RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15003
(317 letters)
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 127 bits (320), Expect = 1e-36
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 179 VTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEIN 238
+ P S W R +F+ C+ED K+ +N +K++L F +GG++ H I + I+
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 239 AEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFNKWKDEDDSDDENNGG 298
S+ +R+I ++K + + WP LTKE+ K +WL VDFN WKD +D D + +
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQ-SWPRLTKERAKLNWLSVDFNNWKDWED-DSDEDMS 118
Query: 299 NFEDVS 304
NF+ S
Sbjct: 119 NFDRFS 124
Score = 126 bits (319), Expect = 1e-36
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 18 VTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEIN 77
+ P S W R +F+ C+ED K+ +N +K++L F +GG++ H I + I+
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 78 AEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFNKWKDEDDSDDENNGG 137
S+ +R+I ++K + + WP LTKE+ K +WL VDFN WKD +D D + +
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQ-SWPRLTKERAKLNWLSVDFNNWKDWED-DSDEDMS 118
Query: 138 NFED 141
NF+
Sbjct: 119 NFDR 122
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock
protein, ATP-binding, heat shock, nucleotide-binding,
acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Length = 134
Score = 121 bits (304), Expect = 2e-34
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 16 DKVTPPSVAWAQRN-------HCIFLTICLEDCKNPTINLDKNQLYFDG-----IGGTEK 63
DKV P VAWAQR+ + + +T+ + DC P + + + + +G
Sbjct: 2 DKVINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENV 61
Query: 64 KHHQVTIPFYKEINAEKSQTFVRE-RNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFN 122
H+Q+ I YKEI EK+ V ++ + + K D + YWP LTKEK KY ++K DF+
Sbjct: 62 HHYQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVKYPYIKTDFD 121
Query: 123 KWKDEDDSDDE 133
KW D D+ D+
Sbjct: 122 KWVDADEQDEV 132
Score = 119 bits (299), Expect = 1e-33
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 179 VTPPSVAWAQRN-------HCIFLTICLEDCKNPTINLDKNQLYFDG-----IGGTEKKH 226
V P VAWAQR+ + + +T+ + DC P + + + + +G H
Sbjct: 4 VINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHH 63
Query: 227 HQVTIPFYKEINAEKSQTFVRE-RNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFNKW 285
+Q+ I YKEI EK+ V ++ + + K D + YWP LTKEK KY ++K DF+KW
Sbjct: 64 YQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVKYPYIKTDFDKW 123
Query: 286 KDEDDSDDE 294
D D+ D+
Sbjct: 124 VDADEQDEV 132
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 121 bits (304), Expect = 4e-34
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 178 AVTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEI 237
+ P V WAQR+ ++LT+ L D K+ ++ + L+ G + + + ++ Y +I
Sbjct: 1 SSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKI 60
Query: 238 NAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK-YHWLKVDFNKWKDEDDSDDENN 296
E V RNI I+K ++++W L K + K ++KVD+NKW DED+ +
Sbjct: 61 MTEYR-KNVGLRNIIFSIQKE--ERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSET 117
Query: 297 GGNFEDVSISF 307
+ E ++
Sbjct: 118 ASDDESAFVNQ 128
Score = 120 bits (302), Expect = 9e-34
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 20 PPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAE 79
P V WAQR+ ++LT+ L D K+ ++ + L+ G + + + ++ Y +I E
Sbjct: 4 NPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE 63
Query: 80 KSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK-YHWLKVDFNKWKDEDDSDDENNGGN 138
V RNI I+K ++++W L K + K ++KVD+NKW DED+ + +
Sbjct: 64 YR-KNVGLRNIIFSIQKE--ERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASD 120
Query: 139 FEDVAGFLLENS 150
E S
Sbjct: 121 DESAFVNQDSES 132
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 60.3 bits (146), Expect = 8e-12
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 25 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQ 82
W Q + +T+ +++ + + + + +L + + + + + I E+S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGE-DYNLKLELLHPIIPEQST 72
Query: 83 TFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFN 122
V IEI +KK + + W L + + + +
Sbjct: 73 FKVLSTKIEIKLKKPEAVR--WEKLEGQGDVPTPKQFVAD 110
Score = 60.3 bits (146), Expect = 8e-12
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 186 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQ 243
W Q + +T+ +++ + + + + +L + + + + + I E+S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGE-DYNLKLELLHPIIPEQST 72
Query: 244 TFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKVDFN 283
V IEI +KK + + W L + + + +
Sbjct: 73 FKVLSTKIEIKLKKPEAVR--WEKLEGQGDVPTPKQFVAD 110
