RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15002
(357 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 71.2 bits (173), Expect = 1e-14
Identities = 60/275 (21%), Positives = 98/275 (35%), Gaps = 59/275 (21%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
+ L+L N++T + L+NL L L++N+I+ I G F L +L L
Sbjct: 27 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86
Query: 193 SQNSLAVVPSPALKSLNHL-----------------------LILNLNHNKISALHSNAF 229
S+N L +P K+L L + L N K S + + AF
Sbjct: 87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE- 288
QG+ L + I + ++ I L L+L GN++T+V SL L NL KL
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 289 ----------------------LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
L+N + G + + L +N + I F
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262
Query: 327 A------HLPLLNSLELDGNHIHT--VDPAAFSGL 353
+ + L N + + P+ F +
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297
Score = 64.7 bits (156), Expect = 2e-12
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 9/170 (5%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
L + S L VP L +L +NKI+ + F+ L L L + NK+S
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
I P +F L KL+RL L N+L +P+ L+ LR N I + + F GL+
Sbjct: 69 KISPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLN 124
Query: 307 NLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+ + L N L++ F + L+ + + +I T+ L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 174
Score = 45.4 bits (106), Expect = 4e-06
Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 27/232 (11%)
Query: 34 LLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIF 93
L L L+ + P + + V +N + + + N Q + L +
Sbjct: 84 LYLSKNQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
+ KL+ +I + + L L+L GN++T+V
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIP--------------QGLPPSLTELHLDGNKITKV 186
Query: 154 PQTSLSKLENLRKLEL-LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
SL L NL KL L ++ A+ L +L L+ N L VP L ++
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQ 245
Query: 213 ILNLNHNKISALHSNAFQG------LDTLEILTIFENKLSL--IEPDSFKGL 256
++ L++N ISA+ SN F + +++F N + I+P +F+ +
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 66.0 bits (159), Expect = 7e-13
Identities = 58/212 (27%), Positives = 84/212 (39%), Gaps = 3/212 (1%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA--LIEEGDFEGKALTQLD 191
I +R+ L GN ++ VP S NL L L N +A
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
L V L L L+L+ + L F+GL L+ L + +N L + D
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
+F+ L L L GN ++ VP+ + L +L +L L NR+A + F L L +L
Sbjct: 148 TFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
L N L +P A L L L L+ N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 61.4 bits (147), Expect = 3e-11
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 2/168 (1%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLN-HNKISALHSNAFQGLDTLEILTIFENKL 245
++ L N ++ VP+ + ++ +L IL L+ + + ++ +L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
++P +F GL +L L+L L + L L+ L L N + + + F L
Sbjct: 94 RSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
NL L L N++ ++P R F L L+ L L N + V P AF L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Score = 54.0 bits (128), Expect = 7e-09
Identities = 59/289 (20%), Positives = 115/289 (39%), Gaps = 17/289 (5%)
Query: 47 CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLT 106
CP C C + + C Q + + + L N + +
Sbjct: 2 CP-----GACVCY-NEPKVTTSCPQQGLQAVPVGIPAA-------SQRIFLHGNRISHVP 48
Query: 107 GFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLR 165
F ++ L +H++ LA ++ ++ + + + +L V + L L
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 166 KLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
L L + + G F G AL L L N+L +P + L +L L L+ N+IS++
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENL 284
AF+GL +L+ L + +N+++ + P +F+ L + + N L+ +P +L+ L L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRAL 227
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
+ L L N + + L + +++ P+ A L
Sbjct: 228 QYLRLNDNPW-VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Score = 53.7 bits (127), Expect = 9e-09
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQ----NS 196
+ L VP + +++ L NRI+ + F L +
Sbjct: 14 VTTSCPQQGLQAVPV-GIPA--ASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVL 68
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
+ + + ++ ++ ++ F GL L L + L + P F+G
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG- 127
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
L+ L L N L +P + L NL L L NRI+ + E F GLH+LD L+L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
++ + P F L L +L L N++ +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 65.4 bits (158), Expect = 2e-12
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 159 SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218
+KL NL L +N+I+ I L +L L+ N L + + L SL +L L+L +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 250
Query: 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEP-------------------DSFKGLEKK 259
N+IS L GL L L + N++S I P S K
