + L S G ++ N
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG---SYTEPDITWNLP 433
Query: 271 TRVPQTS 277
+ + S
Sbjct: 434 SYTNEVS 440
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 101 bits (253), Expect = 9e-25
Identities = 55/261 (21%), Positives = 109/261 (41%), Gaps = 26/261 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
+ +N+ I L+ + + +++ + L L L N++T
Sbjct: 23 KIAAGKSNVTDTVTQADL-DGITTLSAFGTGV-----TTIEGVQYLNNLIGLELKDNQIT 76
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ L L + +LEL N + + G +++ LDL+ + V L L++
Sbjct: 77 DLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSN 130
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
L +L L+ N+I+ + + GL L+ L+I ++S + P L KL L N++
Sbjct: 131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKI 185
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
+ + L+ L NL ++ L +N+I+ + NL + L + + P +L
Sbjct: 186 SDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241
Query: 331 LLNSLELDGNHIHTVDPAAFS 351
+ N ++ G + PA S
Sbjct: 242 VPNVVK--GPSGAPIAPATIS 260
Score = 94.4 bits (235), Expect = 4e-22
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 158 LSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
L N K+ + + + + D +T L + + ++ LN+L+ L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70
Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
N+I+ L + L + L + N L + GL + +K L+L ++T V
Sbjct: 71 KDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGL-QSIKTLDLTSTQITDVT-- 123
Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
L+ L NL+ L L N+I I GL NL L + + Q+ + P A+L L +L+
Sbjct: 124 PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179
Query: 337 LDGNHIHTVDP 347
D N I + P
Sbjct: 180 ADDNKISDISP 190
Score = 52.8 bits (127), Expect = 5e-08
Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 15/165 (9%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
L L + +T +++ L + + + +++S + L+ L++G +++
Sbjct: 111 TLDLTSTQITDVTPLAGLS-NLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVS 164
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
+ L+ L L L+ N+I+ I L ++ L N ++ V L + ++
Sbjct: 165 DLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSN 218
Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
L I+ L + I+ L ++ S G
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 103 bits (259), Expect = 1e-24
Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 40/260 (15%)
Query: 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
L + + L L + + L I +++L +SL ++ +L+ L + GN+LT +P
Sbjct: 45 LNVGESGLTTLPDCLPAHI--TTLVIPDNNL-----TSLPALPPELRTLEVSGNQLTSLP 97
Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
L L + + G L +L + N L +P L L
Sbjct: 98 V-LPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPV----LPPGLQEL 146
Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
+++ N++++L + L L + N+L+ + P GL++ L++ N+L +P
Sbjct: 147 SVSDNQLASLPA----LPSELCKLWAYNNQLTSL-PMLPSGLQE----LSVSDNQLASLP 197
Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
L KL +NR+ + L L+++ N+L ++P L
Sbjct: 198 TL----PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPV----LPSELKE 245
Query: 335 LELDGNHIHTVDPAAFSGLE 354
L + GN + ++ P SGL
Sbjct: 246 LMVSGNRLTSL-PMLPSGLL 264
Score = 96.9 bits (241), Expect = 3e-22
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 37/262 (14%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L++ N L L + L+I + + L ++ L +L + GN+LT +
Sbjct: 85 TLEVSGNQLTSLPVLPP---GLLELSIFS-----NPLTHLPALPSGLCKLWIFGNQLTSL 136
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
P L++L + N++A + L +L N L +P + L
Sbjct: 137 P----VLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPSGLQE 185
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L+++ N++++L L L + N+L+ S L LK L + GN LT +
Sbjct: 186 LSVSDNQLASL----PTLPSELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSL 236
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
P L++L + NR+ + L SL + NQL +P HL
Sbjct: 237 P----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSET 287
Query: 334 SLELDGNHIHTVDPAAFSGLEA 355
++ L+GN + A + +
Sbjct: 288 TVNLEGNPLSERTLQALREITS 309
Score = 95.0 bits (236), Expect = 1e-21
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 32/217 (14%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
LN+G + LT +P + ++ L + N + + L L++S N L
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL 93
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+P L L I + + AL S L L IF N+L+ + P GL+
Sbjct: 94 TSLP-VLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSL-PVLPPGLQ 144
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
+ L++ N+L +P + L KL +N++ + L L ++ NQ
Sbjct: 145 E----LSVSDNQLASLP----ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQ 192
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L ++P L L N + ++ PA SGL+
Sbjct: 193 LASLPT----LPSELYKLWAYNNRLTSL-PALPSGLK 224
Score = 78.8 bits (194), Expect = 4e-16
Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 28/225 (12%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L + N L L ++ L +N+ L +SL + L+ L++ N+L +
Sbjct: 145 ELSVSDNQLASLPALPS---ELCKLWAYNNQL-----TSLPMLPSGLQELSVSDNQLASL 196
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
P L KL +NR+ + L +L +S N L +P + L
Sbjct: 197 PTL----PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLPV----LPSELKE 245
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L ++ N++++L L L+++ N+L+ + P+S L +NL GN L+
Sbjct: 246 LMVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESLIHL-SSETTVNLEGNPLSER 299
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
L + I + +L LA
Sbjct: 300 TL---QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Score = 64.1 bits (156), Expect = 2e-11
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
N +LN+ + ++ L + L I +N L+ + P +L+ L + G
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSL-PALP----PELRTLEVSG 90
Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
N+LT +P L L + + L L + NQL ++P
Sbjct: 91 NQLTSLPV-LPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPV---- 138
Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLE 354
P L L + N + ++ PA S L
Sbjct: 139 LPPGLQELSVSDNQLASL-PALPSELC 164
Score = 49.9 bits (119), Expect = 6e-07
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L LN+G + LT +P + ++ L + N + + L +L ++
Sbjct: 38 LNNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP----ALPPELRTLEVSG 90
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHI 342
NQL ++P + L L+ H+
Sbjct: 91 NQLTSLPV-LPPGLLELSIFSNPLTHL 116
Score = 36.8 bits (85), Expect = 0.009
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
V + L + + + + + ++ +LV+ N L ++P
Sbjct: 26 GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPA---- 78
Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLE 354
P L +LE+ GN + ++ P GL
Sbjct: 79 LPPELRTLEVSGNQLTSL-PVLPPGLL 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 100 bits (250), Expect = 2e-24
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 6/200 (3%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
+ NL +T + ++L ++ ++ ++ I ++ + L L N L +
Sbjct: 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQ-YLPNVRYLALGGNKLHDI 78
Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
ALK L +L L L N++ +L + F L L+ L + EN+L + F L L
Sbjct: 79 S--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNL 135
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
LNL N+L +P+ KL NL +L+L +N++ + EG F+ L L L L NQL++
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 321 IPPRVFAHLPLLNSLELDGN 340
+P VF L L + L N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
Score = 97.0 bits (242), Expect = 2e-23
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 141 KRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
+ + + P K L + + E ++ Q+ + + +
Sbjct: 1 ETITVSTPIKQIFPDDAFAE----TIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKS 55
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
V ++ L ++ L L NK+ + +A + L L L + N+L + F L
Sbjct: 56 VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKL-TN 110
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
LK L L N+L +P KL NL L L HN++ + +G F+ L NL L L++NQL+
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
++P VF L L L L N + +V F L
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Score = 66.6 bits (163), Expect = 1e-12
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 133 LSSIG-----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KA 186
L I L L L GN+L +P KL NL++L L+ N++ + +G F+
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
LT L+L+ N L +P L +L L+L++N++ +L F L L+ L +++N+L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 247 LIEPDSFKGLEKKLKRLNLGGN 268
+ F L L+ + L N
Sbjct: 195 SVPDGVFDRL-TSLQYIWLHDN 215
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 101 bits (252), Expect = 1e-23
Identities = 57/284 (20%), Positives = 99/284 (34%), Gaps = 12/284 (4%)
Query: 66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI--FFGLDIRHLTIHNS 123
+I + Q++ ++ L L+ L+ F+ + +L I+N
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 124 SLAVVEESSLSSIG----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 179
++ + + K L ++ + S + L + I
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 180 GDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQ--GLDTLE 236
+ T L+ +QN +L L L L N + A + +LE
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
L + N L+ D + + LNL N LT L ++ L+L +NRI
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS 464
Query: 297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
I + L L L +A NQL+++P VF L L + L N
Sbjct: 465 IPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 91.5 bits (227), Expect = 2e-20
Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 6/192 (3%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
K L+L N ++ + +S L LR L L HNRI ++ F + L LD+S N L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNA-FQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + SL H L+L+ N L F L L L + K ++ L
Sbjct: 114 NISCCPMASLRH---LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L+L + SL N L L+ + +L ++ L L L++ +
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229
Query: 318 LRTIPPRVFAHL 329
L +
Sbjct: 230 LNDENCQRLMTF 241
Score = 88.0 bits (218), Expect = 3e-19
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 13/170 (7%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
+ +D S +L VP P L+L+ N IS L L L +L + N++
Sbjct: 34 SMVDYSNRNLTHVPKDLPP-----RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG 304
++ F + L+ L++ N L + + +LR L+L N L +F
Sbjct: 89 RSLDFHVFLFN-QDLEYLDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPL-LNSLELDGNHIHTVDPAAFSGL 353
L L L L+ + R + AHL L L+L HI + +
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194
Score = 78.0 bits (192), Expect = 6e-16
Identities = 45/296 (15%), Positives = 83/296 (28%), Gaps = 41/296 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
YL + HN L ++ L RHL + + V+ KL L L + ++
Sbjct: 104 YLDVSHNRLQNISCCPMASL--RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Query: 154 PQTSLSKLE-NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
++ L + L+L+ I E + T L L + ++ S+N L
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221
Query: 213 ILNLNHNKISALHSNAFQGL----------------------------------DTLEIL 238
L L++ K++ + +E L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281
Query: 239 TIFENKL----SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
I+ + E + K L ++ + S + L +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
I + L N + + L L +L L N + A
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 91.2 bits (227), Expect = 2e-21
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+ NLG +T + S +L ++ ++ I + F L +L LS N +
Sbjct: 19 ANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGMQFF-TNLKELHLSHNQI 75
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + LK L L L++N N++ L+ L L + N+L + L
