Query psy15003
Match_columns 317
No_of_seqs 297 out of 1243
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:59:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158|consensus 100.0 2.3E-34 5E-39 247.3 9.3 118 16-134 3-120 (180)
2 cd00237 p23 p23 binds heat sho 100.0 5.9E-33 1.3E-37 225.7 13.1 106 20-127 1-106 (106)
3 cd00237 p23 p23 binds heat sho 100.0 1.8E-30 3.9E-35 211.1 13.1 106 181-288 1-106 (106)
4 KOG3158|consensus 100.0 2.4E-30 5.1E-35 222.6 8.9 116 179-295 5-120 (180)
5 cd06465 p23_hB-ind1_like p23_l 99.9 4.6E-27 1E-31 191.3 13.3 108 182-290 1-108 (108)
6 cd06465 p23_hB-ind1_like p23_l 99.9 9E-27 2E-31 189.6 13.5 108 21-129 1-108 (108)
7 cd06488 p23_melusin_like p23_l 99.8 9.7E-20 2.1E-24 142.9 11.2 85 21-108 1-87 (87)
8 cd06489 p23_CS_hSgt1_like p23_ 99.8 6.6E-20 1.4E-24 142.5 9.7 82 24-108 1-84 (84)
9 cd06489 p23_CS_hSgt1_like p23_ 99.8 1.3E-19 2.7E-24 140.9 9.5 82 185-269 1-84 (84)
10 cd06488 p23_melusin_like p23_l 99.8 2.4E-19 5.2E-24 140.6 10.9 85 182-269 1-87 (87)
11 PLN03088 SGT1, suppressor of 99.8 4.4E-19 9.6E-24 172.2 9.2 108 181-291 156-285 (356)
12 PLN03088 SGT1, suppressor of 99.8 2.1E-18 4.5E-23 167.6 10.4 106 20-128 156-283 (356)
13 cd06468 p23_CacyBP p23_like do 99.7 2.7E-17 5.9E-22 129.6 10.7 84 183-269 3-92 (92)
14 KOG1309|consensus 99.7 5.5E-18 1.2E-22 147.1 6.2 112 181-295 3-132 (196)
15 cd06468 p23_CacyBP p23_like do 99.7 4.7E-17 1E-21 128.2 10.8 84 22-108 3-92 (92)
16 cd06466 p23_CS_SGT1_like p23_l 99.7 2.9E-17 6.4E-22 126.7 9.1 82 185-269 1-84 (84)
17 cd06466 p23_CS_SGT1_like p23_l 99.7 3.5E-17 7.5E-22 126.3 9.3 82 24-108 1-84 (84)
18 KOG1309|consensus 99.7 9.5E-17 2.1E-21 139.4 6.1 112 20-134 3-132 (196)
19 PF04969 CS: CS domain; Inter 99.6 2.6E-15 5.6E-20 113.5 11.6 75 182-257 1-79 (79)
20 PF04969 CS: CS domain; Inter 99.6 7.1E-15 1.5E-19 111.1 11.5 75 21-96 1-79 (79)
21 cd06463 p23_like Proteins cont 99.6 4.4E-15 9.5E-20 113.0 10.1 82 186-269 1-84 (84)
22 cd06469 p23_DYX1C1_like p23_li 99.6 3.2E-15 7E-20 113.9 9.3 76 186-269 1-78 (78)
23 cd06469 p23_DYX1C1_like p23_li 99.6 4E-15 8.6E-20 113.4 9.6 76 25-108 1-78 (78)
24 cd06493 p23_NUDCD1_like p23_NU 99.6 4.5E-15 9.7E-20 115.8 9.5 81 184-269 1-85 (85)
25 cd06467 p23_NUDC_like p23_like 99.6 5E-15 1.1E-19 114.6 9.3 81 184-269 1-85 (85)
26 cd06463 p23_like Proteins cont 99.6 7.4E-15 1.6E-19 111.8 10.1 82 25-108 1-84 (84)
27 cd06492 p23_mNUDC_like p23-lik 99.5 3.6E-14 7.8E-19 111.5 9.0 81 184-269 1-87 (87)
28 cd06467 p23_NUDC_like p23_like 99.5 4.1E-14 8.9E-19 109.5 9.2 81 23-108 1-85 (85)
29 KOG1667|consensus 99.5 2E-14 4.3E-19 130.8 8.2 109 161-271 188-304 (320)
30 cd06495 p23_NUDCD3_like p23-li 99.5 1.2E-13 2.5E-18 111.7 11.8 93 180-275 3-100 (102)
31 cd06490 p23_NCB5OR p23_like do 99.5 8.4E-14 1.8E-18 109.3 10.0 81 23-108 1-87 (87)
32 cd06490 p23_NCB5OR p23_like do 99.5 8.1E-14 1.8E-18 109.4 9.6 80 184-268 1-86 (87)
33 cd06494 p23_NUDCD2_like p23-li 99.5 1.6E-13 3.5E-18 109.1 9.7 84 181-269 5-93 (93)
34 cd06493 p23_NUDCD1_like p23_NU 99.5 2.2E-13 4.7E-18 106.2 10.0 81 23-108 1-85 (85)
35 KOG1667|consensus 99.4 3.8E-13 8.3E-18 122.5 8.2 91 18-110 212-304 (320)
36 KOG2265|consensus 99.3 7.9E-12 1.7E-16 108.5 7.6 98 181-282 18-119 (179)
37 cd06492 p23_mNUDC_like p23-lik 99.2 1.5E-10 3.2E-15 91.0 9.4 81 23-108 1-87 (87)
38 cd06494 p23_NUDCD2_like p23-li 99.1 4.7E-10 1E-14 89.3 10.2 85 19-108 4-93 (93)
39 cd06495 p23_NUDCD3_like p23-li 98.9 1.1E-08 2.3E-13 82.8 11.1 90 19-111 3-97 (102)
40 KOG3260|consensus 98.9 1.5E-09 3.3E-14 94.8 5.8 84 23-109 77-163 (224)
41 cd00298 ACD_sHsps_p23-like Thi 98.9 1E-08 2.2E-13 75.9 8.7 72 186-257 1-80 (80)
42 cd00298 ACD_sHsps_p23-like Thi 98.9 9.3E-09 2E-13 76.1 8.5 72 25-96 1-80 (80)
43 COG5091 SGT1 Suppressor of G2 98.6 1.3E-08 2.8E-13 94.4 2.3 117 178-296 173-309 (368)
44 COG5091 SGT1 Suppressor of G2 98.5 8.9E-08 1.9E-12 88.9 3.0 113 20-134 176-308 (368)
45 KOG3260|consensus 98.4 3.2E-07 7E-12 80.4 5.7 84 183-269 76-162 (224)
46 KOG2265|consensus 97.9 3.2E-05 6.9E-10 67.7 7.5 92 16-111 14-109 (179)
47 COG0071 IbpA Molecular chapero 97.5 0.0012 2.7E-08 56.4 11.0 81 179-259 38-134 (146)
48 KOG4379|consensus 97.4 0.0004 8.7E-09 68.7 6.7 89 179-273 287-379 (596)
49 COG0071 IbpA Molecular chapero 97.4 0.0028 6E-08 54.2 11.2 81 19-99 39-135 (146)
50 cd06472 ACD_ScHsp26_like Alpha 97.2 0.0037 8E-08 49.0 9.6 75 183-257 1-92 (92)
51 cd06472 ACD_ScHsp26_like Alpha 97.1 0.0045 9.8E-08 48.5 9.4 75 22-96 1-92 (92)
52 cd06471 ACD_LpsHSP_like Group 96.9 0.0099 2.1E-07 46.5 9.5 75 21-96 1-93 (93)
53 cd06471 ACD_LpsHSP_like Group 96.9 0.012 2.6E-07 46.1 9.8 75 182-257 1-93 (93)
54 KOG4379|consensus 96.8 0.0027 5.8E-08 63.0 6.1 90 16-111 285-378 (596)
55 cd06464 ACD_sHsps-like Alpha-c 96.7 0.018 3.8E-07 43.7 9.2 73 185-257 1-88 (88)
56 cd06464 ACD_sHsps-like Alpha-c 96.5 0.024 5.2E-07 42.9 8.9 73 24-96 1-88 (88)
57 PF00011 HSP20: Hsp20/alpha cr 96.5 0.045 9.8E-07 43.2 10.7 75 185-259 1-89 (102)
58 PF00011 HSP20: Hsp20/alpha cr 96.1 0.094 2E-06 41.4 10.5 76 24-99 1-90 (102)
59 cd06526 metazoan_ACD Alpha-cry 95.1 0.17 3.7E-06 38.8 8.3 67 191-257 7-83 (83)
60 cd06475 ACD_HspB1_like Alpha c 95.1 0.28 6E-06 38.2 9.5 71 185-255 4-84 (86)
61 cd06497 ACD_alphaA-crystallin_ 95.0 0.23 5E-06 38.6 8.9 71 187-257 6-86 (86)
62 cd06470 ACD_IbpA-B_like Alpha- 95.0 0.45 9.7E-06 37.1 10.5 74 182-257 1-90 (90)
63 cd06479 ACD_HspB7_like Alpha c 94.9 0.25 5.4E-06 38.2 8.6 70 188-257 5-81 (81)
64 PRK10743 heat shock protein Ib 94.8 0.4 8.7E-06 40.8 10.4 77 181-259 34-125 (137)
65 cd06498 ACD_alphaB-crystallin_ 94.6 0.35 7.5E-06 37.5 8.8 70 189-258 5-84 (84)
66 cd06526 metazoan_ACD Alpha-cry 94.5 0.27 5.8E-06 37.7 8.0 67 30-96 7-83 (83)
67 cd06475 ACD_HspB1_like Alpha c 94.4 0.48 1E-05 36.9 9.2 72 23-94 3-84 (86)
68 cd06470 ACD_IbpA-B_like Alpha- 94.2 0.86 1.9E-05 35.5 10.3 73 21-95 1-89 (90)
69 cd06478 ACD_HspB4-5-6 Alpha-cr 94.0 0.45 9.8E-06 36.7 8.4 70 188-257 4-83 (83)
70 cd06497 ACD_alphaA-crystallin_ 94.0 0.53 1.1E-05 36.6 8.7 71 26-96 6-86 (86)
71 cd06479 ACD_HspB7_like Alpha c 93.8 0.51 1.1E-05 36.5 8.3 71 26-96 4-81 (81)
72 PRK10743 heat shock protein Ib 93.3 1.3 2.8E-05 37.7 10.6 76 21-98 35-125 (137)
73 PRK11597 heat shock chaperone 93.2 1.5 3.2E-05 37.6 10.9 78 180-259 31-123 (142)
74 PRK11597 heat shock chaperone 92.9 1.4 3E-05 37.8 10.2 79 18-98 30-123 (142)
75 cd06498 ACD_alphaB-crystallin_ 92.4 1.2 2.6E-05 34.4 8.5 70 28-97 5-84 (84)
76 cd06476 ACD_HspB2_like Alpha c 92.2 1.1 2.4E-05 34.7 7.9 68 190-257 6-83 (83)
77 cd06478 ACD_HspB4-5-6 Alpha-cr 92.0 1.2 2.7E-05 34.2 8.0 70 27-96 4-83 (83)
78 cd06481 ACD_HspB9_like Alpha c 91.1 1.7 3.7E-05 33.8 8.1 66 190-255 6-85 (87)
79 cd06476 ACD_HspB2_like Alpha c 89.2 2.7 5.9E-05 32.5 7.8 68 29-96 6-83 (83)
80 PF08190 PIH1: pre-RNA process 88.4 2.2 4.9E-05 40.5 8.3 64 189-256 259-327 (328)
81 cd06481 ACD_HspB9_like Alpha c 87.3 4.2 9.2E-05 31.6 7.8 67 28-94 5-85 (87)
82 PF08190 PIH1: pre-RNA process 85.2 4.7 0.0001 38.3 8.6 64 28-95 259-327 (328)
83 cd06482 ACD_HspB10 Alpha cryst 84.6 9.2 0.0002 29.9 8.5 64 190-253 7-83 (87)
84 cd06477 ACD_HspB3_Like Alpha c 83.1 15 0.00032 28.4 9.0 66 189-254 5-80 (83)
85 cd06482 ACD_HspB10 Alpha cryst 78.2 20 0.00042 28.0 8.3 60 29-88 7-78 (87)
86 cd06477 ACD_HspB3_Like Alpha c 73.0 41 0.00088 26.0 8.9 58 28-85 5-71 (83)
87 cd06480 ACD_HspB8_like Alpha-c 71.1 44 0.00096 26.3 8.7 65 191-255 15-89 (91)
88 cd06480 ACD_HspB8_like Alpha-c 61.6 78 0.0017 24.9 8.7 66 28-93 13-88 (91)
89 PF05455 GvpH: GvpH; InterPro 51.6 1.4E+02 0.003 26.7 9.0 75 20-98 91-169 (177)
90 PF05455 GvpH: GvpH; InterPro 51.5 1.5E+02 0.0033 26.4 9.3 73 183-259 93-169 (177)
91 PF06543 Lac_bphage_repr: Lact 28.1 20 0.00043 25.0 0.1 12 118-129 17-28 (49)
92 KOG3247|consensus 25.7 39 0.00084 34.0 1.6 83 180-269 2-89 (466)
No 1
>KOG3158|consensus
Probab=100.00 E-value=2.3e-34 Score=247.34 Aligned_cols=118 Identities=42% Similarity=0.832 Sum_probs=110.8
Q ss_pred cccCCCceEEEEeCCEEEEEEEecCCCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEE
Q psy15003 16 DKVTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIK 95 (317)
Q Consensus 16 ~~~~~p~v~W~Q~~~~V~ltI~~kd~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~ 95 (317)
..+.+|.|.||||.+.|||||++.++++++|++++.+|+|+|+++++++.|.++|+||++|+|++|++++++|.|.+.|+
T Consensus 3 ~~~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~ 82 (180)
T KOG3158|consen 3 AGMQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR 82 (180)
T ss_pred ccccCCcchhhhhcCeEEEEEEeccCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence 45679999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccccccccceeecCCCeeecCCCCcCC
Q psy15003 96 KTDDDKTYWPHLTKEKNKYHWLKVDFNKWKDEDDSDDEN 134 (317)
Q Consensus 96 K~~~~g~~WprL~k~~~K~~~l~~Dwdkw~~~dd~~~~~ 134 (317)
|+++ +++||||++++.|||||++|||||+||||+++++
T Consensus 83 K~e~-~~~WprLtkeK~K~hwLkvDFdkW~Dededde~~ 120 (180)
T KOG3158|consen 83 KKEL-GEYWPRLTKEKAKLHWLKVDFDKWVDEDEDDEAE 120 (180)
T ss_pred cccc-ccccchhhhcccccceEEcchhhccccccccchh
Confidence 9995 5799999999999999999999999999665544
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=5.9e-33 Score=225.69 Aligned_cols=106 Identities=31% Similarity=0.692 Sum_probs=99.9
Q ss_pred CCceEEEEeCCEEEEEEEecCCCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCC
Q psy15003 20 PPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDD 99 (317)
Q Consensus 20 ~p~v~W~Q~~~~V~ltI~~kd~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~ 99 (317)
+|.++||||++.|+|||+++|+++++|++++++|+|+|.++ ++..|.++|+||++|+|++|++++++|+|+|+|+|+++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKSKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecCEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCC
Confidence 58999999999999999999999999999999999999765 55679999999999999999999999999999999984
Q ss_pred CCCCCCCcccccccccceeecCCCeeec
Q psy15003 100 DKTYWPHLTKEKNKYHWLKVDFNKWKDE 127 (317)
Q Consensus 100 ~g~~WprL~k~~~K~~~l~~Dwdkw~~~ 127 (317)
+.+||||++++.||+||++|||||+||
T Consensus 80 -~~~WprL~k~~~k~~~lk~DfdkW~D~ 106 (106)
T cd00237 80 -GVAWPRLTKEKAKPNWLSVDFDNWRDW 106 (106)
T ss_pred -CCCCchhhcCCCCCCcEECcchhccCC
Confidence 568999999999999999999999997
No 3
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.97 E-value=1.8e-30 Score=211.14 Aligned_cols=106 Identities=31% Similarity=0.692 Sum_probs=99.3
Q ss_pred CCcEEEEeeCCeEEEEEEcCCCCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCC
Q psy15003 181 PPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDD 260 (317)