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
L L L N ++ + +S L L++L +N+++ + L N++ L HNQ+
Sbjct: 309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQIS 364
Query: 320 TIPPRVFAHLPLLNSLELDGN 340
+ P A+L + L L+
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383
Score = 43.5 bits (101), Expect = 2e-05
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
I D+ L +K+ + LG +T S + L+ + L+ I I+ E L+N
Sbjct: 15 IFTDT--ALAEKM-KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNN 67
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
L + ++NQL I P +L L + ++ N I
Sbjct: 68 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101
Score = 38.8 bits (89), Expect = 7e-04
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 79 HTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG- 137
+ ++ + +GL + N + I ++ +LT++ +++ S +S +
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-----SDISPVSS 327
Query: 138 -KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQN 195
KL+RL N+++ V SL+ L N+ L HN+I+ L + +TQL L+
Sbjct: 328 LTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQ 383
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 29/101 (28%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+ + LG +T S + L+ + L+ I I+
Sbjct: 22 AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID------------------- 60
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEIL 238
++ LN+L +N ++N+++ + + L L +
Sbjct: 61 ------GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDI 93
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 50.9 bits (120), Expect = 6e-08
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 4/186 (2%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193
+ K L+L N L +L L +L L + + +
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDL 84
Query: 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253
++ ++L L +L+++ N++++L A +GL L+ L + N+L + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
K K +L N LT +P L+ LENL L L N + I +G F G H L L
Sbjct: 145 TPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFL 202
Query: 314 AHNQLR 319
N
Sbjct: 203 HGNPWL 208
Score = 48.6 bits (114), Expect = 4e-07
Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 6/198 (3%)
Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
P +SK+ + ++ + + K T L LS+N L L L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
LNL+ +++ L L L + N+L + + ++ N LT +
Sbjct: 60 LNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLTSL 115
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
P +L L L++L L N + + G L+ L LA+N L +P + L L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 334 SLELDGNHIHTVDPAAFS 351
+L L N ++T+ F
Sbjct: 176 TLLLQENSLYTIPKGFFG 193
Score = 29.7 bits (65), Expect = 0.43
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 301 DFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + + + L +PP + L L N ++T A
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPY 54
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 46.6 bits (109), Expect = 1e-06
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 20/213 (9%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
++ G + +T + + L+ + L + IE + L L+L N +
Sbjct: 19 ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQYL-NNLIGLELKDNQI 75
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + L L+ N K + + T + L + + L
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 258 KKLKRL-------------NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
L ++ L T L+ L L L+ N+I+ I
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L NL + L +NQ+ + P A+ L + L
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Score = 35.0 bits (79), Expect = 0.008
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
+ L L L +NK+S I P L L ++L N+++ V
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL-PNLIEVHLKNNQISDVS-- 211
Query: 277 SLSKLENLRKLELLH 291
L+ NL + L +
Sbjct: 212 PLANTSNLFIVTLTN 226
Score = 29.6 bits (65), Expect = 0.41
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 131 SSLSSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 171
S +S + L ++L N+++ V L+ NL + L +
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226
Score = 28.1 bits (61), Expect = 1.3
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 158 LSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
L+ L L L+ N+I+ I L ++ L N ++ V L + ++L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 217 NH 218
+
Sbjct: 225 TN 226
Score = 27.3 bits (59), Expect = 2.3
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLS 193
KL L N+++ + L+ L NL ++ L +N+I+ + L + L+
Sbjct: 174 KLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 47.1 bits (110), Expect = 1e-06
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
L+ LN+ N+L +P + L +L N +A + E NL L + +N
Sbjct: 284 PSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNP 335
Query: 318 LRTIPPRVFAHLPLLNSLELD 338
LR P + L ++
Sbjct: 336 LREFPD----IPESVEDLRMN 352
Score = 44.8 bits (104), Expect = 9e-06
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
L+ LN+ N+L +P + L +L N +A + E + L QL + N L
Sbjct: 284 PSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL 336