Sbjct: 76 SDLS--PLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTDS--LIHL- 127
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K L+ L++ N+L + L L L L+L N I L ++ + L +
Sbjct: 128 KNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQK 183
Query: 318 LRTIPPRVFAHLPLLNSLE-LDGNHI 342
P + L + N+++ DG I
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWI 209
Score = 90.9 bits (226), Expect = 3e-21
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 15/187 (8%)
Query: 156 TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILN 215
L N K L + + E + + +++ + ++ +L L+
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQK-ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69
Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
L+HN+IS L + + L LE L++ N+L + L RL L NEL
Sbjct: 70 LSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPS----ACLSRLFLDNNELRDT-- 121
Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
SL L+NL L + +N++ I L L+ L L N++ L +N +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177
Query: 336 ELDGNHI 342
+L G
Sbjct: 178 DLTGQKC 184
Score = 72.4 bits (178), Expect = 8e-15
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLN 264
L + + NL ++ L S + L ++ + + + + LK L+
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFF-TNLKELH 69
Query: 265 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPR 324
L N+++ + + L L L +L + NR+ + L L L +N+LR
Sbjct: 70 LSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTDS- 123
Query: 325 VFAHLPLLNSLELDGNHIHTVDP 347
HL L L + N + ++
Sbjct: 124 -LIHLKNLEILSIRNNKLKSIVM 145
Score = 61.2 bits (149), Expect = 7e-11
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 302
++ + PD GL + NLG +T + S +L ++ ++ I +
Sbjct: 7 TPINQVFPDP--GL-ANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLA--GM 59
Query: 303 EGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ NL L L+HNQ+ + P L L L ++ N + ++ + L
Sbjct: 60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS 109
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 88.7 bits (221), Expect = 2e-21
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 8/169 (4%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
++L L + A+ L L + +++ L A L L +
Sbjct: 4 PEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQE 61
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
L+ + + L + +L ELTR+ ++ +L KL+ ++ + ++
Sbjct: 62 LTRL-KAAVGEL-PEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKAA-VGE 117
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
L L + +L + V LP + + + + AF L
Sbjct: 118 LPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL-KTAFERL 164
Score = 86.7 bits (216), Expect = 1e-20
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 6/164 (3%)
Query: 160 KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
+L KL+ ++ + ++ E ++L L + A+ L L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQ 60
Query: 220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
+++ L A L L +L+ + + L + +L ELT + ++
Sbjct: 61 ELTRL-KAAVGELPEKSKLQEIYQELTRL-KAAVGEL-PEKSKLQEIYQELTELKA-AVG 116
Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
+L KL+ ++ + ++ L + + +L +
Sbjct: 117 ELPEKSKLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDLKT 159
Score = 77.9 bits (193), Expect = 2e-17
Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 8/152 (5%)
Query: 134 SSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLD 191
+++G + +L ELTR+ ++ +L KL+ ++ + ++ E ++L
Sbjct: 21 AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 79
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
L + A+ L L + +++ L A L L +L+ +
Sbjct: 80 EIYQELTRLK-AAVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQL-KA 136
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
+ L + ELT + + +L +
Sbjct: 137 AVGEL-PDQSKQQQIYQELTDLKT-AFERLGH 166
Score = 40.9 bits (97), Expect = 2e-04
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
+L KL+ ++ + ++ L L + +L + LP + L+
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 59
Query: 340 NHIHTVDPAAFSGL 353
+ + AA L
Sbjct: 60 QELTRL-KAAVGEL 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 88.9 bits (221), Expect = 4e-21
Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 12/185 (6%)
Query: 159 SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218
S + L + A I E +LT + L+ ++ + ++ +++ L +N+
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM--NSLTYITLANINVTDLT--GIEYAHNIKDLTINN 75
Query: 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL 278
+ N GL LE L I ++ + + GL L L++ + T +
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKI 132
Query: 279 SKLENLRKLELLHN-RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
+ L + ++L +N I I + L L SL + + + P LN L
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188
Query: 338 DGNHI 342
I
Sbjct: 189 FSQTI 193
Score = 86.9 bits (216), Expect = 2e-20
Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 12/185 (6%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
K LG + + + +++ +L + L + + + E + L ++
Sbjct: 23 KAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ L++L L + +++ GL +L +L I + L
Sbjct: 78 ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
K+ ++L N L L L+ L + + + E L+ L
Sbjct: 136 -PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191
Query: 317 QLRTI 321
+
Sbjct: 192 TIGGK 196
Score = 81.5 bits (202), Expect = 2e-18
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
KA L Q+S A + + SL ++ L + ++ L + ++ LTI
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL--TGIEYAHNIKDLTINNIH 77
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
+ P GL L+RL + G ++T +LS L +L L++ H+
Sbjct: 78 ATNYNP--ISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 305 LHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
L ++S+ L++N + I P LP L SL + + +H
Sbjct: 135 LPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG 176
Score = 78.8 bits (195), Expect = 1e-17
Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 15/183 (8%)
Query: 118 LTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 177
+ SS A + E+ + L + L +T + T + N++ L + +
Sbjct: 28 GLLGQSSTANITEAQM----NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY 81
Query: 178 EEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE 236
G L +L + + P L L L +L+++H+ L +
Sbjct: 82 NP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
Query: 237 ILTIFEN-KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
+ + N ++ I P K L +LK LN+ + + + L +L I
Sbjct: 140 SIDLSYNGAITDIMP--LKTL-PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194
Query: 296 LIE 298
+
Sbjct: 195 GKK 197
Score = 69.6 bits (171), Expect = 3e-14
Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Query: 74 NQKIQHTMTTLKSKSGLI-IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESS 132
N + + T +++ + + Y+ L + N+ LTG + +I+ LTI+N ++
Sbjct: 27 NGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHA-----TN 80
Query: 133 LSSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQ 189
+ I L+RL + G ++T +LS L +L L++ H+ +
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
+DLS N P LK+L L LN+ + + + L L F + +
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGKK 197
Score = 58.0 bits (141), Expect = 3e-10
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
T + S + + L + L +T + T + N++ L + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM-NSLTYITLANINVTDL--TGIEYAHNIKDLTINNI 76
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
GL NL+ L + + + + L L L++ + +
Sbjct: 77 HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 353 L 353
L
Sbjct: 135 L 135
Score = 34.2 bits (79), Expect = 0.036
Identities = 6/68 (8%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
+ + +++L + LA+ + + + + L ++
Sbjct: 18 PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 340 NHIHTVDP 347
H +P
Sbjct: 76 IHATNYNP 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 92.4 bits (230), Expect = 7e-21
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 30/242 (12%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
+ L HNSS+ + ++ I K L +L N +T + LS+ NL L N
Sbjct: 44 LTSLDCHNSSI-----TDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN 95
Query: 173 RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
++ ++ LT L+ N L + + L LN N ++ + + L
Sbjct: 96 KLTNLDVTPL--TKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQL 150
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
L+ + I +L L+ N++T + +S+ + L +L N
Sbjct: 151 TELDC-----HLNKKITKLDVTPQ-TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
I + D L L + N+L I L L + N + +D + S
Sbjct: 202 NITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK 255
Query: 353 LE 354
L
Sbjct: 256 LT 257
Score = 86.7 bits (215), Expect = 5e-19
Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 21/218 (9%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
E+ S +L L L+ ++ I + E LT+L + N+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ + L +L L + NK++ L L L L NKL+ ++
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN--- 126
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L LN N LT + +S L +L+ N+ I + D L +L + N
Sbjct: 127 -PLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
++ + + LLN L D N+I +D L
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLDLNQNIQLT 215
Score = 86.3 bits (214), Expect = 8e-19
Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 29/251 (11%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L NN+ L L +L ++ L ++ + L KL LN N+LT++
Sbjct: 68 KLICTSNNITTLDLSQNTNL--TYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKL 121
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
+S+ L L N + I+ LT+LD N + + L
Sbjct: 122 D---VSQNPLLTYLNCARNTLTEIDVSHN--TQLTELDCHLNKK--ITKLDVTPQTQLTT 174
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L+ + NKI+ L L L N ++ ++ + +L L+ N+LT +
Sbjct: 175 LDCSFNKITELD---VSQNKLLNRLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEI 227
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
++ L L + N + + D L L +L L I H L
Sbjct: 228 D---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEID---LTHNTQLI 278
Query: 334 SLELDGNHIHT 344
+ +G
Sbjct: 279 YFQAEGCRKIK 289
Score = 86.3 bits (214), Expect = 9e-19
Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 39/270 (14%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
YL N L KL L +L ++L ++ S +L L+ N+
Sbjct: 110 YLNCDTNKLTKLDVSQNPLL--TYLNCARNTLTEIDVSHN----TQLTELDCHLNKKITK 163
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
++ L L+ N+I ++ K L +L+ N++ + L L
Sbjct: 164 L--DVTPQTQLTTLDCSFNKITELDVSQN--KLLNRLNCDTNNITKLD---LNQNIQLTF 216
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L+ + NK++ + L L N L+ ++ + KL L+ +L +
Sbjct: 217 LDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS----KLTTLHCIQTDLLEI 269
Query: 274 PQTSLSKLE----------------NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
T ++L + +L LL + A I E D L L L + +
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
L + +H L SL HI
Sbjct: 330 LTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Score = 79.3 bits (196), Expect = 1e-16
Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 30/254 (11%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L N + +L L L +++ ++ + +L L+ N+LT +
Sbjct: 174 TLDCSFNKITELDVSQNKLL--NRLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEI 227
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
++ L L + N + ++ LT L Q L + L L+
Sbjct: 228 D---VTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEID---LTHNTQLIY 279
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
+ + L +L ++ ++ KL L L ELT +
Sbjct: 280 FQAEGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQNP----KLVYLYLNNTELTEL 333
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL-- 331
+S L+ L ++ I + L++ A Q T+P + L
Sbjct: 334 D---VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388
Query: 332 ---LNSLELDGNHI 342
+ L+ GN +
Sbjct: 389 AVSPDLLDQFGNPM 402