Q Consensus 181 ~P~~~W~Qt~~~V~LtI~lkd~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~ 260 (317)
.|.++||||.+.|+|||.++|+++++|++++++|+|++.++ ++..|.++++||++|+|++|++++++|+|+|.|+|++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~- 78 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKSKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK- 78 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecCEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC-
Confidence 47899999999999999999999999999999999999765 5567999999999999999999999999999999998
Q ss_pred CCCCCCcccccccccCceeecCCCcccC
Q psy15003 261 DKTYWPHLTKEKNKYHWLKVDFNKWKDE 288 (317)
Q Consensus 261 ~~~~W~rL~k~~~k~~~~kvDwdkw~de 288 (317)
.+.+||||++++.|++|+++|||||+||
T Consensus 79 ~~~~WprL~k~~~k~~~lk~DfdkW~D~ 106 (106)
T cd00237 79 EGVAWPRLTKEKAKPNWLSVDFDNWRDW 106 (106)
T ss_pred CCCCCchhhcCCCCCCcEECcchhccCC
Confidence 3568999999999999999999999986
No 4
>KOG3158|consensus
Probab=99.96 E-value=2.4e-30 Score=222.60 Aligned_cols=116 Identities=43% Similarity=0.851 Sum_probs=108.6
Q ss_pred cCCCcEEEEeeCCeEEEEEEcCCCCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEec
Q psy15003 179 VTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 258 (317)
Q Consensus 179 ~~~P~~~W~Qt~~~V~LtI~lkd~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~ 258 (317)
..+|.+.||||.+.|||||.+.++++++|++++..|+|+++++.+++.|.++|+||++|+|++|++++++|.|.+.|+|+
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~ 84 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKK 84 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcc
Confidence 45899999999999999999999999999999999999999877888999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccCceeecCCCcccCCCcccCC
Q psy15003 259 DDDKTYWPHLTKEKNKYHWLKVDFNKWKDEDDSDDEN 295 (317)
Q Consensus 259 ~~~~~~W~rL~k~~~k~~~~kvDwdkw~dedd~~~~~ 295 (317)
+ .+.+||||++++.|++||++|||||+||||+++++
T Consensus 85 e-~~~~WprLtkeK~K~hwLkvDFdkW~Dededde~~ 120 (180)
T KOG3158|consen 85 E-LGEYWPRLTKEKAKLHWLKVDFDKWVDEDEDDEAE 120 (180)
T ss_pred c-cccccchhhhcccccceEEcchhhccccccccchh
Confidence 9 45899999999999999999999999999666544
No 5
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.95 E-value=4.6e-27 Score=191.28 Aligned_cols=108 Identities=48% Similarity=0.887 Sum_probs=101.1
Q ss_pred CcEEEEeeCCeEEEEEEcCCCCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCCC
Q psy15003 182 PSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDD 261 (317)
Q Consensus 182 P~~~W~Qt~~~V~LtI~lkd~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~~ 261 (317)
|.++||||.+.|+|+|++++++++.|+|++++|+|++.+..+++.|.++++||++|+|++|+|++++++|+|+|+|++ .
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~-~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE-A 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC-C
Confidence 679999999999999999999999999999999999876445777999999999999999999999999999999988 3
Q ss_pred CCCCCcccccccccCceeecCCCcccCCC
Q psy15003 262 KTYWPHLTKEKNKYHWLKVDFNKWKDEDD 290 (317)
Q Consensus 262 ~~~W~rL~k~~~k~~~~kvDwdkw~dedd 290 (317)
+.+|+||+++++|++|+++||+||.||||
T Consensus 80 ~~~W~~L~~~~~k~~~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKGKLPWLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCCCCCceECCchhcccCCC
Confidence 57999999999999999999999999986
No 6
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.94 E-value=9e-27 Score=189.55 Aligned_cols=108 Identities=48% Similarity=0.887 Sum_probs=100.9
Q ss_pred CceEEEEeCCEEEEEEEecCCCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCCC
Q psy15003 21 PSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDD 100 (317)
Q Consensus 21 p~v~W~Q~~~~V~ltI~~kd~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~~ 100 (317)
|.++||||.+.|+|+|++++++++.|+|++++|+|++.+..+++.|.++++||++|+|++|++++.+++|+|+|+|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~- 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA- 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC-
Confidence 6899999999999999999999999999999999998765567789999999999999999999999999999999983
Q ss_pred CCCCCCcccccccccceeecCCCeeecCC
Q psy15003 101 KTYWPHLTKEKNKYHWLKVDFNKWKDEDD 129 (317)
Q Consensus 101 g~~WprL~k~~~K~~~l~~Dwdkw~~~dd 129 (317)
+.+|++|++.+.|++|+++||+||+||||
T Consensus 80 ~~~W~~L~~~~~k~~~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKGKLPWLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCCCCCceECCchhcccCCC
Confidence 34999999998999999999999999986
No 7
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.82 E-value=9.7e-20 Score=142.87 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=76.4
Q ss_pred CceEEEEeCCEEEEEEEecCC--CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecC
Q psy15003 21 PSVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTD 98 (317)
Q Consensus 21 p~v~W~Q~~~~V~ltI~~kd~--~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~ 98 (317)
+|++||||++.|+|+|+++++ +++.|++++++|+|++..+ +++.|.++++||++|+|++|++++++++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCC
Confidence 689999999999999999876 4789999999999876543 4667999999999999999999999999999999999
Q ss_pred CCCCCCCCcc
Q psy15003 99 DDKTYWPHLT 108 (317)
Q Consensus 99 ~~g~~WprL~ 108 (317)
+ + +||+|+
T Consensus 80 ~-~-~W~~Le 87 (87)
T cd06488 80 P-G-SWAKLE 87 (87)
T ss_pred C-C-cCccCC
Confidence 4 5 999995
No 8
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.82 E-value=6.6e-20 Score=142.48 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=75.5
Q ss_pred EEEEeCCEEEEEEEecCC--CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCCCC
Q psy15003 24 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDK 101 (317)
Q Consensus 24 ~W~Q~~~~V~ltI~~kd~--~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~~g 101 (317)
+||||++.|+|+|+++++ +++.|+|++++|+|++.+. +++.|.++++||++|+|++|++++++++|+|+|+|++ .
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~-~- 77 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP-SGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE-A- 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC-CCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCC-C-
Confidence 699999999999999999 7999999999999998753 5567999999999999999999999999999999998 3
Q ss_pred CCCCCcc
Q psy15003 102 TYWPHLT 108 (317)
Q Consensus 102 ~~WprL~ 108 (317)
.+||||+
T Consensus 78 ~~W~~Le 84 (84)
T cd06489 78 IRWSKLE 84 (84)
T ss_pred CCCccCC
Confidence 4999995
No 9
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.81 E-value=1.3e-19 Score=140.88 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=76.0
Q ss_pred EEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCCCC
Q psy15003 185 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDK 262 (317)
Q Consensus 185 ~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~~~ 262 (317)
+||||.+.|+|+|+++++ +++.|+|++++|+|++.+. +++.|.++++||++|+|++|++++++++|+|+|+|++ +
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~--~ 77 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP-SGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE--A 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC-CCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCC--C
Confidence 699999999999999998 7999999999999998753 4557999999999999999999999999999999998 6
Q ss_pred CCCCccc
Q psy15003 263 TYWPHLT 269 (317)
Q Consensus 263 ~~W~rL~ 269 (317)
.+|++|+
T Consensus 78 ~~W~~Le 84 (84)
T cd06489 78 IRWSKLE 84 (84)
T ss_pred CCCccCC
Confidence 7999995
No 10
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.81 E-value=2.4e-19 Score=140.63 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=76.6
Q ss_pred CcEEEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecC
Q psy15003 182 PSVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTD 259 (317)
Q Consensus 182 P~~~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~ 259 (317)
+|++||||.+.|+|+|+++++ +++.|++++++|+|.+..+ ++..|.++++||++|+|++|++++.+++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCC
Confidence 589999999999999999875 5799999999999887643 4567999999999999999999999999999999999
Q ss_pred CCCCCCCccc
Q psy15003 260 DDKTYWPHLT 269 (317)
Q Consensus 260 ~~~~~W~rL~ 269 (317)
+++||+|+
T Consensus 80 --~~~W~~Le 87 (87)
T cd06488 80 --PGSWAKLE 87 (87)
T ss_pred --CCcCccCC
Confidence 57999995
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.78 E-value=4.4e-19 Score=172.23 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCcEEEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEec
Q psy15003 181 PPSVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 258 (317)
Q Consensus 181 ~P~~~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~ 258 (317)
.+|++||||.+.|+|+|+++++ .++.|+|++++|.+++... ++..|.++++||++|+|++|++++.++||||+|+|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVP-GEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecC-CCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 5899999999999999999987 5899999999999987643 456799999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccc--cC------------------ceeecCCCcccCCCc
Q psy15003 259 DDDKTYWPHLTKEKNK--YH------------------WLKVDFNKWKDEDDS 291 (317)
Q Consensus 259 ~~~~~~W~rL~k~~~k--~~------------------~~kvDwdkw~dedd~ 291 (317)
+ +..|++|++.... ++ -.++||||+..++++
T Consensus 235 ~--~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~ 285 (356)
T PLN03088 235 E--PITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKK 285 (356)
T ss_pred C--CCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhh
Confidence 9 5799999965421 11 125799999876433
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.76 E-value=2.1e-18 Score=167.56 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCceEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEec
Q psy15003 20 PPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 97 (317)
Q Consensus 20 ~p~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~ 97 (317)
.+|++|||+.++|+|+|+++++. ++.|+|++++|+++.... ++..|.+.++||++|+|++|+++++++||||+|+|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVP-GEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecC-CCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 48999999999999999999884 899999999999987543 557899999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccc--ccc------------------eeecCCCeeecC
Q psy15003 98 DDDKTYWPHLTKEKNK--YHW------------------LKVDFNKWKDED 128 (317)
Q Consensus 98 ~~~g~~WprL~k~~~K--~~~------------------l~~Dwdkw~~~d 128 (317)
++ ..|++|++.... ++. -++||||+..+.