Query: 198 AVVPSPALKSLNHLLILN 215
P +S+ L + +
Sbjct: 337 REFPD-IPESVEDLRMNS 353
Score = 44.0 bits (102), Expect = 1e-05
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
N+ + L LN+++NK+ L + LE L N L+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA----- 317
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR 285
L + LK+L++ N L P +E+LR
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPD-IPESVEDLR 350
Score = 43.3 bits (100), Expect = 3e-05
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
N S + +LE L + NKL + P +L+RL N L VP
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPP----RLERLIASFNHLAEVP 320
Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
+ +NL++L + +N + + E + +L
Sbjct: 321 EL----PQNLKQLHVEYNPLREFPDI-PESVEDL 349
Score = 39.0 bits (89), Expect = 7e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKS 207
N + ++ +L +L + +N++ + L +L S N LA VP
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPE----L 322
Query: 208 LNHLLILNLNHNKISALHS 226
+L L++ +N +
Sbjct: 323 PQNLKQLHVEYNPLREFPD 341
Score = 37.9 bits (86), Expect = 0.001
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
L+++ L L L+ +P+ +L L N + + E +L SL++ +
Sbjct: 36 LDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP----ELPQSLKSLLVDN 87
Query: 316 NQLRTIP 322
N L+ +
Sbjct: 88 NNLKALS 94
Score = 37.9 bits (86), Expect = 0.001
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
L + +N L +L + L + L + + + + LK+L++ N L
Sbjct: 288 ELNVSNNKLIELPALPP---RLERLIASFNHL-----AEVPELPQNLKQLHVEYNPLREF 339
Query: 154 PQTSLSKLENLR 165
P +E+LR
Sbjct: 340 PD-IPESVEDLR 350
Score = 34.8 bits (78), Expect = 0.011
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
++ L L L+ +P+ +L L N + + E ++L L + N+L
Sbjct: 38 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNL 90
Score = 34.4 bits (77), Expect = 0.020
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
N + + +L+ L +++N+L +P A P L L NH+ V P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-PE 321
Query: 349 AFSGLE 354
L+
Sbjct: 322 LPQNLK 327
Score = 34.0 bits (76), Expect = 0.024
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
+ +L+L+ L+ +P HL L + N ++ L +L+ L + N
Sbjct: 38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN 89
Query: 245 L 245
L
Sbjct: 90 L 90
Score = 31.7 bits (70), Expect = 0.12
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
+LEL + ++ + E +L+SLV + N L +P L SL +D N++
Sbjct: 39 QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNL 90
Query: 343 HTV 345
+
Sbjct: 91 KAL 93
Score = 31.7 bits (70), Expect = 0.13
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 163 NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
+LEL + ++ + E L L S NSL +P L L +++N +
Sbjct: 39 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLK 91
Query: 223 ALH 225
AL
Sbjct: 92 ALS 94
Score = 30.9 bits (68), Expect = 0.22
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
L ++N L SSL + L+ L N LT +P ++L+ L + +N +
Sbjct: 40 AHELELNNLGL-----SSLPELPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNL 90
Score = 29.0 bits (63), Expect = 0.87
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
L L + L ++P P L SL N + + P L+
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-PELPQSLK 81
Score = 28.6 bits (62), Expect = 1.2
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
L + LS + P+ L+ L N LT +P ++L+ L + +N +
Sbjct: 40 AHELELNNLGLSSL-PELPP----HLESLVASCNSLTELP----ELPQSLKSLLVDNNNL 90
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 42.2 bits (98), Expect = 2e-05
Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 2/134 (1%)
Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
+ R+L+L +I +IE +D S N + + L L L +
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLV 70
Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
N+N+I + Q L L L + N L + K L L + N +T
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 277 SLSKLENLRKLELL 290
L + + ++ +L
Sbjct: 131 RLYVIYKVPQVRVL 144
Score = 35.7 bits (81), Expect = 0.003
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
+ R+L+L +I +I E L D++ + N++R + F L L +L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 69
Query: 337 LDGNHIHTVDP 347
++ N I +
Sbjct: 70 VNNNRICRIGE 80
Score = 33.8 bits (76), Expect = 0.012
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
+ + L+L KI + N LD + + +N++ ++ ++LK
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLL---RRLK 66
Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-LHNLDSLVLAHNQLRT 320
L + N + R+ + L +L +L L +N + + + D L +L L + N +
Sbjct: 67 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126
Query: 321 IP---PRVFAHLPLLNSLELDGNHI 342
V +P + LD +
Sbjct: 127 KKHYRLYVIYKVPQVR--VLDFQKV 149
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 42.6 bits (98), Expect = 3e-05
Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 4/208 (1%)
Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR----IALIEEGDFEGKALTQ 189
S + + L +L + + + S +L K+E+ N I + +
Sbjct: 25 SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
++ + N L + P N +L N + L + + + IE
Sbjct: 85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
+SF GL + L L N + + + + + +N + + F G