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 42.9 bits (101), Expect = 8e-06
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 25 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQ 82
+ Q+ + +T+ + N I+ + L E + + + +I +K +
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGED-AYYLQPRLFGKIIPDKCK 65
Query: 83 TFVRERNIEILIKKTDDDKTYWPHLTKEK 111
V IEI + K D W L K
Sbjct: 66 YEVLSTKIEICLAKADIIT--WASLEHGK 92
Score = 42.9 bits (101), Expect = 8e-06
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 186 WAQRNHCIFLTICLEDCK--NPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQ 243
+ Q+ + +T+ + N I+ + L E + + + +I +K +
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGED-AYYLQPRLFGKIIPDKCK 65
Query: 244 TFVRERNIEILIKKTDDDKTYWPHLTKEK 272
V IEI + K D W L K
Sbjct: 66 YEVLSTKIEICLAKADIIT--WASLEHGK 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 47/344 (13%), Positives = 90/344 (26%), Gaps = 105/344 (30%)
Query: 7 LELVPGYEIDKVTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHH 66
L++ Y++ + W +C LE + +D N T + H
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--------WTSRSDH 219
Query: 67 QVTIPFYKEINAEKSQTFVRERNIE----ILIKKTDD--DKTYWPHL---------TKEK 111
I + + ++ + E +L + + W T+ K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL----LNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 112 N---------KYHWLKVD-------------FNKWKDEDDSD--DENNGGNFEDVAGF-- 145
H K+ D D E N ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 146 LLENSPA-WDILYQIVYNFNSL--VVSRS----------TYYQPKAVTPPSVA------- 185
+ + A WD N + L ++ S + +V PPS
Sbjct: 336 SIRDGLATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 186 --WAQR---------NHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKK--HHQVTIP 232
W N ++ + K TI++ +Y + E + H+ +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVD 451
Query: 233 FYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYH 276
Y + + + LI D Y H+ +H
Sbjct: 452 HYN---------IPKTFDSDDLIPPYLDQYFYS-HIG-----HH 480
Score = 34.8 bits (79), Expect = 0.035
Identities = 28/194 (14%), Positives = 48/194 (24%), Gaps = 49/194 (25%)
Query: 112 NKYHWLKVDFNKWKDEDDSDDENNGGNFEDVAGFLLENSPAWDILYQIVYNFNSLVVSRS 171
K WL + +S + +LE +LYQI N+ S S
Sbjct: 182 FKIFWLNLK------NCNSPET------------VLE--MLQKLLYQIDPNWTSRSDHSS 221
Query: 172 TYYQPK--AVTPPSVAWAQRNHCIFLTICLEDCKNPTI----NLD-------KNQLYFDG 218
+ + L + L + +N NL + + D
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 219 IGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYH-- 276
+ H + S T + +L+K D P N
Sbjct: 281 LSAATTTHISLD---------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 277 ----WLKVDFNKWK 286
++ W
Sbjct: 332 IIAESIRDGLATWD 345
Score = 34.8 bits (79), Expect = 0.038
Identities = 42/255 (16%), Positives = 70/255 (27%), Gaps = 84/255 (32%)
Query: 60 GTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNKYHWLKV 119
+ T +K +N +K T + E ++ +L + + + + L V
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTT-IIESSLNVL--EPAEYRKM----------FDRLSV 380
Query: 120 DFNK------------WKDEDDSDDENNGGNFEDVAGF----LLENSPAWDILYQIVYNF 163
F W D SD V L+E P + I
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYSLVEKQPK-ESTISI---- 428
Query: 164 NSLVVSRSTYYQPKAVTPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQL---YFDG-- 218
S+ + + K ++ H + D N D + L Y D
Sbjct: 429 PSIYLE----LKVKLENEYAL------HRSIV-----DHYNIPKTFDSDDLIPPYLDQYF 473
Query: 219 ---IGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTD--------------DD 261
IG HH I + + F+ R +E I+
Sbjct: 474 YSHIG-----HHLKNIEHPERMT-LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 262 KTYWPHLTKEKNKYH 276
K Y P++ KY
Sbjct: 528 KFYKPYICDNDPKYE 542
Score = 34.8 bits (79), Expect = 0.043
Identities = 37/272 (13%), Positives = 72/272 (26%), Gaps = 93/272 (34%)
Query: 62 EKKHHQVTIPFYKEINAEKSQTFVRE----------RNI-------EILIKKTDDDKTY- 103
E ++ YK+I + FV ++I I++ K T
Sbjct: 13 EHQYQ------YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 104 --WPHLTKEKN------------KYHWLKVDFNKWKDEDDSDDENNGGNFE--------D 141
W L+K++ Y +L + K E + D
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKTE-QRQPSMMTRMYIEQRDRLYND 122
Query: 142 VAGF-----------------LLENSPAWDILYQIVYNF-----NSLVVSRSTYYQPKAV 179
F LLE PA ++ ++ + + Y+ +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 180 TPPSVAWAQRNHCIFLTICLEDCKNPTINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINA 239
+ W +C LE + +D N T + H I
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--------WTSRSDHSSNIKLRIHSIQ 231
Query: 240 EKSQTFVRERNIE----ILIKKTDD--DKTYW 265
+ + ++ + E +L + + W
Sbjct: 232 AELRRLLKSKPYENCLLVL----LNVQNAKAW 259
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 35.8 bits (82), Expect = 0.004