T Consensus 235 ~~--~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~ 283 (356)
T PLN03088 235 EP--ITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEV 283 (356)
T ss_pred CC--CCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhh
Confidence 84 499999965421 111 257999997653
No 13
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.73 E-value=2.7e-17 Score=129.59 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=75.9
Q ss_pred cEEEEeeCCeEEEEEEcCCC-----CCCeEEEecCEEEEEEEeCCCCceEEEEEe-cccccccccceEEeeCcEEEEEEE
Q psy15003 183 SVAWAQRNHCIFLTICLEDC-----KNPTINLDKNQLYFDGIGGTEKKHHQVTIP-FYKEINAEKSQTFVRERNIEILIK 256 (317)
Q Consensus 183 ~~~W~Qt~~~V~LtI~lkd~-----~d~~V~~~~~sl~f~~~~~~~~~~y~~~le-L~~~I~pe~s~~~v~~~kVei~Lk 256 (317)
+|+||||.+.|+|+|+++++ +++.|+|++++|.|.+.+ .++.+|.+.+. ||++|+|++|+|++.+++|+|+|+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 68999999999999999975 679999999999999864 34567999997 999999999999999999999999
Q ss_pred ecCCCCCCCCccc
Q psy15003 257 KTDDDKTYWPHLT 269 (317)
Q Consensus 257 K~~~~~~~W~rL~ 269 (317)
|++ ..+|++|+
T Consensus 82 K~~--~~~W~~L~ 92 (92)
T cd06468 82 KKK--EKKWESLT 92 (92)
T ss_pred eCC--CCccCccC
Confidence 999 47999985
No 14
>KOG1309|consensus
Probab=99.72 E-value=5.5e-18 Score=147.09 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=96.3
Q ss_pred CCcEEEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEec
Q psy15003 181 PPSVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 258 (317)
Q Consensus 181 ~P~~~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~ 258 (317)
.+||+|||+...|.|||+++++ +++.|.|+++.|++.+... ++..|.+.+.||++|+|+.|++++.++||||+|.|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~-~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLP-SGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecC-CchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 5799999999999999999997 4899999999999887754 667899999999999999999999999999999998
Q ss_pred CCCCCCCCcccccccc---------------c-CceeecCCCcccCCCcccCC
Q psy15003 259 DDDKTYWPHLTKEKNK---------------Y-HWLKVDFNKWKDEDDSDDEN 295 (317)
Q Consensus 259 ~~~~~~W~rL~k~~~k---------------~-~~~kvDwdkw~dedd~~~~~ 295 (317)
+ ...|..|+++++- | ...+.|||+...|++.+|++
T Consensus 82 ~--~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~ 132 (196)
T KOG1309|consen 82 E--IIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEED 132 (196)
T ss_pred c--chhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhc
Confidence 8 7899999965331 1 12488999999887666554
No 15
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.72 E-value=4.7e-17 Score=128.19 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=75.7
Q ss_pred ceEEEEeCCEEEEEEEecCC-----CCCeEEEeeCEEEEEEEeCCCCceEEEEEe-cccccccCCceEEeeCCeEEEEEE
Q psy15003 22 SVAWAQRNHCIFLTICLEDC-----KNPTINLDKNQLYFDGIGGTEKKHHQVTIP-FYKEINAEKSQTFVRERNIEILIK 95 (317)
Q Consensus 22 ~v~W~Q~~~~V~ltI~~kd~-----~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~-L~~~I~pe~S~~~v~~rkIei~L~ 95 (317)
++.||||.+.|+|+|+++++ +++.|+|++++|.|++.+ .++..|.+.+. ||++|+|++|++++.+++|+|+|+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 68999999999999999975 578999999999999864 35668999997 999999999999999999999999
Q ss_pred ecCCCCCCCCCcc
Q psy15003 96 KTDDDKTYWPHLT 108 (317)
Q Consensus 96 K~~~~g~~WprL~ 108 (317)
|+++ .+|++|+
T Consensus 82 K~~~--~~W~~L~ 92 (92)
T cd06468 82 KKKE--KKWESLT 92 (92)
T ss_pred eCCC--CccCccC
Confidence 9994 4999995
No 16
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.72 E-value=2.9e-17 Score=126.68 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=75.1
Q ss_pred EEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCCCC
Q psy15003 185 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDK 262 (317)
Q Consensus 185 ~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~~~ 262 (317)
+||||.+.|+|+|+++++ +++.|++++++|.|++.++ ++..|.++++||++|+|++|+|++++++|+|+|+|+. .
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~--~ 77 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE--P 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC--C
Confidence 699999999999999997 6999999999999988753 3567999999999999999999999999999999999 4
Q ss_pred CCCCccc
Q psy15003 263 TYWPHLT 269 (317)
Q Consensus 263 ~~W~rL~ 269 (317)
.+||+|+
T Consensus 78 ~~W~~L~ 84 (84)
T cd06466 78 GSWPSLE 84 (84)
T ss_pred CCCccCC
Confidence 7999985
No 17
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.72 E-value=3.5e-17 Score=126.28 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=74.9
Q ss_pred EEEEeCCEEEEEEEecCC--CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCCCC
Q psy15003 24 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDK 101 (317)
Q Consensus 24 ~W~Q~~~~V~ltI~~kd~--~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~~g 101 (317)
+|||+++.|+|+|+++++ +++.|++++++|.|++..+ +++.|.++++||++|+|++|++++++++|+|+|+|+++ +
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~-~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP-G 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC-C
Confidence 699999999999999998 6999999999999987753 35689999999999999999999999999999999994 4
Q ss_pred CCCCCcc
Q psy15003 102 TYWPHLT 108 (317)
Q Consensus 102 ~~WprL~ 108 (317)
.||+|+
T Consensus 79 -~W~~L~ 84 (84)
T cd06466 79 -SWPSLE 84 (84)
T ss_pred -CCccCC
Confidence 899985
No 18
>KOG1309|consensus
Probab=99.66 E-value=9.5e-17 Score=139.43 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=93.9
Q ss_pred CCceEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEec
Q psy15003 20 PPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 97 (317)
Q Consensus 20 ~p~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~ 97 (317)
.+|++|||+...|+|||+++++. ++.|.|.++.|+...... ++..|.+.+.||++|+|+.|++++.++||||+|.|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~-~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLP-SGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecC-CchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 57999999999999999999985 899999999998887654 677899999999999999999999999999999998
Q ss_pred CCCCCCCCCccccccc---------------c-cceeecCCCeeecCCCCcCC
Q psy15003 98 DDDKTYWPHLTKEKNK---------------Y-HWLKVDFNKWKDEDDSDDEN 134 (317)
Q Consensus 98 ~~~g~~WprL~k~~~K---------------~-~~l~~Dwdkw~~~dd~~~~~ 134 (317)
+ .++|..|++.++- | .--+.|||+...|++.++++
T Consensus 82 ~--~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~ 132 (196)
T KOG1309|consen 82 E--IIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEED 132 (196)
T ss_pred c--chhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhc
Confidence 7 4799999953221 1 12389999999876544443
No 19
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.64 E-value=2.6e-15 Score=113.49 Aligned_cols=75 Identities=23% Similarity=0.378 Sum_probs=67.1
Q ss_pred CcEEEEeeCCeEEEEEEcCCC----CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEe
Q psy15003 182 PSVAWAQRNHCIFLTICLEDC----KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKK 257 (317)
Q Consensus 182 P~~~W~Qt~~~V~LtI~lkd~----~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK 257 (317)
|+|.|+||.+.|+|+|++++. +++.|+|++++|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSG-DGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEET-TSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEcc-CCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 799999999999999999664 6999999999999998754 33789999999999999999999999999999998
No 20
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.61 E-value=7.1e-15 Score=111.10 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=67.2
Q ss_pred CceEEEEeCCEEEEEEEecCC----CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEe
Q psy15003 21 PSVAWAQRNHCIFLTICLEDC----KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKK 96 (317)
Q Consensus 21 p~v~W~Q~~~~V~ltI~~kd~----~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K 96 (317)
|++.|+|+.+.|+|+|.+++. ++++|+|++++|.|++..+. ++.|.++++||++|+|++|++++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~-~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGD-GKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETT-SCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccC-CceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 899999999999999999654 59999999999999987543 3899999999999999999999999999999998
No 21
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.61 E-value=4.4e-15 Score=113.05 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=75.0
Q ss_pred EEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCCCCC
Q psy15003 186 WAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKT 263 (317)
Q Consensus 186 W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~~~~ 263 (317)
|+|+.+.|+|+|+++++ +++.|++++++|.|++.+. ++..|.++++||++|+|++|+|++.+++|+|+|+|+. .+.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~-~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE-PGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC-CCC
Confidence 99999999999999987 7999999999999998743 3567999999999999999999999999999999999 348
Q ss_pred CCCccc
Q psy15003 264 YWPHLT 269 (317)
Q Consensus 264 ~W~rL~ 269 (317)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999985
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.61 E-value=3.2e-15 Score=113.88 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=68.1
Q ss_pred EEeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEecCCCCC
Q psy15003 186 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKT 263 (317)
Q Consensus 186 W~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~~~~~~ 263 (317)
|+||.+.|+|+|++++++ ++.|+++++.|.+++ ..|.+.++||++|+|++|++++.+++|+|+|.|++ .+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~--~~ 72 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE--PG 72 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC--CC
Confidence 999999999999999975 677778888777654 45999999999999999999999999999999998 47
Q ss_pred CCCccc
Q psy15003 264 YWPHLT 269 (317)
Q Consensus 264 ~W~rL~ 269 (317)
+|++|+
T Consensus 73 ~W~~L~ 78 (78)
T cd06469 73 IWEALC 78 (78)
T ss_pred cccccC
Confidence 999995
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.61 E-value=4e-15 Score=113.39 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=67.7
Q ss_pred EEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCCCCC
Q psy15003 25 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKT 102 (317)
Q Consensus 25 W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~~g~ 102 (317)
|+|+++.|+|+|++++++ ++.|+++++.|.+++ ..|.++++||++|+|++|++++.+++|+|+|+|+++ +
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~-~- 72 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP-G- 72 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC-C-
Confidence 999999999999999986 677777887777754 359999999999999999999999999999999984 4
Q ss_pred CCCCcc
Q psy15003 103 YWPHLT 108 (317)
Q Consensus 103 ~WprL~ 108 (317)
+||||+
T Consensus 73 ~W~~L~ 78 (78)
T cd06469 73 IWEALC 78 (78)
T ss_pred cccccC
Confidence 999995
No 24
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.60 E-value=4.5e-15 Score=115.79 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=69.5
Q ss_pred EEEEeeCCeEEEEEEcC-CC--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEee-CcEEEEEEEecC
Q psy15003 184 VAWAQRNHCIFLTICLE-DC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKKTD 259 (317)
Q Consensus 184 ~~W~Qt~~~V~LtI~lk-d~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~LkK~~ 259 (317)
|.|+||.+.|+|+|+++ ++ ++++|+|++++|.+.+.+ + ...++++||++|+|++|+|++. +++|+|+|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~---~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD---Q-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC---C-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 58999999999999996 43 799999999999997642 2 3457889999999999999985 567999999998
Q ss_pred CCCCCCCccc
Q psy15003 260 DDKTYWPHLT 269 (317)
Q Consensus 260 ~~~~~W~rL~ 269 (317)
.+.+||+|.
T Consensus 77 -~~~~W~~L~ 85 (85)
T cd06493 77 -EGPTWPELV 85 (85)
T ss_pred -CCccccccC
Confidence 467999984
No 25
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.60 E-value=5e-15 Score=114.64 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=72.3
Q ss_pred EEEEeeCCeEEEEEEcCCC---CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeC-cEEEEEEEecC
Q psy15003 184 VAWAQRNHCIFLTICLEDC---KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKKTD 259 (317)
Q Consensus 184 ~~W~Qt~~~V~LtI~lkd~---~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~-~kVei~LkK~~ 259 (317)
|.|+||.+.|+|+|.+++. +++.|++++++|.|++.+ ..+.++++||++|+|++|+|++.+ ++|+|+|+|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 5899999999999999753 799999999999998753 357889999999999999999999 99999999999
Q ss_pred CCCCCCCccc
Q psy15003 260 DDKTYWPHLT 269 (317)
Q Consensus 260 ~~~~~W~rL~ 269 (317)
.+.+||+|.