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204
Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L ++ ++ ++P +L L +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 40.7 bits (93), Expect = 1e-04
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
+P L++ RI + E L L + L+ +P
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
Score = 39.1 bits (89), Expect = 4e-04
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
L LN N I +H+ AF G E+ N L + D F G L++ + +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIHSL 216
Query: 274 PQTSLSKLENLRKLELLHNR 293
P L L+ LR + +
Sbjct: 217 PSYGLENLKKLRARSTYNLK 236
Score = 39.1 bits (89), Expect = 4e-04
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
+P+ + +IL+++ +I +L S + L L + + K
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 38.7 bits (88), Expect = 6e-04
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
LD+S+ + +PS L++L L + + K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 37.2 bits (84), Expect = 0.002
Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 7/216 (3%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDL----SQNSLA 198
+++T +P N +L + ++ +I++G F G + +
Sbjct: 13 FLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ H + + +N + + +L L + L+K
Sbjct: 70 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
L + N T + + L L N I I F G + + +N L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
+P VF L++ IH++ L+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225
Score = 35.3 bits (79), Expect = 0.008
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
L++ + +P L L+ LR + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 33.7 bits (75), Expect = 0.020
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
++ + +PS ++ L K+ + AF G
Sbjct: 11 RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGF 52
Score = 31.8 bits (70), Expect = 0.090
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLD-LSQNSLAVVPS 202
+P L++ RI + E L +L S +L +P+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLEN--LKKLRARSTYNLKKLPT 240
Score = 30.3 bits (66), Expect = 0.30
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ + +++ IP + + L + + AFSG
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGF 52
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 39.7 bits (92), Expect = 7e-05
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 28/150 (18%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
+ L+L +LT + L +L + L+L HNR+ + + L L S N+L V
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
+L L L L +N++ +L
Sbjct: 59 DGV--ANLPRLQELLLCNNRLQ-----------------------QSAAIQPLVSC-PRL 92
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELL 290
LNL GN L + E L + +
Sbjct: 93 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 38.5 bits (89), Expect = 2e-04
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 32/149 (21%)
Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
L L+ L V+ L+ L + L+L+HN++ AL L L L + + + +E
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56
Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
+L+ L L N L + L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSA-----------------------AIQPLVSCPRLV 93
Query: 310 SLVLAHNQLRTIP---PRVFAHLPLLNSL 335
L L N L R+ LP ++S+
Sbjct: 94 LLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 35.8 bits (82), Expect = 0.002
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 26/109 (23%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD----------- 309
+ L+L +LT + L +L + L+L HNR+ + L L+
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 310 -----------SLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVD 346
L+L +N+L+ + P L L L GN + +
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 25.4 bits (55), Expect = 6.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
L LAH L + L L+ L+L N + + PA
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA 38
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 41.5 bits (95), Expect = 1e-04
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 187 LTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS-----ALHSNAFQGLDTLEI 237
L L L+ + + L + + L L+L++N + L + Q LE
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRL 263
L +++ S D + LEK L
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSL 456
Score = 39.2 bits (89), Expect = 6e-04
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 140 LKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRI-----ALIEEGDFEGKALTQLDLS 193
++ L++ EL+ L L+ + + L + I AL +L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 194 QNSL----AVVPSPALKSLN-HLLILNLNHN 219
N L L++ + + L+L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 38.0 bits (86), Expect = 0.001
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 205 LKSLNHLLILNLNHNKISALH----SNAFQGLDTLEILTIFENKLSLIEP----DSFKGL 256
+ + L +L L +S + +L L + N L +S +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 257 EKKLKRLNLGGNELTRVPQTSLSKL-ENLRKLELL 290
L++L L + + L L ++ L ++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 36.5 bits (82), Expect = 0.005