Score = 67.8 bits (166), Expect = 1e-12
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)
Query: 182 FEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241
F + + + + + L L L+ +++ I+ + + L L L
Sbjct: 15 FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICT 72
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
N ++ ++ L L N+LT + ++ L L L N+ + + D
Sbjct: 73 SNNITTLDLSQN----TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK---LTKLD 122
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
L L A N L I +H L L+ N T
Sbjct: 123 VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165
Score = 49.7 bits (119), Expect = 8e-07
Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 19/186 (10%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
Y N L +L L L + L ++ + + +L G ++
Sbjct: 237 YFDCSVNPLTELDVSTLSKL--TTLHCIQTDLLEIDLTHNT----QLIYFQAEGC--RKI 288
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
+ ++ L L+ I ++ L L L+ L + + L
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITELDLSQN--PKLVYLYLNNTELTELD---VSHNTKLKS 343
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL----KRLNLGGNE 269
L+ + I ++ + L E + + ++ + L+ GN
Sbjct: 344 LSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
Query: 270 LTRVPQ 275
+ P
Sbjct: 402 MNIEPG 407
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 90.1 bits (224), Expect = 4e-20
Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 32/240 (13%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
L ++N L SSL + L+ L N LT +P+ L++L +
Sbjct: 73 AHELELNNLGL-----SSLPELPPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKAL 126
Query: 175 ALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDT 234
+ + L L +S N L +P L++ + L I+++++N + L +
Sbjct: 127 SDLPPL------LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPS 174
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
LE + N+L E + L L + N L ++P +L + +N +
Sbjct: 175 LEFIAAGNNQLE--ELPELQNL-PFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL 227
Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ E + L L ++ +N L+T+P P L +L + N++ + P L
Sbjct: 228 EELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLT 280
Score = 82.0 bits (203), Expect = 2e-17
Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 53/278 (19%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
+ +N+L KL + + N+ L L + L + N L
Sbjct: 199 AIYADNNSLKKLPDLPL---SLESIVAGNNIL-----EELPELQNLPFLTTIYADNNLLK 250
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
+P +L L + N + + E ++LT LD+S+N + + +L
Sbjct: 251 TLP----DLPPSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSE----LPPNL 299
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
LN + N+I +L +LE L + NKL + P +L+RL N L
Sbjct: 300 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PALPP----RLERLIASFNHLA 350
Query: 272 RVPQTSLSKLENLRKLELLHNRIALIEEG---------------DFEGLHNLDSLVLAHN 316
VP +NL++L + +N + + E NL L + N
Sbjct: 351 EVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
LR P + L ++ + A +
Sbjct: 407 PLREFPDI----PESVEDLRMNSERVVDPYEFAHETTD 440
Score = 75.4 bits (186), Expect = 3e-15
Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 31/218 (14%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ-------- 189
K +E R + + L E + L+
Sbjct: 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL 93
Query: 190 --LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
L S NSL +P +SL LL+ N N +S L LE L + N+L
Sbjct: 94 ESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK 145
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
+ + LK +++ N L ++P +L + +N++ + E + L
Sbjct: 146 L--PELQNS-SFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE--LQNLPF 196
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
L ++ +N L+ +P L S+ N + +
Sbjct: 197 LTAIYADNNSLKKLPD----LPLSLESIVAGNNILEEL 230
Score = 64.2 bits (157), Expect = 2e-11
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 42/216 (19%)
Query: 161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL------------ 208
L++ + + + K+ T+ + + P
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 209 -NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK--------- 258
L LN+ +S+L LE L N L+ + P+ + L+
Sbjct: 70 DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLK 124
Query: 259 -------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
L+ L + N+L ++P L L+ +++ +N + + + +L+ +
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFI 178
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
+NQL +P +LP L ++ D N + +
Sbjct: 179 AAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD 212
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 88.9 bits (220), Expect = 1e-19
Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 30/267 (11%)
Query: 81 MTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKK 139
M+ + + +N + F D + + + +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
L L L+ +P + LE+ N + + E +L LD N L+
Sbjct: 61 FSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPE---LPASLEYLDACDNRLST 114
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+P L L++++N+++ L LE + N+L+++ P+
Sbjct: 115 LPE----LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML-PELPT----S 161
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL----DSLVLAH 315
L+ L++ N+LT +P E+L L++ N + + H+
Sbjct: 162 LEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAV-PVRNHHSEETEIFFRCRE 216
Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHI 342
N++ IP + L ++ L+ N +
Sbjct: 217 NRITHIPENIL-SLDPTCTIILEDNPL 242
Score = 88.9 bits (220), Expect = 2e-19
Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 40/264 (15%)
Query: 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
+ L NN L+ + +N+ + S K ++ L G
Sbjct: 3 IMLPINNNFSLSQ----------NSFYNTISGTYAD--YFSAWDKWEKQALPGENRNEAV 50
Query: 155 QT-SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
+ +L+L ++ + + +T L+++QN+L +P L
Sbjct: 51 SLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPE----LPASLEY 104
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L+ N++S L +L+ L + N+L+++ P+ LE +N N+LT +
Sbjct: 105 LDACDNRLSTLPEL----PASLKHLDVDNNQLTML-PELPALLEY----INADNNQLTML 155
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL-- 331
P +L L + +N++ + E +L++L ++ N L ++P +
Sbjct: 156 P----ELPTSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEE 207
Query: 332 -LNSLELDGNHIHTVDPAAFSGLE 354
N I + P L+
Sbjct: 208 TEIFFRCRENRITHI-PENILSLD 230
Score = 46.1 bits (109), Expect = 1e-05
Identities = 38/262 (14%), Positives = 72/262 (27%), Gaps = 36/262 (13%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
Y+ +N L L + L++ N+ L + L + + L+ L++ N L +
Sbjct: 144 YINADNNQLTMLPELP---TSLEVLSVRNNQL-----TFLPELPESLEALDVSTNLLESL 195
Query: 154 PQTSLSKLENLRK----LELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
P + + + NRI I E + L N L+ +L
Sbjct: 196 PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
Query: 210 HLLILNLNHNKISALHS--------------NAFQGLDTLEILTIFENKLSLIEPDSFKG 255
+ S F ++ I+ ++F
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314
Query: 256 LEKKLKRLN------LGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGLHN 307
+L ++ + LS LR+ A E+ +N
Sbjct: 315 FLDRLSDTVSARNTSGFREQVAAWLEK-LSASAELRQQSFAVAADATESCEDRVALTWNN 373
Query: 308 LDSLVLAHNQLRTIPPRVFAHL 329
L +L H + L
Sbjct: 374 LRKTLLVHQASEGLFDNDTGAL 395
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 84.0 bits (208), Expect = 3e-19
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
T ++ VP+ PA + L+L N + +L + F L +L L + NKL
Sbjct: 10 TTVECYSQGRTSVPTGIPAQTT-----YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL 64
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+ F L L LNL N+L +P KL L++L L N++ + +G F+ L
Sbjct: 65 QSLPNGVFNKL-TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L L L NQL+++P VF L L + L N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 76.6 bits (189), Expect = 1e-16
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
L + N L + F L L +L LGGN+L +P +KL +L L L N+
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + G F+ L L L L NQL+++P VF L L L L N + +V F L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Score = 63.2 bits (154), Expect = 7e-12
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
+ I + L+L N L +P +L +L +L L N++ + G F +LT L+L
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
S N L +P+ L L L LN N++ +L F L L+ L +++N+L +
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Query: 253 FKGLEKKLKRLNLGGN 268
F L L+ + L N
Sbjct: 144 FDRL-TSLQYIWLHDN 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 86.7 bits (214), Expect = 3e-19
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 243 NKLSLIEPDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
+L G E L L + L + L L LR L ++ + + +
Sbjct: 17 RDGALDSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
F L L L+ N L ++ + L L L L GN +H
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 81.3 bits (200), Expect = 2e-17
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 270 LTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
L ENL +L + + + + +E D GL L +L + + LR + P F
Sbjct: 20 ALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
P L+ L L N + ++ GL
Sbjct: 79 TPRLSRLNLSFNALESLSWKTVQGL 103
Score = 71.7 bits (175), Expect = 3e-14
Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 25/122 (20%)
Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
L ENL +L + + L + L+ L
Sbjct: 20 ALDSLH-HLPGAENLTELYIENQ----------------------QHLQHLELRDLRGLG 56
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
L L + + + + +AF L L + N L + + +GL L+ L L GN
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL--SLQELVLSGNP 114
Query: 270 LT 271
L
Sbjct: 115 LH 116
Score = 55.5 bits (133), Expect = 8e-09
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 114 DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
++ L I + L +E L + +L+ L + + L V + L +L L N
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90
Query: 173 RIALIEEGDFEGKALTQLDLSQNSL 197
+ + +G +L +L LS N L
Sbjct: 91 ALESLSWKTVQGLSLQELVLSGNPL 115
Score = 31.2 bits (70), Expect = 0.53
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 353
S + L L ++ H+ ++ GL
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 84.6 bits (210), Expect = 1e-18
Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 18/249 (7%)
Query: 118 LTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 177
T +L + + L L L + P +L +L+ + + + +
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMEL 119
Query: 178 EEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH-NKISAL--------HSNA 228
+ + L L L++N L +P ++ SLN L L++ +++ L S
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
QGL L+ L + + + P S L + LK L + + L+ + ++ L L +L+
Sbjct: 179 HQGLVNLQSLRLEWTGIRSL-PASIANL-QNLKSLKIRNSPLSALG-PAIHHLPKLEELD 235
Query: 289 LLH-NRIALIEEGDFEGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
L + F G L L+L + L T+P L L L+L G +
Sbjct: 236 LRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRL 293
Query: 347 PAAFSGLEA 355
P+ + L A
Sbjct: 294 PSLIAQLPA 302
Score = 77.3 bits (191), Expect = 4e-16
Identities = 46/268 (17%), Positives = 85/268 (31%), Gaps = 25/268 (9%)
Query: 95 LKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
L + L + + L + L+ + + L
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ----AFRLSHLQHMTIDAAGL 116
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS-QNSLAVVPS------- 202
+P ++ + L L L N + + L +L + L +P
Sbjct: 117 MELPD-TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 203 -PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
+ L +L L L I +L ++ L L+ L I + LS + + L KL+
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL-GPAIHHL-PKLE 232
Query: 262 RLNLGG-NELTRVPQTSLSKLENLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L+L G L P L++L L + + + L L+ L L
Sbjct: 233 ELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNL 290