T Consensus 77 -~~~~W~~L~ 85 (85)
T cd06467 77 -EGEWWPSLV 85 (85)
T ss_pred -CCccccccC
Confidence 347999984
No 26
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.60 E-value=7.4e-15 Score=111.76 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=74.9
Q ss_pred EEEeCCEEEEEEEecCC--CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEecCCCCC
Q psy15003 25 WAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKT 102 (317)
Q Consensus 25 W~Q~~~~V~ltI~~kd~--~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~~~~g~ 102 (317)
|+|+++.|+|+|.++++ +++.|++++++|+|++.+. ++..|.++++||++|+|++|++++.+++|+|+|+|+++ +.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~-~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP-GE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC-CC
Confidence 99999999999999988 7999999999999998753 35689999999999999999999999999999999994 56
Q ss_pred CCCCcc
Q psy15003 103 YWPHLT 108 (317)
Q Consensus 103 ~WprL~ 108 (317)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999985
No 27
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.53 E-value=3.6e-14 Score=111.48 Aligned_cols=81 Identities=16% Similarity=0.389 Sum_probs=71.7
Q ss_pred EEEEeeCCeEEEEEEcC-----CCCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeC-cEEEEEEEe
Q psy15003 184 VAWAQRNHCIFLTICLE-----DCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKK 257 (317)
Q Consensus 184 ~~W~Qt~~~V~LtI~lk-----d~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~-~kVei~LkK 257 (317)
|.|.||.+.|+|+|.++ .+++++|++++++|.+..++ +.+.++++||++|+|++|+|.+.+ +.++|.|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g----~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG----QPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC----CceEEeCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 57999999999999995 35799999999999998753 457899999999999999999977 679999999
Q ss_pred cCCCCCCCCccc
Q psy15003 258 TDDDKTYWPHLT 269 (317)
Q Consensus 258 ~~~~~~~W~rL~ 269 (317)
.+ .+.|||+|+
T Consensus 77 ~~-~~~wW~~l~ 87 (87)
T cd06492 77 IN-KMEWWSRLV 87 (87)
T ss_pred CC-CCccccccC
Confidence 97 468999984
No 28
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.53 E-value=4.1e-14 Score=109.50 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=71.4
Q ss_pred eEEEEeCCEEEEEEEecCC---CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeC-CeEEEEEEecC
Q psy15003 23 VAWAQRNHCIFLTICLEDC---KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKKTD 98 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~kd~---~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~-rkIei~L~K~~ 98 (317)
+.|+|+.+.|+|+|.+++. ++++|++++++|++++.+ ..+.++..||++|+|++|++++.+ ++|+|+|+|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 4799999999999998743 699999999999998742 357788899999999999999999 99999999999
Q ss_pred CCCCCCCCcc
Q psy15003 99 DDKTYWPHLT 108 (317)
Q Consensus 99 ~~g~~WprL~ 108 (317)
+ |.+||+|.
T Consensus 77 ~-~~~W~~L~ 85 (85)
T cd06467 77 E-GEWWPSLV 85 (85)
T ss_pred C-CccccccC
Confidence 4 56999984
No 29
>KOG1667|consensus
Probab=99.53 E-value=2e-14 Score=130.79 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=95.8
Q ss_pred eeccce----eeccccccCCCc--cCCCcEEEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEe
Q psy15003 161 YNFNSL----VVSRSTYYQPKA--VTPPSVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIP 232 (317)
Q Consensus 161 ~~~~~~----~~~~~~~~~~~~--~~~P~~~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~le 232 (317)
-+||-. -|+.|.|-|.++ ++.+|++|.||...|+|+|+.+.+ ....|+.+...|++.+.-+.++..|.++++
T Consensus 188 sdF~aFlaQ~GCt~GeH~w~k~~~V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~k 267 (320)
T KOG1667|consen 188 SDFGAFLAQVGCTSGEHKWRKNEIVVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYK 267 (320)
T ss_pred ccHHHHhhhcCccccchhhhccCccccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccce
Confidence 355544 699999999984 578899999999999999999986 456778888888888876668889999999
Q ss_pred cccccccccceEEeeCcEEEEEEEecCCCCCCCCccccc
Q psy15003 233 FYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKE 271 (317)
Q Consensus 233 L~~~I~pe~s~~~v~~~kVei~LkK~~~~~~~W~rL~k~ 271 (317)
|++.|++++|++.++++||||+|+|++ +..|++|+-.
T Consensus 268 Lwgvvnve~s~v~m~~tkVEIsl~k~e--p~sWa~Le~p 304 (320)
T KOG1667|consen 268 LWGVVNVEESSVVMGETKVEISLKKAE--PGSWARLEFP 304 (320)
T ss_pred eeeeechhhceEEeecceEEEEEeccC--CCCcccccCC
Confidence 999999999999999999999999999 6789999975
No 30
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.53 E-value=1.2e-13 Score=111.71 Aligned_cols=93 Identities=13% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCCcEEEEeeCCeEEEEEEcCC----CCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeC-cEEEEE
Q psy15003 180 TPPSVAWAQRNHCIFLTICLED----CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEIL 254 (317)
Q Consensus 180 ~~P~~~W~Qt~~~V~LtI~lkd----~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~-~kVei~ 254 (317)
.+++|.|.||.+.|.|+|.++. ++++.|+|++++|.+..++..+ ..-.++.+||++|++++|+|.+.+ ..|+|.
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~-~~~~i~G~L~~~V~~des~Wtled~~~l~I~ 81 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG-EKVLMEGEFTHKINTENSLWSLEPGKCVLLS 81 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC-CceEEeCcccCcccCccceEEEeCCCEEEEE
Confidence 3789999999999999999994 3699999999999999874222 234699999999999999999988 558999
Q ss_pred EEecCCCCCCCCccccccccc
Q psy15003 255 IKKTDDDKTYWPHLTKEKNKY 275 (317)
Q Consensus 255 LkK~~~~~~~W~rL~k~~~k~ 275 (317)
|.|.. +.||++|.++.+++
T Consensus 82 L~K~~--~~wW~~v~~g~~~i 100 (102)
T cd06495 82 LSKCS--EVWWNAVLKGEEEI 100 (102)
T ss_pred EEECC--CcccchhhCCCCcC
Confidence 99998 57999999987664
No 31
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.52 E-value=8.4e-14 Score=109.33 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=65.6
Q ss_pred eEEEEeCCEEEEEEEecC--CCCCe--EEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEee--CCeEEEEEEe
Q psy15003 23 VAWAQRNHCIFLTICLED--CKNPT--INLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR--ERNIEILIKK 96 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~kd--~~d~~--V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~--~rkIei~L~K 96 (317)
++|||+++.|+|+|++|. ..+.. +++++++|+++..-+ +..|.++++||++|+|+. +++++ ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEc
Confidence 589999999999999884 44444 666777888876532 567999999999998764 88888 5599999999
Q ss_pred cCCCCCCCCCcc
Q psy15003 97 TDDDKTYWPHLT 108 (317)
Q Consensus 97 ~~~~g~~WprL~ 108 (317)
+++ ..|++|.
T Consensus 78 ~e~--~~W~~Lg 87 (87)
T cd06490 78 KEP--EKWTSLG 87 (87)
T ss_pred CCC--CccccCc
Confidence 994 4899984
No 32
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.52 E-value=8.1e-14 Score=109.40 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=65.7
Q ss_pred EEEEeeCCeEEEEEEcCC--CCCC--eEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEee--CcEEEEEEEe
Q psy15003 184 VAWAQRNHCIFLTICLED--CKNP--TINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR--ERNIEILIKK 257 (317)
Q Consensus 184 ~~W~Qt~~~V~LtI~lkd--~~d~--~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~--~~kVei~LkK 257 (317)
++|||+.+.|+|+|+.+. ..+. .+.++.++|+++..-+ +..|.++++||++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEc
Confidence 589999999999999884 4444 4666777888887642 567999999999998754 88887 5699999999
Q ss_pred cCCCCCCCCcc
Q psy15003 258 TDDDKTYWPHL 268 (317)
Q Consensus 258 ~~~~~~~W~rL 268 (317)
++ +..|++|
T Consensus 78 ~e--~~~W~~L 86 (87)
T cd06490 78 KE--PEKWTSL 86 (87)
T ss_pred CC--CCccccC
Confidence 99 5789998
No 33
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.49 E-value=1.6e-13 Score=109.08 Aligned_cols=84 Identities=17% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCcEEEEeeCCeEEEEEEcCC---CCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcE-EEEEEE
Q psy15003 181 PPSVAWAQRNHCIFLTICLED---CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERN-IEILIK 256 (317)
Q Consensus 181 ~P~~~W~Qt~~~V~LtI~lkd---~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~k-Vei~Lk 256 (317)
+++|.|+||.+.|+|+|.++. ++++.|.|++++|.+.+.+ .. .++.+||++|+|++|+|++.+.+ ++|.|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g----~~-~l~G~L~~~I~~destWtled~k~l~I~L~ 79 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKG----QE-VLKGKLFDSVVADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECC----EE-EEcCcccCccCcccCEEEEECCcEEEEEEE
Confidence 678999999999999998884 4699999999999998743 34 78889999999999999999988 699999
Q ss_pred ecCC-CCCCCCccc
Q psy15003 257 KTDD-DKTYWPHLT 269 (317)
Q Consensus 257 K~~~-~~~~W~rL~ 269 (317)
|.+. .+.+|++|.
T Consensus 80 K~~~~~~~~W~sl~ 93 (93)
T cd06494 80 KSNRDAGNCWKSLL 93 (93)
T ss_pred eCCCCCCccccccC
Confidence 9871 124999874
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.49 E-value=2.2e-13 Score=106.24 Aligned_cols=81 Identities=22% Similarity=0.405 Sum_probs=68.5
Q ss_pred eEEEEeCCEEEEEEEec-CC--CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEee-CCeEEEEEEecC
Q psy15003 23 VAWAQRNHCIFLTICLE-DC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKKTD 98 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~k-d~--~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~-~rkIei~L~K~~ 98 (317)
+.|+||.+.|+|+|.++ ++ ++++|+|++++|.+... ++. ..++.+||++|+|++|++++. +++|+|.|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~---~~~-~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK---DQA-PLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC---CCC-eEEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 47999999999999995 54 69999999999999753 222 337789999999999999985 567999999999
Q ss_pred CCCCCCCCcc
Q psy15003 99 DDKTYWPHLT 108 (317)
Q Consensus 99 ~~g~~WprL~ 108 (317)
+ |.+||+|.
T Consensus 77 ~-~~~W~~L~ 85 (85)
T cd06493 77 E-GPTWPELV 85 (85)
T ss_pred C-CccccccC
Confidence 4 67999983
No 35
>KOG1667|consensus
Probab=99.42 E-value=3.8e-13 Score=122.50 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=81.4
Q ss_pred cCCCceEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEE
Q psy15003 18 VTPPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIK 95 (317)
Q Consensus 18 ~~~p~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~ 95 (317)
++.+|++|+|++..|+|+||++.+- ...|+.+...|+++..-+.|+..|.++++|++.|++++|++.++++||||+|+
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 6889999999999999999999764 56678888888888765567889999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccc
Q psy15003 96 KTDDDKTYWPHLTKE 110 (317)
Q Consensus 96 K~~~~g~~WprL~k~ 110 (317)
|++| | .|+||...
T Consensus 292 k~ep-~-sWa~Le~p 304 (320)
T KOG1667|consen 292 KAEP-G-SWARLEFP 304 (320)
T ss_pred ccCC-C-CcccccCC
Confidence 9995 5 89999975
No 36
>KOG2265|consensus
Probab=99.28 E-value=7.9e-12 Score=108.54 Aligned_cols=98 Identities=10% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCcEEEEeeCCeEEEEEEcCC----CCCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEE
Q psy15003 181 PPSVAWAQRNHCIFLTICLED----CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIK 256 (317)
Q Consensus 181 ~P~~~W~Qt~~~V~LtI~lkd----~~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~Lk 256 (317)
.+.|.|+||...|.|.|.++. +++++|.|..+++.++.++ +...++.+|+++|++++|.|++.+.++.+.+-
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg----~~~ildG~L~~~vk~des~WtiEd~k~i~i~l 93 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG----QPPILDGELSHSVKVDESTWTIEDGKMIVILL 93 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC----CCceecCccccccccccceEEecCCEEEEEEe
Confidence 889999999999999998883 4689999999999998764 45789999999999999999998866666555
Q ss_pred ecCCCCCCCCcccccccccCceeecC
Q psy15003 257 KTDDDKTYWPHLTKEKNKYHWLKVDF 282 (317)
Q Consensus 257 K~~~~~~~W~rL~k~~~k~~~~kvDw 282 (317)
|+...+.||.||..+.+.+...+++=
T Consensus 94 ~K~~~~eWW~~ll~gep~ID~~ki~~ 119 (179)
T KOG2265|consen 94 KKSNKMEWWDSLLEGEPEIDTKKIEP 119 (179)
T ss_pred eccchHHHHHHHHcCCCCCCccccCh
Confidence 55413689999999988888777775
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.18 E-value=1.5e-10 Score=90.96 Aligned_cols=81 Identities=16% Similarity=0.389 Sum_probs=69.2
Q ss_pred eEEEEeCCEEEEEEEec-----CCCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeC-CeEEEEEEe
Q psy15003 23 VAWAQRNHCIFLTICLE-----DCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKK 96 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~k-----d~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~-rkIei~L~K 96 (317)
+.|.||-+.|+|+|.++ .+++++|++++++|.+...+ ..+-++-+||++|+|++|.+.+.+ +.+.|.|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g----~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG----QPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC----CceEEeCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 46999999999999984 45799999999999997642 346688899999999999999966 679999999
Q ss_pred cCCCCCCCCCcc
Q psy15003 97 TDDDKTYWPHLT 108 (317)
Q Consensus 97 ~~~~g~~WprL~ 108 (317)
++ ++.+||+|.
