BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15003
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
Length = 125
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 18 VTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEIN 77
+ P S W R +F+ C+ED K+ +N +K++L F +GG++ H I + I+
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 78 AEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKV 119
S+ +R+I ++K + ++ WP LTKE+ K +WL V
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQS-WPRLTKERAKLNWLSV 101
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 179 VTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEIN 238
+ P S W R +F+ C+ED K+ +N +K++L F +GG++ H I + I+
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 239 AEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKV 280
S+ +R+I ++K + ++ WP LTKE+ K +WL V
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQS-WPRLTKERAKLNWLSV 101
>pdb|2CG9|X Chain X, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|Y Chain Y, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 134
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 16 DKVTPPSVAWAQRNHC-------IFLTICLEDCKNPTINLDKNQLYFDG-----IGGTEK 63
DKV P VAWAQR+ + +T+ + DC P + + + + +G
Sbjct: 2 DKVINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENV 61
Query: 64 KHHQVTIPFYKEINAEKSQTFVRERNIEIL-IKKTDDDKTYWPHLTKEKNKYHWLK 118
H+Q+ I YKEI EK+ V L + K D + YWP LTKEK KY ++K
Sbjct: 62 HHYQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVKYPYIK 117
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 179 VTPPSVAWAQRNHC-------IFLTICLEDCKNPTINLDKNQLYFDG-----IGGTEKKH 226
V P VAWAQR+ + +T+ + DC P + + + + +G H
Sbjct: 4 VINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHH 63
Query: 227 HQVTIPFYKEINAEKSQTFVRERNIEIL-IKKTDDDKTYWPHLTKEKNKYHWLK 279
+Q+ I YKEI EK+ V L + K D + YWP LTKEK KY ++K
Sbjct: 64 YQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVKYPYIK 117
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
Thaliana
Length = 150
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 21 PSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEK 80
P V WAQR+ ++LT+ L D K+ ++ + L+ G + + + ++ Y +I E
Sbjct: 5 PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64
Query: 81 SQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK 113
+ V RNI I+K +++++W L K + K
Sbjct: 65 RKN-VGLRNIIFSIQK--EERSWWTRLLKSEEK 94
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 182 PSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEK 241
P V WAQR+ ++LT+ L D K+ ++ + L+ G + + + ++ Y +I E
Sbjct: 5 PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64
Query: 242 SQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK 274
+ V RNI I+K +++++W L K + K
Sbjct: 65 RKN-VGLRNIIFSIQK--EERSWWTRLLKSEEK 94
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 51 NQLYFDGIGGTEKK-------HHQVTIPFYKEINAEKSQTFVRE 87
+L ++GIG TEK+ +H T+ KE+ E+S F+R+
Sbjct: 235 GELIYNGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRK 278
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 212 NQLYFDGIGGTEKK-------HHQVTIPFYKEINAEKSQTFVRE 248
+L ++GIG TEK+ +H T+ KE+ E+S F+R+
Sbjct: 235 GELIYNGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRK 278
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 51 NQLYFDGIGGTEKK-------HHQVTIPFYKEINAEKSQTFVRE 87
+L ++GIG TEK+ +H T+ KE+ E+S F+R+
Sbjct: 237 GELIYNGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRK 280
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 212 NQLYFDGIGGTEKK-------HHQVTIPFYKEINAEKSQTFVRE 248
+L ++GIG TEK+ +H T+ KE+ E+S F+R+
Sbjct: 237 GELIYNGIGSTEKELLWLENSYHVATLDNDKELILERSLAFIRK 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,945
Number of Sequences: 62578
Number of extensions: 337015
Number of successful extensions: 758
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 12
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)