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDP 347
+ P + A LP + + + +D
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 58.8 bits (143), Expect = 5e-10
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 9/157 (5%)
Query: 185 KALTQLDLS-QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
L +L L + N + +N + +I T
Sbjct: 12 SGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGR 66
Query: 244 KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303
L + L L L + P +L +L+ + + + + + +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPD-TMQ 124
Query: 304 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
L++L LA N LR +P A L L L +
Sbjct: 125 QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 82.4 bits (204), Expect = 1e-18
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
T +D A VP+ P IL L+ N+I+ L F L L+ L + N+L
Sbjct: 22 TTVDCRSKRHASVPAGIPTNAQ-----ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
+ F L +L L+LG N+LT +P +L +L++L + N++ + G E L
Sbjct: 77 GALPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERL 134
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
+L L L NQL++IP F L L L GN
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 66.3 bits (162), Expect = 9e-13
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
+ L L N+I +E G F+ L +L L N L +P SL L +L+L N+++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
L S F L L+ L + NKL+ + P + L L L L N+L +P + +L +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL-THLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 284 LRKLELLHN 292
L L N
Sbjct: 161 LTHAYLFGN 169
Score = 59.3 bits (144), Expect = 2e-10
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+ L L N++T++ L NL++L L N++ + G F+ LT LDL N L V
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
+PS L HL L + NK++ L + L L L + +N+L I +F L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRL-SS 160
Query: 260 LKRLNLGGN 268
L L GN
Sbjct: 161 LTHAYLFGN 169
Score = 52.4 bits (126), Expect = 4e-08
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L L N + KL +F L +++ L + ++ L + S+ +L L+LG N+LT
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLTV 102
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPA---LKSLN 209
+P +L +L++L + N++ + G LT L L QN L +P A L SL
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 210 HLLILN 215
H +
Sbjct: 163 HAYLFG 168
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 84.6 bits (210), Expect = 5e-18
Identities = 61/285 (21%), Positives = 106/285 (37%), Gaps = 42/285 (14%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDI------RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG 147
L L N+L +G + + + L + +++L + S L+ L+L
Sbjct: 104 SLDLSRNSL---SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 148 NELTRVPQTSLSKLENLRKLELLH---NRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSP 203
N ++ + +L+ L N+I+ ++ L LD+S N+ P
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNF-STGIP 217
Query: 204 ALKSLNHLLILNLNHNKIS----------------ALHSNAFQG------LDTLEILTIF 241
L + L L+++ NK+S + SN F G L +L+ L++
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIA-LIEE 299
ENK + PD G L L+L GN VP L L L N + +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPM 336
Query: 300 GDFEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 343
+ L L L+ N+ +P + L +L+L N+
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 78.8 bits (195), Expect = 3e-16
Identities = 66/275 (24%), Positives = 99/275 (36%), Gaps = 28/275 (10%)
Query: 95 LKLRHNNLPKLTGFIFFGL----DIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGN 148
+ L L + L + L + NS + S+S L L+L N
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI----NGSVSGFKCSASLTSLDLSRN 110
Query: 149 ELTRV--PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA---VVP 201
L+ TSL L+ L + N + + +L LDLS NS++ VV
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
L L ++ NKIS LE L + N S P L+
Sbjct: 171 WVLSDGCGELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDC-SALQ 226
Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF--EGLHNLDSLVLAHNQLR 319
L++ GN+L+ ++S L+ L + N+ G L +L L LA N+
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYLSLAENKFT 282
Query: 320 -TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
IP + L L+L GNH + P F
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Score = 78.4 bits (194), Expect = 5e-16
Identities = 56/220 (25%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 134 SSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLD 191
K L+ L+L N+ T +P + L L+L N + L L
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 192 LSQNSLA-VVPSPALKSLNHLLILNLNHNKIS-ALHSNAFQGLDTLEILTIFENKLS-LI 248
LS N+ + +P L + L +L+L+ N+ S L + +L L + N S I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 249 EPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEG----DFE 303
P+ + + L+ L L N T ++P +LS L L L N + G
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYL----SGTIPSSLG 439
Query: 304 GLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 342
L L L L N L IP ++ L +L LD N +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL 478
Score = 74.9 bits (185), Expect = 6e-15
Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 56/290 (19%)
Query: 94 YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNE 149
+L + N + +G + ++ L + +++ + + +G L+ L++ GN+
Sbjct: 182 HLAISGNKI---SGDVDVSRCVNLEFLDVSSNNF----STGIPFLGDCSALQHLDISGNK 234
Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEG---DFEGKALTQLDLSQNSLA-VVPSPAL 205
L+ ++S L+ L + N+ G K+L L L++N +P
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 206 KSLNHLLILNLNHNKIS----------------ALHSNAFQG---------LDTLEILTI 240
+ + L L+L+ N AL SN F G + L++L +
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 241 FENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQT-SLSKLENLRKLELLHNRIALIE 298
N+ S P+S L L L+L N + + + L++L L +N
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF---- 406
Query: 299 EG----DFEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 343
G L SL L+ N L TIP L L L+L N +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLE 455
Score = 62.6 bits (153), Expect = 7e-11
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 54/271 (19%)
Query: 134 SSIG--KKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGKALTQ 189
++ +L L+L N L+ +P SL L LR L+L N + I + K L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 190 LDLSQNSLA-VVPSPALKSLNHLLILNLNHNKIS----------------ALHSNAFQG- 231
L L N L +P L + +L ++L++N+++ L +N+F G
Sbjct: 471 LILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 232 -------LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG----------------- 267
+L L + N + P + K+ + G
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 268 ----NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIP 322
E + L++L + F+ ++ L +++N L IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+P L L L N I P L
Sbjct: 650 K-EIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Score = 36.4 bits (85), Expect = 0.014
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 138 KKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KAL 187
+ L++ N L+ +P+ + + L L L HN G + L
Sbjct: 632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHND--------ISGSIPDEVGDLRGL 682
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
LDLS N L A+ +L L ++L++N +S
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 82.3 bits (203), Expect = 6e-18
Identities = 48/269 (17%), Positives = 87/269 (32%), Gaps = 21/269 (7%)
Query: 90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSI--GKKLKRLNLGG 147
L ++ I L ++ LT+ + + + L+ L L
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 148 NELTRVPQTSLSKL--ENLRKLELLHNRIALIEE-----GDFEGKALTQLDLSQNSLAVV 200
E+T L + +L L L + A + + L L ++Q
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 201 PSPALKSLNHLLILNLNHNKISA----LHSNAFQGLDTLEILTIFENKLSLI--EPDSFK 254
++ L L+L+ N + + TL++L + + +
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224
Query: 255 GLEKKLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
+L+ L+L N L S L L L + + +G L LD L
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---L 281
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
++N+L P LP + +L L GN
Sbjct: 282 SYNRLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 69.2 bits (169), Expect = 2e-13
Identities = 37/230 (16%), Positives = 60/230 (26%), Gaps = 35/230 (15%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLH------NRIALIEEGDFEGKALTQLDL 192
LKRL + + ++ + L+ L A + G L L+L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 193 SQNSLAVVPSPALK----SLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI 248
S A + + L +L++ + L L + +N
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-- 186
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE---EGDFEGL 305
E + K L+ L L + +
Sbjct: 187 -------------------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 306 HNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L L L+HN LR LNSL L + V + L
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277
Score = 63.8 bits (155), Expect = 1e-11
Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 21/216 (9%)
Query: 70 EFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI-----FFGLDIRHLTIHNSS 124
+ + L +G + L LR+ + ++ + ++ L+I +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 125 LAVVEESSLSSIGKKLKRLNLGGNELTR----VPQTSLSKLENLRKLELLHNRIALIEEG 180
+ L L+L N + K L+ L L + +
Sbjct: 161 SLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 181 DFE----GKALTQLDLSQNSLAVVPSPALKS-LNHLLILNLNHNKISALHSNAFQGLDTL 235
L LDLS NSL + L LNL+ + + L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KL 276
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
+L + N+L ++ L+L GN
Sbjct: 277 SVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPFL 309
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 79.3 bits (196), Expect = 1e-17
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 261 KRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L NEL R+ L +L +L KLEL N++ IE FEG ++ L L N+++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
I ++F L L +L L N I V P +F L
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Score = 75.4 bits (186), Expect = 2e-16
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 236 EILTIFENKLSLIEPD-SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
L + +N+L I D F L L +L L N+LT + + ++++L+L N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
I F GLH L +L L NQ+ + P F HL L SL L N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 64.6 bits (158), Expect = 1e-12
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 165 RKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
+L L N + I +G F L +L+L +N L + A + +H+ L L NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+ + F GL L+ L +++N++S + P SF+ L L LNL N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASN 136
Score = 53.1 bits (128), Expect = 2e-08
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
L ++++ L + L L +L L N+LT + + ++++L+L N+
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---LKSLNHLLILN 215
I I F G L L+L N ++ V + L SL L + +
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Score = 41.9 bits (99), Expect = 9e-05
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
++ L LG N++ + L L+ L L N+I+ + G FE +LT L+L+ N
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 77.5 bits (190), Expect = 9e-16
Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 12/308 (3%)
Query: 38 CCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKL 97
C + + C P + L ++ + T S + + L
Sbjct: 247 CVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPA 306
Query: 98 RH--NNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQ 155
+ LP+ T + + S+ ++L R L + T +
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366
Query: 156 TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILN 215
L + L++LE + L +AL L + +L + LK+++ +