T Consensus 77 ~~-~~~wW~~l~ 87 (87)
T cd06492 77 IN-KMEWWSRLV 87 (87)
T ss_pred CC-CCccccccC
Confidence 97 367999984
No 38
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.13 E-value=4.7e-10 Score=89.27 Aligned_cols=85 Identities=15% Similarity=0.331 Sum_probs=70.4
Q ss_pred CCCceEEEEeCCEEEEEEEec-C--CCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCe-EEEEE
Q psy15003 19 TPPSVAWAQRNHCIFLTICLE-D--CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERN-IEILI 94 (317)
Q Consensus 19 ~~p~v~W~Q~~~~V~ltI~~k-d--~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rk-Iei~L 94 (317)
.++.+.|+|+.+.|.|+|-++ + +++++|.|++++|.+... + .. .++-+||++|+|++|.+++.+.+ ++|.|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g-~~-~l~G~L~~~I~~destWtled~k~l~I~L 78 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---G-QE-VLKGKLFDSVVADECTWTLEDRKLIRIVL 78 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---C-EE-EEcCcccCccCcccCEEEEECCcEEEEEE
Confidence 468899999999999999776 3 359999999999999863 2 33 46668999999999999999999 69999
Q ss_pred EecCC-CCCCCCCcc
Q psy15003 95 KKTDD-DKTYWPHLT 108 (317)
Q Consensus 95 ~K~~~-~g~~WprL~ 108 (317)
.|++. .|.+|+.|.
T Consensus 79 ~K~~~~~~~~W~sl~ 93 (93)
T cd06494 79 TKSNRDAGNCWKSLL 93 (93)
T ss_pred EeCCCCCCccccccC
Confidence 99862 135899873
No 39
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.94 E-value=1.1e-08 Score=82.79 Aligned_cols=90 Identities=14% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCceEEEEeCCEEEEEEEecC----CCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeC-CeEEEE
Q psy15003 19 TPPSVAWAQRNHCIFLTICLED----CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRE-RNIEIL 93 (317)
Q Consensus 19 ~~p~v~W~Q~~~~V~ltI~~kd----~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~-rkIei~ 93 (317)
....+.|.|+-+.|.|+|.++. +++++|+|+.++|.+..++..+...+ ++=+||++|++++|.+.+.+ ..|.|.
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~-i~G~L~~~V~~des~Wtled~~~l~I~ 81 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVL-MEGEFTHKINTENSLWSLEPGKCVLLS 81 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceE-EeCcccCcccCccceEEEeCCCEEEEE
Confidence 4678999999999999999883 36999999999999987643222344 67789999999999999987 448999
Q ss_pred EEecCCCCCCCCCccccc
Q psy15003 94 IKKTDDDKTYWPHLTKEK 111 (317)
Q Consensus 94 L~K~~~~g~~WprL~k~~ 111 (317)
|.|.. . .+||+|.+..
T Consensus 82 L~K~~-~-~wW~~v~~g~ 97 (102)
T cd06495 82 LSKCS-E-VWWNAVLKGE 97 (102)
T ss_pred EEECC-C-cccchhhCCC
Confidence 99987 3 4999998754
No 40
>KOG3260|consensus
Probab=98.92 E-value=1.5e-09 Score=94.77 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=75.6
Q ss_pred eEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCCceEEEEEe-cccccccCCceEEeeCCeEEEEEEecCC
Q psy15003 23 VAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIP-FYKEINAEKSQTFVRERNIEILIKKTDD 99 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~~~y~~~l~-L~~~I~pe~S~~~v~~rkIei~L~K~~~ 99 (317)
+-|.|++++|-+.|.+.++. +++|+|++.+|.+..+.. +|+.|.+.+. |+++|.||+|+.++....|-|.++|-+
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dl-qGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe- 154 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDL-QGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVE- 154 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeec-CCcceeeehhhhccccChhhcccccccceEEEeehhhh-
Confidence 67999999999999999985 899999999999887754 6789999996 999999999999999999999998887
Q ss_pred CCCCCCCccc
Q psy15003 100 DKTYWPHLTK 109 (317)
Q Consensus 100 ~g~~WprL~k 109 (317)
. .+|.-|+.
T Consensus 155 ~-~rwd~Lt~ 163 (224)
T KOG3260|consen 155 N-TRWDYLTQ 163 (224)
T ss_pred c-ccchHHHH
Confidence 3 49999983
No 41
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.89 E-value=1e-08 Score=75.87 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=65.2
Q ss_pred EEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCC------CCceEEEEEecccccccccceEEeeCcEEEEEEEe
Q psy15003 186 WAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGT------EKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKK 257 (317)
Q Consensus 186 W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~------~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK 257 (317)
|+|+.+.|+|+|.+++. +++.|.++++.|.|++.... +...|.+.+.|+++|+|+++++++.+.+++|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 89999999999999987 68999999999999987431 24689999999999999999999999999999987
No 42
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.89 E-value=9.3e-09 Score=76.08 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=65.2
Q ss_pred EEEeCCEEEEEEEecCC--CCCeEEEeeCEEEEEEEeCC------CCceEEEEEecccccccCCceEEeeCCeEEEEEEe
Q psy15003 25 WAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGT------EKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKK 96 (317)
Q Consensus 25 W~Q~~~~V~ltI~~kd~--~d~~V~~~~~~l~f~~~~~~------~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K 96 (317)
|+|+++.|+|+|.+++. +++.|.++++.|.+++.... +...|.+.+.|+++|+|+++++++.+..++|.|+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 89999999999999988 58999999999999987532 24689999999999999999999999999999987
No 43
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.63 E-value=1.3e-08 Score=94.42 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=92.9
Q ss_pred ccCCCcEEEEeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEE
Q psy15003 178 AVTPPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILI 255 (317)
Q Consensus 178 ~~~~P~~~W~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~L 255 (317)
....-+++|+||...+.|-|+.+.+. ++.+-+++|+|+++.....++..+.+...||++|.|+.+..++.+.++++.|
T Consensus 173 ~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l 252 (368)
T COG5091 173 PKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHL 252 (368)
T ss_pred ccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehh
Confidence 34455777788887777778777776 4556668999999988665667788889999999999999999999999999
Q ss_pred EecCCCCCCCCccccccc------------------ccCceeecCCCcccCCCcccCCC
Q psy15003 256 KKTDDDKTYWPHLTKEKN------------------KYHWLKVDFNKWKDEDDSDDENN 296 (317)
Q Consensus 256 kK~~~~~~~W~rL~k~~~------------------k~~~~kvDwdkw~dedd~~~~~~ 296 (317)
+|.+ +..|..|.+... +....+.||++...+++-|+|.+
T Consensus 253 ~KV~--~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~p 309 (368)
T COG5091 253 RKVE--MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENP 309 (368)
T ss_pred hhhh--hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCc
Confidence 9999 789999996421 12347899999998887777663
No 44
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.46 E-value=8.9e-08 Score=88.95 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCceEEEEeCCEEEEEEEecCCCC--CeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEEec
Q psy15003 20 PPSVAWAQRNHCIFLTICLEDCKN--PTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 97 (317)
Q Consensus 20 ~p~v~W~Q~~~~V~ltI~~kd~~d--~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~K~ 97 (317)
.-+++|.|+...+.|-|+.+-+.+ |.+-+++++|.++.....++..+...+.||++|.|+.+.+++.+.++++.|+|-
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence 334455555555556666666654 555668899999887665666777888999999999999999998999999998
Q ss_pred CCCCCCCCCcccccc------------------cccceeecCCCeeecCCCCcCC
Q psy15003 98 DDDKTYWPHLTKEKN------------------KYHWLKVDFNKWKDEDDSDDEN 134 (317)
Q Consensus 98 ~~~g~~WprL~k~~~------------------K~~~l~~Dwdkw~~~dd~~~~~ 134 (317)
+ . .+|..|.+.+. +...-+.||++..-+++-|+|+
T Consensus 256 ~-~-v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ 308 (368)
T COG5091 256 E-M-VRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEEN 308 (368)
T ss_pred h-h-hhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccC
Confidence 8 3 69999987543 1234689999999877766654
No 45
>KOG3260|consensus
Probab=98.44 E-value=3.2e-07 Score=80.36 Aligned_cols=84 Identities=27% Similarity=0.377 Sum_probs=75.1
Q ss_pred cEEEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCCCCceEEEEEe-cccccccccceEEeeCcEEEEEEEecC
Q psy15003 183 SVAWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGTEKKHHQVTIP-FYKEINAEKSQTFVRERNIEILIKKTD 259 (317)
Q Consensus 183 ~~~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~le-L~~~I~pe~s~~~v~~~kVei~LkK~~ 259 (317)
-|-|-|+...|-+.|.+.++ ++++|+|++++|.+.+... .++.|.+.+. |.++|.|+.|..++....|.|.++|.+
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dl-qGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDL-QGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVE 154 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeec-CCcceeeehhhhccccChhhcccccccceEEEeehhhh
Confidence 38999999999999999987 4899999999998877643 5678999997 999999999999999999999998887
Q ss_pred CCCCCCCccc
Q psy15003 260 DDKTYWPHLT 269 (317)
Q Consensus 260 ~~~~~W~rL~ 269 (317)
..+|.-|+
T Consensus 155 --~~rwd~Lt 162 (224)
T KOG3260|consen 155 --NTRWDYLT 162 (224)
T ss_pred --cccchHHH
Confidence 47899988
No 46
>KOG2265|consensus
Probab=97.93 E-value=3.2e-05 Score=67.70 Aligned_cols=92 Identities=10% Similarity=0.232 Sum_probs=72.0
Q ss_pred cccCCCceEEEEeCCEEEEEEEec-C---CCCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEE
Q psy15003 16 DKVTPPSVAWAQRNHCIFLTICLE-D---CKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIE 91 (317)
Q Consensus 16 ~~~~~p~v~W~Q~~~~V~ltI~~k-d---~~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIe 91 (317)
+....+.+.|+|+=..|.|.|-++ + +++++|.|..++|.+...+ ..--++-+||++|++++|.+++.++++.
T Consensus 14 ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg----~~~ildG~L~~~vk~des~WtiEd~k~i 89 (179)
T KOG2265|consen 14 NGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG----QPPILDGELSHSVKVDESTWTIEDGKMI 89 (179)
T ss_pred CCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC----CCceecCccccccccccceEEecCCEEE
Confidence 445678999999999999988766 2 3589999999999887543 2234777899999999999999888876
Q ss_pred EEEEecCCCCCCCCCccccc
Q psy15003 92 ILIKKTDDDKTYWPHLTKEK 111 (317)
Q Consensus 92 i~L~K~~~~g~~WprL~k~~ 111 (317)
+++-|+...+.||.+|....
T Consensus 90 ~i~l~K~~~~eWW~~ll~ge 109 (179)
T KOG2265|consen 90 VILLKKSNKMEWWDSLLEGE 109 (179)
T ss_pred EEEeeccchHHHHHHHHcCC
Confidence 66655552357999998764
No 47
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0012 Score=56.35 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=71.0
Q ss_pred cCCCcEEEEeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCCC--------------CceEEEEEecccccccccc
Q psy15003 179 VTPPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE--------------KKHHQVTIPFYKEINAEKS 242 (317)
Q Consensus 179 ~~~P~~~W~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~~--------------~~~y~~~leL~~~I~pe~s 242 (317)
...|.++.+++++.+.|++.+++++ ++.|.++++.|++++..... ...|.-.+.|...|+|+..
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 4689999999999999999999974 89999999999999874321 2568889999999999988
Q ss_pred eEEeeCcEEEEEEEecC
Q psy15003 243 QTFVRERNIEILIKKTD 259 (317)
Q Consensus 243 ~~~v~~~kVei~LkK~~ 259 (317)
+-++...-++|+|.|..
T Consensus 118 ~A~~~nGvL~I~lpk~~ 134 (146)
T COG0071 118 KAKYKNGLLTVTLPKAE 134 (146)
T ss_pred eeEeeCcEEEEEEeccc
Confidence 88899999999999988
No 48
>KOG4379|consensus
Probab=97.36 E-value=0.0004 Score=68.73 Aligned_cols=89 Identities=20% Similarity=0.411 Sum_probs=71.8
Q ss_pred cCCCcEEEEeeCCeEEEEEEcCC-C--CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEee-CcEEEEE
Q psy15003 179 VTPPSVAWAQRNHCIFLTICLED-C--KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR-ERNIEIL 254 (317)
Q Consensus 179 ~~~P~~~W~Qt~~~V~LtI~lkd-~--~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~ 254 (317)
..+|.|.|.|+.+.+.+++.++. + ++..|.+-++++.+... -.-.++.+||+.|.-|.|.+.+. ..++|+.