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 138 KKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRI------ALIEEGDFEGKAL 187
L+ L L +++ +L +LR+L+L +N + L+E G L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 188 TQLDLSQNSLAVVPSPALKSL----NHLLIL 214
QL L + L++L L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 35.7 bits (80), Expect = 0.007
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 260 LKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGD----FEGLHNLDSLVLA 314
++ L++ EL+ L L+ + + L + D L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 315 HNQLRTIPPRVFAHLPLLNSLEL 337
N+L + S ++
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKI 86
Score = 33.4 bits (74), Expect = 0.035
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 258 KKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRI-----ALIEEGDFEGLHNL 308
L+ L L +++ +L +LR+L+L +N + + E + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLN 333
+ LVL L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 31.9 bits (70), Expect = 0.13
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELL 290
++ L I +LS L ++ + + L LT + ++L L +L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
N + GD L L +++ +
Sbjct: 64 SNEL-----GDVGVHCVLQGLQTPSCKIQKL 89
Score = 26.9 bits (57), Expect = 4.4
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 307 NLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
++ SL + +L + L + LD + S
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS 48
Score = 26.5 bits (56), Expect = 5.5
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 342
+G + L L LA + A L L+L N +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 38.3 bits (88), Expect = 4e-04
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 158 LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVP--SPALKSLNHLLILN 215
L L + A + + L L+LS N L + S ++ +L ILN
Sbjct: 38 LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97
Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
L+ N++ + LE L + N LS D + +R
Sbjct: 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145
Score = 34.4 bits (78), Expect = 0.009
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 14/154 (9%)
Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
+L + + + L+ + + + +L + + +
Sbjct: 3 ELKPEQVEQLKL-IMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRI 59
Query: 251 DSFKGLEKKLKRLNLGGNELTRVP--QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
+L LNL N L R+ + + K NL+ L L N + E D L
Sbjct: 60 IEEN--IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117
Query: 309 DSLVLAHNQLRTIPP-------RVFAHLPLLNSL 335
+ L L N L + P L L
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Score = 25.9 bits (56), Expect = 6.5
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
L ++ ++ +SK + + L + D + L +
Sbjct: 3 ELKPEQVEQLKLI-MSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMA-ATLR 58
Query: 324 RVFAHLPLLNSLELDGNHIHTVDP 347
+ ++P L SL L N ++ +D
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDD 82
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 37.4 bits (85), Expect = 0.002
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNR 293
N++ P L K L LN+ N L +P L+ +N+
Sbjct: 253 NNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302
Score = 34.7 bits (78), Expect = 0.012
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
+L N + L++L+ L L + N + I + L D A+N+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307
Query: 323 P 323
P
Sbjct: 308 P 308
Score = 34.3 bits (77), Expect = 0.016
Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 26/242 (10%)
Query: 132 SLSSIGKKLKRLNLGGNELTRVPQ--TSLSKLENLRKLEL--LHNRIALIEEGDFEGKAL 187
+ ++ L+L G L + +SL+ L L L + ++N + I + L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
L ++ +++ L + L+ L+ ++N +S + L L +T N++S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH- 306
PDS+ K + + N LT + + L + +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 307 ---------------------NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
NL+ L L +N++ P+ L L+SL + N++
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 346 DP 347
P
Sbjct: 284 IP 285
Score = 31.3 bits (69), Expect = 0.16
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
+L +N+I L L L + N L P G ++ N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANN 301
Score = 31.3 bits (69), Expect = 0.18
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
DL N + L L L LN++ N + L ++ NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKC 303
Score = 30.1 bits (66), Expect = 0.40
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 138 KKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNR 173
K L LN+ N L +P L+ +N+
Sbjct: 268 KFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302
Score = 28.6 bits (62), Expect = 1.1
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRI--ALIEEGDFEGKALTQLDLSQNSL 197
+L N + L++L+ L L + N + + + G+ + + N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL--QRFDVSAYANNKC 303
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 36.7 bits (83), Expect = 0.002
Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 10/185 (5%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA 198