Sbjct: 367 -ELESCKELQELEPENKWCLLTIILLM--RALDPLLYEKETLQYFST--LKAVDPMRAAY 421
Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
L+ + L N+ ++ ++ + L + L + L+L N L +P
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL-LLVTHLDLSHNRLRALPP 480
Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNS 334
+L+ L L L+ N + ++ L L L+L +N+L+ + P L
Sbjct: 481 -ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 335 LELDGNHI 342
L L GN +
Sbjct: 538 LNLQGNSL 545
Score = 75.6 bits (185), Expect = 3e-15
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 11/190 (5%)
Query: 158 LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217
+ E L + EL + +++ K L +L+ + +++L+ LL
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404
Query: 218 HNKISALHSNAFQGLDTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
S L + +D + + + + L+E K ++ L+L +LT +
Sbjct: 405 LQYFSTL-----KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-- 457
Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
L +L + L+L HNR+ + L L+ L + N L + A+LP L L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELL 514
Query: 337 LDGNHIHTVD 346
L N +
Sbjct: 515 LCNNRLQQSA 524
Score = 69.8 bits (170), Expect = 3e-13
Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 16/211 (7%)
Query: 93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
F +L L + +++ L N + + + L L L
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM----RALDPLLYEKETLQY 407
Query: 153 VPQTSLSKLENLRKLELLHNRIALI---EEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
++L ++ +R L R + E + L L+ L V+ L+ L
Sbjct: 408 F--STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL 463
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
+ L+L+HN++ AL L LE+L +N L ++ L +L+ L L N
Sbjct: 464 LVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANL-PRLQELLLCNNR 519
Query: 270 LTRVPQ-TSLSKLENLRKLELLHNRIALIEE 299
L + L L L L N + E
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 65.9 bits (160), Expect = 4e-12
Identities = 43/226 (19%), Positives = 71/226 (31%), Gaps = 31/226 (13%)
Query: 65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSS 124
L E K L ++ + Y K L S
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---DLRS 427
Query: 125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 184
++E S L ++ L+L +LT + L +L + L+L HNR+ +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAAL 485
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
+ L L S N+L V + +L L L L +N++ ++ L
Sbjct: 486 RCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ--------QSAAIQPLVSC--- 532
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290
+L LNL GN L + E L + +
Sbjct: 533 -------------PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 56.3 bits (135), Expect = 7e-09
Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 12/211 (5%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA 198
L +L + + ++ ++ LL +R + L + +LS
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362
Query: 199 VVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
V+ S + K L L N L A L + + + L ++P
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP------ 416
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
+ L+ ++ + ++R L L H + ++ E L + L L+HN
Sbjct: 417 -MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN 473
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
+LR +PP A L L L+ N + VD
Sbjct: 474 RLRALPP-ALAALRCLEVLQASDNALENVDG 503
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 73.1 bits (180), Expect = 2e-15
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
L L GN+ T VP LS ++L ++L +NRI+ + F + L +L+L++N+LR
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
IPPR F L L L L GN I V AF+ L
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Score = 70.4 bits (173), Expect = 2e-14
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
+ L + N+ +L+ P K L ++L N ++ + S S + L L L +NR
Sbjct: 32 DVTELYLDGNQFTLV-PKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
+ I F+GL +L L L N + +P F L L+ L + N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 61.9 bits (151), Expect = 1e-11
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
L L GN+ T VP LS ++L ++L +NRI+ + F L L LS N L
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
+P L L +L+L+ N IS + AF L L L I N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 60.8 bits (148), Expect = 3e-11
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
+L L N+ L+ + K LT +DLS N ++ + + + ++ LL L L++N++ +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
F GL +L +L++ N +S++ +F L L L +G N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL-SALSHLAIGAN 136
Score = 41.5 bits (98), Expect = 1e-04
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
L L N + + + + + N+ ++ + S S++ +L L L N L +P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNRLRCIP 94
Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+ L++LR L L N I+++ EG F AL+ L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 70.6 bits (174), Expect = 6e-14
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 37/248 (14%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLH 171
+ +L + +L SS+ L L +GG N L +++KL L L + H
Sbjct: 52 VNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 172 NRIALIEEGDFEG---------KALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNHNKI 221
G K L LD S N+L+ +P P++ SL +L+ + + N+I
Sbjct: 111 TN--------VSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRI 161
Query: 222 SALHSNAFQGLDTL-EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLS 279
S +++ L +TI N+L+ P +F L L ++L N L
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDAS-VLFG 218
Query: 280 KLENLRKLELLHNRIALIEEGD---FEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSL 335
+N +K+ L N + D NL+ L L +N++ T+P L L+SL
Sbjct: 219 SDKNTQKIHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSL 273
Query: 336 ELDGNHIH 343
+ N++
Sbjct: 274 NVSFNNLC 281
Score = 47.1 bits (113), Expect = 4e-06
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 43/171 (25%)
Query: 131 SSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEGD-----FEG 184
S S K + + N LT ++P + + L NL ++L N + EGD
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRNML----EGDASVLFGSD 220
Query: 185 KALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
K ++ L++NSLA + + +L L+L +N+I G T+
Sbjct: 221 KNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIY--------G-------TL--- 260
Query: 244 KLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNR 293
P L K L LN+ N L +P L+ +N+
Sbjct: 261 ------PQGLTQL-KFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 67.3 bits (165), Expect = 1e-13
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
+ L + NKL + F L +L +L+L N++ +P KL L L L N+
Sbjct: 29 SATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
+ + G F+ L L L L NQL+++P +F L L + L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 64.6 bits (158), Expect = 1e-12
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
RL L N+L +P KL L KL L N+I + +G F+ L L L L N+L++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+P VF L L L LD N + +V F L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Score = 55.0 bits (133), Expect = 2e-09
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
RL L N+L +P KL L KL L N+I + +G F+ LT L L +N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
+P+ L L L L+ N++ ++ F L +L+ + + N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 53.8 bits (130), Expect = 7e-09
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
+LEL N++ + G F+ LT+L LSQN + +P L L IL L+ NK+ +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
L + F L L+ L + N+L + F L L+++ L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 134
Score = 38.4 bits (90), Expect = 0.001
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 94 YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
L+L N L L +F L + L++ + + + + + KL L L N+L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHENKLQS 90
Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+P KL L++L L N++ + +G F+ +L ++ L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 63.1 bits (154), Expect = 3e-12
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
++ L I + L + K+ +IE + + ++ NE+ +
Sbjct: 1 MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRK 56
Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPL 331
+ L L+ L + +NRI I EG + L +L L+L +N L + A L
Sbjct: 57 L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114
Query: 332 LNSLELDGN 340
L L + N
Sbjct: 115 LTYLCILRN 123
Score = 52.4 bits (126), Expect = 2e-08
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 29/150 (19%)
Query: 95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
+KL + + + + R L + + V+E L + + ++ NE+ ++
Sbjct: 2 VKLTAELIEQAAQYTNA-VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL- 57
Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
L L+ L + +NRI I EG + +L L L
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQ-----------------------ALPDLTEL 93
Query: 215 NLNHNKISALHS-NAFQGLDTLEILTIFEN 243
L +N + L + L +L L I N
Sbjct: 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 50.8 bits (122), Expect = 7e-08
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
+ + L+L G ++ + + L+ ++ N I ++ F L L +L++ +N+
Sbjct: 19 VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNR 75
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHI 342
+ I + LP L L L N +
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSL 100
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
+ L + + Q + R+L+L +I +IE L D++ + N++R +
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
F L L +L ++ N I + L
Sbjct: 59 G--FPLLRRLKTLLVNNNRICRIGEGLDQALP 88
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 62.4 bits (152), Expect = 9e-12
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 23/193 (11%)
Query: 164 LRKLELLHNRIALIEE---GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
+ K + + I + EE +L + + + L +L L L+ N
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN 59
Query: 221 ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280
I + ++ G++ L IL++ N + IE + L+ L + N++ + + + K
Sbjct: 60 IEKI--SSLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASL--SGIEK 113
Query: 281 LENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIP----------PRVFAHL 329
L NLR L + +N+I E L L+ L+LA N L V L
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173
Query: 330 PLLNSLELDGNHI 342
P L LDG +
Sbjct: 174 PNLKK--LDGMPV 184
Score = 61.2 bits (149), Expect = 2e-11
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 130 ESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ 189
+++LS++ K K L L N + ++ +SLS +ENLR L L N I IE D L +
Sbjct: 41 DATLSTL-KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLS 246
L +S N +A + ++ L +L +L +++NKI+ + LD LE L + N L
Sbjct: 98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
Score = 52.8 bits (127), Expect = 2e-08
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
K K L L N + ++ +SLS +ENLR L L N I IE D L+ L +++NQ
Sbjct: 48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQ 104
Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
+ ++ L L L + N I
Sbjct: 105 IASLSG--IEKLVNLRVLYMSNNKITNWG 131
Score = 51.2 bits (123), Expect = 6e-08
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 239 TIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297
T ++ + + E S E + L+ + ++ +LS L+ + L L N I I
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKI 63
Query: 298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
G+ NL L L N ++ I + A L L + N I ++
Sbjct: 64 S--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 60.5 bits (147), Expect = 2e-11
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 160 KLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217
++++L L ++R +E E + L L L + + L LN L L L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72