T Consensus 287 ~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le~s 361 (596)
T KOG4379|consen 287 GGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLELS 361 (596)
T ss_pred cCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEee-----eeEEeccchhhhccccchhhhhhhhccceEE
Confidence 45899999999999999999995 3 45566666677765532 23578899999999999999884 4999999
Q ss_pred EEecCCCCCCCCccccccc
Q psy15003 255 IKKTDDDKTYWPHLTKEKN 273 (317)
Q Consensus 255 LkK~~~~~~~W~rL~k~~~ 273 (317)
|.|++ +..-||||..++.
T Consensus 362 l~K~d-e~~twprL~~~dk 379 (596)
T KOG4379|consen 362 LTKAD-EIQTWPRLFAQDK 379 (596)
T ss_pred Eeecc-cccccchheeecc
Confidence 99997 5789999996643
No 49
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0028 Score=54.17 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred CCCceEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCC--------------CceEEEEEecccccccCCce
Q psy15003 19 TPPSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE--------------KKHHQVTIPFYKEINAEKSQ 82 (317)
Q Consensus 19 ~~p~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~--------------~~~y~~~l~L~~~I~pe~S~ 82 (317)
..|.++.+++++.+.|++.+++++ +++|.++++.|+++|..... ...|+-.+.|-..|+|+..+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~ 118 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIK 118 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccccee
Confidence 689999999999999999999985 89999999999999875421 24688899999999999777
Q ss_pred EEeeCCeEEEEEEecCC
Q psy15003 83 TFVRERNIEILIKKTDD 99 (317)
Q Consensus 83 ~~v~~rkIei~L~K~~~ 99 (317)
-+....-+.|+|.|.++
T Consensus 119 A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 119 AKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eEeeCcEEEEEEecccc
Confidence 77788889999999884
No 50
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.21 E-value=0.0037 Score=49.04 Aligned_cols=75 Identities=11% Similarity=0.250 Sum_probs=62.2
Q ss_pred cEEEEeeCCeEEEEEEcCCCC--CCeEEEecC-EEEEEEEeCC--------------CCceEEEEEecccccccccceEE
Q psy15003 183 SVAWAQRNHCIFLTICLEDCK--NPTINLDKN-QLYFDGIGGT--------------EKKHHQVTIPFYKEINAEKSQTF 245 (317)
Q Consensus 183 ~~~W~Qt~~~V~LtI~lkd~~--d~~V~~~~~-sl~f~~~~~~--------------~~~~y~~~leL~~~I~pe~s~~~ 245 (317)
+++|+.+.+.+.|.+.+++++ ++.|.+..+ .|++++.... ....|...+.|-..|+++..+-+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 579999999999999999974 788888764 7999875311 02368888999999999988888
Q ss_pred eeCcEEEEEEEe
Q psy15003 246 VRERNIEILIKK 257 (317)
Q Consensus 246 v~~~kVei~LkK 257 (317)
+...-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 899999999976
No 51
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.13 E-value=0.0045 Score=48.54 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=61.3
Q ss_pred ceEEEEeCCEEEEEEEecCCC--CCeEEEeeC-EEEEEEEeCCC--------------CceEEEEEecccccccCCceEE
Q psy15003 22 SVAWAQRNHCIFLTICLEDCK--NPTINLDKN-QLYFDGIGGTE--------------KKHHQVTIPFYKEINAEKSQTF 84 (317)
Q Consensus 22 ~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~-~l~f~~~~~~~--------------~~~y~~~l~L~~~I~pe~S~~~ 84 (317)
+++|+++++.+.|.+.+++++ ++.|.++++ .|+++|..... ...|.-.+.|-..|++++.+-+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 589999999999999999985 888888865 79998753210 1368888899999999988888
Q ss_pred eeCCeEEEEEEe
Q psy15003 85 VRERNIEILIKK 96 (317)
Q Consensus 85 v~~rkIei~L~K 96 (317)
....-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 888888998876
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=96.92 E-value=0.0099 Score=46.54 Aligned_cols=75 Identities=8% Similarity=0.096 Sum_probs=59.2
Q ss_pred CceEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC-----C-----------CceEEEEEecccccccCCce
Q psy15003 21 PSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT-----E-----------KKHHQVTIPFYKEINAEKSQ 82 (317)
Q Consensus 21 p~v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~-----~-----------~~~y~~~l~L~~~I~pe~S~ 82 (317)
|+++++++++.+.|.+.+++++ +++|.+..+.|++++.... + ...|.-.+.| ..|+++..+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~l-p~v~~~~i~ 79 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYL-PNVDEEEIK 79 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEEC-CCCCHHHCE
Confidence 5799999999999999999985 8999999999999875421 0 0135556666 478888888
Q ss_pred EEeeCCeEEEEEEe
Q psy15003 83 TFVRERNIEILIKK 96 (317)
Q Consensus 83 ~~v~~rkIei~L~K 96 (317)
-+....-+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 88888888888876
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=96.89 E-value=0.012 Score=46.10 Aligned_cols=75 Identities=8% Similarity=0.084 Sum_probs=59.9
Q ss_pred CcEEEEeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC-----C-----------CceEEEEEecccccccccce
Q psy15003 182 PSVAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT-----E-----------KKHHQVTIPFYKEINAEKSQ 243 (317)
Q Consensus 182 P~~~W~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~-----~-----------~~~y~~~leL~~~I~pe~s~ 243 (317)
|+++++++.+.+.|.+.+++++ +++|.+..+.|++++.... + ...|.-.+.|- .|+++..+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 4789999999999999999974 8999999999999876321 0 01355566674 79998888
Q ss_pred EEeeCcEEEEEEEe
Q psy15003 244 TFVRERNIEILIKK 257 (317)
Q Consensus 244 ~~v~~~kVei~LkK 257 (317)
.++.+.-+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 88999999999976
No 54
>KOG4379|consensus
Probab=96.75 E-value=0.0027 Score=63.04 Aligned_cols=90 Identities=20% Similarity=0.413 Sum_probs=70.6
Q ss_pred cccCCCceEEEEeCCEEEEEEEecCC---CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEee-CCeEE
Q psy15003 16 DKVTPPSVAWAQRNHCIFLTICLEDC---KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVR-ERNIE 91 (317)
Q Consensus 16 ~~~~~p~v~W~Q~~~~V~ltI~~kd~---~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~-~rkIe 91 (317)
++..+|.+.|-|+.+.+.+++.++.. ++++|.+-++.|.+... . .-.++=+||+.|.-|.|.+.+. +.++|
T Consensus 285 e~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----d-h~~~~g~lyasv~he~s~~ii~ean~Le 359 (596)
T KOG4379|consen 285 ENGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----D-HVIFDGELYASVGHELSAFIIAEANGLE 359 (596)
T ss_pred hccCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----e-eEEeccchhhhccccchhhhhhhhccce
Confidence 55689999999999999999999842 46777777777765421 1 2236667999999999999884 49999
Q ss_pred EEEEecCCCCCCCCCccccc
Q psy15003 92 ILIKKTDDDKTYWPHLTKEK 111 (317)
Q Consensus 92 i~L~K~~~~g~~WprL~k~~ 111 (317)
+.|.|++ .+.-||||...+
T Consensus 360 ~sl~K~d-e~~twprL~~~d 378 (596)
T KOG4379|consen 360 LSLTKAD-EIQTWPRLFAQD 378 (596)
T ss_pred EEEeecc-cccccchheeec
Confidence 9999996 466899998654
No 55
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.70 E-value=0.018 Score=43.70 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=61.6
Q ss_pred EEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCC-------------CCceEEEEEecccccccccceEEeeCc
Q psy15003 185 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGT-------------EKKHHQVTIPFYKEINAEKSQTFVRER 249 (317)
Q Consensus 185 ~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~-------------~~~~y~~~leL~~~I~pe~s~~~v~~~ 249 (317)
+++++.+.+.|.+.++++ +++.|.+.++.|.+++.... ....|...+.|-..|+++..+..+...
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 367888999999999997 48899999999999876321 135699999999999999999999999
Q ss_pred EEEEEEEe
Q psy15003 250 NIEILIKK 257 (317)
Q Consensus 250 kVei~LkK 257 (317)
.++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999875
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.53 E-value=0.024 Score=42.95 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=61.4
Q ss_pred EEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCC-------------CceEEEEEecccccccCCceEEeeCC
Q psy15003 24 AWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE-------------KKHHQVTIPFYKEINAEKSQTFVRER 88 (317)
Q Consensus 24 ~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~-------------~~~y~~~l~L~~~I~pe~S~~~v~~r 88 (317)
+++++++.+.|.+.++++. ++.|.+.++.|.++|..... ...|...+.|=..|+++..+......
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 3678899999999999985 89999999999998754321 35699999999999999999988888
Q ss_pred eEEEEEEe
Q psy15003 89 NIEILIKK 96 (317)
Q Consensus 89 kIei~L~K 96 (317)
-++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 88998865
No 57
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.50 E-value=0.045 Score=43.22 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=60.6
Q ss_pred EEEeeCCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeC---CC---------CceEEEEEecccccccccceEEeeCcE
Q psy15003 185 AWAQRNHCIFLTICLEDC--KNPTINLDKNQLYFDGIGG---TE---------KKHHQVTIPFYKEINAEKSQTFVRERN 250 (317)
Q Consensus 185 ~W~Qt~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~---~~---------~~~y~~~leL~~~I~pe~s~~~v~~~k 250 (317)
+|+++.+.+.|.+.+++. ++++|.+..+.|.+++... .+ ...|.-.+.|-..++++..+.++....
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999986 4899999999999987642 11 136788899999999999999999999
Q ss_pred EEEEEEecC
Q psy15003 251 IEILIKKTD 259 (317)
Q Consensus 251 Vei~LkK~~ 259 (317)
+.|++.|..
T Consensus 81 L~I~~pk~~ 89 (102)
T PF00011_consen 81 LTITIPKKE 89 (102)
T ss_dssp EEEEEEBSS
T ss_pred EEEEEEccc
Confidence 999999988
No 58
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.11 E-value=0.094 Score=41.36 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=59.9
Q ss_pred EEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeC---CCC---------ceEEEEEecccccccCCceEEeeCCe
Q psy15003 24 AWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGG---TEK---------KHHQVTIPFYKEINAEKSQTFVRERN 89 (317)
Q Consensus 24 ~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~---~~~---------~~y~~~l~L~~~I~pe~S~~~v~~rk 89 (317)
+|++.++.+.|.+.+++.. +++|.+.++.|.++|... .++ ..|.-.+.|=..|+++..+.++...-
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 6899999999999999875 899999999999987543 111 35777889999999999888888889
Q ss_pred EEEEEEecCC
Q psy15003 90 IEILIKKTDD 99 (317)
Q Consensus 90 Iei~L~K~~~ 99 (317)
+.|++.|..+
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999874
No 59
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=95.11 E-value=0.17 Score=38.79 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCCC-------CceEEEEEecccccccccceEEeeC-cEEEEEEEe
Q psy15003 191 HCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE-------KKHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKK 257 (317)
Q Consensus 191 ~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~~-------~~~y~~~leL~~~I~pe~s~~~v~~-~kVei~LkK 257 (317)
+...|.+.+++.+ +++|.+..+.|.+++..... ...|.-.+.|-..|+++..+-++.. ..+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 4788999999864 89999999999998863211 1468889999999999998888887 999998875
No 60
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=95.10 E-value=0.28 Score=38.22 Aligned_cols=71 Identities=4% Similarity=0.033 Sum_probs=58.6
Q ss_pred EEEeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C----CceEEEEEecccccccccceEEee-CcEEEEE
Q psy15003 185 AWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFVR-ERNIEIL 254 (317)
Q Consensus 185 ~W~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~----~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~ 254 (317)
+++.+.+.+.|.+.+++.+ +++|.+..+.|++++.... . ...|.-.+.|-..|++++.+-++. +.-+.|+
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 6788999999999999974 8899999999999987421 1 135788889999999999988886 7888887
Q ss_pred E
Q psy15003 255 I 255 (317)
Q Consensus 255 L 255 (317)
|
T Consensus 84 l 84 (86)
T cd06475 84 A 84 (86)
T ss_pred e
Confidence 6
No 61
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=95.05 E-value=0.23 Score=38.65 Aligned_cols=71 Identities=4% Similarity=0.056 Sum_probs=58.1
Q ss_pred EeeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C----CceEEEEEecccccccccceEEe-eCcEEEEEEE
Q psy15003 187 AQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFV-RERNIEILIK 256 (317)
Q Consensus 187 ~Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~----~~~y~~~leL~~~I~pe~s~~~v-~~~kVei~Lk 256 (317)
+.+.+.+.|.+.+++.+ ++.|++..+.|++++.... + .++|.-.+.|-..|++++-+-++ ....+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 45688999999999874 8999999999999986321 1 13477788999999999999998 6899999987
Q ss_pred e
Q psy15003 257 K 257 (317)
Q Consensus 257 K 257 (317)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 62
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=94.98 E-value=0.45 Score=37.13 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=56.4
Q ss_pred CcEEEEeeC-CeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCCC-------------CceEEEEEecccccccccceEE
Q psy15003 182 PSVAWAQRN-HCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE-------------KKHHQVTIPFYKEINAEKSQTF 245 (317)
Q Consensus 182 P~~~W~Qt~-~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~~-------------~~~y~~~leL~~~I~pe~s~~~ 245 (317)
|.++=+++. +...|++.+++++ ++.|.+..+.|.+++..... ...|.-.+.|-..|+++ +.+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 445556765 8999999999975 78999999999999763211 24588888898889885 567
Q ss_pred eeCcEEEEEEEe
Q psy15003 246 VRERNIEILIKK 257 (317)
Q Consensus 246 v~~~kVei~LkK 257 (317)
+.+..+.|+|.+
T Consensus 79 ~~~GvL~I~l~~ 90 (90)
T cd06470 79 LENGLLTIDLER 90 (90)
T ss_pred EeCCEEEEEEEC
Confidence 778888888853
No 63
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=94.90 E-value=0.25 Score=38.21 Aligned_cols=70 Identities=6% Similarity=0.101 Sum_probs=57.3
Q ss_pred eeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC--C--CceEEEEEecccccccccceEEe-eCcEEEEEEEe
Q psy15003 188 QRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT--E--KKHHQVTIPFYKEINAEKSQTFV-RERNIEILIKK 257 (317)
Q Consensus 188 Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~--~--~~~y~~~leL~~~I~pe~s~~~v-~~~kVei~LkK 257 (317)
.+.+.+.|++.+++.+ +++|++..+.|++++.-.. + -..|.-.+.|-..|+|+.-+-++ ....+.|++++
T Consensus 5 e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 5 TLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4678899999999864 8999999999999886311 1 14688889999999999999887 78999998864
No 64
>PRK10743 heat shock protein IbpA; Provisional
Probab=94.79 E-value=0.4 Score=40.75 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCcEEEEe-eCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C---------CceEEEEEecccccccccceEE
Q psy15003 181 PPSVAWAQ-RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E---------KKHHQVTIPFYKEINAEKSQTF 245 (317)
Q Consensus 181 ~P~~~W~Q-t~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~---------~~~y~~~leL~~~I~pe~s~~~ 245 (317)
.|+++-++ +.+.+.|++.+++++ ++.|+++.+.|++++.... + ...|.-.+.|-..|++++ -+
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 38899995 899999999999974 8999999999999886321 1 124777889999999984 66
Q ss_pred eeCcEEEEEEEecC
Q psy15003 246 VRERNIEILIKKTD 259 (317)
Q Consensus 246 v~~~kVei~LkK~~ 259 (317)
+...-++|+|.|..