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 17 KVTPPSVAWAQRNHCIFLTICLEDCKNP-----TINLDKNQLYFDGIGGTEKKHHQVTIP 71
V + W Q + + + I L ++ + K + +
Sbjct: 17 TVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNN 76
Query: 72 FYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK 113
K I+ E S V+ + IL +K ++ W +LT+ + +
Sbjct: 77 LLKPISVEGSSKKVKTDTVLILCRKKVENTR-WDYLTQVEKE 117
Score = 35.4 bits (81), Expect = 0.005
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 175 QPKAVTPPSVAWAQRNHCIFLTICLEDCKNP-----TINLDKNQLYFDGIGGTEKKHHQV 229
V + W Q + + + I L ++ + K + +
Sbjct: 14 TGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMI 73
Query: 230 TIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYWPHLTKEKNK 274
K I+ E S V+ + IL +K ++ W +LT+ + +
Sbjct: 74 VNNLLKPISVEGSSKKVKTDTVLILCRKKVENTR-WDYLTQVEKE 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.021
Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 99/262 (37%)
Query: 49 DKNQLY--FDGIGGTEKKHHQVTIPFYKEINA--EKSQTFVRE------RNIEILIKKTD 98
QL F G G T+ +++E+ + V + + LI+ T
Sbjct: 152 GNAQLVAIFGGQGNTD--------DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 99 DDKTYWPHLTKEKNKYHWLKVDFNKW-KDEDDSDDEN----------------------- 134
D + + ++ +W ++ ++ D++
Sbjct: 204 DAEKVFTQ-----------GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 135 ------NGGNFED------------VAGFLLENSPAWDILYQIVYNFNSL---VVSRSTY 173
G V + + +W+ + V ++ + R
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 174 YQPKAVTPPSVAWAQRNHCIFLTICLE-DCKNPT-----INLDKNQLYFDGIGGTEKK-- 225
P PPS+ L LE + P+ NL + Q+ D + T
Sbjct: 313 AYPNTSLPPSI----------LEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLP 361
Query: 226 -HHQVTIPFYKEINAEKSQTFV 246
QV I +N K+ V
Sbjct: 362 AGKQVEISL---VNGAKN--LV 378
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 30.8 bits (69), Expect = 0.29
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 45 TINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYW 104
G + + I E+ I+I ++K + W
Sbjct: 58 IFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQR--W 115
Query: 105 PHL 107
L
Sbjct: 116 GGL 118
Score = 30.8 bits (69), Expect = 0.29
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 206 TINLDKNQLYFDGIGGTEKKHHQVTIPFYKEINAEKSQTFVRERNIEILIKKTDDDKTYW 265
G + + I E+ I+I ++K + W
Sbjct: 58 IFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQR--W 115
Query: 266 PHL 268
L
Sbjct: 116 GGL 118
>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS,
regulatory protein, protein initiative, PSI, midwest
center for structural genomics; 2.00A {Escherichia coli}
SCOP: a.233.1.1
Length = 172
Score = 29.5 bits (66), Expect = 0.83
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 114 YHWLKVDFNKWKDEDDSD---------DENNGGNFEDVAGFLLENSPAWDILYQIVYNFN 164
YH L V ++ +D+ D D + F++ + + FN
Sbjct: 77 YHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHFDAGTHGFN 136
Query: 165 SLVVSRSTY 173
+ Y
Sbjct: 137 AQTPMWEKY 145
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter
associated D CORC_HLYC, structural genomics, PSI-2;
1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Length = 93
Score = 27.6 bits (62), Expect = 1.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 120 DFNKWKDEDDSDDENNGGNFEDVAGFLLE 148
D + D ++ G + ++G LE
Sbjct: 27 DVRHYLDLPENAFGELGDEVDTLSGLFLE 55
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 28.6 bits (65), Expect = 3.1
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 9 LVPGYEIDKVTPPSVAWAQRN 29
LVPGYE P VAW+ +N
Sbjct: 299 LVPGYE----APCYVAWSAQN 315
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 27.9 bits (63), Expect = 4.9
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 9 LVPGYEIDKVTPPSVAWAQRN 29
LVPG+E P ++A++Q N
Sbjct: 325 LVPGFE----APVNLAYSQGN 341
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 27.9 bits (63), Expect = 5.5
Identities = 3/21 (14%), Positives = 4/21 (19%), Gaps = 4/21 (19%)
Query: 9 LVPGYEIDKVTPPSVAWAQRN 29
G + AW
Sbjct: 284 AAAGAA----AAAATAWGAAA 300
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 27.5 bits (62), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 9 LVPGYEIDKVTPPSVAWAQRN 29
LVPGYE P +A++ RN
Sbjct: 322 LVPGYE----APVMLAYSARN 338
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 27.6 bits (62), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 9 LVPGYEIDKVTPPSVAWAQRN 29
LVPGYE P ++ ++QRN
Sbjct: 338 LVPGYE----APINLVYSQRN 354
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.430
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,126,221
Number of extensions: 296986
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 33
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)