Query: 218 HNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
N++S + L L + NK+ L + K L + LK L+L E+T +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDY 131
Query: 277 SLSKLENLRKLELL 290
+ + L +L L
Sbjct: 132 RENVFKLLPQLTYL 145
Score = 59.3 bits (144), Expect = 5e-11
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
+ ++ L + ++ + + + ++L+ L+ LT + +L KL L+KLEL
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLEL 71
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHI 342
NR++ E E NL L L+ N+++ + L L SL+L +
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
Score = 45.8 bits (109), Expect = 2e-06
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 258 KKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
+K L L + L + E L L ++ + I + L+ L L L+ N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDN 74
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
++ + P L L L GN I +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104
Score = 43.1 bits (102), Expect = 2e-05
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 280 KLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
++++L L ++R + EG + L+ L + L +I L L LEL
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELS 72
Query: 339 GNHIHTVDPAAFSGLE 354
N +
Sbjct: 73 DNRVSGGLEVLAEKCP 88
Score = 39.7 bits (93), Expect = 4e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L +N KL G ++ L+ N L + +L + KLK+L L N ++
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKL-NKLKKLELSDNRVSGG 79
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDF--EGKALTQLDLSQN 195
+ K NL L L N+I + + + + L LDL
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 60.5 bits (147), Expect = 3e-11
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 5/144 (3%)
Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
+ + + L L+ + IE E L L L L V + L L L L L
Sbjct: 22 TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78
Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQ 275
+ N+I + L L L + NKL I + K L + LK L+L E+T +
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLND 137
Query: 276 TSLSKLENLRKLELLHNRIALIEE 299
S + L +L L +E
Sbjct: 138 YRESVFKLLPQLTYLDGYDREDQE 161
Score = 58.6 bits (142), Expect = 1e-10
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
+ + L + K + + + L+ L+L L V ++L KL L+KLEL
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI 342
NRI + E L NL L L+ N+L+ I L L SL+L +
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Score = 56.7 bits (137), Expect = 5e-10
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE--KKLKRLNLGGNE 269
L+L+ + + LE L++ L + L KLK+L L N
Sbjct: 29 LVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKKLELSENR 82
Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGD-FEGLHNLDSLVLAHNQLRTIP---PRV 325
+ KL NL L L N++ I + + L L SL L + ++ + V
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142
Query: 326 FAHLPLLNSL 335
F LP L L
Sbjct: 143 FKLLPQLTYL 152
Score = 41.6 bits (98), Expect = 8e-05
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L +N K+ G +++ L++ N L V +L + KLK+L L N +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKL-PKLKKLELSENRIFGG 86
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA 198
KL NL L L N++ I + + L LDL +
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Score = 39.7 bits (93), Expect = 4e-04
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 281 LENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
+R+L L + + + EG NL+ L L + L ++ LP L LEL
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSE 80
Query: 340 NHIHTVDPAAFSGLE 354
N I L
Sbjct: 81 NRIFGGLDMLAEKLP 95
Score = 28.6 bits (64), Expect = 2.1
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 94 YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEE-SSLSSIGKKLKRLNLGGNELT 151
L+L N + + L + HL + + L + L + + LK L+L E+T
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVT 133
Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEE 179
+ S + L +L L +E
Sbjct: 134 NLNDYRESVFKLLPQLTYLDGYDREDQE 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 56.5 bits (137), Expect = 8e-10
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
++ G L VP + + L L N+I +E G F+ L L L L +NQL
Sbjct: 12 TTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+P VF L L L L+ N + ++ AF L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
+ L L N++T++ +L L +L+L +N++ ++ G F+ L L L L NQL++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 321 IPPRVFAHLPLLNSLELDGN 340
IP F +L L + L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 43.4 bits (103), Expect = 2e-05
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
++ G L VP + + L L N+I +E G F+ LT+LDL N L V
Sbjct: 12 TTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
+P+ L L L+LN N++ ++ AF L +L + + N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
L L N + + L L L+L++N+++ L + F L L L++ +N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 248 IEPDSFKGLEKKLKRLNLGGN 268
I +F L K L + L N
Sbjct: 93 IPRGAFDNL-KSLTHIWLLNN 112
Score = 36.4 bits (85), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+L RL+L N+LT +P KL L +L L N++ I G F+ K+LT + L N
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 56.1 bits (136), Expect = 1e-09
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
+N L VP + + ++L L +N+I +E G F+ L NL L N+L
Sbjct: 15 TLVNCQNIRLASVPAGIPT---DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
IP VF L L L+L+ NH+ ++ AF L
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104
Score = 55.0 bits (133), Expect = 3e-09
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
+RL L N++T++ L NL++L N++ I G F+ L L L L N L++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 321 IPPRVFAHLPLLNSLELDGN 340
IP F +L L + L N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 41.9 bits (99), Expect = 7e-05
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
+N L VP + + ++L L +N+I +E G F+ L QL + N L
Sbjct: 15 TLVNCQNIRLASVPAGIPT---DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
+P+ L L L+LN N + ++ AF L +L + ++ N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 38.4 bits (90), Expect = 0.001
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
+L L+ N + + L +L L N NK++A+ + F L L L + +N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 248 IEPDSFKGLEKKLKRLNLGGN 268
I +F L K L + L N
Sbjct: 96 IPRGAFDNL-KSLTHIYLYNN 115
Score = 35.3 bits (82), Expect = 0.013
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
L++L N+LT +P KL L +L+L N + I G F+ K+LT + L N
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 7e-09
Identities = 63/398 (15%), Positives = 133/398 (33%), Gaps = 112/398 (28%)
Query: 21 FG-SSLATSFLCLLLLLPCCLLQSVQQCPPHNE--ISPCQCSVKKNGLDILCEFTDNQKI 77
G + +A CL VQ ++ C+ + L++L QK+
Sbjct: 161 SGKTWVALD---------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------QKL 205
Query: 78 QHTMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSI 136
+ + + +KLR +++ +L + + + L V+ +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLVLLNVQNAKA 258
Query: 137 GKKLKRLNLGGNEL--TRVPQ-TSLSKLENLRKLELLHNRIALIEEGDFEGKAL--TQLD 191
NL L TR Q T + L H+ + L + E K+L LD
Sbjct: 259 ---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSLLLKYLD 312
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISAL------HSNAFQGLDTLEILTIFENKL 245
L P L + + L++ I+ + ++ ++ ++ TI E+ L
Sbjct: 313 CRPQDL---PREVLTT--NPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL-------ENLRKLELLHNRIALIE 298
+++EP ++ + +L +P LS + + + + LH +L+E
Sbjct: 364 NVLEPAEYRKMFDRLSVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVE 418
Query: 299 EGDFEG---LHNL--------DSLVLAHNQLRT-------------IPPRV----FAHLP 330
+ E + ++ ++ H + IPP + ++H+
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI- 477
Query: 331 LLNSLELDGNHIHTVDPAA-----------FSGLEAKV 357
G+H+ ++ F LE K+
Sbjct: 478 --------GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Score = 28.3 bits (62), Expect = 5.4
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 40/129 (31%)
Query: 65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSS 124
LD F + QKI+H T + + L L F+ ++ ++
Sbjct: 498 LDF--RFLE-QKIRHDSTAWNASGSI-----------LNTLQQLKFYK---PYICDNDPK 540
Query: 125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD--F 182
E +++I L ++ L T L RIAL+ E + F
Sbjct: 541 Y----ERLVNAILDFLPKI---EENLICSKYTDLL-------------RIALMAEDEAIF 580
Query: 183 EGKALTQLD 191
E +A Q+
Sbjct: 581 E-EAHKQVQ 588
Score = 27.5 bits (60), Expect = 8.9
Identities = 48/321 (14%), Positives = 90/321 (28%), Gaps = 96/321 (29%)
Query: 72 TDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEES 131
+ + Q+ Y + F+ D + V++
Sbjct: 9 FETGEHQYQ-------------YKDILSVFEDA---FVD-NFDCKD----------VQDM 41
Query: 132 SLSSIGKK-LKRLNLGGNELTRVPQ---TSLSKLEN---------LRK-LELLHNRIA-- 175
S + K+ + + + + ++ + T LSK E LR + L + I
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 176 LIEEGDFEGKALTQLDLSQNSLAV-----VPSP-ALKSLNHLLILNLNHNKISALH---- 225
+ + Q D N V V L L L L K +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLG 160
Query: 226 ----SNAFQGLDTLEILTIFENK---LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL 278
A + ++ + K L+L N + P+T L
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNL-------------------KNCNS--PETVL 199
Query: 279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-L 337
L+ L L+ I+ + ++ L + ++ R+ P N L L
Sbjct: 200 EMLQKL-----LYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 338 DG-NHIHTVDPAAFSGLEAKV 357
+ + AF L K+
Sbjct: 251 LNVQNAKAWN--AF-NLSCKI 268
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 51.6 bits (124), Expect = 1e-07
Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 40/192 (20%)
Query: 123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKL----ENLRKLELLHNRI---- 174
+L + + + L+ + G N L +K L ++++ N I
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203
Query: 175 --ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNA 228
L+ EG + L LDL N+ + + ALKS +L L LN +SA
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA----- 258
Query: 229 FQGLDTL-EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL-----SKLE 282
+G + + + EN L+ L L NE+ +L K+
Sbjct: 259 -RGAAAVVDAFSKLEN--------------IGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303
Query: 283 NLRKLELLHNRI 294
+L LEL NR
Sbjct: 304 DLLFLELNGNRF 315
Score = 50.5 bits (121), Expect = 4e-07
Identities = 52/256 (20%), Positives = 90/256 (35%), Gaps = 51/256 (19%)
Query: 138 KKLKRLNLGGNELTRVPQ----------TSLSKLENLRKLELLHNRI-----ALIEEGDF 182
K L+ RV +L K L + L N + +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 183 EGKALTQLDLSQNSL-------------AVVPSPALKSLNHLLILNLNHNKI---SALH- 225
+ L L L N L + + K+ L + N++ S
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 226 SNAFQGLDTLEILTIFENKLSL--IEPDSFKGLE--KKLKRLNLGGNELTRVPQTSLSK- 280
+ FQ L + + +N + IE +GL ++LK L+L N T + ++L+
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 281 ---LENLRKLELLHNRI------ALIEEGDFEGLHNLDSLVLAHNQL-----RTIPPRVF 326
NLR+L L + A+++ L +L L +N++ RT+ +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299
Query: 327 AHLPLLNSLELDGNHI 342
+P L LEL+GN
Sbjct: 300 EKMPDLLFLELNGNRF 315
Score = 47.8 bits (114), Expect = 3e-06
Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 48/239 (20%)
Query: 138 KKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--------- 184
+K + L GN + R +++ ++L E +++ E
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91
Query: 185 --KALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNAF-QGLDTLEI 237
L + LS N+ L L L L++N + + L L +
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL----ENLRKLELLHNR 293
+N L+ + G N L +K L ++++ N
Sbjct: 152 NKKAKNA-------------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198
Query: 294 I------ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 342
I L+ EG L L L N + A P L L L+ +
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256
Score = 43.9 bits (104), Expect = 5e-05