++ G L +P+ + +L L N + I G L +L+L +N L
Sbjct: 11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
+ A + +H+ L L NKI + + F GL L+ L +++N++S + P SF+ L
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
++ + L R + + ++ L H++
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK-----VRDVQIKDLPHSEF 182
Query: 319 RTIPP 323
+
Sbjct: 183 KCSSE 187
Score = 35.2 bits (79), Expect = 0.005
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
++ + + + L + +N+L I D G L +L L N+LT +
Sbjct: 13 VDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
+ ++++L+L N+I I F GLH L +L L NQ+ + P F HL L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 334 SLELDGNHIHTVDP 347
SL L N +
Sbjct: 130 SLNLASNPFNCNCH 143
Score = 31.7 bits (70), Expect = 0.092
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 254 KGLEKKLKRLNLGGNELTR-VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV 312
+ + L L NEL R +L +L KLEL N++ IE FEG ++ L
Sbjct: 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
L N+++ I ++F L L +L L N I V P +F
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.8 bits (81), Expect = 0.004
Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 16/198 (8%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
+ + LG +T S + L+ + L+ I I +G LTQ++ S N L
Sbjct: 18 AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 74
Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
+ + +++N N +N + L + LE
Sbjct: 75 TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134
Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
++ L+ + + + L L+ L ++ N+
Sbjct: 135 LSSNTISDISALSGLTSLQQLN-----------FSSNQVTDLKPLANLTTLERLDISSNK 183
Query: 318 LRTIPPRVFAHLPLLNSL 335
+ I A L L SL
Sbjct: 184 VSDISV--LAKLTNLESL 199
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.8 bits (81), Expect = 0.004
Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 25/210 (11%)
Query: 147 GNELTRVPQT-----SLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVV 200
G+E VP S K L + + + + ++ Q+ + + + V
Sbjct: 4 GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSV 61
Query: 201 PSPALKSLNHLLILNLNHNKIS-------------ALHSNAFQGLDTLEILTIFENKLSL 247
++ L ++ L LN NK++ + LSL
Sbjct: 62 Q--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119
Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
+ L + + GL
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179
Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
L +L L+ N + + A L L+ LEL
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
Score = 35.4 bits (80), Expect = 0.005
Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 24/190 (12%)
Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
I+ S V ++ L+S + ++ +++ V + L N+ KL L N++
Sbjct: 27 IKDNLKKKSVTDAVTQNELNS----IDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL 80
Query: 175 ALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL---------- 224
I+ + LK L L + + + I+ L
Sbjct: 81 TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140
Query: 225 -----HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
++ ++ T+ + + GL KL+ L L N ++ + +L+
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL-TKLQNLYLSKNHISDLR--ALA 197
Query: 280 KLENLRKLEL 289
L+NL LEL
Sbjct: 198 GLKNLDVLEL 207
Score = 33.4 bits (75), Expect = 0.022
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 267 GNELTRVPQT-----SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
G+E VP S K L + + L+++D ++ ++ ++++
Sbjct: 4 GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV 61
Query: 322 PPRVFAHLPLLNSLELDGNHIH 343
+LP + L L+GN +
Sbjct: 62 QG--IQYLPNVTKLFLNGNKLT 81
Score = 30.4 bits (67), Expect = 0.25
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241
L L L L L+ N IS L A GL L++L +F
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 35.6 bits (80), Expect = 0.007
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 181 DFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH----SNAFQGLDTLE 236
EGK+L ++ V + L + + + L+ N I S LE
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62
Query: 237 ILTIFENKLSLIEPD 251
I + ++ +
Sbjct: 63 IAEFSDIFTGRVKDE 77
Score = 34.9 bits (78), Expect = 0.014
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-----ALIEEGDFEGK 185
+ S GK LK + + V L + ++++++ L N I + E K
Sbjct: 1 ARFSIEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59
Query: 186 ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI 221
L + S V ++L LL L K+
Sbjct: 60 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95
Score = 30.2 bits (66), Expect = 0.33
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 138 KKLKRLNLGGNELTR-----VPQTSLSKLENLRKLELLHNRI 174
L+ L L NE+ + K+ +L LEL NR
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Score = 30.2 bits (66), Expect = 0.33
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 258 KKLKRLNLGGNELTR-----VPQTSLSKLENLRKLELLHNRI 294
L+ L L NE+ + K+ +L LEL NR
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Score = 30.2 bits (66), Expect = 0.38
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 294 IALIEEGDFEGLHNLDSLVLAHNQL-----RTIPPRVFAHLPLLNSLELDGNHI 342
A+++ L +L L +N++ RT+ + +P L LEL+GN
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Score = 29.1 bits (63), Expect = 0.91