T Consensus 112 ~~dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LVNGLLYIDLERVI 125 (137)
T ss_pred EeCCEEEEEEeCCC
Confidence 77899999999964
No 65
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=94.58 E-value=0.35 Score=37.52 Aligned_cols=70 Identities=4% Similarity=0.065 Sum_probs=57.4
Q ss_pred eCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C----CceEEEEEecccccccccceEEee-CcEEEEEEEec
Q psy15003 189 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKKT 258 (317)
Q Consensus 189 t~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~----~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~LkK~ 258 (317)
+.+...|++.+++.+ +++|.+..+.|++++.... + ..+|.-.+.|-..|++++-+-++. ...+.|+|.|+
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 467889999999874 8999999999999986321 0 134777889999999999999995 89999999875
No 66
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=94.49 E-value=0.27 Score=37.67 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=54.5
Q ss_pred CEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCCC-------ceEEEEEecccccccCCceEEeeC-CeEEEEEEe
Q psy15003 30 HCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEK-------KHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKK 96 (317)
Q Consensus 30 ~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~~-------~~y~~~l~L~~~I~pe~S~~~v~~-rkIei~L~K 96 (317)
+.+.|++.+++.+ +++|.+.++.|+++|...... ..|.-.+.|=..|+++..+-++.. .-+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 4788999999885 899999999999998643221 368888999999999988888876 778888765
No 67
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=94.37 E-value=0.48 Score=36.87 Aligned_cols=72 Identities=4% Similarity=0.031 Sum_probs=56.8
Q ss_pred eEEEEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---CC----ceEEEEEecccccccCCceEEee-CCeEEE
Q psy15003 23 VAWAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---EK----KHHQVTIPFYKEINAEKSQTFVR-ERNIEI 92 (317)
Q Consensus 23 v~W~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~~----~~y~~~l~L~~~I~pe~S~~~v~-~rkIei 92 (317)
-+.+.+++.+.|++.+++++ +++|++.++.|+++|.... .+ ..|.-.+.|=..|++++.+-+.. ..-+.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 36789999999999999986 8999999999999986432 11 34777888889999998887775 666666
Q ss_pred EE
Q psy15003 93 LI 94 (317)
Q Consensus 93 ~L 94 (317)
.|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 65
No 68
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=94.16 E-value=0.86 Score=35.51 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=54.3
Q ss_pred CceEEEEeC-CEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCCC-------------CceEEEEEecccccccCCceEE
Q psy15003 21 PSVAWAQRN-HCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTE-------------KKHHQVTIPFYKEINAEKSQTF 84 (317)
Q Consensus 21 p~v~W~Q~~-~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~~-------------~~~y~~~l~L~~~I~pe~S~~~ 84 (317)
|.++=++++ +...|++.+++++ ++.|.+..+.|+++|..... ...|.-.+.|=..|+++ +-+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 556667775 8999999999986 88899999999999753221 13577788888888876 444
Q ss_pred eeCCeEEEEEE
Q psy15003 85 VRERNIEILIK 95 (317)
Q Consensus 85 v~~rkIei~L~ 95 (317)
....-+.|+|.
T Consensus 79 ~~~GvL~I~l~ 89 (90)
T cd06470 79 LENGLLTIDLE 89 (90)
T ss_pred EeCCEEEEEEE
Confidence 56667777775
No 69
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=94.03 E-value=0.45 Score=36.69 Aligned_cols=70 Identities=4% Similarity=0.048 Sum_probs=56.3
Q ss_pred eeCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C----CceEEEEEecccccccccceEEe-eCcEEEEEEEe
Q psy15003 188 QRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFV-RERNIEILIKK 257 (317)
Q Consensus 188 Qt~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~----~~~y~~~leL~~~I~pe~s~~~v-~~~kVei~LkK 257 (317)
.+.+.+.|.+.+++.+ +++|++..+.|++++.... + .++|.-.+.|-..|++++.+-++ ....+.|++.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 3578899999999864 8999999999999886321 1 13477788899999999988888 48889998876
No 70
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=93.97 E-value=0.53 Score=36.62 Aligned_cols=71 Identities=4% Similarity=0.059 Sum_probs=56.6
Q ss_pred EEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---CC----ceEEEEEecccccccCCceEEe-eCCeEEEEEE
Q psy15003 26 AQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---EK----KHHQVTIPFYKEINAEKSQTFV-RERNIEILIK 95 (317)
Q Consensus 26 ~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~~----~~y~~~l~L~~~I~pe~S~~~v-~~rkIei~L~ 95 (317)
+.+++.+.|++.+++++ +++|++.++.|+++|.... ++ ++|.-.+.|=..|++++.+-+. ...-+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 46788999999999885 8999999999999985321 11 2477788898999999988887 4677888887
Q ss_pred e
Q psy15003 96 K 96 (317)
Q Consensus 96 K 96 (317)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 71
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=93.85 E-value=0.51 Score=36.47 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=56.2
Q ss_pred EEeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC--CC--ceEEEEEecccccccCCceEEe-eCCeEEEEEEe
Q psy15003 26 AQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT--EK--KHHQVTIPFYKEINAEKSQTFV-RERNIEILIKK 96 (317)
Q Consensus 26 ~Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~--~~--~~y~~~l~L~~~I~pe~S~~~v-~~rkIei~L~K 96 (317)
+.+++.+.|++.+++.+ +++|++.++.|++++.... +. ..|.-.+.|=..|+|+..+-+. ....+.|++++
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 35678899999999875 8999999999999985322 11 3677888899999999988886 67777888753
No 72
>PRK10743 heat shock protein IbpA; Provisional
Probab=93.32 E-value=1.3 Score=37.67 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=60.8
Q ss_pred CceEEEE-eCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---CC---------ceEEEEEecccccccCCceEEe
Q psy15003 21 PSVAWAQ-RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---EK---------KHHQVTIPFYKEINAEKSQTFV 85 (317)
Q Consensus 21 p~v~W~Q-~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~~---------~~y~~~l~L~~~I~pe~S~~~v 85 (317)
|+++-++ +++.+.|++.+++++ ++.|+++++.|+++|.... ++ ..|.-.+.|=..|++++.+ .
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~A~--~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGAN--L 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCcCE--E
Confidence 8899995 899999999999985 8999999999999985321 11 2477788899999998644 4
Q ss_pred eCCeEEEEEEecC
Q psy15003 86 RERNIEILIKKTD 98 (317)
Q Consensus 86 ~~rkIei~L~K~~ 98 (317)
...-+.|+|.|..
T Consensus 113 ~dGVL~I~lPK~~ 125 (137)
T PRK10743 113 VNGLLYIDLERVI 125 (137)
T ss_pred eCCEEEEEEeCCC
Confidence 5678899999964
No 73
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=93.24 E-value=1.5 Score=37.60 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=62.3
Q ss_pred CCCcEEEEee-CCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC---C---------CceEEEEEecccccccccceE
Q psy15003 180 TPPSVAWAQR-NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E---------KKHHQVTIPFYKEINAEKSQT 244 (317)
Q Consensus 180 ~~P~~~W~Qt-~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~---~---------~~~y~~~leL~~~I~pe~s~~ 244 (317)
..|.++=+++ ++.+.|++.+++++ ++.|+++.+.|++++.... + ...|.-.+.|-..|+++ +-
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 4588988884 67999999999974 8999999999999886311 1 12477788899999997 46
Q ss_pred EeeCcEEEEEEEecC
Q psy15003 245 FVRERNIEILIKKTD 259 (317)
Q Consensus 245 ~v~~~kVei~LkK~~ 259 (317)
++...-+.|+|.|..
T Consensus 109 ~~~nGVL~I~lPK~~ 123 (142)
T PRK11597 109 TFVNGLLHIDLIRNE 123 (142)
T ss_pred EEcCCEEEEEEeccC
Confidence 677899999999864
No 74
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=92.90 E-value=1.4 Score=37.79 Aligned_cols=79 Identities=11% Similarity=0.216 Sum_probs=61.2
Q ss_pred cCCCceEEEEe-CCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---CC---------ceEEEEEecccccccCCce
Q psy15003 18 VTPPSVAWAQR-NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---EK---------KHHQVTIPFYKEINAEKSQ 82 (317)
Q Consensus 18 ~~~p~v~W~Q~-~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~~---------~~y~~~l~L~~~I~pe~S~ 82 (317)
...|.++=+++ ++.+.|++.+++++ ++.|+++++.|+++|.... ++ ..|.-.+.|=..|++++.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~~A~ 109 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVSGAT 109 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccCcCE
Confidence 44588998884 67899999999985 8999999999999986321 11 2477778888899998544
Q ss_pred EEeeCCeEEEEEEecC
Q psy15003 83 TFVRERNIEILIKKTD 98 (317)
Q Consensus 83 ~~v~~rkIei~L~K~~ 98 (317)
....-+.|+|.|+.