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 54/228 (23%)
Query: 164 LRKLELLHNRI-----ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLIL 214
+ L + I + E ++ ++ LS N++ A S + S L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 215 NLNHNKISALHSNAFQGLD----------TLEILTIFENKLSLIEPDSFKGLE------K 258
+ + + L L + + +N P + + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---FGPTAQEPLIDFLSKHT 122
Query: 259 KLKRLNLGGNELT-------------RVPQTSLSKLENLRKLELLHNRI------ALIEE 299
L+ L L N L LR + NR+ +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 300 GDFEGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHI 342
F+ L ++ + N +R + A+ L L+L N
Sbjct: 183 --FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Score = 34.7 bits (80), Expect = 0.035
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSK----LENLRKLELLHNRI------ALIEE-GDFEGKA 186
++LK L+L N T + ++L+ NLR+L L + A+++ E
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275
Query: 187 LTQLDLSQNSL----AVVPSPALKS-LNHLLILNLNHNKIS 222
L L L N + + + LL L LN N+ S
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 49.6 bits (119), Expect = 9e-07
Identities = 45/260 (17%), Positives = 94/260 (36%), Gaps = 51/260 (19%)
Query: 113 LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT----RVPQTSLSKLENLRKLE 168
LDI+ L I L+ + L + ++ + + L LT + ++L L +L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN-HLLILNLNHNKISALH-- 225
L N + GD + L++ + + L+L + ++
Sbjct: 63 LRSNEL-----GDVGVHCV--------------LQGLQTPSCKIQKLSLQNCCLTGAGCG 103
Query: 226 --SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK-------KLKRLNLGGNELTRVPQT 276
S+ + L TL+ L + +N L + L + +L++L L L+
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 277 SLSKL----ENLRKLELLHNRI-----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
L+ + + ++L + +N I ++ +G + L++L L + + R
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 328 ----HLPLLNSLELDGNHIH 343
L L L N +
Sbjct: 221 GIVASKASLRELALGSNKLG 240
Score = 46.5 bits (111), Expect = 7e-06
Identities = 43/214 (20%), Positives = 66/214 (30%), Gaps = 39/214 (18%)
Query: 138 KKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI------ALIEEGDFEGKAL 187
+L+ L + +T L E+L++L L N + L E G L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315
Query: 188 TQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS-----ALHSNAFQGLDTLEIL 238
L + S S L LL L +++N++ L Q L +L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375
Query: 239 TIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSLSKL-----ENLRKL 287
+ + +S S L L+ L+L N L L + L +L
Sbjct: 376 WLADCDVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
L E L +L LR I
Sbjct: 433 VLYDIYW------SEEMEDRLQALEKDKPSLRVI 460
Score = 46.1 bits (110), Expect = 1e-05
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 47/237 (19%)
Query: 133 LSSIGKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI------ALIEEGDF 182
L + K+++L+L LT V ++L L L++L L N + L E
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 183 EGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEIL 238
L +L L SL + L++ L +++N I+ G+ L
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE------AGVRVL--- 190
Query: 239 TIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI 294
K +L+ L L +T R ++ +LR+L L N++
Sbjct: 191 -----------CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 295 -----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 342
A + G L +L + + L L L GN +
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 48.9 bits (117), Expect = 1e-06
Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 49/258 (18%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
+ ++ + LNL GN L L ++ N+ L L N + L++
Sbjct: 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103
Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLN-HLLILNLNHNKIS-----ALHSNAF 229
+T LDL N + A +L + LNL N + L
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL-IQIL 162
Query: 230 QGLD-TLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL- 281
+ + L + N L+ L + + + L+L N L L+ +
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIF 220
Query: 282 ----ENLRKLELLHNRI-----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPR-------V 325
++ L L N + ++ + L +L ++ L ++ ++ +
Sbjct: 221 SSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279
Query: 326 FAHLPLLNSLELDGNHIH 343
F ++ + ++ +G IH
Sbjct: 280 FPNIQKIILVDKNGKEIH 297
Score = 45.9 bits (109), Expect = 9e-06
Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
L++I + LNL GN L L+K ++ L+L N + L
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219
Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALH-------SNA 228
+ L+L N L SL HL + L+++ + + A
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279
Query: 229 FQGLDTLEILTIFENKLS----LIEPDSFKGLEKKLKRLNLGGNELT-----RVPQTSLS 279
F + + ++ ++ + + + L K +L L + L+
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339
Query: 280 KLENLRKLELLHNRI 294
+ LR+ +
Sbjct: 340 IPDELRESIQTCKPL 354
Score = 44.3 bits (105), Expect = 4e-05
Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 53/245 (21%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
+SI + L+L N L + L + ++ L L N + L++
Sbjct: 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74
Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLN-HLLILNLNHNKISALHSNAF-QGLD 233
+T L+LS N L + L ++ + +L+L N S+ S+ F Q
Sbjct: 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 234 ----TLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL-- 281
++ L + N L LI+ + + LNL GN L L+K
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQ--ILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192
Query: 282 ---ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
++ L+L N + + L + + + + SL L
Sbjct: 193 SIPASVTSLDLSANLL------GLKSYAEL-AYIFSSIPNH------------VVSLNLC 233
Query: 339 GNHIH 343
N +H
Sbjct: 234 LNCLH 238
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 45.5 bits (108), Expect = 1e-05
Identities = 51/315 (16%), Positives = 97/315 (30%), Gaps = 63/315 (20%)
Query: 68 LCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGL-----DIRHLTIH 121
EF + + +++L+ L L + P + L + + +
Sbjct: 58 HYEFQNQRFSAEVLSSLRQ--------LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109
Query: 122 NSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI-- 174
+ L +L + + ++L L N L L L + L L +N +
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169
Query: 175 ---ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKI------ 221
A++ EG ++T L L L + + L L LN+ +N
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229
Query: 222 ---SALHSNAFQGLDTLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTR 272
A + +LE+L ++ N+LS L + ++ G ++
Sbjct: 230 ALARAAREH-----PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284
Query: 273 VPQTSLSK-LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
LS+ NL + + L L L ++ T+ P A L
Sbjct: 285 YWSVILSEVQRNLNSWDRARVQRHL----------ELLLRDLEDSRGATLNPWRKAQLLR 334
Query: 332 LNS----LELDGNHI 342
+ L
Sbjct: 335 VEGEVRALLEQLGSS 349
Score = 43.2 bits (102), Expect = 7e-05
Identities = 46/245 (18%), Positives = 75/245 (30%), Gaps = 36/245 (14%)
Query: 133 LSSIGKKLKRLNLGGNELTRVPQTSLSK-LENLRKLELLHNRI------ALIEEGDFEGK 185
L S L +NL +L +L RKL L N + L + +
Sbjct: 96 LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC 155
Query: 186 ALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKI---------SALHSNAFQGL 232
+T L LS N L V L + L+L H + + L N
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR---- 211
Query: 233 DTLEILTIFENKLSLIEPDSFKGL------EKKLKRLNLGGNELTRVPQTSLSKLENLRK 286
L+ L + N + L L+ L+L NEL+ + L +
Sbjct: 212 -QLQELNVAYNG---AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR--DLGGA 265
Query: 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
E + + EG + L L + L +L+ + T++
Sbjct: 266 AEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLN 325
Query: 347 PAAFS 351
P +
Sbjct: 326 PWRKA 330
Score = 27.8 bits (62), Expect = 5.7
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 12/91 (13%)
Query: 137 GKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS 196
G ++ G ++ LS E+ N + L DL +
Sbjct: 269 GARVVVSLTEGTAVSEYWSVILS--------EVQRNLNSWDRARVQRHLELLLRDLEDSR 320
Query: 197 L----AVVPSPALKSLNHLLILNLNHNKISA 223
+ L+ + L +
Sbjct: 321 GATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 82/415 (19%), Positives = 122/415 (29%), Gaps = 148/415 (35%)
Query: 7 TTYSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLD 66
TY V + A L L+++ GL+
Sbjct: 178 QTYHVLVGDLI-----KFSAE------TLSE--LIRTTLDAEKVFT----------QGLN 214
Query: 67 ILCEFTDNQKIQHTMTTLKSK--SGLIIFYLKLRH-NNLPKLTGF---IFFGLDIRHLTI 120
IL E+ +N L S S +I ++L H KL GF ++ T
Sbjct: 215 IL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY-LKGATG 272
Query: 121 HNSSL--AVV------EESSLSSIGKKLKRLNLGGNELTRV-PQTSLSKLENLRKLELLH 171
H+ L AV ES S+ K + L G P TSL +L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-------PSILE 325
Query: 172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL--HSNAF 229
+E EG VPSP L I NL ++ +N+
Sbjct: 326 ---DSLENN--EG---------------VPSPML------SISNLTQEQVQDYVNKTNSH 359
Query: 230 QGLDTLEILTIFENKLSLI----------EPDSFKGLEKKLKRLNLG-GNELTRVPQTSL 278
L + + I SL+ P S GL L++ G + +R+P
Sbjct: 360 --LPAGKQVEI-----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP---F 409
Query: 279 SKLENLRKL---------------ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
S+ RKL LL LI + D +++ ++ IP
Sbjct: 410 SE----RKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVK----NNVSFNAKDIQ-IP- 458
Query: 324 RVF-----------------------AHLPLL--NSLELDGNHIHTVDPAAFSGL 353
V+ LP+ + + HI P SGL
Sbjct: 459 -VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 32.3 bits (73), Expect = 0.26
Identities = 28/142 (19%), Positives = 41/142 (28%), Gaps = 56/142 (39%)
Query: 214 LNLNHNKI-------SALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLG 266
L L+H + +A A Q + F L P+ +G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQ------FNKIL----PEPTEGFA--------A 50
Query: 267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
+E T+ EL+ G F L + SLV + V
Sbjct: 51 DDE-----PTT--------PAELV---------GKF--LGYVSSLVEPSKVGQFDQ--VL 84
Query: 327 AHLPLLNSLE---LDGNHIHTV 345
L E L+GN IH +
Sbjct: 85 NLC--LTEFENCYLEGNDIHAL 104
Score = 32.3 bits (73), Expect = 0.27
Identities = 39/244 (15%), Positives = 63/244 (25%), Gaps = 87/244 (35%)
Query: 112 GLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 171
R LT+ + SL E L VP S L++
Sbjct: 3 AYSTRPLTLSHGSL----EHVLL------------------VPTASFFIASQLQE----- 35
Query: 172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQG 231
F L A P + L+ L + +S+L + G
Sbjct: 36 ---------QF----NKILPEPTEGFAADDEPT--TPAELVGKFLGY--VSSLVEPSKVG 78
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
++L L L E F E L GN+ +H
Sbjct: 79 -QFDQVL-----NLCLTE---F---ENCY----LEGND--------------------IH 102
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP---LLNSLELDGNHIHTVDPA 348
A + + + L L+ + R + R F L ++ + +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--- 159
Query: 349 AFSG 352
F G
Sbjct: 160 -FGG 162
Score = 28.1 bits (62), Expect = 5.6
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 50 HNEISPCQ--CSVKKNGLDILCEFTDNQKIQ 78
+N + Q + LD + + K+Q
Sbjct: 1846 YN-VENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 40.6 bits (95), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
+ LVL N L +PP + LP L + L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.8 bits (80), Expect = 0.012
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 282 ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
+ +L L N + + G + L L + L N R
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 32.9 bits (75), Expect = 0.055
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
L L GN LT +P L L LR L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.5 bits (74), Expect = 0.071
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