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 258 KKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
+K + L GN + R +++ ++L E +++ E L L +L
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90
Query: 314 AHNQLRTIPPRVFAH 328
+L T+ A
Sbjct: 91 KCPKLHTVRLSDNAF 105
Score = 28.7 bits (62), Expect = 1.1
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 187 LTQLDLSQNSL-----AVVPSPALKSLNHLLILNLNHNKIS 222
L L L N + + + + + LL L LN N+ S
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 27.9 bits (60), Expect = 2.0
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 10/146 (6%)
Query: 38 CCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKL 97
L Q+ + + + L I + N + L S G
Sbjct: 208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 267
Query: 98 RHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTS 157
L L +++ I ++ ++ + L L L GN +
Sbjct: 268 SKLENIGLQT-----LRLQYNEIELDAVRTLKTVIDEKM-PDLLFLELNGNRFSEEDDV- 320
Query: 158 LSKLENLRKLELLHNRIALIEEGDFE 183
++ +R++ R L E D E
Sbjct: 321 ---VDEIREVFSTRGRGELDELDDME 343
Score = 27.9 bits (60), Expect = 2.0
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 215 NLNHNKISA------LHSNAFQGLDTLEILTIFENKLSLIE----PDSFKGLEKKLKRLN 264
LN +SA + + + L+ L + N++ L L L
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 265 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303
L GN + ++ +R++ R L E D E
Sbjct: 309 LNGNRFSEEDDV----VDEIREVFSTRGRGELDELDDME 343
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 31.6 bits (70), Expect = 0.11
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
+ L+L G L L + + + F + +DLS + + V
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 201 PSPA-LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
L + L L+L ++S N L L +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105
Score = 26.2 bits (56), Expect = 7.1
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 4/131 (3%)
Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT-R 272
L+L LH + L + ++ + + +P + +++ ++L + +
Sbjct: 5 LDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
LS+ L+ L L R++ NL L L+ +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 333 NSLELDGNHIH 343
EL+ +
Sbjct: 122 RLDELNLSWCF 132
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 30.1 bits (66), Expect = 0.21
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
L + G E + L + L L LR L ++ +
Sbjct: 8 HGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
+ + F L L L+ N L ++ + L L L GN +H
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLH 116
Score = 27.8 bits (60), Expect = 1.5
Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 27/168 (16%)
Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
+ L +++ L +L L + + L
Sbjct: 10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQ-----------------------QHLQ 45
Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
+E +GL +L+ L + + L V + L +L L N + + +GL
Sbjct: 46 HLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104
Query: 307 NLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
+ VL+ N L + R + + + +
Sbjct: 105 LQEL-VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 30.0 bits (66), Expect = 0.34
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 250 PDSFKGLEKK-------LKRLNLGGN--ELTRVPQTSLSKLENLRKLELLHNRIALIEEG 300
D+ + E++ +++ L G + ++ +LS L+ + L L N I I
Sbjct: 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-- 64
Query: 301 DFEGLHNLDSLVLAHNQ 317
G+ NL L L N
Sbjct: 65 SLSGMENLRILSLGRNL 81
Score = 27.3 bits (59), Expect = 2.4
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 17/161 (10%)
Query: 139 KLKRLNLGGN--ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS 196
+ +++ L G + ++ +LS L+ + L L N I I G + L +
Sbjct: 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSG--MENLRILSLG 78
Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
++ + L + + + L L +L + NK++
Sbjct: 79 RNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 257 EKKLKRLNLGGNELTRVP----------QTSLSKLENLRKL 287
KL+ L L GN L + +L NL+KL
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918
{Listeria innocua [TaxId: 1642]}
Length = 158
Score = 26.6 bits (58), Expect = 3.2
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
T E++ I+++ L P+++K +K L G + + LS ++
Sbjct: 27 TPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGLSAASI---PDVKFAT 83
Query: 294 IALIEEGDFE 303
GD
Sbjct: 84 EQARTFGDIN 93
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 26.8 bits (58), Expect = 3.6
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 145 LGGNELTRVPQTSLSKLENLRKLE-LLHNRIALIE 178
+G + L ++ LS E + + +L +
Sbjct: 180 VGWDVLLKLLLGRLSLAEVEARAQRILGVEARALV 214
Score = 26.8 bits (58), Expect = 3.6
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 265 LGGNELTRVPQTSLSKLENLRKLE-LLHNRIALIE 298
+G + L ++ LS E + + +L +
Sbjct: 180 VGWDVLLKLLLGRLSLAEVEARAQRILGVEARALV 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.390
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,196,961
Number of extensions: 54111
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 138
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)