T Consensus 110 --~~nGVL~I~lPK~~ 123 (142)
T PRK11597 110 --FVNGLLHIDLIRNE 123 (142)
T ss_pred --EcCCEEEEEEeccC
Confidence 45677899999864
No 75
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=92.37 E-value=1.2 Score=34.44 Aligned_cols=70 Identities=4% Similarity=0.065 Sum_probs=55.7
Q ss_pred eCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---C----CceEEEEEecccccccCCceEEee-CCeEEEEEEec
Q psy15003 28 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKKT 97 (317)
Q Consensus 28 ~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~----~~~y~~~l~L~~~I~pe~S~~~v~-~rkIei~L~K~ 97 (317)
+++...|++.+++++ +++|++.++.|+++|.... + ..+|.-.+.|=..|++++.+-+.. ..-+.|+|.|+
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 467889999999875 8999999999999985321 1 124777888889999999888885 77889999874
No 76
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=92.16 E-value=1.1 Score=34.70 Aligned_cols=68 Identities=7% Similarity=-0.008 Sum_probs=54.9
Q ss_pred CCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC----C---CceEEEEEecccccccccceEEee-CcEEEEEEEe
Q psy15003 190 NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT----E---KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKK 257 (317)
Q Consensus 190 ~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~----~---~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~LkK 257 (317)
++...|++.+++.+ +++|++..+.|++++.... . ..+|.-.+.|-..|+|++-+-++. ...+.|+|.|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 56778999999864 8999999999999886311 1 245777888999999999999996 8999998864
No 77
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=91.96 E-value=1.2 Score=34.23 Aligned_cols=70 Identities=4% Similarity=0.049 Sum_probs=53.6
Q ss_pred EeCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---C----CceEEEEEecccccccCCceEEee-CCeEEEEEEe
Q psy15003 27 QRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKK 96 (317)
Q Consensus 27 Q~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~----~~~y~~~l~L~~~I~pe~S~~~v~-~rkIei~L~K 96 (317)
.+++.+.|++.+++.+ +++|++.++.|+++|.... + ..+|.-.+.|=..|++++.+-+.. ..-+.|++.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 3577899999999875 8999999999999885321 1 134777788888899988877774 6677888765
No 78
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=91.13 E-value=1.7 Score=33.82 Aligned_cols=66 Identities=9% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCC---C--------CceEEEEEecccccccccceEEe-eCcEEEEEE
Q psy15003 190 NHCIFLTICLEDC--KNPTINLDKNQLYFDGIGGT---E--------KKHHQVTIPFYKEINAEKSQTFV-RERNIEILI 255 (317)
Q Consensus 190 ~~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~---~--------~~~y~~~leL~~~I~pe~s~~~v-~~~kVei~L 255 (317)
++.+.|++.+++. +++.|++..+.|.+++.... . ...|.-.+.|-..|+++..+-.+ ....+.|++
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 5678899999986 48999999999999886211 1 13477788899999999888888 667777765
No 79
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=89.23 E-value=2.7 Score=32.47 Aligned_cols=68 Identities=7% Similarity=-0.008 Sum_probs=52.7
Q ss_pred CCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC---C----CceEEEEEecccccccCCceEEee-CCeEEEEEEe
Q psy15003 29 NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT---E----KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILIKK 96 (317)
Q Consensus 29 ~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~---~----~~~y~~~l~L~~~I~pe~S~~~v~-~rkIei~L~K 96 (317)
++...|++.+++.+ +++|++.++.|+++|.... + ..+|.-.+.|=..|+|++-+-+.. ..-+.|+|.|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 56788999999875 8999999999999885321 1 134667788888999999888885 7777888754
No 80
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=88.35 E-value=2.2 Score=40.54 Aligned_cols=64 Identities=6% Similarity=0.247 Sum_probs=52.7
Q ss_pred eCCeEEEEEEcCCC---CCCeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEe--eCcEEEEEEE
Q psy15003 189 RNHCIFLTICLEDC---KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFV--RERNIEILIK 256 (317)
Q Consensus 189 t~~~V~LtI~lkd~---~d~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v--~~~kVei~Lk 256 (317)
+.+.+.|+|.++++ +++.++++++.|.+.... ..|.+++.|-.+|+++.++-+. ..+.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~----~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPK----PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCC----CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36889999999975 589999999999998642 2699999999999999877665 4488888873
No 81
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=87.33 E-value=4.2 Score=31.57 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=48.3
Q ss_pred eCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC----C-C------ceEEEEEecccccccCCceEEe-eCCeEEEE
Q psy15003 28 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT----E-K------KHHQVTIPFYKEINAEKSQTFV-RERNIEIL 93 (317)
Q Consensus 28 ~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~----~-~------~~y~~~l~L~~~I~pe~S~~~v-~~rkIei~ 93 (317)
.++.+.|++.+++.+ ++.|++..+.|.++|.... + + ..|.-.+.|=..|+++..+-.. ...-+.|+
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 356788999999875 8999999999999875311 1 1 3466677888889998877776 34445554
Q ss_pred E
Q psy15003 94 I 94 (317)
Q Consensus 94 L 94 (317)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 4
No 82
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=85.21 E-value=4.7 Score=38.32 Aligned_cols=64 Identities=6% Similarity=0.247 Sum_probs=51.3
Q ss_pred eCCEEEEEEEecCC---CCCeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEe--eCCeEEEEEE
Q psy15003 28 RNHCIFLTICLEDC---KNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFV--RERNIEILIK 95 (317)
Q Consensus 28 ~~~~V~ltI~~kd~---~d~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v--~~rkIei~L~ 95 (317)
+.+.+.|+|.++++ +++.+++.++.|.+.... ..|.|+|.|=.+|+++..+-+. ..+.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~----~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPK----PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCC----CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 37889999999977 488999999999998642 2799999999999999865554 5577777773
No 83
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=84.64 E-value=9.2 Score=29.90 Aligned_cols=64 Identities=2% Similarity=0.010 Sum_probs=47.8
Q ss_pred CCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC-----CC-----ceEEEEEecccccccccceEEeeCc-EEEE
Q psy15003 190 NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT-----EK-----KHHQVTIPFYKEINAEKSQTFVRER-NIEI 253 (317)
Q Consensus 190 ~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~-----~~-----~~y~~~leL~~~I~pe~s~~~v~~~-kVei 253 (317)
++.+.|++.+++.+ +++|++..+.|++++.... +. ..|.-.+.|-..|++++-+-++... .+.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 67899999999874 8999999999999986321 11 2345677888899998877777554 5554
No 84
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=83.10 E-value=15 Score=28.44 Aligned_cols=66 Identities=6% Similarity=0.105 Sum_probs=49.6
Q ss_pred eCCeEEEEEEcCCCC--CCeEEEecCEEEEEEEeCC----CC---ceEEEEEecccccccccceEEe-eCcEEEEE
Q psy15003 189 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT----EK---KHHQVTIPFYKEINAEKSQTFV-RERNIEIL 254 (317)
Q Consensus 189 t~~~V~LtI~lkd~~--d~~V~~~~~sl~f~~~~~~----~~---~~y~~~leL~~~I~pe~s~~~v-~~~kVei~ 254 (317)
+.+...|++.+++.+ +++|.+..+.|++++.... .+ ..|.-.+.|-..|++++.+-++ ...-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 467788999999864 8999999999999986321 11 3566678899999998887776 45655554
No 85
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=78.24 E-value=20 Score=28.03 Aligned_cols=60 Identities=0% Similarity=-0.023 Sum_probs=43.2
Q ss_pred CCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC-----CC-----ceEEEEEecccccccCCceEEeeCC
Q psy15003 29 NHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT-----EK-----KHHQVTIPFYKEINAEKSQTFVRER 88 (317)
Q Consensus 29 ~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~-----~~-----~~y~~~l~L~~~I~pe~S~~~v~~r 88 (317)
++.++|++.+++.+ +++|++.++.|++++.... +. ..|.-.+.|=..|++++.+-+....
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~ 78 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLG 78 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCC
Confidence 56899999999885 8999999999999986421 11 1244566677778888766655443
No 86
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=73.04 E-value=41 Score=25.95 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=43.1
Q ss_pred eCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC----CC---ceEEEEEecccccccCCceEEe
Q psy15003 28 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT----EK---KHHQVTIPFYKEINAEKSQTFV 85 (317)
Q Consensus 28 ~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~----~~---~~y~~~l~L~~~I~pe~S~~~v 85 (317)
.++...|++.+++.+ +++|++..+.|+++|.... ++ ..|.-.+.|=..|++++.+-+.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~ 71 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAML 71 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEE
Confidence 466788999999875 8999999999999986422 11 2455566777888888766554
No 87
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=71.11 E-value=44 Score=26.33 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=49.1
Q ss_pred CeEEEEEEcCCC--CCCeEEEecCEEEEEEEeCC----C---CceEEEEEecccccccccceEEee-CcEEEEEE
Q psy15003 191 HCIFLTICLEDC--KNPTINLDKNQLYFDGIGGT----E---KKHHQVTIPFYKEINAEKSQTFVR-ERNIEILI 255 (317)
Q Consensus 191 ~~V~LtI~lkd~--~d~~V~~~~~sl~f~~~~~~----~---~~~y~~~leL~~~I~pe~s~~~v~-~~kVei~L 255 (317)
+.-.|++.+++. +++.|++..+.|.++++... + .++|.-.+.|-..|+++.-+-.+. ...+.|.+
T Consensus 15 ~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 15 EPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 344588888875 58999999999999987321 1 245777888999999998888877 56666654
No 88
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=61.57 E-value=78 Score=24.91 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=46.7
Q ss_pred eCCEEEEEEEecCCC--CCeEEEeeCEEEEEEEeCC----C---CceEEEEEecccccccCCceEEee-CCeEEEE
Q psy15003 28 RNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGT----E---KKHHQVTIPFYKEINAEKSQTFVR-ERNIEIL 93 (317)
Q Consensus 28 ~~~~V~ltI~~kd~~--d~~V~~~~~~l~f~~~~~~----~---~~~y~~~l~L~~~I~pe~S~~~v~-~rkIei~ 93 (317)
+++.-.|++.+++.+ +++|++.++.|.++|.-.. + .+.|.-.+.|=..|+++.-+-... ...+.|.
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 345556888888764 8999999999999985322 1 135677778888999988777666 3444443
No 89
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=51.58 E-value=1.4e+02 Score=26.67 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCceEEEEeCC-EEEEEEEecCCC--C-CeEEEeeCEEEEEEEeCCCCceEEEEEecccccccCCceEEeeCCeEEEEEE
Q psy15003 20 PPSVAWAQRNH-CIFLTICLEDCK--N-PTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIK 95 (317)
Q Consensus 20 ~p~v~W~Q~~~-~V~ltI~~kd~~--d-~~V~~~~~~l~f~~~~~~~~~~y~~~l~L~~~I~pe~S~~~v~~rkIei~L~ 95 (317)
.+.++=.++.+ .+.|...+++|. + +.|.+..+...+.+.. ++ .|.-.+.|-.+ .++.-+.++...-+||+|+
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~--~~-~~~krv~L~~~-~~e~~~~t~nNgILEIri~ 166 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV--GE-KYLKRVALPWP-DPEITSATFNNGILEIRIR 166 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec--CC-ceEeeEecCCC-ccceeeEEEeCceEEEEEe
Confidence 44555566666 688888999995 4 6788886655554432 22 35578888777 5666677777788999999
Q ss_pred ecC
Q psy15003 96 KTD 98 (317)
Q Consensus 96 K~~ 98 (317)
+++
T Consensus 167 ~~~ 169 (177)
T PF05455_consen 167 RTE 169 (177)
T ss_pred ecC
Confidence 987
No 90
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=51.54 E-value=1.5e+02 Score=26.41 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred cEEEEeeCC-eEEEEEEcCCCC--C-CeEEEecCEEEEEEEeCCCCceEEEEEecccccccccceEEeeCcEEEEEEEec
Q psy15003 183 SVAWAQRNH-CIFLTICLEDCK--N-PTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKT 258 (317)
Q Consensus 183 ~~~W~Qt~~-~V~LtI~lkd~~--d-~~V~~~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s~~~v~~~kVei~LkK~ 258 (317)
.++=.++.+ .+.|...++++. + +.|.+..+...+.+.. + ..|.-.+.|-.+ .++.-+.++...-+||+|++.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~--~-~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~ 168 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV--G-EKYLKRVALPWP-DPEITSATFNNGILEIRIRRT 168 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec--C-CceEeeEecCCC-ccceeeEEEeCceEEEEEeec
Confidence 344445566 688999999984 4 6788886554444432 2 236678888877 576667888899999999998
Q ss_pred C
Q psy15003 259 D 259 (317)
Q Consensus 259 ~ 259 (317)
+
T Consensus 169 ~ 169 (177)
T PF05455_consen 169 E 169 (177)
T ss_pred C
Confidence 7
No 91
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=28.14 E-value=20 Score=25.01 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=10.0
Q ss_pred eecCCCeeecCC
Q psy15003 118 KVDFNKWKDEDD 129 (317)
Q Consensus 118 ~~Dwdkw~~~dd 129 (317)
++|||+|+.-+.
T Consensus 17 kvdWd~wvSf~G 28 (49)
T PF06543_consen 17 KVDWDKWVSFDG 28 (49)
T ss_pred ccchHHheeeCC
Confidence 699999998763
No 92
>KOG3247|consensus
Probab=25.74 E-value=39 Score=33.99 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=60.7
Q ss_pred CCCcEEEEeeCCeEEEEEEcCCCCCCeEEE--ecCEEEEEEEeCCCCceEEEEEecccccccccc---eEEeeCcEEEEE
Q psy15003 180 TPPSVAWAQRNHCIFLTICLEDCKNPTINL--DKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKS---QTFVRERNIEIL 254 (317)
Q Consensus 180 ~~P~~~W~Qt~~~V~LtI~lkd~~d~~V~~--~~~sl~f~~~~~~~~~~y~~~leL~~~I~pe~s---~~~v~~~kVei~ 254 (317)
++|++.=.|-.+.++|.|..+-.+-.++++ .++-+.|.+ .+|-+.+.+-+.+..+.. +|-..+..+.|+
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~------~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK 75 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSA------GPYFLRLAGPGMVEDDARPNASYDAKDGYAHVK 75 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhcc------chhHHhhcCcchhhhhccccCccccccceeEEe
Confidence 689999999999999999999654444444 456677765 247777777777776654 345566999999
Q ss_pred EEecCCCCCCCCccc
Q psy15003 255 IKKTDDDKTYWPHLT 269 (317)
Q Consensus 255 LkK~~~~~~~W~rL~ 269 (317)
+.|.. .++..+-|.
T Consensus 76 ~~K~~-~~e~F~~Ld 89 (466)
T KOG3247|consen 76 VPKFH-PGEHFSDLD 89 (466)
T ss_pred ecCCC-ccccccchh
Confidence 99988 456666544
Done!