L L GN LT +P L L LR L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 31.3 bits (71), Expect = 0.18
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
T+L L+ N+L +P L +L L +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.2 bits (68), Expect = 0.51
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 162 ENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
+ +L L N + + G + AL L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.8 bits (67), Expect = 0.62
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
L L N ++AL L L + N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.6 bits (91), Expect = 0.001
Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 19/206 (9%)
Query: 91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
I + G + +D I S + V+ S + L L + G
Sbjct: 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEI--SWIEQVDLSPVLDAMPLLNNLKIKGTNN 184
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNH 210
+ + L++L + + + + L +L L +
Sbjct: 185 LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244
Query: 211 LL---------ILNLNHNKISALHSNAF---QGLDTLEILTIFENKLS----LIEPDSFK 254
L L + + + F L LE + I L+ + D
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSK 280
+ K LK +N+ N L+ + L K
Sbjct: 305 KI-KHLKFINMKYNYLSDEMKKELQK 329
Score = 37.2 bits (85), Expect = 0.006
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 33/161 (20%)
Query: 81 MTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKL 140
+ LK K + K NL L +I + +S + + S L + L
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSL--------EIISGGLPDSVVEDILGSDLPN----L 221
Query: 141 KRLNLGGNELTRVPQTSLSKLE---------NLRKLELLHNRI------ALIEEGDFEGK 185
++L L ++ NL+ L ++ +E
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL--P 279
Query: 186 ALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS 222
L +D+S L A + + + HL +N+ +N +S
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 32.6 bits (73), Expect = 0.19
Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 14/106 (13%)
Query: 259 KLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH---------N 307
LK L + L V S L NL KL L +GD N
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLE---LDGNHIHTVDPAAF 350
L L + + + + +F +L LE + +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 34.2 bits (78), Expect = 0.045
Identities = 32/143 (22%), Positives = 46/143 (32%), Gaps = 19/143 (13%)
Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
L L + + N L+ + + P +L LNL N
Sbjct: 129 QQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIP--------ELLSLNLSNN 180
Query: 269 ELTRVPQTS--LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP--- 323
L R+ S + K NL+ L L N + E D L+ L L N L
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240
Query: 324 ----RVFAHLPLLNSLELDGNHI 342
+ P L L LDG+ +
Sbjct: 241 TYISAIRERFPKL--LRLDGHEL 261
Score = 30.4 bits (68), Expect = 0.74
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 10/145 (6%)
Query: 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
ALK++N+ ++ N ++S+A E+ +L LI + G ++ L
Sbjct: 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 135
Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
L + + + L + + + +IEE + L SL L++N+L +
Sbjct: 136 GLRSDPD----LVAQNIDVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDD 187
Query: 324 --RVFAHLPLLNSLELDGNHIHTVD 346
+ P L L L GN + +
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSER 212
Score = 30.0 bits (67), Expect = 0.97
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 28/117 (23%)
Query: 53 ISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFG 112
+ + +I + T+ ++ + L L +N L +L
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPEL-LSLNLSNNRLYRLDDM---- 188
Query: 113 LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169
SS+ LK LNL GNEL S +L+ ++ L+L
Sbjct: 189 ------------------SSIVQKAPNLKILNLSGNEL-----KSERELDKIKGLKL 222
Score = 29.2 bits (65), Expect = 1.9
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
+ L+L G + + L + + + +IEE L L+LS N L +
Sbjct: 130 QALDLKGLRSDPD-LVAQNIDVVLNRRSCMAATLRIIEE---NIPELLSLNLSNNRLYRL 185
Query: 201 P--SPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPD 251
S ++ +L ILNL+ N++ + + +GL LE L + N L D
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRD 238
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.16
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 6/27 (22%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGL 256
Q L L+ L L DS L
Sbjct: 20 QALKKLQ------ASLKLYADDSAPAL 40
Score = 27.6 bits (60), Expect = 4.1
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 249 EPDSFKGLEKKLK 261
E + K L+ LK
Sbjct: 18 EKQALKKLQASLK 30
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 32.2 bits (73), Expect = 0.26
Identities = 39/239 (16%), Positives = 83/239 (34%), Gaps = 21/239 (8%)
Query: 67 ILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLA 126
L + D + + + + + F ++H+ + NS +
Sbjct: 47 SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106
Query: 127 VVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR------IALIEEG 180
V + S KL+ L+L G L+ +L+K NL +L L + +
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166
Query: 181 DFEGKALTQLDLSQ------NSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDT 234
L +L+LS + V + +++ L + N + S +
Sbjct: 167 ---CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 235 LEILTIFENKLSLIEPDSFKGLEK--KLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
L L + + +++ D F+ + L+ L+L + +L +L + L+ L
Sbjct: 224 LVHLDL--SDSVMLKNDCFQEFFQLNYLQHLSLSRC--YDIIPETLLELGEIPTLKTLQ 278
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI-
protein structure initiative, joint center for
structural G JCSG; 1.65A {Listeria innocua} SCOP:
d.369.1.1
Length = 160
Score = 31.2 bits (70), Expect = 0.28
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL------- 281
G T E++ I+++ L P+++K +K L G + + LS
Sbjct: 23 ASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGLSAASIPDVKF 82
Query: 282 --ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
E R ++ + +I+ + + ++D+ ++
Sbjct: 83 ATEQARTFGDINKEMIMIKNSGYGSIFSIDTSIIGSEG 120
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP:
d.369.1.1
Length = 153
Score = 30.7 bits (69), Expect = 0.31
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE---LTRVPQTSLSKLENLR 285
F + E + E L P+S+K +K L G + +++ +
Sbjct: 20 FTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLFGVLVLGYNFDHASVVNRTNEYK 79
Query: 286 KLELLHNRIALIEEGDFE 303
+ L + + +IE+ D+
Sbjct: 80 EHYGLTDGLVVIEDVDYF 97
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 31.3 bits (71), Expect = 0.45
Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 15/186 (8%)
Query: 177 IEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLN----HNKISALHSNAFQG 231
IE+ F+G L + + + + AL + + L + + AF
Sbjct: 115 IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKL 287
+ LE + +E + K + + +N ++ + + NL L
Sbjct: 175 GEPLETTIQVGA-MGKLEDEIMKAG-LQPRDINFL-TIEGKLDNADFKLIRDYMPNLVSL 231
Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNHIHTVD 346
++ I + F L + L + L+TI RVF++ L +LEL + ++
Sbjct: 232 DISKTNATTIPDFTFAQKKYLLKIKL-PHNLKTIGQRVFSNCGRLAGTLEL-PASVTAIE 289
Query: 347 PAAFSG 352
AF G
Sbjct: 290 FGAFMG 295
Score = 27.8 bits (62), Expect = 5.1
Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 9/156 (5%)
Query: 177 IEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDT- 234
E F EG+ L ++ + +K+ +N L + F+ +
Sbjct: 167 WEHFAFIEGEPLETTIQV-GAMGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDY 224
Query: 235 ---LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
L L I + + I +F K L ++ L N L + Q S L L
Sbjct: 225 MPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
+ IE G F G NL ++ +++ T+ +F
Sbjct: 283 ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 31.0 bits (70), Expect = 0.73
Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 16/177 (9%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-ENLRKLELLH--NRIALIEEGDFE---- 183
+++++ + LK L+L +++ V LS + L L+ + + E
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208
Query: 184 -GKALTQLDLSQN------SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE 236
L L L++ + + +P L+ L + + S A G L
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHN 292
L+ F + + P + +L LNL + L + L++L +L
Sbjct: 269 CLSGFWDAVPAYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Length = 126
Score = 28.0 bits (62), Expect = 2.4
Identities = 5/54 (9%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 173 RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALK----SLNHLLILNLNHNKIS 222
R+ I G +GK +++ + ++ + + + + + +
Sbjct: 11 RVVYINYGADKGKLAVIVNIINQNRILIDGEHIVRQVIPIRRVHLTKFQIDNVE 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 29.1 bits (65), Expect = 2.8
Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 17/176 (9%)
Query: 132 SLSSIGKKLKRLNLGGNELTRVPQTSLSK-LENLRKLELLH-NRIALIEEGDFEG----- 184
+L+ ++L+ + + +++T S+ L+NL L+ +R I + +
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431
Query: 185 ----KALTQLDLSQNSLAV---VPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTL 235
K L + + S + ++ + L + S L + +G L
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-RGCPNL 490
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
+ L + S + L+ L + G + Q + +EL+
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 28.0 bits (63), Expect = 3.9
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKL--EN--LRKLELLHNRI-----ALIEEGDFEGKALT 188
+K+ ++ G +L+++ N L+ L + N I + E +L
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLI 124
Query: 189 QLDLSQNSL------AVVPSPALKSLNHLLILNLNHNKISA 223
+L + S + + L+ LL + +
Sbjct: 125 ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 27.9 bits (62), Expect = 4.4
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 185 KALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS---------ALHSNAFQG 231
K + + L+ ++ A +++ L +LN+ N ++ +
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT---- 125
Query: 232 LDTLEILTIFENKLSLI----EPDSFKGLE--KKLKRLNLGGNE 269
++ + S++ E D +E + L R+ +
Sbjct: 126 -QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_N
Length = 134
Score = 27.2 bits (60), Expect = 4.8
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 173 RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALK----SLNHL----LILNLNHNKISAL 224
R+AL+ G G+ + +D+ + A+V +P + + L + +++
Sbjct: 11 RVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQINFKRLSLTDIKIDIKRVPKKTT 70
Query: 225 HSNAFQGLDTLE 236
A + D
Sbjct: 71 LIKAMEEADVKN 82
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL,
enterobactin, glycoprotein, pyrroli carboxylic acid,
secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A*
3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A
3t1d_A* 3by0_A*
Length = 198
Score = 27.4 bits (60), Expect = 5.8
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 25 LATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVK 61
+ L L L L L Q +P V
Sbjct: 1 MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVP 37
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 27.3 bits (60), Expect = 8.3
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Query: 208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
L + KI+ L + L LE E L ++E + K KK++
Sbjct: 97 LAQVAEQFSRAFKINELKAEVANHLAVLEKRVELEG-LKVVEIEKCKSDIKKMREELAAR 155
Query: 268 NELTRVPQTSLSK---LENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLRTIP 322
+ T P + + ++ L+ E L D + N++ +
Sbjct: 156 SSRTNCPCKYSFLDNHKKLTPRRDVPTYPKYLLSPETIEALRKPTFDVWLWEPNEMLSCL 215
Query: 323 PRVFAHLPLLNSLELD 338
++ L L+ ++
Sbjct: 216 EHMYHDLGLVRDFSIN 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.390
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,002,253
Number of extensions: 293362
Number of successful extensions: 5019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 487
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)